Query psy10461
Match_columns 1359
No_of_seqs 413 out of 808
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 18:49:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0213|consensus 100.0 2E-265 5E-270 2273.9 56.1 1075 149-1359 7-1172(1172)
2 COG5181 HSH155 U2 snRNP splice 100.0 4E-193 9E-198 1647.7 36.6 930 221-1359 34-975 (975)
3 KOG0213|consensus 100.0 1.6E-47 3.4E-52 449.4 34.8 572 666-1327 182-1105(1172)
4 PF08920 SF3b1: Splicing facto 99.9 2.7E-27 5.9E-32 241.4 3.7 116 289-406 6-140 (144)
5 COG5181 HSH155 U2 snRNP splice 99.9 2.8E-23 6.1E-28 242.8 22.4 431 863-1322 136-905 (975)
6 KOG0211|consensus 99.9 2.7E-21 5.8E-26 240.3 23.8 351 886-1254 296-666 (759)
7 KOG2171|consensus 99.9 1.4E-19 3E-24 226.4 36.3 407 903-1314 159-616 (1075)
8 KOG0211|consensus 99.9 2.7E-21 5.9E-26 240.2 20.3 407 903-1346 82-510 (759)
9 PF08920 SF3b1: Splicing facto 99.8 6.5E-20 1.4E-24 187.6 4.1 85 713-831 29-114 (144)
10 KOG2023|consensus 99.8 4.4E-17 9.6E-22 193.5 27.3 419 905-1337 92-630 (885)
11 KOG2171|consensus 99.8 1.4E-16 2.9E-21 200.1 33.0 387 904-1300 80-510 (1075)
12 KOG2023|consensus 99.7 3.1E-14 6.8E-19 169.7 32.9 388 902-1299 173-737 (885)
13 KOG1241|consensus 99.6 2.9E-13 6.2E-18 164.1 31.8 392 903-1310 319-782 (859)
14 PRK13800 putative oxidoreducta 99.5 1.1E-12 2.3E-17 170.4 27.4 274 904-1249 622-896 (897)
15 PRK09687 putative lyase; Provi 99.5 2.4E-12 5.1E-17 146.7 23.2 252 905-1248 25-278 (280)
16 PRK09687 putative lyase; Provi 99.4 3.6E-11 7.9E-16 137.1 23.4 253 988-1290 25-278 (280)
17 KOG1824|consensus 99.4 3.8E-10 8.2E-15 139.3 32.2 336 895-1236 74-489 (1233)
18 PRK13800 putative oxidoreducta 99.3 1.1E-10 2.4E-15 151.9 27.0 274 947-1291 622-896 (897)
19 KOG1242|consensus 99.2 1.4E-09 3E-14 131.6 26.9 306 894-1250 125-442 (569)
20 COG5215 KAP95 Karyopherin (imp 99.2 1E-08 2.2E-13 121.8 33.0 357 901-1272 319-726 (858)
21 KOG1241|consensus 99.2 5.5E-09 1.2E-13 127.7 29.3 388 905-1300 366-817 (859)
22 PF01602 Adaptin_N: Adaptin N 99.2 5.5E-09 1.2E-13 127.4 29.2 368 903-1298 114-487 (526)
23 PLN03200 cellulose synthase-in 99.2 4.7E-09 1E-13 141.8 29.4 387 897-1294 440-860 (2102)
24 PF01602 Adaptin_N: Adaptin N 99.2 2E-08 4.4E-13 122.5 31.2 386 905-1327 9-404 (526)
25 KOG0166|consensus 99.1 6.6E-09 1.4E-13 125.2 25.2 358 905-1296 68-438 (514)
26 PLN03200 cellulose synthase-in 99.1 1.1E-08 2.3E-13 138.5 29.7 348 896-1255 397-767 (2102)
27 KOG1242|consensus 99.1 2.5E-09 5.4E-14 129.5 21.0 329 903-1246 216-558 (569)
28 KOG0166|consensus 99.0 9E-09 1.9E-13 124.1 21.0 309 894-1213 101-438 (514)
29 KOG0212|consensus 99.0 7.6E-08 1.7E-12 114.9 27.7 360 905-1271 44-425 (675)
30 KOG1240|consensus 99.0 1.1E-08 2.4E-13 129.5 21.5 268 998-1274 435-744 (1431)
31 PTZ00429 beta-adaptin; Provisi 99.0 1.3E-06 2.8E-11 111.4 36.6 361 904-1292 141-544 (746)
32 PTZ00429 beta-adaptin; Provisi 98.8 6.9E-06 1.5E-10 104.9 36.8 278 908-1213 37-328 (746)
33 KOG0915|consensus 98.8 1.7E-06 3.8E-11 112.3 30.3 300 964-1272 976-1322(1702)
34 KOG0212|consensus 98.8 3.2E-06 7E-11 101.5 30.4 395 908-1311 5-426 (675)
35 KOG1824|consensus 98.8 1.2E-05 2.5E-10 100.9 36.0 401 901-1310 125-617 (1233)
36 COG5215 KAP95 Karyopherin (imp 98.7 1.7E-05 3.6E-10 95.3 31.8 425 905-1341 265-778 (858)
37 PF10508 Proteasom_PSMB: Prote 98.7 1.5E-05 3.3E-10 98.4 31.9 305 951-1292 43-364 (503)
38 KOG0915|consensus 98.6 2.7E-05 5.8E-10 101.8 30.8 346 894-1251 947-1343(1702)
39 KOG2552|consensus 98.5 3E-08 6.4E-13 114.0 2.0 60 827-886 320-379 (388)
40 COG5064 SRP1 Karyopherin (impo 98.5 3.8E-06 8.1E-11 95.8 18.4 316 905-1257 73-403 (526)
41 PF12348 CLASP_N: CLASP N term 98.5 2.6E-06 5.6E-11 93.7 16.9 183 911-1099 15-206 (228)
42 PF10508 Proteasom_PSMB: Prote 98.5 8.6E-05 1.9E-09 91.9 30.1 363 908-1284 43-452 (503)
43 TIGR02270 conserved hypothetic 98.4 3.5E-05 7.6E-10 92.8 24.9 209 987-1251 87-295 (410)
44 PF12460 MMS19_C: RNAPII trans 98.3 0.00071 1.5E-08 81.8 32.8 338 906-1251 2-393 (415)
45 PF12348 CLASP_N: CLASP N term 98.3 3.2E-05 6.9E-10 85.1 19.1 182 1070-1251 7-205 (228)
46 COG1413 FOG: HEAT repeat [Ener 98.3 0.00021 4.5E-09 83.2 25.7 273 902-1245 42-328 (335)
47 KOG1240|consensus 98.2 0.00015 3.3E-09 93.3 25.2 267 900-1178 419-727 (1431)
48 KOG2259|consensus 98.1 0.00016 3.5E-09 88.6 21.1 213 987-1205 199-469 (823)
49 COG1413 FOG: HEAT repeat [Ener 98.1 0.00031 6.8E-09 81.7 21.2 208 986-1242 43-263 (335)
50 KOG4224|consensus 98.0 0.00038 8.3E-09 80.6 19.7 339 904-1251 86-445 (550)
51 TIGR02270 conserved hypothetic 98.0 0.00075 1.6E-08 81.5 22.7 240 902-1209 53-294 (410)
52 KOG1060|consensus 97.9 0.0041 8.9E-08 78.0 28.3 170 1068-1250 285-456 (968)
53 KOG1060|consensus 97.9 0.008 1.7E-07 75.5 30.6 282 908-1221 40-360 (968)
54 KOG2259|consensus 97.9 0.0021 4.6E-08 79.2 25.0 236 1033-1292 203-473 (823)
55 KOG1943|consensus 97.9 0.009 2E-07 77.3 31.3 259 901-1178 339-613 (1133)
56 COG5064 SRP1 Karyopherin (impo 97.8 0.00023 4.9E-09 81.8 14.3 349 902-1266 113-504 (526)
57 KOG1820|consensus 97.8 0.00078 1.7E-08 86.7 20.0 197 905-1150 255-452 (815)
58 KOG1061|consensus 97.7 0.0016 3.5E-08 81.8 20.1 391 904-1325 87-527 (734)
59 KOG1062|consensus 97.7 0.039 8.4E-07 70.0 31.7 273 903-1206 142-446 (866)
60 KOG1248|consensus 97.6 0.007 1.5E-07 79.0 23.8 236 913-1149 664-906 (1176)
61 PF12460 MMS19_C: RNAPII trans 97.6 0.021 4.6E-07 69.2 26.7 280 917-1230 111-413 (415)
62 KOG1020|consensus 97.6 0.13 2.9E-06 68.9 34.8 104 904-1015 817-921 (1692)
63 KOG4224|consensus 97.6 0.0046 1E-07 72.0 19.5 336 948-1289 87-441 (550)
64 PF05004 IFRD: Interferon-rela 97.4 0.02 4.3E-07 67.1 22.7 197 904-1101 44-259 (309)
65 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0014 3E-08 64.3 10.8 90 964-1055 5-94 (97)
66 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.001 2.2E-08 65.2 9.7 81 1164-1244 3-89 (97)
67 KOG1943|consensus 97.4 0.16 3.5E-06 66.4 31.4 225 982-1213 337-613 (1133)
68 KOG1243|consensus 97.4 0.0032 6.8E-08 78.7 16.1 263 971-1248 240-511 (690)
69 KOG1062|consensus 97.3 0.0069 1.5E-07 76.4 18.1 105 966-1080 125-229 (866)
70 PF13646 HEAT_2: HEAT repeats; 97.3 0.00082 1.8E-08 62.7 7.8 84 1150-1247 2-87 (88)
71 KOG1059|consensus 97.3 0.31 6.8E-06 61.5 31.3 289 904-1209 37-363 (877)
72 KOG1248|consensus 97.3 0.082 1.8E-06 69.5 27.6 232 963-1226 672-910 (1176)
73 cd00020 ARM Armadillo/beta-cat 97.2 0.0014 3E-08 63.5 8.5 70 1182-1251 49-119 (120)
74 COG5240 SEC21 Vesicle coat com 97.2 0.034 7.3E-07 68.0 21.3 258 983-1250 261-553 (898)
75 KOG1077|consensus 97.2 0.26 5.6E-06 62.0 28.9 295 905-1231 113-453 (938)
76 KOG1991|consensus 97.1 1 2.2E-05 58.9 34.4 400 905-1326 91-600 (1010)
77 KOG1991|consensus 97.1 0.49 1.1E-05 61.7 31.4 323 914-1274 429-778 (1010)
78 KOG2025|consensus 97.1 0.086 1.9E-06 66.2 23.6 244 906-1179 47-298 (892)
79 cd00020 ARM Armadillo/beta-cat 97.0 0.0017 3.8E-08 62.8 7.5 111 987-1098 8-119 (120)
80 PF11865 DUF3385: Domain of un 97.0 0.0034 7.5E-08 66.7 9.8 133 1108-1242 6-147 (160)
81 KOG2062|consensus 97.0 0.064 1.4E-06 67.5 21.4 275 922-1236 398-678 (929)
82 KOG2032|consensus 96.9 0.34 7.3E-06 59.2 26.6 273 969-1251 238-530 (533)
83 KOG0567|consensus 96.9 0.03 6.4E-07 63.6 16.8 193 985-1207 66-276 (289)
84 KOG4413|consensus 96.9 0.2 4.3E-06 58.3 23.3 91 917-1015 54-157 (524)
85 KOG1820|consensus 96.9 0.029 6.2E-07 72.8 18.7 191 1023-1215 248-447 (815)
86 COG5240 SEC21 Vesicle coat com 96.9 0.1 2.2E-06 64.2 21.6 275 906-1209 267-553 (898)
87 PF13646 HEAT_2: HEAT repeats; 96.9 0.0025 5.5E-08 59.4 6.8 84 1116-1207 3-88 (88)
88 PF12717 Cnd1: non-SMC mitotic 96.9 0.0079 1.7E-07 64.7 11.4 129 1196-1340 2-139 (178)
89 KOG1059|consensus 96.8 0.28 6.2E-06 61.9 25.3 233 903-1156 144-380 (877)
90 PF05918 API5: Apoptosis inhib 96.8 0.08 1.7E-06 66.2 20.3 265 903-1219 59-349 (556)
91 PF05004 IFRD: Interferon-rela 96.7 0.07 1.5E-06 62.6 18.7 178 1072-1250 45-255 (309)
92 PF05918 API5: Apoptosis inhib 96.7 0.39 8.4E-06 60.3 25.9 228 1074-1309 63-311 (556)
93 KOG2032|consensus 96.7 0.37 8.1E-06 58.8 24.2 243 1052-1302 238-504 (533)
94 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0015 3.3E-08 56.5 3.3 54 1196-1249 1-54 (55)
95 KOG0413|consensus 96.7 0.14 3E-06 65.8 21.2 137 1169-1313 950-1092(1529)
96 PF04826 Arm_2: Armadillo-like 96.5 0.035 7.6E-07 63.4 14.1 233 946-1202 12-253 (254)
97 KOG2137|consensus 96.5 0.039 8.5E-07 69.5 15.4 156 1118-1278 355-521 (700)
98 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0018 3.9E-08 56.1 2.7 51 963-1013 5-55 (55)
99 PF12717 Cnd1: non-SMC mitotic 96.5 0.026 5.6E-07 60.8 12.1 101 1041-1150 1-101 (178)
100 KOG1058|consensus 96.5 0.9 1.9E-05 57.9 26.4 349 906-1291 23-385 (948)
101 COG5096 Vesicle coat complex, 96.4 1.2 2.7E-05 57.7 28.0 140 902-1058 54-196 (757)
102 KOG4653|consensus 96.4 0.075 1.6E-06 67.9 16.9 181 1113-1298 728-922 (982)
103 KOG1020|consensus 96.3 3.9 8.5E-05 55.9 31.9 107 945-1058 815-922 (1692)
104 KOG1078|consensus 96.3 2.9 6.3E-05 53.8 29.1 129 1068-1206 243-381 (865)
105 KOG1061|consensus 96.2 0.23 5E-06 63.2 19.6 320 903-1241 160-517 (734)
106 KOG1243|consensus 96.1 0.034 7.4E-07 69.9 11.9 234 967-1213 276-517 (690)
107 PF06728 PIG-U: GPI transamida 96.1 0.0014 2.9E-08 78.8 -0.1 32 830-861 351-382 (382)
108 KOG2956|consensus 96.0 0.36 7.7E-06 58.7 18.7 193 901-1101 284-480 (516)
109 KOG0891|consensus 96.0 0.47 1E-05 67.7 22.6 357 901-1310 563-938 (2341)
110 PF05804 KAP: Kinesin-associat 95.9 0.85 1.8E-05 59.1 23.3 331 898-1251 285-648 (708)
111 KOG4653|consensus 95.9 0.4 8.7E-06 61.6 19.9 175 1076-1258 733-921 (982)
112 KOG0168|consensus 95.8 1.1 2.3E-05 57.9 22.7 156 984-1145 209-368 (1051)
113 PF02985 HEAT: HEAT repeat; I 95.7 0.014 3.1E-07 45.3 4.0 30 987-1016 1-30 (31)
114 PF14500 MMS19_N: Dos2-interac 95.6 2.5 5.4E-05 48.8 23.3 231 908-1153 4-249 (262)
115 KOG2956|consensus 95.6 0.54 1.2E-05 57.2 18.1 152 1067-1221 326-488 (516)
116 COG5218 YCG1 Chromosome conden 95.6 1.2 2.6E-05 55.4 21.0 172 942-1137 87-262 (885)
117 KOG2137|consensus 95.5 0.24 5.3E-06 62.7 15.8 208 1023-1240 307-525 (700)
118 KOG1078|consensus 95.5 7.8 0.00017 50.2 28.4 257 981-1250 240-530 (865)
