BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10461
(1359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3
Length = 1304
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/464 (90%), Positives = 441/464 (95%)
Query: 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF 955
A VGA+EII+R+VDDLKDE EQYRKMVME+IEK M NLGAADID +LEEQLIDGILYAF
Sbjct: 841 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF 900
Query: 956 QEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015
QEQTTED VMLNGFGT+VN LGKRVKPYLPQICGT+LWRLNNKSAKVRQQAADLISR AV
Sbjct: 901 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV 960
Query: 1016 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 1075
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM KMTPPIKDLLPRL
Sbjct: 961 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL 1020
Query: 1076 TPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1135
TPILKNRHEKVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKAHKKAIRRATVNT
Sbjct: 1021 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1080
Query: 1136 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
Sbjct: 1081 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1140
Query: 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 1255
LNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A ++HM+LGVY
Sbjct: 1141 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY 1200
Query: 1256 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK 1315
GFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHPARK
Sbjct: 1201 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK 1260
Query: 1316 VRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 1359
VRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1261 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304
Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/289 (86%), Positives = 268/289 (92%), Gaps = 1/289 (0%)
Query: 316 PGYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYI 375
P + P GH+ +MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPAGY+
Sbjct: 363 PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYV 422
Query: 376 PIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVD 435
PIRTPARKLTATPTP+ G TGF +Q ED+T K +++QP GNLPFLKP+D QYFDKLLVD
Sbjct: 423 PIRTPARKLTATPTPLGGM-TGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVD 481
Query: 436 VDEDSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS 495
VDE +LSPEE KERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
Sbjct: 482 VDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS 541
Query: 496 PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA 555
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
Sbjct: 542 PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA 601
Query: 556 KAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKA 604
KAAGLATMISTMRPDIDN+DEYVRNTTARAFAVVASALGIPSLLPFLKA
Sbjct: 602 KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA 650
Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/221 (57%), Positives = 144/221 (65%), Gaps = 46/221 (20%)
Query: 606 GVTPAATRWDETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSI 665
G TP + WD TP H GA TPG TPGHATPG H A SS
Sbjct: 246 GATPGSKIWDPTPSHTPAGAATPGR-------GDTPGHATPG----------HGGATSSA 288
Query: 666 RRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQ 725
R+NRWDETPKTER+TPGH SGWAETP+TDR GGD I ETPTPG +SKR+SRWDETP
Sbjct: 289 RKNRWDETPKTERDTPGHGSGWAETPRTDR---GGDSIGETPTPG--ASKRKSRWDETP- 342
Query: 726 ATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMT 785
A+ G GSTP++TP G TP G AM MATPTPGH+ +MT
Sbjct: 343 ASQMG----------------------GSTPVLTP-GKTPIGTPAMNMATPTPGHIMSMT 379
Query: 786 PEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAA 826
PEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPA
Sbjct: 380 PEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG 420
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 111/210 (52%), Gaps = 27/210 (12%)
Query: 152 NIEAQIRDIQNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGG-GKFEGYVKSIADDDF 210
+IEAQIR+IQ +K + E G VGL +GY+D +IY G +F GYV SIA +
Sbjct: 10 DIEAQIREIQGKKAALDEAQG------VGLDSTGYYDQEIYGGSDSRFAGYVTSIAATEL 63
Query: 211 DYQASFNQ-------NKRSGYTAPAALLNDIAQSEKDYDPFADRRQKTVAEKEDEYRAIR 263
+ K+ GY AP ALLNDI QS + YDPFA+ R +A++EDEY+ R
Sbjct: 64 EDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHR 123
Query: 264 RRMIISPERVDPFAEGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQP 323
R MIISPER+DPFA+G TP+ R ++ R + LT +E E K
Sbjct: 124 RTMIISPERLDPFADG---GKTPDPKMNARTYMDV-MREQHLTKEEREIRQQLAEKA--- 176
Query: 324 PAGHL------AAMTPEQIQAYRWEREIDE 347
AG L AA P + RW++ D+
Sbjct: 177 KAGELKVVNGAAASQPPSKRKRRWDQTADQ 206
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1 YIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLL 60
Y+PIRTPARKLTATPTP+ G TGF +Q ED+T K +++QP GNLPFLKP+D QYFDKLL
Sbjct: 421 YVPIRTPARKLTATPTPLGGM-TGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLL 479
Query: 61 SNGKHCGKTPD 71
+ +P+
Sbjct: 480 VDVDESTLSPE 490
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 167/398 (41%), Gaps = 83/398 (20%)
Query: 279 GHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQP--------------- 323
GH+ +MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL P
Sbjct: 373 GHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLT 432
Query: 324 ---------------------------PAGHLAAMTPEQIQAY-RWEREIDERNRPLTDD 355
P+G+L + P+ IQ + + ++DE +
Sbjct: 433 ATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQ 492
Query: 356 ELEAMFPPGYKVLQ--PP---AGYIPIRTPARKLTATPT-----PIAGTPTGFFIQQEDK 405
+ + K+ PP A I AR+ A P P+ +PT Q+
Sbjct: 493 KERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT-LEDQERHL 551
Query: 406 TAKYMDNQPKGNLPFLKPEDAQYFDKLLVDV-----DEDSLSPEEAKE-----RKIMKLL 455
K +D ++P Y K+LV + DED + E +E K L
Sbjct: 552 LVKVIDRILYKLDDLVRP----YVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA 607
Query: 456 LKIKNGTPPMRKA--ALRQITDKAREFGAGPL-FNQILPLLMSPTLED---QERHLLVKV 509
I P + +R T +A A L +LP L + Q RH +K+
Sbjct: 608 TMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKI 667
Query: 510 IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA---GLATMIST 566
+ +I + + P++ ++ +IE L+DE R I+ LA+AA G+ + S
Sbjct: 668 VQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSV 727
