BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10461
(1359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FHO|A Chain A, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 47
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 44/46 (95%)
Query: 332 TPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYIPI 377
TPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPAGY+PI
Sbjct: 2 TPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPI 47
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 42/44 (95%)
Query: 285 TPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGHL 328
TPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPAG++
Sbjct: 2 TPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYV 45
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 39/42 (92%)
Query: 785 TPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAA 826
TPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPA
Sbjct: 2 TPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG 43
>pdb|2F9D|P Chain P, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|Q Chain Q, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 43
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 279 GHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 321
GH+ + TPEQ+QA+RWEREIDERNRPL+D+EL+A FP GYKVL
Sbjct: 1 GHIXSXTPEQLQAWRWEREIDERNRPLSDEELDAXFPEGYKVL 43
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 326 GHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 368
GH+ + TPEQ+QA+RWEREIDERNRPL+D+EL+A FP GYKVL
Sbjct: 1 GHIXSXTPEQLQAWRWEREIDERNRPLSDEELDAXFPEGYKVL 43
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 779 GHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 821
GH+ + TPEQ+QA+RWEREIDERNRPL+D+EL+A FP GYKVL
Sbjct: 1 GHIXSXTPEQLQAWRWEREIDERNRPLSDEELDAXFPEGYKVL 43
>pdb|3LQV|P Chain P, Branch Recognition By Sf3b14
pdb|3LQV|Q Chain Q, Branch Recognition By Sf3b14
Length = 39
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 38/39 (97%)
Query: 283 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 321
+MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 38/39 (97%)
Query: 330 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 368
+MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 38/39 (97%)
Query: 783 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 821
+MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39
>pdb|2F9J|P Chain P, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|Q Chain Q, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 36
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 34/35 (97%)
Query: 287 EQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 321
EQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 2 EQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 36
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 34/35 (97%)
Query: 334 EQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 368
EQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 2 EQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 36
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 34/35 (97%)
Query: 787 EQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 821
EQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 2 EQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 36
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG 1038
R + QI I +++ + V+ A +I ++ ++ ++ + HL + L
Sbjct: 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLK 373
Query: 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA 1098
+E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A
Sbjct: 374 DECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430
Query: 1099 DR-GPEYVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157
+ G E+ + +C H AIR A + + + G AT++ +
Sbjct: 431 GQLGVEFFDEK-LNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486
Query: 1158 VQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209
+R+ T I +++E C + +LP ++ P NV+ V K+L
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL--- 543
Query: 1210 FEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ IG + + V P+LE D+D+
Sbjct: 544 -QKIGPILDNSTLQSEVKPILEKLTQDQDV 572
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG 1038
R + QI I +++ + V+ A +I ++ ++ ++ + HL + L
Sbjct: 318 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLK 374
Query: 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA 1098
+E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A
Sbjct: 375 DECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 431
Query: 1099 DR-GPEYVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157
+ G E+ + +C H AIR A + + + G AT++ +
Sbjct: 432 GQLGVEFFDEK-LNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 487
Query: 1158 VQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209
+R+ T I +++E C + +LP ++ P NV+ V K+L
Sbjct: 488 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL--- 544
Query: 1210 FEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ IG + + V P+LE D+D+
Sbjct: 545 -QKIGPILDNSTLQSEVKPILEKLTQDQDV 573
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG 1038
R + QI I +++ + V+ A +I ++ ++ ++ + HL + L
Sbjct: 317 RENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLK 373
Query: 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA 1098
+E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A
Sbjct: 374 DECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430
Query: 1099 DR-GPEYVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157
+ G E+ + +C H AIR A + + + G AT++ +
Sbjct: 431 GQLGVEFFDEK-LNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486
Query: 1158 VQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209
+R+ T I +++E C + +LP ++ P NV+ V K+L
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL--- 543
Query: 1210 FEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ IG + + V P+LE D+D+
Sbjct: 544 -QKIGPILDNSTLQSEVKPILEKLTQDQDV 572
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
Length = 589
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG 1038
R + QI I +++ + V+ A +I ++ ++ ++ + HL + L
Sbjct: 318 RENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLK 374
Query: 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA 1098
+E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A
Sbjct: 375 DECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 431
Query: 1099 DR-GPEYVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157
+ G E+ + +C H AIR A + + + G AT++ +
Sbjct: 432 GQLGVEFFDEK-LNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 487
Query: 1158 VQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209
+R+ T I +++E C + +LP ++ P NV+ V K+L
Sbjct: 488 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL--- 544
Query: 1210 FEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ IG + + V P+LE D+D+
Sbjct: 545 -QKIGPILDNSTLQSEVKPILEKLTQDQDV 573
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 116/265 (43%), Gaps = 25/265 (9%)
Query: 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE 1043
+ QI I +++ + V+ A +I ++ ++ ++ + HL + L +E PE
Sbjct: 314 MSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDECPE 370
Query: 1044 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GP 1102
V +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A + G
Sbjct: 371 VRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 427
Query: 1103 EYVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ 1162
E+ + +C H AIR A + + + G AT++ +
Sbjct: 428 EFFDEK-LNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD 483
Query: 1163 ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 1214
+R+ T I +++E C + +LP ++ P NV+ V K+L + IG
Sbjct: 484 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL----QKIG 539
Query: 1215 EMGKDYIYA--VTPLLEDALMDRDL 1237
+ + V P+LE D+D+
Sbjct: 540 PILDNSTLQSEVKPILEKLTQDQDV 564
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG 1038
R + QI I +++ + V+ A +I ++ ++ ++ + HL + L
Sbjct: 311 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLK 367
Query: 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA 1098
+E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A
Sbjct: 368 DECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 424
Query: 1099 DR-GPEYVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157
+ G E+ + +C H AIR A + + + G AT++ +
Sbjct: 425 GQLGVEFFDEK-LNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 1158 VQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209
+R+ T I +++E C + +LP ++ P NV+ V K+L
Sbjct: 481 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL--- 537
Query: 1210 FEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ IG + + V P+LE D+D+
Sbjct: 538 -QKIGPILDNSTLQSEVKPILEKLTQDQDV 566
>pdb|3UN7|A Chain A, Crystal Structure Of Pbpa From Mycobacterium Tuberculosis
pdb|3UN7|B Chain B, Crystal Structure Of Pbpa From Mycobacterium Tuberculosis
pdb|3UPN|A Chain A, Structure Of Penicillin-Binding Protein A From M.