119 KOG2021|consensus 95.4 7 0.00015 50.3 27.4 431 904-1343 234-793 (980)
120 PF05804 KAP: Kinesin-associat 95.4 14 0.00029 48.5 33.2 344 963-1331 267-673 (708)
121 KOG4535|consensus 95.4 10 0.00022 46.9 27.7 106 909-1015 53-179 (728)
122 PF01347 Vitellogenin_N: Lipop 95.4 0.66 1.4E-05 59.0 19.3 272 903-1206 325-617 (618)
123 smart00638 LPD_N Lipoprotein N 95.3 1.2 2.6E-05 56.3 21.5 154 1116-1289 397-573 (574)
124 KOG1949|consensus 95.3 0.62 1.3E-05 58.8 17.8 148 990-1141 178-331 (1005)
125 KOG1077|consensus 95.3 2.9 6.3E-05 53.2 23.4 249 1050-1310 130-414 (938)
126 KOG0567|consensus 95.3 2.4 5.2E-05 48.7 21.0 194 1029-1250 68-278 (289)
127 PF02985 HEAT: HEAT repeat; I 95.2 0.018 3.8E-07 44.8 3.0 31 1183-1213 1-31 (31)
128 COG5096 Vesicle coat complex, 95.2 0.28 6E-06 63.3 15.2 156 1123-1292 30-193 (757)
129 PF01347 Vitellogenin_N: Lipop 95.2 0.98 2.1E-05 57.5 20.2 222 905-1164 364-610 (618)
130 PF05536 Neurochondrin: Neuroc 95.2 13 0.00029 47.2 29.7 181 963-1147 75-267 (543)
131 KOG0414|consensus 95.2 9.9 0.00021 51.2 28.6 138 962-1101 288-430 (1251)
132 COG5116 RPN2 26S proteasome re 94.9 0.18 3.8E-06 62.0 11.6 151 1075-1235 521-674 (926)
133 KOG2022|consensus 94.7 21 0.00046 47.0 32.1 197 969-1178 448-672 (982)
134 KOG2160|consensus 94.7 1.7 3.7E-05 51.6 18.5 138 960-1099 97-240 (342)
135 KOG1949|consensus 94.7 0.23 4.9E-06 62.5 11.7 108 989-1099 223-331 (1005)
136 KOG1525|consensus 94.6 2 4.4E-05 58.6 21.3 331 911-1292 58-403 (1266)
137 PF14500 MMS19_N: Dos2-interac 94.6 3.8 8.2E-05 47.3 20.8 216 992-1215 5-241 (262)
138 KOG2025|consensus 94.4 11 0.00024 48.3 25.4 196 1037-1249 54-256 (892)
139 KOG1967|consensus 94.4 0.3 6.6E-06 63.1 12.5 133 963-1096 885-1021(1030)
140 smart00638 LPD_N Lipoprotein N 94.4 3.2 7E-05 52.5 21.8 150 985-1158 392-559 (574)
141 PF12719 Cnd3: Nuclear condens 94.1 7.2 0.00016 45.5 22.2 130 968-1102 6-146 (298)
142 PF10274 ParcG: Parkin co-regu 93.9 0.54 1.2E-05 51.4 11.6 124 1182-1307 38-179 (183)
143 COG5095 TAF6 Transcription ini 93.7 1 2.2E-05 52.1 13.7 103 905-1018 199-319 (450)
144 KOG2933|consensus 93.7 0.63 1.4E-05 54.3 12.0 140 1074-1214 92-237 (334)
145 KOG4524|consensus 93.5 8.8 0.00019 50.7 22.8 264 963-1236 566-902 (1014)
146 PF12719 Cnd3: Nuclear condens 93.5 4.4 9.5E-05 47.3 19.0 162 1068-1234 24-208 (298)
147 KOG2062|consensus 93.4 6 0.00013 50.8 20.5 101 1070-1179 554-656 (929)
148 cd00256 VATPase_H VATPase_H, r 93.4 10 0.00023 46.8 22.5 68 1182-1250 353-423 (429)
149 PF08506 Cse1: Cse1; InterPro 93.4 7.8 0.00017 47.0 21.3 191 1047-1246 115-369 (370)
150 PF13251 DUF4042: Domain of un 93.2 1.4 3.1E-05 48.2 13.4 148 919-1099 2-174 (182)
151 KOG0413|consensus 93.0 12 0.00026 49.4 22.4 200 1072-1287 474-678 (1529)
152 PF04118 Dopey_N: Dopey, N-ter 93.0 3 6.5E-05 49.2 16.5 183 905-1099 56-254 (307)
153 KOG1058|consensus 92.8 41 0.00088 43.9 27.1 91 1113-1203 318-417 (948)
154 PF11865 DUF3385: Domain of un 92.8 1.1 2.3E-05 48.0 11.5 114 902-1016 9-158 (160)
155 KOG0168|consensus 92.7 2.8 6.2E-05 54.3 16.5 141 1113-1253 212-365 (1051)
156 KOG1993|consensus 92.7 12 0.00027 48.5 21.9 192 1086-1282 503-716 (978)
157 KOG1967|consensus 92.7 2 4.3E-05 56.0 15.4 192 982-1206 811-1019(1030)
158 KOG2933|consensus 92.7 0.95 2.1E-05 52.9 11.5 152 900-1060 85-237 (334)
159 KOG0392|consensus 92.5 2.8 6E-05 56.3 16.5 162 1068-1254 75-239 (1549)
160 PF03378 CAS_CSE1: CAS/CSE pro 92.5 27 0.00059 43.3 24.6 197 945-1146 25-234 (435)
161 KOG4413|consensus 92.1 5.6 0.00012 46.9 16.6 272 1036-1314 51-361 (524)
162 KOG1993|consensus 92.0 52 0.0011 43.2 30.0 187 907-1096 530-724 (978)
163 PF10274 ParcG: Parkin co-regu 91.7 1.2 2.5E-05 48.9 10.3 95 897-992 32-130 (183)
164 PF13251 DUF4042: Domain of un 91.3 1.9 4.2E-05 47.2 11.5 61 1044-1104 2-74 (182)
165 KOG2274|consensus 91.2 65 0.0014 42.9 30.6 108 904-1017 91-206 (1005)
166 PLN03076 ARF guanine nucleotid 91.0 85 0.0018 45.4 29.2 267 913-1180 1147-1493(1780)
167 PF01603 B56: Protein phosphat 90.7 4.2 9.2E-05 49.8 15.0 237 896-1145 126-373 (409)
168 COG5218 YCG1 Chromosome conden 90.7 17 0.00037 45.9 19.6 158 1081-1249 102-263 (885)
169 PF08506 Cse1: Cse1; InterPro 90.6 8.5 0.00018 46.7 17.2 197 964-1165 115-364 (370)
170 PF12054 DUF3535: Domain of un 90.6 23 0.0005 44.0 21.3 192 1000-1214 101-345 (441)
171 COG5116 RPN2 26S proteasome re 90.0 12 0.00026 47.0 17.4 125 1070-1204 551-686 (926)
172 PF04826 Arm_2: Armadillo-like 89.9 6.5 0.00014 45.3 14.7 151 905-1062 56-210 (254)
173 KOG0392|consensus 89.7 5.1 0.00011 54.0 15.0 172 920-1099 750-925 (1549)
174 cd08050 TAF6 TATA Binding Prot 89.4 3.1 6.8E-05 49.8 12.2 122 906-1039 181-320 (343)
175 KOG0891|consensus 89.4 22 0.00047 52.0 21.7 91 946-1036 648-745 (2341)
176 KOG4524|consensus 89.3 63 0.0014 43.3 23.9 99 1118-1216 809-937 (1014)
177 KOG1822|consensus 89.2 9 0.0002 53.7 17.1 120 1119-1238 883-1016(2067)
178 PF12074 DUF3554: Domain of un 89.1 23 0.0005 42.0 19.1 70 943-1015 19-90 (339)
179 COG5098 Chromosome condensatio 88.6 6.8 0.00015 50.0 14.3 109 988-1099 301-415 (1128)
180 PF10521 DUF2454: Protein of u 88.4 39 0.00084 39.4 19.9 132 969-1100 100-254 (282)
181 KOG2011|consensus 88.3 53 0.0011 44.6 22.8 156 1005-1168 262-427 (1048)
182 KOG2759|consensus 88.0 62 0.0014 39.8 21.2 139 1070-1208 241-435 (442)
183 KOG4535|consensus 87.6 40 0.00087 41.9 19.4 91 1124-1214 496-606 (728)
184 KOG1992|consensus 87.0 1.2E+02 0.0026 40.3 26.3 198 904-1106 499-716 (960)
185 PF03224 V-ATPase_H_N: V-ATPas 86.9 58 0.0012 38.3 20.3 145 1073-1251 108-268 (312)
186 KOG2549|consensus 86.6 19 0.00041 45.3 16.4 180 906-1097 210-420 (576)
187 KOG1517|consensus 86.1 43 0.00093 45.1 19.6 226 902-1141 471-732 (1387)
188 KOG2274|consensus 86.0 43 0.00094 44.4 19.6 238 910-1157 498-760 (1005)
189 PF04118 Dopey_N: Dopey, N-ter 85.9 5.1 0.00011 47.4 10.9 107 1198-1311 71-184 (307)
190 PLN03076 ARF guanine nucleotid 85.9 2E+02 0.0044 41.8 32.6 132 964-1099 1111-1253(1780)
191 KOG1822|consensus 85.5 2E+02 0.0044 41.5 29.9 133 967-1102 854-991 (2067)
192 KOG1525|consensus 84.9 1.9E+02 0.0041 40.6 28.4 140 1068-1212 257-406 (1266)
193 cd00256 VATPase_H VATPase_H, r 84.9 96 0.0021 38.7 21.3 74 903-977 101-176 (429)
194 PF12530 DUF3730: Protein of u 84.8 77 0.0017 36.0 19.5 198 1072-1278 2-216 (234)
195 KOG1517|consensus 84.6 13 0.00028 49.6 14.2 207 985-1209 511-730 (1387)
196 KOG4500|consensus 84.3 1.2E+02 0.0026 37.8 22.2 29 904-932 88-116 (604)
197 KOG0414|consensus 83.8 35 0.00075 46.4 17.7 110 1116-1250 316-426 (1251)
198 PF10363 DUF2435: Protein of u 83.6 7.2 0.00016 38.2 9.0 47 1182-1235 43-89 (92)
199 PF08167 RIX1: rRNA processing 82.9 9.5 0.00021 40.9 10.6 84 1151-1234 29-127 (165)
200 cd08050 TAF6 TATA Binding Prot 82.2 7.4 0.00016 46.7 10.4 75 1048-1124 237-321 (343)
201 KOG1222|consensus 82.2 72 0.0016 39.9 18.1 293 900-1251 342-662 (791)
202 PF13001 Ecm29: Proteasome sta 81.4 71 0.0015 40.4 18.9 185 900-1100 234-444 (501)
203 PF08767 CRM1_C: CRM1 C termin 78.7 66 0.0014 38.3 16.6 142 918-1059 42-196 (319)
204 PF10521 DUF2454: Protein of u 78.4 21 0.00045 41.6 12.1 130 1182-1311 119-272 (282)
205 PF12830 Nipped-B_C: Sister ch 78.3 38 0.00082 37.1 13.4 130 1068-1211 6-140 (187)
206 PF14868 DUF4487: Domain of un 78.2 66 0.0014 41.3 17.1 98 1000-1101 452-554 (559)
207 PF08389 Xpo1: Exportin 1-like 77.3 25 0.00055 35.6 11.2 142 918-1094 3-148 (148)
208 KOG1789|consensus 76.2 3.1E+02 0.0067 37.7 21.8 118 894-1014 1758-1882(2235)
209 PF08064 UME: UME (NUC010) dom 76.1 18 0.00038 36.3 9.3 71 963-1035 33-103 (107)
210 KOG2081|consensus 75.8 55 0.0012 41.5 15.1 129 917-1059 366-497 (559)
211 KOG1293|consensus 75.7 2.6E+02 0.0057 36.5 24.6 94 1163-1256 393-494 (678)
212 cd03568 VHS_STAM VHS domain fa 75.6 14 0.0003 39.1 8.8 73 1179-1251 34-109 (144)
213 COG5656 SXM1 Importin, protein 75.3 2.9E+02 0.0062 36.7 30.0 320 916-1247 429-796 (970)
214 KOG1848|consensus 75.2 74 0.0016 44.2 16.8 113 1182-1294 997-1132(1610)
215 PF00790 VHS: VHS domain; Int 75.1 21 0.00046 37.2 10.0 75 1180-1254 40-120 (140)
216 KOG0946|consensus 74.4 3.1E+02 0.0067 36.7 24.3 260 902-1202 121-428 (970)
217 KOG1999|consensus 74.3 30 0.00066 46.0 12.8 14 349-362 372-385 (1024)
218 PF08167 RIX1: rRNA processing 74.1 59 0.0013 35.0 13.3 113 944-1058 23-144 (165)
219 COG5537 IRR1 Cohesin [Cell div 73.9 1.9E+02 0.004 37.4 18.7 91 1080-1174 285-384 (740)
220 KOG4199|consensus 73.9 2.2E+02 0.0047 34.6 29.1 331 894-1308 98-454 (461)
221 KOG2022|consensus 72.3 3.6E+02 0.0077 36.5 28.8 140 894-1037 493-641 (982)
222 COG5098 Chromosome condensatio 71.9 3.3E+02 0.0071 35.9 28.2 96 1154-1250 306-413 (1128)
223 PF12765 Cohesin_HEAT: HEAT re 71.7 5.5 0.00012 33.5 3.8 41 968-1010 2-42 (42)
224 PF03378 CAS_CSE1: CAS/CSE pro 70.4 2.9E+02 0.0062 34.6 23.5 185 963-1150 90-281 (435)
225 PF07571 DUF1546: Protein of u 70.3 14 0.00031 36.1 6.9 72 1081-1157 17-90 (92)
226 PF10363 DUF2435: Protein of u 70.0 30 0.00066 34.0 9.1 76 1078-1156 11-86 (92)
227 PF07571 DUF1546: Protein of u 69.8 11 0.00023 37.0 5.9 46 913-960 16-61 (92)
228 PF00514 Arm: Armadillo/beta-c 69.7 7.9 0.00017 31.7 4.3 29 986-1014 12-40 (41)
229 KOG2549|consensus 69.5 36 0.00078 43.0 11.5 159 980-1157 205-382 (576)
230 KOG2149|consensus 69.3 72 0.0016 39.1 13.7 113 904-1018 59-173 (393)
231 smart00802 UME Domain in UVSB 68.4 31 0.00068 34.9 9.0 71 963-1035 33-103 (107)
232 PF08569 Mo25: Mo25-like; Int 67.9 2E+02 0.0043 34.8 17.0 81 1071-1154 210-297 (335)
233 PF03224 V-ATPase_H_N: V-ATPas 67.5 18 0.00039 42.5 8.4 70 987-1056 106-178 (312)
234 PF00514 Arm: Armadillo/beta-c 67.0 7.7 0.00017 31.7 3.7 29 1182-1210 12-40 (41)
235 KOG1048|consensus 66.9 2.5E+02 0.0053 37.2 18.4 91 1118-1209 524-639 (717)
236 KOG1293|consensus 66.9 4E+02 0.0086 34.9 24.5 131 1119-1251 386-532 (678)
237 KOG0946|consensus 66.6 2.4E+02 0.0052 37.6 17.9 36 899-934 18-54 (970)
238 smart00802 UME Domain in UVSB 65.5 28 0.00061 35.2 8.0 66 1183-1250 12-81 (107)
239 smart00288 VHS Domain present 65.1 51 0.0011 34.3 10.1 73 1179-1251 34-110 (133)