Query: 567 MRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKA 604
++P + + +R + A A+G L+P + A
Sbjct: 728 LKP----LWKGIRQHRGKGLAAFLKAIGY--LIPLMDA 759
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Query: 67 GKTPD--VGSRTYAEVMREQLVRGEEKEVRKKLQDKAKDGTLKAVPTNGEAKAAP--KKR 122
GKTPD + +RTY +VMREQ + EE+E+R++L +KAK G LK V NG A + P K++
Sbjct: 140 GKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVV--NGAAASQPPSKRK 197
Query: 123 GRWDQTSDGDVTPAKKKVAAAEWEK 147
RWDQT+D TP + W++
Sbjct: 198 RRWDQTADQ--TPGATPKKLSSWDQ 220
>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
Length = 1307
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/464 (90%), Positives = 440/464 (94%)
Query: 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF 955
A VGA+EII+R+VDDLKDE EQYRKMVME+IEK M NLGAADID +LEEQLIDGILYAF
Sbjct: 844 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF 903
Query: 956 QEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015
QEQTTED VMLNGFGT+VN LGKRVKPYLPQICGT+LWRLNNKSAKVRQQAADLISR AV
Sbjct: 904 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV 963
Query: 1016 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 1075
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM KMTPPIKDLLPRL
Sbjct: 964 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL 1023
Query: 1076 TPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1135
TPILKNRHEKVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKAHKKAIRRATVNT
Sbjct: 1024 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1083
Query: 1136 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
Sbjct: 1084 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1143
Query: 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 1255
LNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A ++HM+LGVY
Sbjct: 1144 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY 1203
Query: 1256 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK 1315
GFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R++QY LQGLFHPARK
Sbjct: 1204 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQYCLQGLFHPARK 1263
Query: 1316 VRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 1359
VRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY L
Sbjct: 1264 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYTL 1307
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/299 (83%), Positives = 269/299 (89%), Gaps = 3/299 (1%)
Query: 316 PGYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYI 375
P + P GH+ +MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPAGY+
Sbjct: 366 PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYV 425
Query: 376 PIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVD 435
PIRTPARKLTATPTP+ G TGF + ED++ K + +QP GNLPFLKP+D QYFDKLLVD
Sbjct: 426 PIRTPARKLTATPTPLGGL-TGFHMPTEDRSMKSVSDQPSGNLPFLKPDDIQYFDKLLVD 484
Query: 436 VDEDSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS 495
VDE +LSPEE KERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
Sbjct: 485 VDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS 544
Query: 496 PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA 555
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
Sbjct: 545 PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA 604
Query: 556 KAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRW 614
KAAGLATMISTMRPDIDN+DEYVRNTTARAFAVVASALGIPSLLPFLKA V + W
Sbjct: 605 KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA--VCKSKKSW 661
Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/227 (61%), Positives = 159/227 (70%), Gaps = 36/227 (15%)
Query: 606 GVTPAATRWDETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRE------TPSHD 659
G TP++ RWDETPG K G ETPGATP +++WD TP H G ATPGR TP H
Sbjct: 227 GHTPSSLRWDETPGRAK-GNETPGATPGSKIWDPTPSHTPAGVATPGRGDTPGHVTPGHS 285
Query: 660 KAQSSIRRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSR 719
A SS R+NRWDETPKTER+TPGH SGWAETP+TDR GGD I ETPTPG +SKR+SR
Sbjct: 286 GATSSARKNRWDETPKTERDTPGHGSGWAETPRTDR---GGDSIGETPTPG--ASKRKSR 340
Query: 720 WDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPG 779
WDETP A+ G GSTP++TP G TP G AM MATPTPG
Sbjct: 341 WDETP-ASQMG----------------------GSTPVLTP-GKTPIGTPAMNMATPTPG 376
Query: 780 HLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAA 826
H+ +MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPA
Sbjct: 377 HIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG 423
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 90/134 (67%), Gaps = 12/134 (8%)
Query: 152 NIEAQIRDIQNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGG-GKFEGYVKSIA---- 206
+IEAQIR+IQ +K + E G VGL +GYFD +IY G +F GYV SIA
Sbjct: 10 DIEAQIREIQGKKAALDEEEG------VGLDSTGYFDQEIYGGSDSRFTGYVTSIAANEQ 63
Query: 207 -DDDFDYQASFNQNKRSGYTAPAALLNDIAQSEKDYDPFADRRQKTVAEKEDEYRAIRRR 265
DDD D ++ + K+ GY AP ALLNDI QS + YDPFA+ R + +A +EDEY+ RR+
Sbjct: 64 EDDDDDVSSATFEQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIANREDEYKQQRRK 123
Query: 266 MIISPERVDPFAEG 279
MIISPER+DPFA+G
Sbjct: 124 MIISPERLDPFADG 137
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 1 YIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLL 60
Y+PIRTPARKLTATPTP+ G TGF + ED++ K + +QP GNLPFLKP+D QYFDKLL
Sbjct: 424 YVPIRTPARKLTATPTPLGGL-TGFHMPTEDRSMKSVSDQPSGNLPFLKPDDIQYFDKLL 482
Query: 61 SNGKHCGKTPD 71
+ +P+
Sbjct: 483 VDVDESTLSPE 493
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 167/398 (41%), Gaps = 83/398 (20%)
Query: 279 GHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQP--------------- 323
GH+ +MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL P
Sbjct: 376 GHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLT 435
Query: 324 ---------------------------PAGHLAAMTPEQIQAY-RWEREIDERNRPLTDD 355
P+G+L + P+ IQ + + ++DE +
Sbjct: 436 ATPTPLGGLTGFHMPTEDRSMKSVSDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQ 495
Query: 356 ELEAMFPPGYKVLQ--PP---AGYIPIRTPARKLTATPT-----PIAGTPTGFFIQQEDK 405
+ + K+ PP A I AR+ A P P+ +PT Q+
Sbjct: 496 KERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT-LEDQERHL 554
Query: 406 TAKYMDNQPKGNLPFLKPEDAQYFDKLLVDV-----DEDSLSPEEAKE-----RKIMKLL 455
K +D ++P Y K+LV + DED + E +E K L
Sbjct: 555 LVKVIDRILYKLDDLVRP----YVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA 610