Tuberculosis: Imipenem Acyl-Enzyme Complex
pdb|3UPN|B Chain B, Structure Of Penicillin-Binding Protein A From M.
Tuberculosis: Imipenem Acyl-Enzyme Complex
pdb|3UPO|A Chain A, Structure Of Penicillin-Binding Protein A From M.
Tuberculosis: Penicillin G Acyl-Enzyme Complex
pdb|3UPO|B Chain B, Structure Of Penicillin-Binding Protein A From M.
Tuberculosis: Penicillin G Acyl-Enzyme Complex
pdb|3UPP|A Chain A, Structure Of Penicillin-Binding Protein A From M.
Tuberculosis: Ceftrixaone Acyl-Enzyme Complex
pdb|3UPP|B Chain B, Structure Of Penicillin-Binding Protein A From M.
Tuberculosis: Ceftrixaone Acyl-Enzyme Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 765 PTGNKAMAM-ATPT--PGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YK 819
P+ K +A+ ++P+ P LA+ PE +QA W+R D PLT+ + +PPG +K
Sbjct: 138 PSTGKILALVSSPSYDPNLLASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFK 196
Query: 820 VL 821
V+
Sbjct: 197 VI 198
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 281 LAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YKVL 321
LA+ PE +QA W+R D PLT+ + +PPG +KV+
Sbjct: 157 LASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVI 198
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 328 LAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YKVL 368
LA+ PE +QA W+R D PLT+ + +PPG +KV+
Sbjct: 157 LASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVI 198
>pdb|3LO7|A Chain A, Crystal Structure Of Pbpa From Mycobacterium Tuberculosis
pdb|3LO7|B Chain B, Crystal Structure Of Pbpa From Mycobacterium Tuberculosis
Length = 483
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 765 PTGNKAMAM-ATPT--PGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YK 819
P+ K +A+ ++P+ P LA+ PE +QA W+R D PLT+ + +PPG +K
Sbjct: 159 PSTGKILALVSSPSYDPNLLASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFK 217
Query: 820 VL 821
V+
Sbjct: 218 VI 219
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 281 LAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YKVL 321
LA+ PE +QA W+R D PLT+ + +PPG +KV+
Sbjct: 178 LASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVI 219
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 328 LAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YKVL 368
LA+ PE +QA W+R D PLT+ + +PPG +KV+
Sbjct: 178 LASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVI 219
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 112/263 (42%), Gaps = 25/263 (9%)
Query: 986 QICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVL 1045
QI I +++ + V+ A +I ++ ++ ++ + HL + L +E PEV
Sbjct: 318 QILPCIKELVSDANQHVKSALASVIXGLSPILG---KDNTIEHLLPLFLAQLKDECPEVR 374
Query: 1046 GSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GPEY 1104
+I+ L + VIG+ +++ + LLP + + ++ +V+ I+ +A + G E+
Sbjct: 375 LNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYXPLLAGQLGVEF 431
Query: 1105 VSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ-- 1162
+ +C H AIR A + + + G AT++ +
Sbjct: 432 FDEK-LNSLCXAWLVD---HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAXSGDPN 487
Query: 1163 --NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM 1216
+R T I +++E C + LP ++ P NV+ V K+L + IG +
Sbjct: 488 YLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSL----QKIGPI 543
Query: 1217 GKDYIYA--VTPLLEDALMDRDL 1237
+ V P+LE D+D+
Sbjct: 544 LDNSTLQSEVKPILEKLTQDQDV 566
>pdb|3E35|A Chain A, Actinobacteria-Specific Protein Of Unknown Function,
Sco1997
Length = 325
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 594 GIPSLLPFLKAGGVTPAATRWDETPGHPKP--GAETPGAT 631
GIP +P + G+TP +R D PGH P A+ PG+
Sbjct: 143 GIPXGVPHTRPVGITPHGSRTDLVPGHRSPFEEAQVPGSA 182
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 955 FQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNK 998
E+ E V+ML+ F IV Q GK VKP+L L L NK
Sbjct: 542 LSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNK 585
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 863 TSQIFLLTDLLFAYLKRD---YTLENGIQKTIKGKPARLVGASEIINRVVDDLKDENEQY 919
T++I L + LF Y K + ++L I + ++G + NRV +DL+ E
Sbjct: 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVL 122
Query: 920 RKMVMESIE 928
++ V+E ++
Sbjct: 123 KRKVIEKVQ 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,396,762
Number of Sequences: 62578
Number of extensions: 1795847
Number of successful extensions: 4033
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3991
Number of HSP's gapped (non-prelim): 60
length of query: 1359
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1248
effective length of database: 8,027,179
effective search space: 10017919392
effective search space used: 10017919392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)