240 COG5110 RPN1 26S proteasome re 65.0 3.3E+02 0.0072 34.9 18.0 88 1121-1208 613-702 (881)
241 PF12074 DUF3554: Domain of un 64.8 2E+02 0.0042 34.3 16.3 88 1113-1200 23-125 (339)
242 cd03561 VHS VHS domain family; 64.4 55 0.0012 33.9 10.2 77 1179-1255 34-115 (133)
243 PF13001 Ecm29: Proteasome sta 63.7 59 0.0013 41.1 12.3 119 902-1022 318-450 (501)
244 PF08064 UME: UME (NUC010) dom 62.9 33 0.00071 34.4 8.0 54 1195-1250 28-81 (107)
245 PF12231 Rif1_N: Rap1-interact 62.3 1.7E+02 0.0037 35.5 15.4 136 905-1041 177-331 (372)
246 KOG0803|consensus 61.9 6.7E+02 0.014 35.8 22.1 107 899-1010 37-148 (1312)
247 COG5656 SXM1 Importin, protein 61.3 5.3E+02 0.012 34.4 30.2 234 904-1145 500-761 (970)
248 PF08767 CRM1_C: CRM1 C termin 60.4 2.9E+02 0.0063 33.0 16.5 152 1085-1236 42-227 (319)
249 cd03569 VHS_Hrs_Vps27p VHS dom 59.4 79 0.0017 33.4 10.4 73 1179-1251 38-113 (142)
250 PF11864 DUF3384: Domain of un 59.1 4.6E+02 0.0099 33.0 24.7 159 934-1098 164-329 (464)
251 KOG2149|consensus 58.6 1.9E+02 0.004 35.7 14.4 121 982-1107 58-178 (393)
252 KOG2160|consensus 57.4 3.6E+02 0.0078 32.8 16.3 150 990-1145 42-200 (342)
253 PF06685 DUF1186: Protein of u 56.0 3.9E+02 0.0084 31.2 16.1 112 1169-1289 61-178 (249)
254 PF08389 Xpo1: Exportin 1-like 55.7 1.1E+02 0.0023 31.1 10.5 32 1127-1158 3-37 (148)
255 COG5537 IRR1 Cohesin [Cell div 55.4 3.1E+02 0.0067 35.6 15.8 128 1190-1324 322-460 (740)
256 PF12830 Nipped-B_C: Sister ch 55.2 1.5E+02 0.0032 32.6 12.0 68 1148-1215 9-78 (187)
257 cd03567 VHS_GGA VHS domain fam 53.7 72 0.0016 33.7 8.9 73 1179-1251 35-115 (139)
258 PF11935 DUF3453: Domain of un 53.0 4E+02 0.0087 30.5 15.7 63 1037-1099 2-72 (239)
259 KOG2213|consensus 52.3 1.9E+02 0.0041 35.7 12.9 123 894-1017 100-228 (460)
260 cd03572 ENTH_epsin_related ENT 51.5 64 0.0014 33.5 8.0 69 1182-1250 38-117 (122)
261 KOG2122|consensus 51.2 1E+03 0.022 34.6 24.0 311 914-1250 249-599 (2195)
262 PF11864 DUF3384: Domain of un 50.8 6E+02 0.013 31.9 30.6 289 916-1215 3-335 (464)
263 PF08623 TIP120: TATA-binding 48.7 1.7E+02 0.0036 32.2 10.9 95 963-1060 45-150 (169)
264 PF11698 V-ATPase_H_C: V-ATPas 48.6 48 0.001 34.3 6.5 69 1181-1250 42-113 (119)
265 cd03568 VHS_STAM VHS domain fa 48.3 2.3E+02 0.0051 30.0 11.8 91 1068-1158 35-130 (144)
266 PF14225 MOR2-PAG1_C: Cell mor 47.6 5.2E+02 0.011 30.2 19.4 118 1127-1250 131-252 (262)
267 PF08713 DNA_alkylation: DNA a 46.5 33 0.00072 37.5 5.5 89 1133-1230 108-196 (213)
268 KOG3961|consensus 45.4 80 0.0017 35.9 7.9 124 1182-1307 114-254 (262)
269 PF08713 DNA_alkylation: DNA a 45.4 1.3E+02 0.0028 32.9 9.8 110 1071-1190 86-197 (213)
270 PF01603 B56: Protein phosphat 44.8 7E+02 0.015 30.9 19.0 95 964-1059 109-206 (409)
271 COG5657 CSE1 CAS/CSE protein i 43.8 1.7E+02 0.0037 39.3 11.6 78 1150-1227 88-170 (947)
272 cd03561 VHS VHS domain family; 43.4 3.5E+02 0.0077 28.0 12.1 79 1068-1146 35-117 (133)
273 PF12530 DUF3730: Protein of u 43.4 5.5E+02 0.012 29.2 19.5 191 1036-1236 9-216 (234)
274 PF12243 CTK3: CTD kinase subu 42.0 84 0.0018 33.4 7.3 60 1162-1224 23-85 (139)
275 PF00790 VHS: VHS domain; Int 41.7 3.1E+02 0.0067 28.6 11.4 79 1068-1146 40-123 (140)
276 KOG2973|consensus 41.5 81 0.0018 37.6 7.6 106 905-1014 5-110 (353)
277 cd03567 VHS_GGA VHS domain fam 41.2 3.5E+02 0.0075 28.7 11.7 90 1068-1157 36-132 (139)
278 PF11698 V-ATPase_H_C: V-ATPas 41.2 85 0.0018 32.5 6.9 66 947-1013 44-113 (119)
279 PF04078 Rcd1: Cell differenti 41.2 1.9E+02 0.0042 33.8 10.5 113 1198-1310 112-234 (262)
280 PF08161 NUC173: NUC173 domain 41.1 1.8E+02 0.0039 32.6 10.1 62 1188-1249 6-67 (198)
281 PF12765 Cohesin_HEAT: HEAT re 40.0 31 0.00067 29.1 3.0 29 899-927 14-42 (42)
282 KOG0889|consensus 39.5 2E+03 0.042 34.6 23.9 202 899-1107 980-1209(3550)
283 PF14675 FANCI_S1: FANCI solen 38.9 4.7E+02 0.01 30.0 13.0 51 947-997 8-58 (223)
284 PF05536 Neurochondrin: Neuroc 38.6 9.9E+02 0.021 30.9 30.2 167 893-1062 88-266 (543)
285 PF14222 MOR2-PAG1_N: Cell mor 37.9 1E+03 0.022 30.8 28.4 82 1244-1332 453-535 (552)
286 smart00185 ARM Armadillo/beta- 37.8 41 0.00089 26.6 3.4 28 987-1014 13-40 (41)
287 PF11701 UNC45-central: Myosin 37.7 2.7E+02 0.0059 29.7 10.5 97 997-1099 16-117 (157)
288 cd03565 VHS_Tom1 VHS domain fa 37.6 1.5E+02 0.0033 31.3 8.4 73 1179-1251 35-114 (141)
289 PF08161 NUC173: NUC173 domain 37.5 6.3E+02 0.014 28.3 14.0 25 1161-1185 55-79 (198)
290 cd06561 AlkD_like A new struct 37.2 5.2E+02 0.011 27.8 12.8 74 1150-1230 108-182 (197)
291 cd07064 AlkD_like_1 A new stru 36.7 6.5E+02 0.014 28.2 15.7 125 1078-1212 54-180 (208)
292 cd03572 ENTH_epsin_related ENT 36.4 1.1E+02 0.0023 31.9 6.9 37 900-937 35-71 (122)
293 KOG2005|consensus 36.3 1.7E+02 0.0037 38.1 9.7 173 904-1116 49-225 (878)
294 PF08946 Osmo_CC: Osmosensory 35.6 20 0.00044 30.9 1.3 20 150-169 21-40 (46)
295 PF05997 Nop52: Nucleolar prot 35.4 7.1E+02 0.015 28.2 17.9 115 1077-1192 7-139 (217)
296 KOG1999|consensus 35.4 2.5E+02 0.0055 38.0 11.3 10 680-689 798-807 (1024)
297 KOG0803|consensus 35.2 1.6E+03 0.035 32.3 20.9 104 991-1095 46-149 (1312)
298 KOG2081|consensus 34.9 1.1E+03 0.024 30.5 31.0 301 925-1236 138-481 (559)
299 KOG2005|consensus 34.8 9.1E+02 0.02 32.0 15.5 71 1137-1208 630-701 (878)
300 PF12726 SEN1_N: SEN1 N termin 34.4 1.3E+03 0.027 30.9 28.8 113 947-1059 215-349 (727)
301 COG5095 TAF6 Transcription ini 33.9 3.9E+02 0.0085 32.0 11.4 32 978-1012 193-224 (450)
302 smart00185 ARM Armadillo/beta- 33.3 54 0.0012 25.9 3.4 29 1182-1210 12-40 (41)
303 PF11935 DUF3453: Domain of un 33.0 8E+02 0.017 28.1 15.8 72 912-1017 2-74 (239)
304 KOG1837|consensus 32.8 2.3E+02 0.0051 40.2 10.8 88 1163-1250 1517-1609(1621)
305 KOG2842|consensus 32.6 1.1E+03 0.023 29.5 23.6 303 934-1307 49-378 (427)
306 PF14664 RICTOR_N: Rapamycin-i 31.7 1.1E+03 0.023 29.1 21.5 212 991-1210 30-268 (371)
307 PF14868 DUF4487: Domain of un 31.6 8.2E+02 0.018 31.8 14.9 59 1085-1143 495-554 (559)
308 KOG3687|consensus 30.8 4.8E+02 0.01 35.7 12.4 90 1110-1199 426-531 (1697)
309 KOG1222|consensus 30.6 9.2E+02 0.02 30.8 14.2 31 503-533 306-336 (791)
310 cd00197 VHS_ENTH_ANTH VHS, ENT 29.7 1.9E+02 0.0042 28.8 7.4 68 1181-1249 36-112 (115)
311 KOG2199|consensus 29.2 4.6E+02 0.01 32.5 11.2 87 1068-1158 43-138 (462)
312 KOG4199|consensus 29.1 1.2E+03 0.025 28.8 21.3 49 1277-1328 342-403 (461)
313 COG2609 AceE Pyruvate dehydrog 28.5 46 0.001 43.2 3.3 126 328-490 409-536 (887)
314 KOG1851|consensus 27.3 3.4E+02 0.0073 38.8 10.8 117 896-1018 1562-1681(1710)
315 PF09324 DUF1981: Domain of un 26.7 2E+02 0.0044 27.8 6.6 66 1182-1247 17-83 (86)
316 KOG1048|consensus 26.5 6.1E+02 0.013 33.8 12.6 109 985-1097 565-682 (717)
317 PF04388 Hamartin: Hamartin pr 26.0 1E+03 0.023 31.5 14.9 149 904-1078 5-156 (668)
318 KOG4500|consensus 25.8 1.5E+03 0.032 28.9 17.1 68 1223-1290 315-386 (604)
319 KOG2213|consensus 25.7 1.4E+03 0.03 28.6 22.2 83 1130-1214 219-317 (460)
320 PF12054 DUF3535: Domain of un 25.2 1.4E+03 0.031 28.6 21.1 94 917-1015 101-208 (441)
321 PF08623 TIP120: TATA-binding 25.1 6.2E+02 0.014 27.9 10.6 70 1162-1232 42-115 (169)
322 cd05136 RasGAP_DAB2IP The DAB2 24.3 1E+03 0.022 28.6 13.2 31 1201-1234 75-106 (309)
323 KOG2199|consensus 24.1 2.5E+02 0.0053 34.7 7.9 35 1181-1215 44-78 (462)
324 PF12231 Rif1_N: Rap1-interact 24.0 1.4E+03 0.03 27.9 27.6 148 1085-1251 149-302 (372)
325 cd03569 VHS_Hrs_Vps27p VHS dom 23.8 7.2E+02 0.016 26.3 10.6 81 897-977 35-117 (142)
326 cd05134 RasGAP_RASA3 RASA3 (or 23.3 9.5E+02 0.021 29.0 12.6 29 1202-1233 79-108 (310)
327 KOG3961|consensus 22.4 1.8E+02 0.0038 33.3 5.9 90 901-992 112-205 (262)
328 KOG3929|consensus 22.4 5E+02 0.011 30.7 9.5 63 1182-1256 194-256 (363)
329 PF14668 RICTOR_V: Rapamycin-i 21.7 1.1E+02 0.0024 29.0 3.7 54 1087-1143 4-60 (73)
330 PF12397 U3snoRNP10: U3 small 21.4 4.6E+02 0.01 26.4 8.4 74 1219-1296 2-76 (121)
331 PF12783 Sec7_N: Guanine nucle 21.0 9.3E+02 0.02 25.6 11.1 100 916-1015 35-146 (168)
332 KOG1837|consensus 20.9 2.1E+03 0.045 31.6 16.2 74 1071-1145 1539-1615(1621)
333 KOG4190|consensus 20.2 1.1E+03 0.024 30.3 12.4 32 1281-1312 515-546 (1034)
No 1
>KOG0213|consensus
Probab=100.00 E-value=2.3e-265 Score=2273.92 Aligned_cols=1075 Identities=65% Similarity=0.987 Sum_probs=1020.1
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCcccccccCCCCCccccccccCCCCCcccccccCCCCchhhhhh----cccccCCCc
Q psy10461 149 ADVNIEAQIRDIQNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGGGKFEGYVKSIADDDFDYQAS----FNQNKRSGY 224 (1359)
Q Consensus 149 ~~~~i~~~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~fD~diYg~~~~~~~y~tsI~~~~dd~~~~----~~~~l~~sY 224 (1359)
++.+ |.|+|++|++|+.+. +|+||+||||+++. ++|++||+++++++.+. ...|+..+|
T Consensus 7 ~~~~-e~~~~~~~~~~~~~~---------------~~~~d~~~y~~~~~-~~y~~si~~~~~~~~d~d~~~~~~q~~~~y 69 (1172)
T KOG0213|consen 7 LRAE-ELQRRQIEAKKASLT---------------GGQFDADLYGSSDP-ESYSTSIAANEADDVDEDSTPLVGQKSTPY 69 (1172)
T ss_pred chHH-HHHHHHHHHHhhhhh---------------cCccchhhhCCCCh-hhcccccccccccccccccccccccccCcc
Confidence 4455 889999998777665 38999999999887 89999999999664332 355888999
Q ss_pred cCCHHHHHHHhhhccCCCchhhhhhhHHhhhhhHHHHHHhhhccCCCCCCccccccc-----cccChhh-----------
Q psy10461 225 TAPAALLNDIAQSEKDYDPFADRRQKTVAEKEDEYRAIRRRMIISPERVDPFAEGHL-----AAMTPEQ----------- 288 (1359)
Q Consensus 225 TaP~~l~~el~~~~e~~Dp~~~~~~k~I~~RE~dY~kRR~~R~lSP~r~DpFa~~~~-----~dvM~e~----------- 288 (1359)
++|..+++|.++..+++||+++++.++|++||++||+||++|++||+|.|||++.+. .|+|+|+
T Consensus 70 ~~p~~~l~e~a~~~e~~d~~~~~~~~~i~~re~~y~~~r~~~~~sp~r~d~f~~~~~d~rty~~~mre~~l~~e~~~~~~ 149 (1172)
T KOG0213|consen 70 TAPESLLNEVARIEEEYDPMAEKRTKTIADREDEYHKRRRDRQISPDRVDAFADKTPDGRTYTDVMREQMLEKEEREVRR 149 (1172)
T ss_pred cchHHHHHHhhhhccccChhhhccccchhhhhhHHHHHhhccccCcccccccccCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888899999999999999999999999999999999999998543 7899985
Q ss_pred -------------------------------hhhhhhccccc------------------cCCCCCCccccccC------
Q psy10461 289 -------------------------------IQAYRWEREID------------------ERNRPLTDDELEAM------ 313 (1359)
Q Consensus 289 -------------------------------~rk~~~~~~~~------------------~~~~~~~~~~~~~~------ 313 (1359)
-|++|||..++ ..+|+||||++|..