Query: 456 LKIKNGTPPMRKA--ALRQITDKAREFGAGPL-FNQILPLLMSPTLED---QERHLLVKV 509
I P + +R T +A A L +LP L + Q RH +K+
Sbjct: 611 TMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKI 670
Query: 510 IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA---GLATMIST 566
+ +I + + P++ ++ +IE L+DE R I+ LA+AA G+ + S
Sbjct: 671 VQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSV 730
Query: 567 MRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKA 604
++P + + +R + A A+G L+P + A
Sbjct: 731 LKP----LWKGIRQHRGKGLAAFLKAIGY--LIPLMDA 762
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 67 GKTPD--VGSRTYAEVMREQLVRGEEKEVRKKLQDKAKDGTLKAVPTNGEAKAA---PKK 121
GKTPD + +RT+ +VM+EQ + EE+E+R+++ +KAK G LK V + + AA K+
Sbjct: 138 GKTPDPKLNARTFKDVMQEQYLTKEEREIRQQIAEKAKSGDLKVVNGSSASSAAQPPSKR 197
Query: 122 RGRWDQTSDGDVTPAKKKVAAAEWEK 147
+ RWDQT GD TP + W++
Sbjct: 198 KRRWDQT--GDQTPGSTPKKLSSWDQ 221
>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1
Length = 1304
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/464 (90%), Positives = 441/464 (95%)
Query: 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF 955
A VGA+EII+R+VDDLKDE EQYRKMVME+IEK M NLGAADID +LEEQLIDGILYAF
Sbjct: 841 ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF 900
Query: 956 QEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015
QEQTTED VMLNGFGT+VN LGKRVKPYLPQICGT+LWRLNNKSAKVRQQAADLISR AV
Sbjct: 901 QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV 960
Query: 1016 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 1075
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM KMTPPIKDLLPRL
Sbjct: 961 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL 1020
Query: 1076 TPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1135
TPILKNRHEKVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKAHKKAIRRATVNT
Sbjct: 1021 TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1080
Query: 1136 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
Sbjct: 1081 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1140
Query: 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 1255
LNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A ++HM+LGVY
Sbjct: 1141 LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY 1200
Query: 1256 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK 1315
GFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY LQGLFHPARK
Sbjct: 1201 GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK 1260
Query: 1316 VRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 1359
VRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct: 1261 VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304
Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/289 (86%), Positives = 268/289 (92%), Gaps = 1/289 (0%)
Query: 316 PGYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYI 375
P + P GH+ +MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPAGY+
Sbjct: 363 PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYV 422
Query: 376 PIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVD 435
PIRTPARKLTATPTP+ G TGF +Q ED+T K +++QP GNLPFLKP+D QYFDKLLVD
Sbjct: 423 PIRTPARKLTATPTPLGGM-TGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVD 481
Query: 436 VDEDSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS 495
VDE +LSPEE KERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
Sbjct: 482 VDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS 541
Query: 496 PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA 555
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
Sbjct: 542 PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA 601
Query: 556 KAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKA 604
KAAGLATMISTMRPDIDN+DEYVRNTTARAFAVVASALGIPSLLPFLKA
Sbjct: 602 KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA 650
Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/221 (57%), Positives = 144/221 (65%), Gaps = 46/221 (20%)
Query: 606 GVTPAATRWDETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSI 665
G TP + WD TP H GA TPG TPGHATPG H A SS
Sbjct: 246 GATPGSKIWDPTPSHTPAGAATPGR-------GDTPGHATPG----------HGGATSSA 288
Query: 666 RRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQ 725
R+NRWDETPKTER+TPGH SGWAETP+TDR GGD I ETPTPG +SKR+SRWDETP
Sbjct: 289 RKNRWDETPKTERDTPGHGSGWAETPRTDR---GGDSIGETPTPG--ASKRKSRWDETP- 342
Query: 726 ATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMT 785
A+ G GSTP++TP G TP G AM MATPTPGH+ +MT
Sbjct: 343 ASQMG----------------------GSTPVLTP-GKTPIGTPAMNMATPTPGHIMSMT 379
Query: 786 PEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAA 826
PEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPA
Sbjct: 380 PEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG 420
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 111/210 (52%), Gaps = 27/210 (12%)
Query: 152 NIEAQIRDIQNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGG-GKFEGYVKSIADDDF 210
+IEAQIR+IQ +K + E G VGL +GY+D +IY G +F GYV SIA +
Sbjct: 10 DIEAQIREIQGKKAALDEAQG------VGLDSTGYYDQEIYGGSDSRFAGYVTSIAATEL 63
Query: 211 DYQASFNQ-------NKRSGYTAPAALLNDIAQSEKDYDPFADRRQKTVAEKEDEYRAIR 263
+ K+ GY AP ALLNDI QS + YDPFA+ R +A++EDEY+ R
Sbjct: 64 EDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHR 123
Query: 264 RRMIISPERVDPFAEGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQP 323
R MIISPER+DPFA+G TP+ R ++ R + LT +E E K
Sbjct: 124 RTMIISPERLDPFADG---GKTPDPKMNARTYMDV-MREQHLTKEEREIRQQLAEKA--- 176
Query: 324 PAGHL------AAMTPEQIQAYRWEREIDE 347
AG L AA P + RW++ D+
Sbjct: 177 KAGELKVVNGAAASQPPSKRKRRWDQTADQ 206
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1 YIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLL 60
Y+PIRTPARKLTATPTP+ G TGF +Q ED+T K +++QP GNLPFLKP+D QYFDKLL
Sbjct: 421 YVPIRTPARKLTATPTPLGGM-TGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLL 479
Query: 61 SNGKHCGKTPD 71
+ +P+
Sbjct: 480 VDVDESTLSPE 490
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 167/398 (41%), Gaps = 83/398 (20%)
Query: 279 GHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQP--------------- 323
GH+ +MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL P
Sbjct: 373 GHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLT 432
Query: 324 ---------------------------PAGHLAAMTPEQIQAY-RWEREIDERNRPLTDD 355
