RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10458
         (563 letters)



>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl
           transferase 2, TUTase 2, RET2 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 183

 Score = 85.7 bits (211), Expect = 5e-20
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 35/190 (18%)

Query: 307 RVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKD 366
             R     +K W K  N+   +    +T++++T++ ++YL   + +  +           
Sbjct: 3   AARHTAMAVKAWGKATNVGAGSGA-MLTSYAVTVMFIYYLLVTRQVLWVDPW-------- 53

Query: 367 RRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLG 425
                   +      + +      + +     L  LL GFF FY+  +D+  + +SL   
Sbjct: 54  --------SLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRN 105

Query: 426 SPIPKPEHGA-------------LYINNPLERGL----NVSKNVSFEELERLKVEVRNAS 468
               + + G                I +P E       N+ +++   + + +K E   A+
Sbjct: 106 RRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAA 165

Query: 469 WTLESTANSN 478
             +E    +N
Sbjct: 166 QCMERFLPTN 175


>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 197

 Score = 33.0 bits (75), Expect = 0.052
 Identities = 22/136 (16%), Positives = 34/136 (25%), Gaps = 37/136 (27%)

Query: 178 CAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLET 237
             IF +GS        G D+D +                           R       ++
Sbjct: 78  GKIFTYGSYRLGVHGPGSDIDTL-------------------VVVPKHVTREDFFTVFDS 118

Query: 238 VGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNH-----DMS-ALECDLSMTNLTA 291
           +  L +               ++  +  A VPIIK         +  A      +     
Sbjct: 119 L--LRER----------KELDEIAPVPDAFVPIIKIKFSGISIALICARLDQPQVPLSLT 166

Query: 292 LYMAELLYLFGEIDWR 307
           L    LL    E D R
Sbjct: 167 LSDKNLLRNLDEKDLR 182


>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
           LysA {Escherichia coli [TaxId: 562]}
          Length = 174

 Score = 31.9 bits (72), Expect = 0.12
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 255 PGCSQVKRILGARVPIIKYNHDMSALECDLSMTNL--TALYMA 295
            GC     +L  +V  +K       +  D    +L   A+Y +
Sbjct: 23  FGCPVWVYVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGS 65


>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 196

 Score = 31.4 bits (71), Expect = 0.21
 Identities = 25/138 (18%), Positives = 36/138 (26%), Gaps = 41/138 (29%)

Query: 178 CAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLET 237
             IF FGS        G D+D +                                RH++ 
Sbjct: 77  GKIFTFGSYRLGVHTKGADIDALCVAP----------------------------RHVDR 108

Query: 238 VGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAE- 296
             D    F              ++ +  A VP+IK   D   +E D+    L    + E 
Sbjct: 109 -SDFFTSFYDKLKLQ--EEVKDLRAVEEAFVPVIKLCFDG--IEIDILFARLALQTIPED 163

Query: 297 -------LLYLFGEIDWR 307
                  LL        R
Sbjct: 164 LDLRDDSLLKNLDIRCIR 181


>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 140

 Score = 26.4 bits (58), Expect = 6.3
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 4/50 (8%)

Query: 118 THNVFPPTEDHVRECLASCNT----ITQQMTTLHNITKMNDINTRLRFLV 163
           T     P + H+   +   N     I      L   ++  +     + L+
Sbjct: 12  TEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLI 61


>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
          GABARAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 25.5 bits (56), Expect = 9.5
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 16/88 (18%)

Query: 2  WSFKNVFSFSKALKDPSGNVLSKY--FVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTH 59
          + +K    F K   +    +  KY   VP I  +  +A+   L         Y +P    
Sbjct: 5  FVYKEEHPFEKRRSE-GEKIRKKYPDRVPVIVEKAPKARIGDL-----DKKKYLVPSDLT 58

Query: 60 FVIVEMKDSQVTRRILNKCGHLDKSQVI 87
                   Q    ++ K  HL     +
Sbjct: 59 V-------GQF-YFLIRKRIHLRAEDAL 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,025,788
Number of extensions: 92979
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 10
Length of query: 563
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 473
Effective length of database: 1,171,896
Effective search space: 554306808
Effective search space used: 554306808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)