T Consensus 150 ~l~~~~k~g~~~~~~~~~~~~~~~~t~~a~~prrnrwdetp~~~t~~~~~~~~~~e~tp~~~KrrSrWDe~p~~s~~~~t 229 (1172)
T KOG0213|consen 150 ELAEKAKEGEEHSTSQPKKRLEANNTASAATPRRNRWDETPPGVTPVATRMEDKGEDTPRSTKRRSRWDETPNASRGNVT 229 (1172)
T ss_pred HHHHHhhhhhhhcccCchhccCCCccccccCccccccccCCCCCCCCCCccccccCcCccccchhhhccCCcccccccCC
Confidence 14566776552 12567889998843
Q ss_pred ---CCCCccccCCCCCCCCCCCHHHHHHhhHHHhhhccCCCCChHHhhhcCC-CCCeecCCCCCCCCCCCccccccCCCC
Q psy10461 314 ---FPPGYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFP-PGYKVLQPPAGYIPIRTPARKLTATPT 389 (1359)
Q Consensus 314 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~p~~~~~~~~~~~~~~~~~~ 389 (1359)
.+||. .||........||..++.+|||++++++||++||||||+++| +||+++.||++|.|++|| ||+++|+
T Consensus 230 ~~~~tP~~--~t~~g~~~~~~tp~~l~~~RwE~~l~~~~R~~~~eeld~~~p~~gy~~l~pp~~y~~i~tp--kl~~~~t 305 (1172)
T KOG0213|consen 230 PWEVTPGT--ATPIGRLKWDQTPTPLGYIRWEKDLWSRNRPLTDEELDALFPDSGYKVLYPPMGYREIRTP--KLMATPT 305 (1172)
T ss_pred cceecCCC--cCcccccccccCCcccceeehhhhcccccCCCchhhhhhhcCcccccccCCCcccccccch--hhhcCCc
Confidence 12211 122211233456666788999999999999999999999999 999999999999999999 9999999
Q ss_pred CCCCCCCcccccccccccccc--CCCCCCCCCCCChhhHHhHHHhccCCCCCCCCHHHHHHHHHHHHHHhccCCChHHHH
Q psy10461 390 PIAGTPTGFFIQQEDKTAKYM--DNQPKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERKIMKLLLKIKNGTPPMRK 467 (1359)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikng~~~~rk 467 (1359)
|.. ||+||+++...+.. +..|.++|+||||||.|||++++++.+++.|++||.|||+||+||||||||+|+|||
T Consensus 306 p~~----g~~~~~e~~~~k~~~~~~~g~~~l~flkpeD~~yf~~ll~d~~e~~L~~~e~kEr~i~~llLkvKNG~ppmRk 381 (1172)
T KOG0213|consen 306 PAR----GFHMPQEDRPEKYVDYDPHGYAGLPFLKPEDLQYFADLLKDFDEPLLEDEEGKERKIMRLLLKVKNGTPPMRK 381 (1172)
T ss_pred ccc----cccccccccccccccCCCCCcCCCCcCChhhHHHHHHHHhhcChhhcCcccccHHHHHHHHHhhcCCCchhHH
Confidence 984 69999998877654 455677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcchhhhhhhhhcCCChhhhhhHHHHHHHHHHHHhhcccccccchhhheeecccccccchhhhhhh
Q psy10461 468 AALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 547 (1359)
Q Consensus 468 ~~~r~~~~~~~~~g~~~~f~~~~p~~~~~~l~~~erh~~~k~~~r~~~~l~~~~~~~~~~il~~~~p~l~~~~~~~r~~~ 547 (1359)
.||||||||||+|||+||||||||+||||+||||||||||||||||||||||+||||||||||||+|||||||||+|+||
T Consensus 382 ~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~eg 461 (1172)
T KOG0213|consen 382 SALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 461 (1172)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhcCCCCCCchhHHHhhhhhHHHHHHhhcCcccchhhhhccCCCCCccccccCCCCCCCCCCC
Q psy10461 548 REIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRWDETPGHPKPGAET 627 (1359)
Q Consensus 548 r~ii~~l~~~~g~~~~~~~~r~d~~~~d~~vrn~~~r~~avv~~~~g~~~~~pfl~a~~~~~s~~~w~~~~~~~~~~~~~ 627 (1359)
|||||||+||+|||+|||+|||||||.||||||||||||||||+|||||+|||||||| |+|||||++| ||
T Consensus 462 reIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkav--c~SkkSwqaR--hT------ 531 (1172)
T KOG0213|consen 462 REIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAV--CGSKKSWQAR--HT------ 531 (1172)
T ss_pred HHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH--hccccchhhh--ch------
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999 99
Q ss_pred CCCccccccccCCCCCCCCCccCCCCCCCCCCccchhc-cccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q psy10461 628 PGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSI-RRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQET 706 (1359)
Q Consensus 628 ~g~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~-~~~rwDetp~~~~~~~~~~~~w~~tp~~~~~~~~~~~~~~~ 706 (1359)
||+++ ||||+++||+++||++++++| .+++-||+++++.
T Consensus 532 -gIkiv-----------qqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~---------------------------- 571 (1172)
T KOG0213|consen 532 -GIKIV-----------QQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRT---------------------------- 571 (1172)
T ss_pred -hhHHH-----------HHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhh----------------------------
Confidence 99999 999999999999999999999 9999999988865
Q ss_pred CCCCCCCCcccCccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccchhhhccCCCCccc-cCC
Q psy10461 707 PTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLA-AMT 785 (1359)
Q Consensus 707 ~~~~~~~~~rrSrwd~Tp~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~p~~tp~G~~~~~~~~~~~~~p~~g~~~-~m~ 785 (1359)
.+|+++|+ ++++++||||+.|++|+ .|+| .|+..|+|+.++.|++++|+++ +|+
T Consensus 572 -----------------itAlalsa-laeaa~Pygie~fDsVl-----kpLw--kgir~hrgk~laafLkAigyliplmd 626 (1172)
T KOG0213|consen 572 -----------------ITALALSA-LAEAATPYGIEQFDSVL-----KPLW--KGIRQHRGKELAAFLKAIGYLIPLMD 626 (1172)
T ss_pred -----------------HHHHHHHH-HHHhcCCcchHHHHHHH-----HHHH--HHHHHccChHHHHHHHHHhhcccccc
Confidence 88999999 99999999999999999 9999 9999999999999999999998 999
Q ss_pred HHHHHHHHHhhh-hhccCCCCChHHHHhhcCCCceecCCCccccccc-------cccccchhhhhhhccCCCCCCcccch
Q psy10461 786 PEQIQAYRWERE-IDERNRPLTDDELEAMFPPGYKVLQPPAACFFIG-------CSMFAPTVWHLWIYTRSANANFYFGV 857 (1359)
Q Consensus 786 pe~~~~~~~e~~-i~~rnf~~~DEEm~ki~p~glkVV~~p~~~~~~~-------~~lL~P~f~~lWi~~~sgNANFyyai 857 (1359)
+|++++|++|.| |..|+|.++||||+|++ ||||++ ||.+++ ..+++.||++||.++ +
T Consensus 627 ~eya~yyTrevmlil~rEf~sPDeemkkiv---LKVv~q--cc~t~Gv~~~y~r~dilp~ff~~fw~rr-m--------- 691 (1172)
T KOG0213|consen 627 AEYASYYTREVMLILIREFGSPDEEMKKIV---LKVVKQ--CCATDGVEPAYIRFDILPEFFFSFWGRR-M--------- 691 (1172)
T ss_pred HHHHHHhHHHHHHHHHHhhCCChHHHHHHH---HHHHHH--HhcccCCCHHHHhhhhhHHHHhhhhhhh-h---------
Confidence 999999999998 99999999999999999 999999 999877 667889999999988 7
Q ss_pred hhhhhhhhHHHHHhhHHHhhhhhhhhcccccccccCccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q psy10461 858 TLAFATSQIFLLTDLLFAYLKRDYTLENGIQKTIKGKPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAA 937 (1359)
Q Consensus 858 ~LV~~~lq~~k~~Dl~~A~~~~d~kl~~~Vettvk~~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe 937 (1359)
|+||+.|+.+ |++|| +||+|+|+.++|.+++..+||+++++|+|+++++++|...+|..