P+G+L + P+ IQ + + ++DE +
Sbjct: 433 ATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQ 492
Query: 356 ELEAMFPPGYKVLQ--PP---AGYIPIRTPARKLTATPT-----PIAGTPTGFFIQQEDK 405
+ + K+ PP A I AR+ A P P+ +PT Q+
Sbjct: 493 KERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT-LEDQERHL 551
Query: 406 TAKYMDNQPKGNLPFLKPEDAQYFDKLLVDV-----DEDSLSPEEAKE-----RKIMKLL 455
K +D ++P Y K+LV + DED + E +E K L
Sbjct: 552 LVKVIDRILYKLDDLVRP----YVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA 607
Query: 456 LKIKNGTPPMRKA--ALRQITDKAREFGAGPL-FNQILPLLMSPTLED---QERHLLVKV 509
I P + +R T +A A L +LP L + Q RH +K+
Sbjct: 608 TMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKI 667
Query: 510 IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA---GLATMIST 566
+ +I + + P++ ++ +IE L+DE R I+ LA+AA G+ + S
Sbjct: 668 VQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSV 727
Query: 567 MRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKA 604
++P + + +R + A A+G L+P + A
Sbjct: 728 LKP----LWKGIRQHRGKGLAAFLKAIGY--LIPLMDA 759
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Query: 67 GKTPD--VGSRTYAEVMREQLVRGEEKEVRKKLQDKAKDGTLKAVPTNGEAKAAP--KKR 122
GKTPD + +RTY +VMREQ + EE+E+R++L +KAK G LK V NG A + P K++
Sbjct: 140 GKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVV--NGAAASQPPSKRK 197
Query: 123 GRWDQTSDGDVTPAKKKVAAAEWEK 147
RWDQT+D TP + W++
Sbjct: 198 RRWDQTADQ--TPGATPKKLSSWDQ 220
>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=prp10 PE=1 SV=3
Length = 1205
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/455 (67%), Positives = 378/455 (83%)
Query: 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF 955
A+ VG+ +I+ RVV++ KDE+E YRKM E+++K + +LG ++ID RLEE L+DG+L+AF
Sbjct: 742 AQQVGSRQIVERVVNNFKDESEPYRKMTAETVDKVIGSLGVSEIDERLEELLLDGVLFAF 801
Query: 956 QEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015
QEQ+ E+ V+L F T+VN LG R KPYLPQI TIL+RLNNKSA VR+QAADL+S I +
Sbjct: 802 QEQSVEEKVILTCFSTVVNALGTRCKPYLPQIVSTILYRLNNKSANVREQAADLVSSITI 861
Query: 1016 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 1075
V+K C EE LM LGVVLYEYLGEEYPEVLGSILGA+KAIV+V+GM+ M PPI+DLLPRL
Sbjct: 862 VLKACGEEALMRKLGVVLYEYLGEEYPEVLGSILGAIKAIVSVVGMSSMQPPIRDLLPRL 921
Query: 1076 TPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1135
TPIL+NRHEKVQEN IDLVG+IADRG EYVSAREWMRICFEL+++LKAHKK+IRRA VNT
Sbjct: 922 TPILRNRHEKVQENTIDLVGKIADRGSEYVSAREWMRICFELIDMLKAHKKSIRRAAVNT 981
Query: 1136 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195
FGYI+KAIGP DVLATLLNNLKVQERQNRVCTTVAIAIVAETC PFTV+PALM +YR PE
Sbjct: 982 FGYISKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCMPFTVVPALMADYRTPE 1041
Query: 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 1255
+NVQNGVLK+L+F+FEYIGE +DY+YA+TPLL DALMDRD VHRQTA + IKH++LG
Sbjct: 1042 MNVQNGVLKSLAFMFEYIGEQARDYVYAITPLLADALMDRDAVHRQTAASVIKHLSLGCV 1101
Query: 1256 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK 1315
G G EDA+ HLLN +WPNI E SPH++ A + ++G+R +G I+ Y++QGLFHP+RK
Sbjct: 1102 GLGVEDAMIHLLNILWPNILEESPHVINAVREGIDGIRNCIGVGPIMAYLVQGLFHPSRK 1161
Query: 1316 VRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVY 1350
VR+ YW YNS Y+ DA++ YP + +D N Y
Sbjct: 1162 VRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNY 1196
Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 211/465 (45%), Positives = 275/465 (59%), Gaps = 67/465 (14%)
Query: 205 IADDDFDYQASFNQNKR----SGYTAPAALLNDIAQSEKDYDPFADRR-QKTVAEKEDEY 259
I+ D+ DY+ + + N Y AP LLN+ A ++ YDP +R+ +K + ++E +Y
Sbjct: 89 ISQDEDDYKRTNDVNDSYRLVRQYEAPKELLNEYA--DESYDPMQERQSKKQIQDRESDY 146
Query: 260 RAIRRRMIISPERVDPF------AEGHLAAMTPEQIQAYRWER----EIDERNRPLTDDE 309
+ R ++P RVD F + G A Q++ + ER E+++R R T E
Sbjct: 147 QKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEERRVHMELNQRRREGTLKE 206
Query: 310 LEA----------MFPPGYKVLQPPAGHLAAMTPEQI-------QAYRWERE-----IDE 347
+E + ++ Q P P + + RW++ I E
Sbjct: 207 VEEEESISDKKRELELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAPENFTISE 266
Query: 348 R------NRPLTDDEL----EAMFPP----------------GYKVLQPPAGYIPIRTPA 381
+ L + E+ E + PP GY +L+PP GY+ P
Sbjct: 267 HVIENGISEDLINKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGYLESIHPE 326
Query: 382 --RKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVDVDED 439
+K T T +++E A + G+L F K ED +YF KLL DE
Sbjct: 327 LLQKGTTLDTYHVPQEQELPLEKELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEA 386
Query: 440 SLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLE 499
L+ E +ERKI++LLLK+KNGTPPMRK+ALRQ+TD+AR+FGA LFNQILPLLM TLE
Sbjct: 387 KLTIAELRERKILRLLLKVKNGTPPMRKSALRQLTDQARDFGAAALFNQILPLLMERTLE 446
Query: 500 DQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG 559
DQERHLLVKVIDRILYKLDDLVRP+ HKILVVIEPLLIDEDYYAR EGREIISNLAKA+G
Sbjct: 447 DQERHLLVKVIDRILYKLDDLVRPFTHKILVVIEPLLIDEDYYARAEGREIISNLAKASG 506
Query: 560 LATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKA 604
LA MI+TMRPDID++DEYVRNTTARAF+VVASALG+P+LLPFLKA
Sbjct: 507 LAHMIATMRPDIDHVDEYVRNTTARAFSVVASALGVPALLPFLKA 551
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 54 QYFDKLLSNGKHCGKTPD---VGSRTYAEVMREQLVRGEEKEVRKKLQDKAKDGTLKAVP 110
Q +D+ L+ + PD R+YAEVMR+ + EE+ V +L + ++GTLK V
Sbjct: 149 QRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEERRVHMELNQRRREGTLKEVE 208
Query: 111 --------------TNGEAKAAPKKRGRWDQT--SDGDVTPAKKKVAAAEWEK 147
N E P KR RWDQ S V+ K++ + W+K
Sbjct: 209 EEESISDKKRELELNNTEISQKP-KRSRWDQAPPSVTQVSTTKRR---SRWDK 257
>sp|P49955|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HSH155 PE=1 SV=1
Length = 971
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 250/464 (53%), Positives = 323/464 (69%), Gaps = 2/464 (0%)
Query: 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF 955
A+ +G S I++++ L+DE E +R M + ++ +T++ LG AD+D RLE +LID +L AF
Sbjct: 510 AKKLGCSYTIDKLLTPLRDEAEPFRTMAVHAVTRTVNLLGTADLDERLETRLIDALLIAF 569
Query: 956 QEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015
QEQT D ++ GFG + L R+KP+L I TIL L +K+ VRQ AADL + +
Sbjct: 570 QEQTNSDSIIFKGFGAVTVSLDIRMKPFLAPIVSTILNHLKHKTPLVRQHAADLCAILIP 629
Query: 1016 VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 1075
V+K C E +++ L ++LYE LGE YPEVLGSI+ A+ I +V+ + K+ PPI +LP L
Sbjct: 630 VIKNCHEFEMLNKLNIILYESLGEVYPEVLGSIINAMYCITSVMDLDKLQPPINQILPTL 689