T Consensus 692 -----------------A~drr~ykql--v~ttv--~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 692 -----------------ALDRRNYKQL--VDTTV--EIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred -----------------hccccchhhH--HHHHH--HHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 9999999999 99999 99999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q psy10461 938 DIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM 1017 (1359)
Q Consensus 938 ~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl 1017 (1359)
+++++++++++++++++||+++.+|.+++.+||.+++.+|.+++||+++|++.++|+|+++++.||++||+++++||.+|
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy10461 1018 KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRI 1097 (1359)
Q Consensus 1018 ~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~I 1097 (1359)
+.|+++.+|.+++.+|+|+|+++||||+.+|++|+.+|++++|+..|+||++++||+|++||+|+|.+|+++||+++|.|
T Consensus 831 ktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 831 KTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred HhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhh
Q psy10461 1098 ADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAET 1177 (1359)
Q Consensus 1098 A~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea 1177 (1359)
|++|++|++.+||||||++|+++|+.|+++||++|+++||.||+++||++|+..|++||++|+++.|+|+++||+++|++
T Consensus 911 adrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~ 990 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET 990 (1172)
T ss_pred HhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCC
Q psy10461 1178 CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF 1257 (1359)
Q Consensus 1178 ~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~gl 1257 (1359)
||||+|||+|||.|+.|+.|||++|+|+|+|+|+++|+++++|+|.|+|+|+|++||+|.+|||+|+++|+||+++|+++
T Consensus 991 c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~ 1070 (1172)
T KOG0213|consen 991 CGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT 1070 (1172)
T ss_pred cCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhccccccchhhHHHHHHhhhhccccchhh
Q psy10461 1258 GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALIS 1337 (1359)
Q Consensus 1258 G~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfhpA~kvrd~~WRvyn~~y~~~~~Alv~ 1337 (1359)
||||+++||||++||||+|++|||++++++|+|+++.+||+..+++|+||||||||++||+.||++||++|+++|||||+
T Consensus 1071 g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv~ 1150 (1172)
T KOG0213|consen 1071 GCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALVA 1150 (1172)
T ss_pred CcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccccccccccccC
Q psy10461 1338 AYPRIQNDMKNVYLRYELDYVL 1359 (1359)
Q Consensus 1338 ~~P~l~~~~~~~~~~~~l~~~~ 1359 (1359)
+||...++.+|.|.|+||||+|
T Consensus 1151 ~ypv~ed~p~n~y~~~eld~~l 1172 (1172)
T KOG0213|consen 1151 CYPVEEDDPENAYYRYELDYVL 1172 (1172)
T ss_pred ccccCCCCcchhhhhhhhcccC
Confidence 9999999999999999999986
No 2
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=100.00 E-value=4e-193 Score=1647.65 Aligned_cols=930 Identities=43% Similarity=0.662 Sum_probs=873.0
Q ss_pred CCCccCCHHHHHHHhhhccCCCchhhh-hhhHHhhhhhHHHHHHhhhccCCCCCCccccccccccChhhhhhhhhccccc
Q psy10461 221 RSGYTAPAALLNDIAQSEKDYDPFADR-RQKTVAEKEDEYRAIRRRMIISPERVDPFAEGHLAAMTPEQIQAYRWEREID 299 (1359)
Q Consensus 221 ~~sYTaP~~l~~el~~~~e~~Dp~~~~-~~k~I~~RE~dY~kRR~~R~lSP~r~DpFa~~~~~dvM~e~~rk~~~~~~~~ 299 (1359)
+.+|.|++...+| ..|+.+++ ..+.|..||++||++||++...|+. + .-+|-....-|+...+
T Consensus 34 v~q~Ea~~~~~ne------skd~~qe~~~~~~iq~red~y~k~R~D~~fqpds-----d-----~k~~~~~~nt~d~~~p 97 (975)
T COG5181 34 VSQWEATPRTANE------SKDLKQEQTPLGYIQVREDLYSKTRMDPGFQPDS-----D-----KKRELELNNTWDMEYP 97 (975)
T ss_pred hhhhhcCcccccc------ccchhhhhCcccceeechhhhhhhccCCCCCCCc-----c-----hhhhhccccchhhhcc
Confidence 4567777665444 47888887 7789999999999999999988863 2 1122223355888888
Q ss_pred cCCCCCCccccccCCCCCccccCCCCCCCCCCCHHHHHHhhHHHhhhccCCCCChHHhhhcCC-CCCeecCCCCCCCCCC
Q psy10461 300 ERNRPLTDDELEAMFPPGYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFP-PGYKVLQPPAGYIPIR 378 (1359)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~p~~~~~~~ 378 (1359)
+++|++|||+. ||. |+ .|...-|| +||
T Consensus 98 ~~kR~srwd~~------gye---pp------------------------------~E~~~~l~~~~~------------- 125 (975)
T COG5181 98 DSKRSSRWDEM------GYE---PP------------------------------QEINMCLPARGY------------- 125 (975)
T ss_pred chhhhhhhhhc------cCC---Ch------------------------------hhhccccccccc-------------
Confidence 88999999977 441 10 01111223 111
Q ss_pred CccccccCCCCCCCCCCCccccccccccccccCCCCCCCCCCCChhhHHhHHHhccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy10461 379 TPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERKIMKLLLKI 458 (1359)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 458 (1359)
...++++|.+++.|||+||.+||++++++.+...|+..|.+||.+.+|||||
T Consensus 126 ----------------------------~al~~~~G~~dl~ffk~eD~kyfad~~k~~~~~~L~~~e~~Er~v~rllLkv 177 (975)
T COG5181 126 ----------------------------KALTDFHGYADLGFFKVEDLKYFADDEKDFFMPLLEDREGDERDVYRLLLKV 177 (975)
T ss_pred ----------------------------hhhhcCcccccccccchhhhhhHHhhhhhcchhhhhhcccchHhHHHHHhhc
Confidence 1236789999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHhhcCCcchhhhhhhhhcCCChhhhhhHHHHHHHHHHHHhhcccccccchhhheeecccccc
Q psy10461 459 KNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLID 538 (1359)
Q Consensus 459 kng~~~~rk~~~r~~~~~~~~~g~~~~f~~~~p~~~~~~l~~~erh~~~k~~~r~~~~l~~~~~~~~~~il~~~~p~l~~ 538 (1359)
|||+++||+.+||+|||||+.|||..+||++||+||+.+|||||||++||+|||+||+|||+++|||||||||++|||||
T Consensus 178 KNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllid 257 (975)
T COG5181 178 KNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLID 257 (975)
T ss_pred ccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHhhHHHHHHhcCCCCCCchhHHHhhhhhHHHHHHhhcCcccchhhhhccCCCCCccccccCC
Q psy10461 539 EDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRWDETP 618 (1359)
Q Consensus 539 ~~~~~r~~~r~ii~~l~~~~g~~~~~~~~r~d~~~~d~~vrn~~~r~~avv~~~~g~~~~~pfl~a~~~~~s~~~w~~~~ 618 (1359)
||+++|.+|||||+||++++||++|+++|||||+|.||||||+|+|||+|||+|||++.++|||+|+ |.|+|||++|
T Consensus 258 ed~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~--c~SrkSw~aR- 334 (975)
T COG5181 258 EDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEAL--CGSRKSWEAR- 334 (975)
T ss_pred ccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH--hcCccchhhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCCCCCCccccccccCCCCCCCCCccCCCCCCCCCCccchhc-cccccCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy10461 619 GHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSI-RRNRWDETPKTERETPGHSSGWAETPKTDRAG 697 (1359)
Q Consensus 619 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~-~~~rwDetp~~~~~~~~~~~~w~~tp~~~~~~ 697 (1359)
|| |++++ ||||++.||+.++|++.+++| ++.+-|++.+++.
T Consensus 335 -hT-------giri~-----------qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi------------------- 376 (975)
T COG5181 335 -HT-------GIRIA-----------QQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRI------------------- 376 (975)
T ss_pred -ch-------hhHHH-----------HHHHHHhCccHHhhhhhHHHHHHHHhhccceeeee-------------------
Confidence 99 99999 999999999999999999999 8888888777654
Q ss_pred CCCCCcccCCCCCCCCCcccCccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccchhhhccCC
Q psy10461 698 PGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPT 777 (1359)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~rrSrwd~Tp~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~p~~tp~G~~~~~~~~~~~~~p~ 777 (1359)
.+|.++++ ++++++||||+.|+.|+ .|+| .|+..++|+.+..|+++
T Consensus 377 --------------------------~tA~alS~-lae~~~Pygie~fd~vl-----~pLw--~g~~~hrgk~l~sfLkA 422 (975)
T COG5181 377 --------------------------DTANALSY-LAELVGPYGIEQFDEVL-----CPLW--EGASQHRGKELVSFLKA 422 (975)
T ss_pred --------------------------hhHhHHHH-HHHhcCCcchHHHHHHH-----HHHH--HHHHhcCCchHHHHHHH
Confidence 67778888 99999999999999999 9999 99999999999999999
Q ss_pred CCccc-cCCHHHHHHHHHhhh-hhccCCCCChHHHHhhcCCCceecCCCccccccc-------cccccchhhhhhhccCC
Q psy10461 778 PGHLA-AMTPEQIQAYRWERE-IDERNRPLTDDELEAMFPPGYKVLQPPAACFFIG-------CSMFAPTVWHLWIYTRS 848 (1359)
Q Consensus 778 ~g~~~-~m~pe~~~~~~~e~~-i~~rnf~~~DEEm~ki~p~glkVV~~p~~~~~~~-------~~lL~P~f~~lWi~~~s 848 (1359)
.|+++ +|+||++.+|+.|.| |.-|+|.++||||++.+ ++|+++ |-...+ ..+++.||..||.++ +
T Consensus 423 ~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~---l~v~~~--C~~v~~~tp~~lr~~v~pefF~~fw~rr-~ 496 (975)
T COG5181 423 MGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDL---LVVERI--CDKVGTDTPWKLRDQVSPEFFSPFWRRR-S 496 (975)
T ss_pred hccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhH---HHHHHH--HhccCCCCHHHHHHhhcHHhhchHHHhh-h
Confidence 99998 999999999999987 99999999999999998 888888 755443 455666999999887 7
Q ss_pred CCCCcccchhhhhhhhhHHHHHhhHHHhhhhhhhhcccccccccCccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy10461 849 ANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENGIQKTIKGKPARLVGASEIINRVVDDLKDENEQYRKMVMESIE 928 (1359)
Q Consensus 849 gNANFyyai~LV~~~lq~~k~~Dl~~A~~~~d~kl~~~Vettvk~~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~ 928 (1359)
|.||+.||.+ |+||+ .+|++.|+..++.+++..++|+.+++|+|++...+
T Consensus 497 --------------------------A~dr~~~k~v--~~ttv--ilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vs 546 (975)
T COG5181 497 --------------------------AGDRRSYKQV--VLTTV--ILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVS 546 (975)
T ss_pred --------------------------ccccccccee--ehhHH--HHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHH
Confidence 9999999998 99999 99999999999999999999999999999999999
Q ss_pred HHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHH
Q psy10461 929 KTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAAD 1008 (1359)
Q Consensus 929 ~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe 1008 (1359)
++...+|..++++++++++++.++.+||+++.++.+++.+|++++..++.+.+||+.+|++.++++|+++.+.||+.||+
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aad 626 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAAD 626 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHH
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHH
Q psy10461 1009 LISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQE 1088 (1359)
Q Consensus 1009 ~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~ 1088 (1359)
+++.|+.+++.|.+...|.+++.+|+|.|+++||||+.+|++|+.+|+++.+.+.|+||+.++||+|++||+|+|.+|..
T Consensus 627 l~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~ 706 (975)
T COG5181 627 LMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVA 706 (975)
T ss_pred HHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHH
Q psy10461 1089 NCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTT 1168 (1359)
Q Consensus 1089 AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta 1168 (1359)
+.+.++|.|+..++++++.+||||||++|+++|+.++++||++|+++||.|++++||++|+..|+++|++|+++.|+|++
T Consensus 707 nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~Rvcts 786 (975)
T COG5181 707 NTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTS 786 (975)
T ss_pred hHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHH
Q psy10461 1169 VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIK 1248 (1359)
Q Consensus 1169 ~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk 1248 (1359)
+||+++|+.||||+|||+||+.|+.|+.|||++|+|+++|||+++|+++.+|+|.|+|+|+|+++|+|.+|||+|.++|+
T Consensus 787 vaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 787 VAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhccccccchhhHHHHHHhhh
Q psy10461 1249 HMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLY 1328 (1359)
Q Consensus 1249 ~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfhpA~kvrd~~WRvyn~~y 1328 (1359)
||+++|.+.|.||+++|+||++||||+|++|||+.++.+++|+++.|||++.+++|+++|||||+++||..||++||++|
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~my 946 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMY 946 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhcccccccCcccccccccccccC
Q psy10461 1329 IGGQDALISAYPRIQNDMKNVYLRYELDYVL 1359 (1359)
Q Consensus 1329 ~~~~~Alv~~~P~l~~~~~~~~~~~~l~~~~ 1359 (1359)
+..+||||||||...++ |.|...+|+++|
T Consensus 947 v~~~damvp~ypv~~d~--n~e~~~~l~i~i 975 (975)
T COG5181 947 VFDSDAMVPCYPVEEDL--NPELARTLHICI 975 (975)
T ss_pred hcccccccccccCCCCc--CHHHHhhhhccC
Confidence 99999999999998766 667788999876
No 3
>KOG0213|consensus
Probab=100.00 E-value=1.6e-47 Score=449.35 Aligned_cols=572 Identities=27% Similarity=0.385 Sum_probs=420.0
Q ss_pred cccccCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcccCccccCCCCCCCcCCCCCCCCCCCCCCC
Q psy10461 666 RRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPS 745 (1359)
Q Consensus 666 ~~~rwDetp~~~~~~~~~~~~w~~tp~~~~~~~~~~~~~~~~~~~~~~~~rrSrwd~Tp~~~~~~~~~~~~~~p~g~~~~ 745 (1359)
|+|||||||. ++||.++| +.|...+||+ ++|||||||+||.+..+++ +|
T Consensus 182 rrnrwdetp~------------~~t~~~~~-----~~~~~e~tp~--~~KrrSrWDe~p~~s~~~~------t~------ 230 (1172)
T KOG0213|consen 182 RRNRWDETPP------------GVTPVATR-----MEDKGEDTPR--STKRRSRWDETPNASRGNV------TP------ 230 (1172)
T ss_pred cccccccCCC------------CCCCCCCc-----cccccCcCcc--ccchhhhccCCcccccccC------Cc------
Confidence 8999999983 35666665 3444444443 3899999999997643222 11
Q ss_pred CCCCCCCCCCCccCCCcccccccchhhhccCCCCccccCCHHHHHHHHHhhhhhccCCCCChHHHHhhcC-CCceecCCC
Q psy10461 746 TPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFP-PGYKVLQPP 824 (1359)
Q Consensus 746 ~~~~~~~~~~p~~tp~G~~~~~~~~~~~~~p~~g~~~~m~pe~~~~~~~e~~i~~rnf~~~DEEm~ki~p-~glkVV~~p 824 (1359)
-..||.|+||.+ +++.|.||++ .|+||||++|++||++++|||++.+|| +||+|+.+|
T Consensus 231 ----------~~~tP~~~t~~g-~~~~~~tp~~----------l~~~RwE~~l~~~~R~~~~eeld~~~p~~gy~~l~pp 289 (1172)
T KOG0213|consen 231 ----------WEVTPGTATPIG-RLKWDQTPTP----------LGYIRWEKDLWSRNRPLTDEELDALFPDSGYKVLYPP 289 (1172)
T ss_pred ----------ceecCCCcCccc-ccccccCCcc----------cceeehhhhcccccCCCchhhhhhhcCcccccccCCC
Confidence 124677788777 6888888874 579999999999999999999999999 699999999
Q ss_pred ccccccccccccchhhhhhhccCCCCCCcccch-----------hhhhhhhhHHHHHhhHHHhhhhhhhhcccccccccC
Q psy10461 825 AACFFIGCSMFAPTVWHLWIYTRSANANFYFGV-----------TLAFATSQIFLLTDLLFAYLKRDYTLENGIQKTIKG 893 (1359)
Q Consensus 825 ~~~~~~~~~lL~P~f~~lWi~~~sgNANFyyai-----------~LV~~~lq~~k~~Dl~~A~~~~d~kl~~~Vettvk~ 893 (1359)
.+|..+.. | ..+..++...+|+.-. +-.++.+.+|+++|++|+.+- +..+ -++
T Consensus 290 ~~y~~i~t----p----kl~~~~tp~~g~~~~~e~~~~k~~~~~~~g~~~l~flkpeD~~yf~~l-----l~d~---~e~ 353 (1172)
T KOG0213|consen 290 MGYREIRT----P----KLMATPTPARGFHMPQEDRPEKYVDYDPHGYAGLPFLKPEDLQYFADL-----LKDF---DEP 353 (1172)
T ss_pred cccccccc----h----hhhcCCcccccccccccccccccccCCCCCcCCCCcCChhhHHHHHHH-----Hhhc---Chh
Confidence 99887662 2 2233444444544211 123456889999999996551 1001 112
Q ss_pred ccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH---HHHHHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED---VVMLNGFG 970 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD---~v~lkaLg 970 (1359)
.|....+.+.-|.+++..+||+.++.|+.+++.|++-+.++|+. .+++.+||++++.+.|| +.+++.+.
T Consensus 354 ~L~~~e~kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~--------~lfnqiLpllMs~tLeDqerhllVkvid 425 (1172)
T KOG0213|consen 354 LLEDEEGKERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAG--------PLFNQILPLLMSPTLEDQERHLLVKVID 425 (1172)
T ss_pred hcCcccccHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccH--------HHHHHHHHHHcCccccchhhhhHHHHHH
Confidence 56677788888999999999999999999999999999999999 89999999999999887 89999999
Q ss_pred HHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh---------------------------------
Q psy10461 971 TIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM--------------------------------- 1017 (1359)
Q Consensus 971 ~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl--------------------------------- 1017 (1359)
+++..+++.++||++.|+-+|.+++.|++..+|-...++|++|+...
T Consensus 426 riLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvas 505 (1172)
T KOG0213|consen 426 RILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVAS 505 (1172)
T ss_pred HHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888700
Q ss_pred --------------------------------------------------------------------------------
Q psy10461 1018 -------------------------------------------------------------------------------- 1017 (1359)
Q Consensus 1018 -------------------------------------------------------------------------------- 1017 (1359)
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~ 585 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAAT 585 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcC
Confidence
Q ss_pred ---------------------------------------------------------------------------hhhhH
Q psy10461 1018 ---------------------------------------------------------------------------KTCQE 1022 (1359)
Q Consensus 1018 ---------------------------------------------------------------------------~~~~e 1022 (1359)
++|..
T Consensus 586 Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~ 665 (1172)
T KOG0213|consen 586 PYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCA 665 (1172)
T ss_pred CcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhc
Confidence 00000
Q ss_pred -----HhHH-HHHHHHHHH---------------------------------------HhcccCh-------H-------
Q psy10461 1023 -----EKLM-GHLGVVLYE---------------------------------------YLGEEYP-------E------- 1043 (1359)
Q Consensus 1023 -----~~lL-~~Ll~iLle---------------------------------------~L~De~p-------E------- 1043 (1359)
+..+ ..++|-++. .|+|+.+ +
T Consensus 666 t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~ 745 (1172)
T KOG0213|consen 666 TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVG 745 (1172)
T ss_pred ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHh
Confidence 0000 000000000 0111111 0
Q ss_pred ----------------------------HHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10461 1044 ----------------------------VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG 1095 (1359)
Q Consensus 1044 ----------------------------Vl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg 1095 (1359)
..+.++.+|+.+++.+|.+ +.|++.++..++...|+|+++.||+.++++++
T Consensus 746 ~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r-~kpylpqi~stiL~rLnnksa~vRqqaadlis 824 (1172)
T KOG0213|consen 746 RLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR-VKPYLPQICSTILWRLNNKSAKVRQQAADLIS 824 (1172)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc-cccchHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 0123456677778888866 55555566666666789999999999999999
Q ss_pred HHHh---hCCCc-------------hhhH--HH------------------------HHHHHHHHHHHHhhHHHHHHHHH
Q psy10461 1096 RIAD---RGPEY-------------VSAR--EW------------------------MRICFELLELLKAHKKAIRRATV 1133 (1359)
Q Consensus 1096 ~IA~---~g~e~-------------v~~k--E~------------------------mrIc~eLLelLkD~~~sVR~AAv 1133 (1359)
+||. .|.++ +.+. |+ -.++..|+|+|++.+.+|...++
T Consensus 825 ~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~I 904 (1172)
T KOG0213|consen 825 SLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCI 904 (1172)
T ss_pred HHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHH
Confidence 9987 34332 1100 00 01222346889999999999999
Q ss_pred HHHHHHHHHhCchhH--------HHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHH
Q psy10461 1134 NTFGYIAKAIGPHDV--------LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKA 1205 (1359)
Q Consensus 1134 ~tLg~IAk~~GpedV--------lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~Vlka 1205 (1359)
+.+|.||.. |++.+ .-.|++.|++.++.+|.++..+||.||+++||.+||-+|||+|+.+++ |++||++
T Consensus 905 dLvg~Iadr-gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeR--q~RvcTt 981 (1172)
T KOG0213|consen 905 DLVGTIADR-GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQER--QNRVCTT 981 (1172)
T ss_pred HHHHHHHhc-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHH--Hhchhhh
Confidence 999999997 77643 335799999999999999999999999999999999999999999999 7778887
Q ss_pred H--HHHHHHhhhhchhhHHhHHHHHHHHHhccChHHH-HHHHHHHHHHHhhhcCCCch--hHHhhhHHhhhcccccCChH
Q psy10461 1206 L--SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR-QTACATIKHMALGVYGFGCE--DALTHLLNYVWPNIFETSPH 1280 (1359)
Q Consensus 1206 L--s~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VR-qtA~saIk~LAl~~~glG~E--daliHlLnlvlPnI~Etsp~ 1280 (1359)
+ +.++|+||+ +.|+| +||+++.+.. +..+.++++|++.+...|.. |-+-..+|++-.-+.|.++-
T Consensus 982 vaIaIVaE~c~p------FtVLP----almneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~v 1051 (1172)
T KOG0213|consen 982 VAIAIVAETCGP------FTVLP----ALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLV 1051 (1172)
T ss_pred hhhhhhhhhcCc------hhhhH----HHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHH
Confidence 7 889999998 89999 5666654433 33457999999988877622 22223455566666667776
Q ss_pred HHHHHHHHHHHHHHh---hch----HHHHHhHhhhhccccccchhhHHHHHHhh
Q psy10461 1281 LVQAFMDAVEGLRVA---LGP----VRILQYVLQGLFHPARKVRDVYWKIYNSL 1327 (1359)
Q Consensus 1281 Vi~~ileaLeaLr~a---LG~----~~ll~~vLpgLfhpA~kvrd~~WRvyn~~ 1327 (1359)
.++..++.+..++.- .|. -+++|++||++|+++-||...+-.--..+
T Consensus 1052 hRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1052 HRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred HHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence 777777777665431 222 46999999999999998887766554443
No 4
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=99.93 E-value=2.7e-27 Score=241.40 Aligned_cols=116 Identities=54% Similarity=0.898 Sum_probs=36.8
Q ss_pred hhhhhhccccc------------cCCCCCCcccccc--CCCC----CccccCCCCCCCCCCCHHHHHHhhHHHhhhccCC
Q psy10461 289 IQAYRWEREID------------ERNRPLTDDELEA--MFPP----GYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNR 350 (1359)
Q Consensus 289 ~rk~~~~~~~~------------~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1359)
+||+|||..+. ..+|+||||++|. +.+| +..|.||.+++.+.|++++++.++|++||++|||
T Consensus 6 kkrsRWDetP~~~~~~~~~t~~~~~~krsRWd~TP~~~~~TP~~~~~~g~~TP~~~~~~~mtp~~~~~~~~~~eid~RNr 85 (144)
T PF08920_consen 6 KKRSRWDETPAASEPAGAATPGEPPKKRSRWDQTPAMGGATPVGNPAMGMATPMPPSSAAMTPEQYQAMRWEKEIDERNR 85 (144)
T ss_dssp -----------------------------SBT------------------------------HHHHHHHHHHHHHHHCTS
T ss_pred cccccccCCcccccccccccccCCCCCCCCcccCCCcCCCCCCCCccccccccCCCcccccChhhhhhhccccchhhccC
Confidence 47789998663 3567899999983 2444 3368899998887899999999999999999999
Q ss_pred CCChHHhhhcCC-CCCeecCCCCCCCCCCCccccccCCCCCCCCCCCcccccccccc
Q psy10461 351 PLTDDELEAMFP-PGYKVLQPPAGYIPIRTPARKLTATPTPIAGTPTGFFIQQEDKT 406 (1359)
Q Consensus 351 ~~~~~~~~~~~p-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1359)
||||||||+||| +|||||+||+||+|+|+|+|||+++|+++++ +||+||+++..
T Consensus 86 pLTDEELD~mLPseGYkIl~PP~gY~Pirtp~rkl~atptp~~~--~gf~mqe~~~~ 140 (144)
T PF08920_consen 86 PLTDEELDAMLPSEGYKILEPPAGYEPIRTPARKLMATPTPMGG--GGFMMQEEDRS 140 (144)
T ss_dssp -S-HHHHHHTS--SSEEE----TT---------------------------------
T ss_pred cCCHHHHHHhCCcCCcEEcCCCCCCccccCccccccccCccCCC--CcccccCCccc
Confidence 999999999999 9999999999999999999999999999876 79999976644
No 5
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.91 E-value=2.8e-23 Score=242.82 Aligned_cols=431 Identities=18% Similarity=0.263 Sum_probs=307.6
Q ss_pred hhhHHHHHhhHHHhhhhhhhhcccccccccCccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhh
Q psy10461 863 TSQIFLLTDLLFAYLKRDYTLENGIQKTIKGKPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSR 942 (1359)
Q Consensus 863 ~lq~~k~~Dl~~A~~~~d~kl~~~Vettvk~~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~ 942 (1359)
.+.+|+++|+.|+.|... ++..- .|....|.+.-+-+++..+||+..+.|..+++.|++-+.++|++
T Consensus 136 dl~ffk~eD~kyfad~~k------~~~~~--~L~~~e~~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~----- 202 (975)
T COG5181 136 DLGFFKVEDLKYFADDEK------DFFMP--LLEDREGDERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAA----- 202 (975)
T ss_pred cccccchhhhhhHHhhhh------hcchh--hhhhcccchHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHH-----
Confidence 456789999998776211 11112 45555677777999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCchhH---HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--
Q psy10461 943 LEEQLIDGILYAFQEQTTED---VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM-- 1017 (1359)
Q Consensus 943 L~~~Lld~LLplLqd~~~eD---~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl-- 1017 (1359)
.+++.+||.+.+.+.|| +.+++.+.+++..+++..+||++.|+-++.+++.|++.++|-...++|.+|+...
T Consensus 203 ---~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl 279 (975)
T COG5181 203 ---AVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGL 279 (975)
T ss_pred ---HHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhcc
Confidence 78999999999988877 8899999999999999999999999999999999999999999989988888700
Q ss_pred --------------------------------------------------------------------------------
Q psy10461 1018 -------------------------------------------------------------------------------- 1017 (1359)
Q Consensus 1018 -------------------------------------------------------------------------------- 1017 (1359)
T Consensus 280 ~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l 359 (975)
T COG5181 280 GFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPL 359 (975)
T ss_pred ceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhH
Confidence
Q ss_pred ----hhhhHH-----------------------------h-------------------HH-------------------
Q psy10461 1018 ----KTCQEE-----------------------------K-------------------LM------------------- 1026 (1359)
Q Consensus 1018 ----~~~~e~-----------------------------~-------------------lL------------------- 1026 (1359)
+.|.++ . +|
T Consensus 360 ~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~t 439 (975)
T COG5181 360 LKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDT 439 (975)
T ss_pred HHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhH
Confidence 000000 0 00
Q ss_pred -----------------------------------------HHHHHHHH-------------------------------
Q psy10461 1027 -----------------------------------------GHLGVVLY------------------------------- 1034 (1359)
Q Consensus 1027 -----------------------------------------~~Ll~iLl------------------------------- 1034 (1359)
..+.+.++
T Consensus 440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~ 519 (975)
T COG5181 440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD 519 (975)
T ss_pred HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC
Confidence 00000000
Q ss_pred --------HHhcccC---h----HHH---------------------HHHHHHHH--------------HHHHHhCCCCC
Q psy10461 1035 --------EYLGEEY---P----EVL---------------------GSILGALK--------------AIVNVIGMTKM 1064 (1359)
Q Consensus 1035 --------e~L~De~---p----EVl---------------------~siL~AL~--------------aIa~vlG~~~l 1064 (1359)
+.+.|+- . ..+ .++|.||. ++...++.+ +
T Consensus 520 ~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r-~ 598 (975)
T COG5181 520 PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFR-G 598 (975)
T ss_pred hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhc-c
Confidence 0000100 0 000 12222222 112222333 5
Q ss_pred CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh---hCCCchhh-------------H--H-----HH----------
Q psy10461 1065 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD---RGPEYVSA-------------R--E-----WM---------- 1111 (1359)
Q Consensus 1065 sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~---~g~e~v~~-------------k--E-----~m---------- 1111 (1359)
.|++..++.++..+|+++.+.||..+++++++|+. .|.++-.- . | +.
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 66777788888889999999999999999999876 35443110 0 0 00
Q ss_pred ---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchh--------HHHHHHHhhhcccchhHHHHHHHHHHH
Q psy10461 1112 ---------RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD--------VLATLLNNLKVQERQNRVCTTVAIAIV 1174 (1359)
Q Consensus 1112 ---------rIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gped--------Vlp~LL~~Lk~qe~~VRv~ta~AIg~L 1174 (1359)
.|...++|+|++.+.+|...++..+|.|+.. +|+. |--.|++.|++-++.+|.++..+||-|
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~-~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMN-SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 1222346889999999999999999999987 5553 333578999999999999999999999
Q ss_pred hhhcCccccHHHHHHhcCCCCchhHHHHHHHH--HHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q psy10461 1175 AETCSPFTVLPALMNEYRVPELNVQNGVLKAL--SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1175 Aea~gP~~VLPaLLnlLkDpE~nVR~~VlkaL--s~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl 1252 (1359)
++++||.+||-+|||+|+.+++ |++||+++ +.++++||+ +.|+|.|..=-......|++ .++++|++
T Consensus 758 s~aiGPqdvL~~LlnnLkvqeR--q~RvctsvaI~iVae~cgp------fsVlP~lm~dY~TPe~nVQn---GvLkam~f 826 (975)
T COG5181 758 SRAIGPQDVLDILLNNLKVQER--QQRVCTSVAISIVAEYCGP------FSVLPTLMSDYETPEANVQN---GVLKAMCF 826 (975)
T ss_pred HhhcCHHHHHHHHHhcchHHHH--HhhhhhhhhhhhhHhhcCc------hhhHHHHHhcccCchhHHHH---hHHHHHHH
Confidence 9999999999999999999999 66666665 899999998 89999544322223344544 79999999
Q ss_pred hhcCCCch--hHHhhhHHhhhcccccCChHHHHHHHHHHHHHHH-hhch------HHHHHhHhhhhccccccchhhHHH
Q psy10461 1253 GVYGFGCE--DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV-ALGP------VRILQYVLQGLFHPARKVRDVYWK 1322 (1359)
Q Consensus 1253 ~~~glG~E--daliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~-aLG~------~~ll~~vLpgLfhpA~kvrd~~WR 1322 (1359)
.+...|.. |-+-.+.|++-.-+.|.++-.++..++-|..+.. |.|. -+++|-+||+||+++-||...+-.