Query: 1076 TPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1135
TPIL+N+H KV+ N I VG I P Y +EWMRICFELLELLK+ K IRR+ T
Sbjct: 690 TPILRNKHRKVEVNTIKFVGLIGKLAPTYAPPKEWMRICFELLELLKSTNKEIRRSANAT 749
Query: 1136 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195
FG+IA+AIGPHDVL LLNNLKVQERQ RVCT VAI IVA+ C P+ VLP +MNEY PE
Sbjct: 750 FGFIAEAIGPHDVLVALLNNLKVQERQLRVCTAVAIGIVAKVCGPYNVLPVIMNEYTTPE 809
Query: 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 1255
NVQNGVLKA+SF+FEYIG M KDYIY +TPLLEDAL DRDLVHRQTA I H+AL
Sbjct: 810 TNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLEDALTDRDLVHRQTASNVITHLALNCS 869
Query: 1256 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK 1315
G G EDA HL+N + PNIFETSPH + ++ +E L ALGP + Y+ GLFHPA+
Sbjct: 870 GTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGLEALSQALGPGLFMNYIWAGLFHPAKN 929
Query: 1316 VRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 1359
VR +W++YN++Y+ QDA++ YP + D Y+ ELD VL
Sbjct: 930 VRKAFWRVYNNMYVMYQDAMVPFYP-VTPDNNEEYIE-ELDLVL 971
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 144/204 (70%)
Query: 402 QEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERKIMKLLLKIKNG 461
+E+ + ++ + +L F KP D +YF ++ D L+ +E KER + LLLKIKNG
Sbjct: 117 KENSDSALVNVEGIHDLMFFKPSDHKYFADVISKKPIDELNKDEKKERTLSMLLLKIKNG 176
Query: 462 TPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV 521
R+ ++R +TDKA FG +FN++LP+L+ +LEDQERHL++K IDR+LY+L DL
Sbjct: 177 NTASRRTSMRILTDKAVTFGPEMIFNRLLPILLDRSLEDQERHLMIKTIDRVLYQLGDLT 236
Query: 522 RPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNT 581
+PYVHKILVV PLLIDED R G+EII+NL+ AGL T+++ MRPDI+N DEYVRN
Sbjct: 237 KPYVHKILVVAAPLLIDEDPMVRSTGQEIITNLSTVAGLKTILTVMRPDIENEDEYVRNV 296
Query: 582 TARAFAVVASALGIPSLLPFLKAG 605
T+RA AVVA ALG+ LLPF+ A
Sbjct: 297 TSRAAAVVAKALGVNQLLPFINAA 320
>sp|Q8CHJ1|PIGU_RAT Phosphatidylinositol glycan anchor biosynthesis class U protein
OS=Rattus norvegicus GN=Pigu PE=1 SV=3
Length = 435
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 827 CFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENG 886
C I CS+ P +WHLWIY SAN+NF++ +TL F QI L++D +A+L+R+Y L +G
Sbjct: 360 CIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHG 419
Query: 887 IQKTIK-GKPARLV 899
+ T K G A LV
Sbjct: 420 LYLTAKDGTEAMLV 433
>sp|Q8K358|PIGU_MOUSE Phosphatidylinositol glycan anchor biosynthesis class U protein
OS=Mus musculus GN=Pigu PE=2 SV=4
Length = 434
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 827 CFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENG 886
C I CS+ P +WHLWIY SAN+NF++ +TL F QI L++D +A+L+R+Y L +G
Sbjct: 359 CIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHG 418
Query: 887 IQKTIK-GKPARLV 899
+ T K G A LV
Sbjct: 419 LYLTAKDGTEAMLV 432
>sp|Q9H490|PIGU_HUMAN Phosphatidylinositol glycan anchor biosynthesis class U protein
OS=Homo sapiens GN=PIGU PE=1 SV=3
Length = 435
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 827 CFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENG 886
C I CS+ P +WHLWIY SAN+NF++ +TL F QI L++D +A+L+R+Y L +G
Sbjct: 360 CIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHG 419
Query: 887 IQKTIK-GKPARLV 899
+ T K G A LV
Sbjct: 420 LYLTAKDGTEAMLV 433
>sp|Q8CHJ0|PIGU_CRIGR Phosphatidylinositol glycan anchor biosynthesis class U protein
OS=Cricetulus griseus GN=PIGU PE=1 SV=3
Length = 435
Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 827 CFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENG 886
C + CS+ P +WHLWIY SAN+NF++ +TL F QI L++D +A+L+R+Y L +G
Sbjct: 360 CIIVVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHG 419
Query: 887 IQKTIK-GKPARLV 899
+ T K G A LV
Sbjct: 420 LYLTAKDGTEAMLV 433
>sp|P41733|CDC91_YEAST GPI transamidase component GAB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GAB1 PE=1 SV=1
Length = 394
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 816 PGYKVLQPP--AACFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLL 873
P + L+ P +A F+ + AP +HLW+ S N+NF++ ++L +A + +L DL
Sbjct: 313 PLFGYLRYPIISALLFLHAIVLAPIFYHLWVVLGSGNSNFFYAISLVYALAIASILVDLN 372
Query: 874 FAYLKRDYTLENGI 887
+A L+ +Y +NGI
Sbjct: 373 WAMLRIEY--DNGI 384
>sp|Q9UT08|2AAA_SCHPO Protein phosphatase PP2A regulatory subunit A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=paa1 PE=3 SV=1
Length = 590
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 23/272 (8%)
Query: 976 LGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYE 1035
L KR+ L +I I +N+ + VR A L I + +EK +L + E
Sbjct: 315 LDKRI--VLEEIIPVIQELINDPAQHVR---AALGMNIGALAPQLGKEKTTEYLLPMFLE 369
Query: 1036 YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG 1095
L +E PEV +I+ L+ + V+G+ ++ + LLP + + +++ +V+ ID +
Sbjct: 370 LLKDENPEVRLNIISKLEVVNKVVGIELLS---QSLLPAIVTLAEDKQWRVRLAIIDYIP 426
Query: 1096 RIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLL- 1153
+A + G E+ + + +C LE H +IR A + + + G T++
Sbjct: 427 LLAQQLGVEFFNEK-MGNLCMSWLE---DHVYSIREAAIKNLRKLTEIFGLEWATETIIP 482
Query: 1154 NNLKVQERQN---RVCTTVAIAIVAETCSPFT----VLPALMNEYRVPELNVQNGVLKAL 1206
L ++ N R+ T AI+ +A + +LP L P N++ V KA
Sbjct: 483 KFLAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQLVNDPIPNIRFNVAKAF 542
Query: 1207 SFLFEYIGEMGKDYIY--AVTPLLEDALMDRD 1236
L + G +Y + PLLE D D
Sbjct: 543 EVLKPVLAAGGDSTVYEQQIIPLLEQLTKDND 574
>sp|P31383|2AAA_YEAST Protein phosphatase PP2A regulatory subunit A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TPD3 PE=1 SV=3
Length = 635
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 106/236 (44%), Gaps = 29/236 (12%)
Query: 966 LNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKL 1025
++GF +N + LP + + ++S VR A I+ I +++ ++++
Sbjct: 344 VSGFAKFLNDPSIILNKILPAVQNLSM----DESETVRSALASKITNIVLLLN---KDQV 396
Query: 1026 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK 1085
+ + +L L +E+P+V +I+ +LK + +VIG+ ++ LLP +T + K+ + +
Sbjct: 397 INNFLPILLNMLRDEFPDVRLNIIASLKVVNDVIGIELLSDS---LLPAITELAKDVNWR 453
Query: 1086 VQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP 1145
V+ I+ + +A++ ++ +C L L +IR A VN + + G
Sbjct: 454 VRMAIIEYIPILAEQLGMQFFDQQLSDLC---LSWLWDTVYSIREAAVNNLKRLTEIFGS 510
Query: 1146 ---HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV 1198
D + + L +Q +N V S FT+L AL V L+V
Sbjct: 511 DWCRDEIISRLLKFDLQLLENFV-------------SRFTILSALTTLVPVVSLDV 553