T Consensus 827 mFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~E 905 (975)
T COG5181 827 MFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDE 905 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHH
Confidence 88887743 2222334555556666777677666666655432 3332 458999999999999987766544
No 6
>KOG0211|consensus
Probab=99.87 E-value=2.7e-21 Score=240.31 Aligned_cols=351 Identities=19% Similarity=0.260 Sum_probs=280.9
Q ss_pred cccccccCccccccChH-----hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch
Q psy10461 886 GIQKTIKGKPARLVGAS-----EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT 960 (1359)
Q Consensus 886 ~Vettvk~~LA~klg~~-----eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~ 960 (1359)
.+++++ .+...+... ...+.++....|.+|++|+|+++....+..++|++.... .+...+.-.+.+...
T Consensus 296 a~~~~~--~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~----~~~~~~~~l~~~~~~ 369 (759)
T KOG0211|consen 296 AVESLV--SLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRT----QLVPPVSNLLKDEEW 369 (759)
T ss_pred HHHHHH--HHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcc----cchhhHHHHhcchhh
Confidence 456666 677777766 457778889999999999999999999999999952222 122222233333333
Q ss_pred hH-HHHHHHHHHHHhhccc--ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh
Q psy10461 961 ED-VVMLNGFGTIVNQLGK--RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL 1037 (1359)
Q Consensus 961 eD-~v~lkaLg~Lae~Lg~--~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L 1037 (1359)
+. ..+......++..+.. +..-..+.|+|.+..++.|.+++||.+.|..++.++++++ .+..+..+.+++...+
T Consensus 370 e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l 446 (759)
T KOG0211|consen 370 EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNL 446 (759)
T ss_pred hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhc
Confidence 33 2333344455554442 2233456789999999999999999999999999999988 5688889999999999
Q ss_pred cccChHHHHHHH---HHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCCCchhhHHHHHH
Q psy10461 1038 GEEYPEVLGSIL---GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD-RGPEYVSAREWMRI 1113 (1359)
Q Consensus 1038 ~De~pEVl~siL---~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~e~v~~kE~mrI 1113 (1359)
+|++++|+.+++ ..+..+..+.|.. ...+++||.+..+..|.+|+||.++++.++.++. .|.++++.+ +-.+
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~---~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-~~~l 522 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGIS---TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-LAEL 522 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccch---hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHH
Confidence 999999999988 5555556666655 4466999999999999999999999999999988 566788777 5556
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch----hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc----ccHH
Q psy10461 1114 CFELLELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF----TVLP 1185 (1359)
Q Consensus 1114 c~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe----dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~----~VLP 1185 (1359)
| ..||.|+..+||++|+.++..++..+|.+ ++++.++....+.++.+|.+++.++..+++++|.. .++|
T Consensus 523 ~---~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp 599 (759)
T KOG0211|consen 523 L---RTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLP 599 (759)
T ss_pred H---HhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhH
Confidence 6 68899999999999999999999999964 56667776666666779999999999999999964 8999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhh
Q psy10461 1186 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 1254 (1359)
Q Consensus 1186 aLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~ 1254 (1359)
.+.++.+|+.+|||++|+|.|..+...+.....+ ..|.|+++.+..|.+.+||..|..+...+.+..
T Consensus 600 ~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~--~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 600 VFLDLVKDPVANVRINVAKHLPKILKLLDESVRD--EEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred HHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH--HHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888753333 689999999999999999998888887776543
No 7
>KOG2171|consensus
Probab=99.87 E-value=1.4e-19 Score=226.44 Aligned_cols=407 Identities=19% Similarity=0.239 Sum_probs=293.6
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcC--ccchh--hhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLG--AADID--SRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG 977 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LG--pe~l~--~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg 977 (1359)
++...|..-+.|.|..||..|++++..++..+. ...+. ..+.|.++..+-..+++...+. ..++++|..+++..+
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p 238 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP 238 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch
Confidence 456777889999999999999999999999885 22121 1222333333333333332222 677889999999999
Q ss_pred cccccchHhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhh-hhhH-HhHHHHHHHHHHHHhccc--Ch---------
Q psy10461 978 KRVKPYLPQICGTILWRLNNK--SAKVRQQAADLISRIAVVMK-TCQE-EKLMGHLGVVLYEYLGEE--YP--------- 1042 (1359)
Q Consensus 978 ~~ikPyl~qILpiIl~LL~De--s~~VR~aAAe~Is~LA~vl~-~~~e-~~lL~~Ll~iLle~L~De--~p--------- 1042 (1359)
+.++||+.+|+.+.+...+|+ +..+|..|.++|..+++... .|.. .+++..++++++..+-|. +.
T Consensus 239 k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 239 KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 999999999999999999874 78999999999999998843 2222 457777888888765211 11
Q ss_pred -----HHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHH
Q psy10461 1043 -----EVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFEL 1117 (1359)
Q Consensus 1043 -----EVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eL 1117 (1359)
.--.....+++.++..+|.+.+-| .+++.+-.++++.+|+-|.|+.-+|+.+++-|.+.... ++.++....
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~V 394 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIV 394 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHH
Confidence 112356789999999998776645 34444444677999999999999999999966654443 467777777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhCch-------hHHHHHHHhhhcccchhHHHHH--HHHHHHhhhcC-----cc--
Q psy10461 1118 LELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTT--VAIAIVAETCS-----PF-- 1181 (1359)
Q Consensus 1118 LelLkD~~~sVR~AAv~tLg~IAk~~Gpe-------dVlp~LL~~Lk~qe~~VRv~ta--~AIg~LAea~g-----P~-- 1181 (1359)
++.|+|.+..||.+|++++|+++..|.|+ .+.+.|+..+.+.+ .+|+++. .|+-..++.|. ||
T Consensus 395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-chHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 89999999999999999999999999984 34445555554443 3477654 44444466663 44
Q ss_pred ccHH-HHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccC-hHHHHHHHHHHHHHHhhhcCCCc
Q psy10461 1182 TVLP-ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTACATIKHMALGVYGFGC 1259 (1359)
Q Consensus 1182 ~VLP-aLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D-~~VRqtA~saIk~LAl~~~glG~ 1259 (1359)
.++. .|+-++....+.||..|+++|+.++...+..+..|...+||+|...+++.+ .+.|..+..++.-+.+...-.|.
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 3333 222234567799999999999999999999999999999999999888765 55554444444443332233332
Q ss_pred h------hHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchHH--HHHhHhhhhccccc
Q psy10461 1260 E------DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLFHPAR 1314 (1359)
Q Consensus 1260 E------daliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~--ll~~vLpgLfhpA~ 1314 (1359)
+ .-+++++--..-++.+.+...+...+.+|..+|.++|.++ +++.++|.+|..|+
T Consensus 554 e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~ 616 (1075)
T KOG2171|consen 554 EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTAR 616 (1075)
T ss_pred hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhc
Confidence 2 2333444334345777777788889999999999999977 89999999998877
No 8
>KOG0211|consensus
Probab=99.87 E-value=2.7e-21 Score=240.23 Aligned_cols=407 Identities=17% Similarity=0.223 Sum_probs=323.3
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHhhcccc--
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-EDVVMLNGFGTIVNQLGKR-- 979 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD~v~lkaLg~Lae~Lg~~-- 979 (1359)
.-+..+++.+++.+...|..+...+..++..+|.+ +++..++|++.+... ++++.. .++..+|++
T Consensus 82 ~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~--------~tr~~lipf~~e~~~~~dev~~----~~a~~~~~~~~ 149 (759)
T KOG0211|consen 82 YPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVE--------RTRLELIPFLTEAEDDEDEVLL----DLAEQLGTFLP 149 (759)
T ss_pred ccHHHHhhccCchhhhhhhhhhccccchhhhcccc--------hhhhhhhhHHHHhccchhHHHH----HHHHHhcccch
Confidence 34888999999999999999999999999999998 678889999977653 234433 344444443
Q ss_pred ---cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh--cccChHHHHHHHHHHHH
Q psy10461 980 ---VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL--GEEYPEVLGSILGALKA 1054 (1359)
Q Consensus 980 ---ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L--~De~pEVl~siL~AL~a 1054 (1359)
...|.+-+++.+..++.++...||+++++.+..++..+.+. .. ...+.+++..| +||++. +.+.++.++.
T Consensus 150 ~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~---~~-~~~lv~l~~~l~~~d~~~s-r~sacglf~~ 224 (759)
T KOG0211|consen 150 DVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKE---KL-REHLVPLLKRLATGDWFQS-RLSACGLFGK 224 (759)
T ss_pred hccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChH---HH-HHHHHHHHHHccchhhhhc-chhhhhhhHH
Confidence 35789999999999999999999999999999999888742 22 23344444444 455553 3344477777
Q ss_pred HHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy10461 1055 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVN 1134 (1359)
Q Consensus 1055 Ia~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~ 1134 (1359)
.+..+... +.-.++.|....+++|..++||.++++.++.+|..-.. ....--+...+..++.|.+++||.+|++
T Consensus 225 ~~~~~~~~---~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~ 298 (759)
T KOG0211|consen 225 LYVSLPDD---AVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVE 298 (759)
T ss_pred hccCCChH---HHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHH
Confidence 76655311 11234556666689999999999999999999984432 1112223345567789999999999999
Q ss_pred HHHHHHHHhCch-----hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc----ccHHHHHHhcCCCCchhHHHHHHH
Q psy10461 1135 TFGYIAKAIGPH-----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF----TVLPALMNEYRVPELNVQNGVLKA 1205 (1359)
Q Consensus 1135 tLg~IAk~~Gpe-----dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~----~VLPaLLnlLkDpE~nVR~~Vlka 1205 (1359)
.+..+...+..+ .+.+.+++.....++.+|.+++..+..+...+||. ..++.++++++|.+.++|..+.+.
T Consensus 299 ~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 299 SLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKK 378 (759)
T ss_pred HHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcc
Confidence 999999999887 34555565555566779999999999999999884 789999999999999999999999
Q ss_pred HHHHHHHhhhh--chhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHH
Q psy10461 1206 LSFLFEYIGEM--GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQ 1283 (1359)
Q Consensus 1206 Ls~Iae~IG~~--~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~ 1283 (1359)
...++.+.... .......++|.++.+++|.+.+||...+..+..++ +.+|.+.++.|+++.++-++.+.++.|+.
T Consensus 379 ~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~---p~~~k~~ti~~llp~~~~~l~de~~~V~l 455 (759)
T KOG0211|consen 379 VQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS---PILPKERTISELLPLLIGNLKDEDPIVRL 455 (759)
T ss_pred hHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccC---ccCCcCcCccccChhhhhhcchhhHHHHH
Confidence 98888887631 11122567899999999999999987777776665 77889999999999999999999999999
Q ss_pred HHH---HHHHHHHHhhchHHHHHhHhhhhccccccchhhHHHHHHhhhhccccchhhcccccccCc
Q psy10461 1284 AFM---DAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDM 1346 (1359)
Q Consensus 1284 ~il---eaLeaLr~aLG~~~ll~~vLpgLfhpA~kvrd~~WRvyn~~y~~~~~Alv~~~P~l~~~~ 1346 (1359)
+++ ..++.+..++|...+.|.+||++.+.+. +..||++ .||++|+|.++...