>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1
Length = 588
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI 1055
++ S VR A +I +A ++ ++ + HL + L +E+P+V +I+ L +
Sbjct: 329 SDSSQHVRSALASVIMGMAPILG---KDSTIEHLLPIFLSLLKDEFPDVRLNIISKLDQV 385
Query: 1056 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF 1115
VIG+ ++ + LLP + + ++RH +V+ I+ V +A + + +C
Sbjct: 386 NQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYVPLLASQLGIGFFDDKLGALC- 441
Query: 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGP----HDVLATLLNNLKVQERQNRVCTTVAI 1171
++ L+ +IR A N +A+ GP ++ +L+ + +R+ AI
Sbjct: 442 --MQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNNPHYLHRMMVLRAI 499
Query: 1172 AIVAE------TCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 1215
+++A TCS F + ++ RVP N++ V K L L + +
Sbjct: 500 SLMAPVMGSEITCSKFLPVVVEASKDRVP--NIKFNVAKLLQSLIPIVDQ 547
>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2
Length = 587
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI 1055
++ S VR A +I +A V+ ++ + HL + L +E+P+V +I+ L +
Sbjct: 329 SDSSQHVRSALASVIMGMAPVLG---KDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQV 385
Query: 1056 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF 1115
VIG+ ++ + LLP + + ++RH +V+ I+ + +A + + +C
Sbjct: 386 NQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442
Query: 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGP-----HDV--LATLLNNLKVQERQN--RVC 1166
+ L+ K H +IR A N +A+ GP H V + ++NN R R
Sbjct: 443 QWLQ-DKVH--SIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAV 499
Query: 1167 TTVAIAIVAE-TCSPFTVLPALM--NEYRVPELNVQNGVLKALSFLFEYIGE 1215
+ +A + +E TCS LP +M ++ RVP N++ V K L L + +
Sbjct: 500 SLLAPVMGSEITCSKL--LPVVMTASKDRVP--NIKFNVAKVLQSLIPIVDQ 547
>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2
Length = 587
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI 1055
++ S VR A +I +A V+ ++ + HL + L +E+P+V +I+ L +
Sbjct: 329 SDSSQHVRSALASVIMGMAPVLG---KDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQV 385
Query: 1056 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF 1115
VIG+ ++ + LLP + + ++RH +V+ I+ + +A + + +C
Sbjct: 386 NQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDEKLGALCM 442
Query: 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGP-----HDV--LATLLNNLKVQERQN--RVC 1166
+ L+ K H +IR A N +A+ GP H V + ++NN R R
Sbjct: 443 QWLQ-DKVH--SIREAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLYRMTILRAV 499
Query: 1167 TTVAIAIVAE-TCSPFTVLPALM--NEYRVPELNVQNGVLKALSFLFEYIGE 1215
+ +A + +E TCS +LPA++ ++ RVP N++ V K + L + +
Sbjct: 500 SLLAPVMGSEITCS--KLLPAVITASKDRVP--NIKFNVAKMMQSLIPIVDQ 547
>sp|P11682|APOB_CHICK Apolipoprotein B (Fragment) OS=Gallus gallus GN=APOB PE=2 SV=1
Length = 433
Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 43/232 (18%)
Query: 899 VGASEIINR---VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLE--EQLID---- 949
V ASE I R V+D +K+ K + E I +T L AD +L +Q++
Sbjct: 50 VPASETILRGRNVLDQIKE----MLKHLQEKIRQTFVTLQEADFAGKLNRLKQVVQKTFQ 105
Query: 950 ---GILYAFQEQTTEDV----------VMLNGFGTIVNQLGKRVKPYLPQICGTILWRLN 996
++ + Q + ED+ M + + + L + VK Y+ QI
Sbjct: 106 KAGNMVRSLQSKNFEDIKVQMQQLYKDAMASDYAHKLRSLAENVKKYISQI--------K 157
Query: 997 NKSAKVRQQAADLISRIAVVMKTCQEEKLM-GHLGVVLYEYLGEEYPEVLGSILGALKAI 1055
N S K Q+ ++ + ++ + +K +EE LG + +Y EV +LG LK +
Sbjct: 158 NFSQKTLQKLSENLQQLVLYIKALREEYFDPTTLGWSV------KYYEVEDKVLGLLKNL 211
Query: 1056 VN--VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYV 1105
++ VI + + DL+ RLT ++ E ++ DL+ + +G + V
Sbjct: 212 MDTLVIWYNEYAKDLSDLVTRLTDQVRELVENYRQEYYDLITDVEGKGRQKV 263
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1
OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
Length = 1041
Score = 40.8 bits (94), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 65/173 (37%), Gaps = 29/173 (16%)
Query: 616 ETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDETPK 675
ETP HP P TP R ATP H G TP R+ + S R+ W++
Sbjct: 777 ETPMHPSRTPLHPYMTP-MRDSGATPIHD--GMRTPMRDRAWNPYTPMSPPRDNWED--- 830
Query: 676 TERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPS 735
G+ W +P+ P E PTPG S W TP + S A TP
Sbjct: 831 ------GNPGSWGTSPQYQPGSPPS-RAYEAPTPG-------SGWASTPGGSYSDAGTPR 876
Query: 736 ------AATPGGMTPSTP---ITPHVGSTPLMTPSGVTPTGNKAMAMATPTPG 779
A P PSTP +TP S TP G T + + +P G
Sbjct: 877 DHGSAYANAPSPYLPSTPGQPMTPSSASYLPGTPGGQPMTPGTGLDVMSPVIG 929
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520
PE=1 SV=1
Length = 349
Score = 38.9 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Query: 639 ATPGHATPGAATP--GRETPSHDKAQSSIRRNRWDETPKTERETPGHSSGWAETPKTDRA 696
A PG +TPG+ TP G +P S TP +P SS A +P T
Sbjct: 143 AAPGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSPKSSS--AVSPATS-- 198
Query: 697 GPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTP 756
P G + ++ +P ++ + T +PS A P + P M P + T S P
Sbjct: 199 -PPGSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSA--PMTSPPAPMAPKSSSTIPPSSAP 255
Query: 757 LMTPSGVTPTGNKAMAMATPT 777
+ +P G + + +PT
Sbjct: 256 MTSPPGSMAPKSSSPVSNSPT 276
Score = 38.5 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 63/180 (35%), Gaps = 19/180 (10%)
Query: 618 PGHPKPGAETP--GATPSTRLWDATPGHATPGAATP--GRETPSHDKAQSSIRRNRWDET 673
PG PG+ TP GA +P + PG+ TP G +P A S
Sbjct: 145 PGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSPKSSSAVSPATSPPGSMA 204
Query: 674 PKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMT 733
PK+ +S A T P + P P S P +P G+M
Sbjct: 205 PKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSSAPMTSPPGSMA 264
Query: 734 PSAATPGGMTPSTPITPHVG-------------STPLMTPSGVTPTGNKAMAMATPTPGH 780
P +++P +P+ ++P + S M PSG P+ ++ PG
Sbjct: 265 PKSSSPVSNSPT--VSPSLAPGGSTSSSPSDSPSGSAMGPSGDGPSAAGDISTPAGAPGQ 322
>sp|Q11AE3|DNAA_TRIEI Chromosomal replication initiator protein DnaA OS=Trichodesmium
erythraeum (strain IMS101) GN=dnaA PE=3 SV=1
Length = 456
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 1005 QAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 1064
QA DL +R+A+++K + E ++ V+ EY+ YP + + GAL +V I ++ +
Sbjct: 282 QAPDLETRMAILLKKSEYENMVLPRDVI--EYIATRYPSNIRELEGALTRVVTYISISGL 339
Query: 1065 TPPIKDLLPRLTP 1077
++++ P L P
Sbjct: 340 PMTVENIAPILNP 352
>sp|P0CR70|SPT5_CRYNJ Transcription elongation factor SPT5 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT5 PE=3 SV=1
Length = 1152
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 85/229 (37%), Gaps = 36/229 (15%)
Query: 573 NIDEYVRNTTARAFAVVASALG-IPSLLPFLKAGGVTPAATRWDETPGHPKPGAETPGAT 631
N +Y N A A+ S G P+L+ GG TPAA R+ +TP +P G T
Sbjct: 792 NAGQYDINPYGGATAMHPSMGGQTPALM-----GGRTPAA-RFGQTP-NPYAAGVQNGKT 844
Query: 632 P---STRLWDATP------GHATPGAATPGRETPSHDKAQSSIRRNRWDETPKTERETPG 682
P + + TP G TP G +TP++ A +TP
Sbjct: 845 PNPYAAGVGGKTPSAANASGGKTPAWGASGGKTPAYGMASGG--------------KTPA 890
Query: 683 HSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMT-----PSAA 737
+ +TP P G TP G S + A PS + P+ A
Sbjct: 891 YGMQGGKTPNAYAMAPPGPSGGRTPAYGAYGRPEASGSRPSVMAPPSAPYSAPYSAPTPA 950
Query: 738 TPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMTP 786
G TP+ P P+ TP P+ +++ PTPG A + P
Sbjct: 951 GNGAPTPAIPGNPYTAPTPYGAPTPYAAPTPGMPSLSAPTPGPGAGIAP 999
>sp|P0CR71|SPT5_CRYNB Transcription elongation factor SPT5 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=SPT5 PE=3
SV=1
Length = 1152
Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 85/229 (37%), Gaps = 36/229 (15%)
Query: 573 NIDEYVRNTTARAFAVVASALG-IPSLLPFLKAGGVTPAATRWDETPGHPKPGAETPGAT 631
N +Y N A A+ S G P+L+ GG TPAA R+ +TP +P G T
Sbjct: 792 NAGQYDINPYGGATAMHPSMGGQTPALM-----GGRTPAA-RFGQTP-NPYAAGVQNGKT 844
Query: 632 P---STRLWDATP------GHATPGAATPGRETPSHDKAQSSIRRNRWDETPKTERETPG 682
P + + TP G TP G +TP++ A +TP
Sbjct: 845 PNPYAAGVGGKTPSAANASGGKTPAWGASGGKTPAYGMASGG--------------KTPA 890
Query: 683 HSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMT-----PSAA 737
+ +TP P G TP G S + A PS + P+ A
Sbjct: 891 YGMQGGKTPNAYAMAPPGPSGGRTPAYGAYGRPEASGSRPSVMAPPSAPYSAPYSAPTPA 950
Query: 738 TPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMTP 786
G TP+ P P+ TP P+ +++ PTPG A + P
Sbjct: 951 GNGAPTPAIPGNPYTAPTPYGAPTPYAAPTPGMPSLSAPTPGPGAGIAP 999
>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum
sativum PE=2 SV=1
Length = 395
Score = 38.1 bits (87), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 26/233 (11%)
Query: 996 NNKSAKVRQQAADLISRIAVVM-KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKA 1054
+ S VR A +I +A V+ K E+L+ + L +E+P+V +I+ L
Sbjct: 136 TDSSQHVRSALASVIMGMAPVLGKDATIEQLLP----IFLSLLKDEFPDVRLNIISKLDQ 191
Query: 1055 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GPEYVSAREWMRI 1113
+ VIG+ ++ + LLP + + ++RH +V+ I+ + +A + G + + I
Sbjct: 192 VNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALI 248
Query: 1114 CFELLELLKAHKKAIRRATVNTFGYI-AKAIGP----HDVLATLLNNLKVQERQNRVCTT 1168
++ LK + +IR A N + A+ GP ++ +L+ + R+
Sbjct: 249 ----MQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYRMTIL 304
Query: 1169 VAIAIVA----ETCSPFTVLPALMNEY--RVPELNVQNGVLKALSFLFEYIGE 1215
AI+++A + +LP ++N RVP N++ V K L L + E
Sbjct: 305 HAISLLAPVLGSEITSTNLLPLVVNASKDRVP--NIKFNVAKVLQSLIPIVDE 355
>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2
SV=1
Length = 602
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 90/200 (45%), Gaps = 15/200 (7%)
Query: 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE 1043
+ QI I +++ + V+ A +I ++ ++ +E + HL + L +E PE
Sbjct: 336 MNQILPCIKELVSDTNQHVKSALASVIMGLSTILG---KENTIEHLLPLFLAQLKDECPE 392
Query: 1044 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GP 1102
V +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A + G
Sbjct: 393 VRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 449
Query: 1103 EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ 1162
E+ + +C + L H AIR A N + + G T++ + V
Sbjct: 450 EFFDEK-LNSLC---MAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMAND 505
Query: 1163 ----NRVCTTVAIAIVAETC 1178
+R+ T I +++E C
Sbjct: 506 PNYLHRMTTLFCINVLSEAC 525
>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4
Length = 589
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 119/270 (44%), Gaps = 25/270 (9%)
Query: 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG 1038
R + QI I +++ + V+ A +I ++ ++ ++ + HL + L
Sbjct: 318 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLK 374
Query: 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA 1098
+E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+ I+ + +A
Sbjct: 375 DECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVRLAIIEYMPLLA 431
Query: 1099 DR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157
+ G E+ + +C + L H AIR A + + + G AT++ +
Sbjct: 432 GQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 487
Query: 1158 VQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209
+R+ T I +++E C + +LP ++ P NV+ V K+L
Sbjct: 488 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL--- 544
Query: 1210 FEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ IG + + V P+LE D+D+
Sbjct: 545 -QKIGPILDNSTLQSEVKPILEKLTQDQDV 573
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus
GN=Pkd1l3 PE=2 SV=2
Length = 2201
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 615 DETPGHPKPG---AETPGATPSTRLWDATPGHATP---GAATPGRETPSHDKAQSSIRRN 668
ETP P +ETP ++ T++ TP +P + TPG +P+ + + +
Sbjct: 426 SETPASSSPTQVTSETPASSSPTQVTSDTPASNSPPQGTSDTPGFSSPTQVTTATLVSSS 485
Query: 669 RWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATP 728
P+ +TP SS T T + + ETP SS + D + +P
Sbjct: 486 ----PPQVTSDTPASSSPPQVTSDTPASSSPPQVTSETP---ASSSPPQVTSDTSASISP 538
Query: 729 SGAM--TPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMTP 786
+ TP++++P +T TP + + TP+ +PT + A+ +P ++ + TP
Sbjct: 539 PQVISDTPASSSPPQVTSETPASSSPTNMTSDTPASSSPTNMTSDTPASSSPTNMTSDTP 598
>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2
Length = 589
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 1028 HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ 1087
HL + L +E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+
Sbjct: 364 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVR 420
Query: 1088 ENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146
I+ + +A + G E+ + +C + L H AIR A + + + G
Sbjct: 421 LAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATSNLKKLVEKFGKE 476
Query: 1147 DVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNV 1198
AT++ + +R+ T I +++E C + +LP ++ P NV
Sbjct: 477 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536
Query: 1199 QNGVLKALSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ V K+L + IG + + V P+LE D+D+
Sbjct: 537 RFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDV 573
>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3
Length = 589
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 1028 HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ 1087
HL + L +E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+
Sbjct: 364 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVR 420
Query: 1088 ENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146
I+ + +A + G E+ + +C + L H AIR A + + + G
Sbjct: 421 LAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATSNLKKLVEKFGKE 476
Query: 1147 DVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNV 1198
AT++ + +R+ T I +++E C + +LP ++ P NV
Sbjct: 477 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536
Query: 1199 QNGVLKALSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ V K+L + IG + + V P+LE D+D+
Sbjct: 537 RFNVAKSL----QKIGPILDNSTLQSEVKPILEKLTQDQDV 573
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 673 TPKTERETPGHS----------SGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDE 722
+P +P HS +G A +P T PG T GG S W
Sbjct: 1495 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSP 1554
Query: 723 TPQATPSGAMTPSAATPGGMTPS--TPITPHVGST-PLMTPS 761
P GA++P + GGM+P +P +P T P +P+
Sbjct: 1555 ASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1596
>sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1
PE=3 SV=1
Length = 2667
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 103/483 (21%), Positives = 194/483 (40%), Gaps = 86/483 (17%)
Query: 899 VGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNL----GAA----------DIDSRLE 944
VG S+ I +++ K + ++ M++E ++ + N GAA I S
Sbjct: 1355 VGISKCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKN 1414
Query: 945 EQLIDGILYAFQEQT--TEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKV 1002
++D + +++ T L F + N +G+ +PY+ I +L + ++V
Sbjct: 1415 YSILDTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEV 1474
Query: 1003 RQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGAL--------KA 1054
R AD I +L GH GV + VL ++L AL +
Sbjct: 1475 RDATADTAKAIM--------SQLSGH-GVKI----------VLPALLKALDDRSWRTKEG 1515
Query: 1055 IVNVIGMTKMTPP------IKDLLPRLTPILKNRHEKVQENCIDLVGRIAD--RGPEYVS 1106
+ ++G P + ++P+LT +L + H KVQE + + I R PE
Sbjct: 1516 SIELLGAMAFCAPKQLSSCLPTIVPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQI 1575
Query: 1107 AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK--VQERQNR 1164
+ ++ E+ H K + ++T Y+ I P L+ LL L+ ++ER +
Sbjct: 1576 HVPLLLQTYDDPEI---HSKELLENLLST-NYV-HTIDPAS-LSLLLPILERTLKERSSE 1629
Query: 1165 VCTTVAIAIVAETCS--------PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 1214
+ ++ IV CS P+ ++P + P V+ +AL L +G
Sbjct: 1630 L-KKMSCQIVGNLCSLTEPKDLVPYLNILMPVMKTVLLDPIPEVRAICARALGLLVRGMG 1688
Query: 1215 EMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM--ALGVYGFGCEDALTHLLNYVWP 1272
E +++ + LLE D+ V R A + + +L + F L+N +
Sbjct: 1689 E--ENFSTLIPWLLETVKSDQGAVERSGAAQGLSEVLASLDISRFN------SLINELLA 1740
Query: 1273 NIFETSPHLVQAFMDAVEGLRVALGPV------RILQYVLQGLFHPARKVRDVYWKIYNS 1326
PH+ + + ++LG + ++L VL+GL + VR+V + S
Sbjct: 1741 MTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLPQVLKGLADDSDPVREVCMRCGQS 1800
Query: 1327 LYI 1329
+ +
Sbjct: 1801 IVL 1803
>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1
Length = 589
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 1028 HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ 1087
HL + L +E PEV +I+ L + VIG+ +++ + LLP + + ++ +V+
Sbjct: 364 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---QSLLPAIVELAEDAKWRVR 420
Query: 1088 ENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146
I+ + +A + G E+ + +C + L H AIR A + + + G
Sbjct: 421 LAIIEYMPLLAGQLGVEFFDEK-LNSLC---MAWLVDHVYAIREAATSNLKKLVEKFGKE 476
Query: 1147 DVLATLLNNLKVQERQ----NRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNV 1198
AT++ + +R+ T I +++E C + +LP ++ P NV
Sbjct: 477 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 536
Query: 1199 QNGVLKALSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDL 1237
+ V K+L + IG + + V P+LE D+D+
Sbjct: 537 RFNVAKSL----QKIGPILDNSTLQSEVKPVLEKLTQDQDV 573
>sp|P71586|PBPA_MYCTU Penicillin-binding protein A OS=Mycobacterium tuberculosis GN=pbpA
PE=1 SV=1
Length = 491
Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 328 LAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YKVLQPPAGYIPIRTPARKLT 385
LA+ PE +QA W+R D PLT+ + +PPG +KV+ A T +LT
Sbjct: 186 LASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLT 244
Query: 386 ATPT-PIAGT 394
A PT P+ G+
Sbjct: 245 AAPTIPLPGS 254
Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 765 PTGNKAMAM-ATPT--PGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPG--YK 819
P+ K +A+ ++P+ P LA+ PE +QA W+R D PLT+ + +PPG +K
Sbjct: 167 PSTGKILALVSSPSYDPNLLASHNPE-VQAQAWQRLGDNPASPLTNRAISETYPPGSTFK 225
Query: 820 VL 821
V+
Sbjct: 226 VI 227
>sp|O13936|SPT5_SCHPO Transcription elongation factor spt5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spt5 PE=1 SV=1
Length = 990
Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 11/176 (6%)
Query: 569 PDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRWDETPGHPKPGAETP 628
P++ N + R T A A A S P +G TPA TP G +TP
Sbjct: 807 PNVPNWAQGAR-TPAVANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSRTPAW-NSGNKTP 864
Query: 629 GATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDETPKTERETPGHSSGWA 688
+R G+ TP A G +TP+ + + N ++TP T +
Sbjct: 865 AWNAGSRTPAWNSGNKTP-AWNVGNKTPAWNSGAKTPAWNAGNKTPSWNNGTKTPAWNAN 923
Query: 689 ETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTP---SAATPGG 741
+TP A +TP GG S + WD + P A TP +A TPGG
Sbjct: 924 QTPMV--ANGTNTSWGQTPAYGGFS---ETNWDTEDNSKPYTAPTPGAWAAPTPGG 974
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,706,390
Number of Sequences: 539616
Number of extensions: 26724463
Number of successful extensions: 85794
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 578
Number of HSP's that attempted gapping in prelim test: 80696
Number of HSP's gapped (non-prelim): 3429
length of query: 1359
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1229
effective length of database: 121,419,379
effective search space: 149224416791
effective search space used: 149224416791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)