T Consensus 456 nli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~---d~~wRvr--------~ail~~ip~la~q~ 510 (759)
T KOG0211|consen 456 NLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE---DLLWRVR--------LAILEYIPQLALQL 510 (759)
T ss_pred hhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc---chhHHHH--------HHHHHHHHHHHHhh
Confidence 988 7778889999999999999999999999 7799999 99999999998543
No 9
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=99.78 E-value=6.5e-20 Score=187.58 Aligned_cols=85 Identities=66% Similarity=1.070 Sum_probs=36.4
Q ss_pred CCcccCccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccccccchhhhccCCCCccccCCHHHHHHH
Q psy10461 713 SSKRRSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMTPEQIQAY 792 (1359)
Q Consensus 713 ~~~rrSrwd~Tp~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~p~~tp~G~~~~~~~~~~~~~p~~g~~~~m~pe~~~~~ 792 (1359)
+++||||||+||.. .|.||+++.+++|+||++++.+.|+|++++.+
T Consensus 29 ~~~krsRWd~TP~~----------------------------------~~~TP~~~~~~g~~TP~~~~~~~mtp~~~~~~ 74 (144)
T PF08920_consen 29 PPKKRSRWDQTPAM----------------------------------GGATPVGNPAMGMATPMPPSSAAMTPEQYQAM 74 (144)
T ss_dssp ------SBT----------------------------------------------------------------HHHHHHH
T ss_pred CCCCCCCcccCCCc----------------------------------CCCCCCCCccccccccCCCcccccChhhhhhh
Confidence 47899999999831 33344444468899999998878999999999
Q ss_pred HHhhhhhccCCCCChHHHHhhcC-CCceecCCCccccccc
Q psy10461 793 RWEREIDERNRPLTDDELEAMFP-PGYKVLQPPAACFFIG 831 (1359)
Q Consensus 793 ~~e~~i~~rnf~~~DEEm~ki~p-~glkVV~~p~~~~~~~ 831 (1359)
+|+++|++||++|+||||+.||| .|||||.+|++|.+++
T Consensus 75 ~~~~eid~RNrpLTDEELD~mLPseGYkIl~PP~gY~Pir 114 (144)
T PF08920_consen 75 RWEKEIDERNRPLTDEELDAMLPSEGYKILEPPAGYEPIR 114 (144)
T ss_dssp HHHHHHHHCTS-S-HHHHHHTS--SSEEE----TT-----
T ss_pred ccccchhhccCcCCHHHHHHhCCcCCcEEcCCCCCCcccc
Confidence 99999999999999999999999 5999999999999877
No 10
>KOG2023|consensus
Probab=99.78 E-value=4.4e-17 Score=193.51 Aligned_cols=419 Identities=18% Similarity=0.240 Sum_probs=294.6
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc---
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV--- 980 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i--- 980 (1359)
-..++..+-|.+.-+|-.+=..|++|++.-|-..|+ .++..|..+|....... +-++.++..+|+-...++
T Consensus 92 Ks~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wp-----elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~ 166 (885)
T KOG2023|consen 92 KSECLHGLGDASPLIRATVGIVITTIASTGGLQHWP-----ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD 166 (885)
T ss_pred HHHHHhhccCchHHHHhhhhheeeeeecccccccch-----hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence 344577888999999999999999999988888774 46666666665443222 445566667776554432
Q ss_pred --ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 981 --KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 981 --kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
..-++-++|-++...++.++.+|..|..|+..+..+..+.. ...+.+.+..++..-.|+.|+|+.++|.+|--+.++
T Consensus 167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred cccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 24578899999999999999999999999998876554321 244566677777777999999999999999999888
Q ss_pred hCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--CCCchhhHHHHHHHHHHH----------HHHH-h--
Q psy10461 1059 IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR--GPEYVSAREWMRICFELL----------ELLK-A-- 1123 (1359)
Q Consensus 1059 lG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~--g~e~v~~kE~mrIc~eLL----------elLk-D-- 1123 (1359)
-- +.+-|.+..++.-+...-+|.++.|-..|-+..-.+|+. |.+.+.+. +.++...|+ -+|+ +
T Consensus 246 r~-dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~-l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 246 RP-DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY-LDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred cH-HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH-HHHHHHHHHccCccccccHHHhcCccc
Confidence 53 335555556666566566788888987788888888873 33322222 233333322 1133 0
Q ss_pred -------------------------------------------hHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhh---
Q psy10461 1124 -------------------------------------------HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK--- 1157 (1359)
Q Consensus 1124 -------------------------------------------~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk--- 1157 (1359)
..+.+|++++.+|+.++..||. ++++.+++.||
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~-elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD-ELLPILLPLLKEHL 402 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH-HHHHHHHHHHHHHc
Confidence 1378999999999999999985 67777766655
Q ss_pred -cccchhHHHHHHHHHHHhhhcC----cc--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhh-chhhHHhHHHHHH
Q psy10461 1158 -VQERQNRVCTTVAIAIVAETCS----PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM-GKDYIYAVTPLLE 1229 (1359)
Q Consensus 1158 -~qe~~VRv~ta~AIg~LAea~g----P~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~-~kdYL~~VlPlLe 1229 (1359)
+++|.+|.++..|+|.|||.|- |+ .++|.|+.+|.|..+-||...||+|+..+.++-.. ...|+..|+.-|.
T Consensus 403 ~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 6677899999999999999993 33 69999999999999999999999999888888543 3357766666555
Q ss_pred HHHhccChHHHHHHHHHHHHH---------------------HhhhcCC----------C-chhHHhh------hHHhhh
Q psy10461 1230 DALMDRDLVHRQTACATIKHM---------------------ALGVYGF----------G-CEDALTH------LLNYVW 1271 (1359)
Q Consensus 1230 daL~D~D~~VRqtA~saIk~L---------------------Al~~~gl----------G-~EdaliH------lLnlvl 1271 (1359)
+-+.|.+..|+.+||+++..+ ||++++. | ++|.+.| ++.+++
T Consensus 483 ~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLm 562 (885)
T KOG2023|consen 483 RRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILM 562 (885)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhc
Confidence 567799999999999887652 4444433 1 2222222 355566
Q ss_pred ccc-------ccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhccccccchhhHHHHHHhhhhccccchhh
Q psy10461 1272 PNI-------FETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALIS 1337 (1359)
Q Consensus 1272 PnI-------~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfhpA~kvrd~~WRvyn~~y~~~~~Alv~ 1337 (1359)
|.+ .++++++. .+++|+.+++.++|.++ +.|..|..-.. ++-...-+++.+++++..+.+.
T Consensus 563 PPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF-~P~~~~Vy~Rc---~~il~~t~q~~~~~~~~~~~~~ 630 (885)
T KOG2023|consen 563 PPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGF-LPYAQPVYQRC---FRILQKTLQLLAKVQQDPTVEA 630 (885)
T ss_pred cHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccc-cccCHHHHHHH---HHHHHHHHHHHHhccCCccccC
Confidence 544 44777887 89999999999999875 34444432211 1122222566666666555443
No 11
>KOG2171|consensus
Probab=99.78 E-value=1.4e-16 Score=200.06 Aligned_cols=387 Identities=17% Similarity=0.202 Sum_probs=284.7
Q ss_pred HHHHHhh-hcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc
Q psy10461 904 IINRVVD-DLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 904 iI~~Ll~-~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik 981 (1359)
+-..|+. ..+...+.||++-.+.+..|+++..++.|++ ++..+....+++...- +.++..|..+.+-.|...+
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 4444444 4556688999999999999999999998874 5665555555554433 7888899999999999999
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh-hH----HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTC-QE----EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV 1056 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~-~e----~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa 1056 (1359)
||+..|++++...++|.+..||-.|+..++.++..+... .. ..+|++++.++-+.+.+.+.+....++.+|..++
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999999889999999999999999511 11 3567777777777777777777788888888887
Q ss_pred HHhCCCCCCCchhchHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCCCchhh--HHHHHHHHHHH----------HHHH
Q psy10461 1057 NVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGRIADRGPEYVSA--REWMRICFELL----------ELLK 1122 (1359)
Q Consensus 1057 ~vlG~~~lsp~l~~lLP~L~~LLkD--r~~rVR~AAielIg~IA~~g~e~v~~--kE~mrIc~eLL----------elLk 1122 (1359)
...+ .-+.|.+.+++.-...+++| -...+|..|++.|-.+++..+.-... .-..++...++ +|+.
T Consensus 235 e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 235 ESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred hhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 7653 22344444555555556654 45789999999999998752211100 00111222222 2222
Q ss_pred -----hh-HHHHHHHHHHHHHHHHHHhCchhHHHHHHHh----hhcccchhHHHHHHHHHHHhhhcCcc------ccHHH
Q psy10461 1123 -----AH-KKAIRRATVNTFGYIAKAIGPHDVLATLLNN----LKVQERQNRVCTTVAIAIVAETCSPF------TVLPA 1186 (1359)
Q Consensus 1123 -----D~-~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~----Lk~qe~~VRv~ta~AIg~LAea~gP~------~VLPa 1186 (1359)
+. ....-..|..++..+|-.+|++.+++.+++. +.+.+++.|-++..||+.+++.|+.. .|+|+
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 11 2346778999999999999999888876554 56888999999999999999999743 79999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHH-HHHHHHhcc-ChHHHHHHHHHHHHHHhhhcCCCchhHHh
Q psy10461 1187 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP-LLEDALMDR-DLVHRQTACATIKHMALGVYGFGCEDALT 1264 (1359)
Q Consensus 1187 LLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlP-lLedaL~D~-D~~VRqtA~saIk~LAl~~~glG~Edali 1264 (1359)
+++.|+||.|-||.++|.+++.|...+++....+.+..+| .|...++|. ...|...|++++-.++-.|.+ +.+.
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~----~~l~ 469 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK----SILE 469 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH----HHHH
Confidence 9999999999999999999999999999877777765555 665555444 345556666666655544444 5566
Q ss_pred hhHHhhhc-cc----ccCChHHHHHHHHHHHHHHHhhchHH
Q psy10461 1265 HLLNYVWP-NI----FETSPHLVQAFMDAVEGLRVALGPVR 1300 (1359)
Q Consensus 1265 HlLnlvlP-nI----~Etsp~Vi~~ileaLeaLr~aLG~~~ 1300 (1359)
.+|+.++. ++ ...++.|+..++.+|.+++.+-+..+
T Consensus 470 pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 470 PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 66666665 22 22677888999999999999988744
No 12
>KOG2023|consensus
Probab=99.68 E-value=3.1e-14 Score=169.67 Aligned_cols=388 Identities=17% Similarity=0.213 Sum_probs=257.3
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhc-cCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ-EQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLq-d~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
+-++++++.+++++++.+|..|+.+++.++-. -++.+..++- ..++. ++.+. |...++ +.++.+|.-+++...+.
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~~qal~~~iD-~Fle~-lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-QTQALYVHID-KFLEI-LFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeec-CcHHHHHHHH-HHHHH-HHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 45699999999999999999999999998873 3332222211 11222 23333 334455 78999999999999999
Q ss_pred cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH--HhHHHHHHHHHHH----------------------
Q psy10461 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE--EKLMGHLGVVLYE---------------------- 1035 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e--~~lL~~Ll~iLle---------------------- 1035 (1359)
+.||++.|+.+++.+.+|.+..|..+|++++..+|+.-- |.. ...|.+++|+|++
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 999999999999999999999999999999999997331 111 3455555555554
Q ss_pred ------------------------------------------------------------------------HhcccChH
Q psy10461 1036 ------------------------------------------------------------------------YLGEEYPE 1043 (1359)
Q Consensus 1036 ------------------------------------------------------------------------~L~De~pE 1043 (1359)
.|..+.--
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhh
Confidence 33211111
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh
Q psy10461 1044 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1123 (1359)
Q Consensus 1044 Vl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD 1123 (1359)
+.-+.+-|++++++. +++.+.|++..++|-+..++.|+.+-||.-.-+.+++.+.-....-...-..++...++..+-|
T Consensus 409 vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD 487 (885)
T KOG2023|consen 409 VREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLD 487 (885)
T ss_pred hhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhc
Confidence 223445577777765 3566778888888888889999999999999999999887322211222234466677777889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHhh----h-cccchhHHHHHHHHHHHhhhcCcc--------ccHHHHH
Q psy10461 1124 HKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNL----K-VQERQNRVCTTVAIAIVAETCSPF--------TVLPALM 1188 (1359)
Q Consensus 1124 ~~~sVR~AAv~tLg~IAk~~Gpe--dVlp~LL~~L----k-~qe~~VRv~ta~AIg~LAea~gP~--------~VLPaLL 1188 (1359)
.++.|++||+.+|..+-+..|.+ ..+.+||..| + -|.+++.+ ...|||.+|+.||.. -++|.|+
T Consensus 488 ~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI-LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi 566 (885)
T KOG2023|consen 488 SNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI-LYDAIGTLADSVGHALNKPAYIQILMPPLI 566 (885)
T ss_pred ccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh-HHHHHHHHHHHHHHhcCcHHHHHHhccHHH
Confidence 99999999999999999987774 1233344443 1 23444444 378999999999732 5677776
Q ss_pred Hh---cCCCCchhHHHHHHHHHHHHHHh----------------------------------------------------
Q psy10461 1189 NE---YRVPELNVQNGVLKALSFLFEYI---------------------------------------------------- 1213 (1359)
Q Consensus 1189 nl---LkDpE~nVR~~VlkaLs~Iae~I---------------------------------------------------- 1213 (1359)
.- |.|.+.++ +-.+.+|+.|+..+
T Consensus 567 ~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SG 645 (885)
T KOG2023|consen 567 EKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSG 645 (885)
T ss_pred HHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhH
Confidence 53 45555432 22333333333333
Q ss_pred -----hhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCC--CchhHHhhhHHhhhcccccCChHHHHH
Q psy10461 1214 -----GEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF--GCEDALTHLLNYVWPNIFETSPHLVQA 1284 (1359)
Q Consensus 1214 -----G~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~gl--G~EdaliHlLnlvlPnI~Etsp~Vi~~ 1284 (1359)
|....+.+ .-++.++-..++|+-..|||.+-+.+..|...|... ++- ..+++++..|+--+.-.+..+
T Consensus 646 LaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~---~~fl~~lg~Nl~~~~isv~nN 722 (885)
T KOG2023|consen 646 LAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL---ADFLPILGANLNPENISVCNN 722 (885)
T ss_pred HHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH---HHHHHHHhhcCChhhchHHHH
Confidence 33333322 124556666777888889998888888886544322 221 233444444443333346667
Q ss_pred HHHHHHHHHHhhchH
Q psy10461 1285 FMDAVEGLRVALGPV 1299 (1359)
Q Consensus 1285 ileaLeaLr~aLG~~ 1299 (1359)
++=+++.++..+|.+
T Consensus 723 A~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 723 AIWAIGEIALKMGLK 737 (885)
T ss_pred HHHHHHHHHHHhchh
Confidence 788889999988875
No 13
>KOG1241|consensus
Probab=99.62 E-value=2.9e-13 Score=164.08 Aligned_cols=392 Identities=16% Similarity=0.213 Sum_probs=285.4
Q ss_pred hHHHHHhhhcC-------CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccC-chhH----HHHHHHHH
Q psy10461 903 EIINRVVDDLK-------DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ-TTED----VVMLNGFG 970 (1359)
Q Consensus 903 eiI~~Ll~~LK-------Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~-~~eD----~v~lkaLg 970 (1359)
.+++.|+..|- |++|..-+.|--+|.-++...|.. ++.+.+|++.+. ..+| ++.+.+||
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---------Iv~~Vl~Fiee~i~~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---------IVPHVLPFIEENIQNPDWRNREAAVMAFG 389 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---------chhhhHHHHHHhcCCcchhhhhHHHHHHH
Confidence 56777776553 458999999999999999999887 677888888643 3344 68889999
Q ss_pred HHHhhccc-ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcccChHHHHHH
Q psy10461 971 TIVNQLGK-RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTC-QEEKLMGHLGVVLYEYLGEEYPEVLGSI 1048 (1359)
Q Consensus 971 ~Lae~Lg~-~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~-~e~~lL~~Ll~iLle~L~De~pEVl~si 1048 (1359)
.+++.... .++|++++.+|.|+.+..|++-.||+.+|+++++|++.+..+ ..+..+...+..+.+.|.| .|-|..++
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~ 468 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNV 468 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHH
Confidence 99998866 468999999999999999999999999999999999988743 3467888899999999987 68899999
Q ss_pred HHHHHHHHHHhC----CCCCCCchhchHHHHHH-Hhc--CC----CHHHHHHHHHHHHHHHhhCCCchhhHHHHHHH---
Q psy10461 1049 LGALKAIVNVIG----MTKMTPPIKDLLPRLTP-ILK--NR----HEKVQENCIDLVGRIADRGPEYVSAREWMRIC--- 1114 (1359)
Q Consensus 1049 L~AL~aIa~vlG----~~~lsp~l~~lLP~L~~-LLk--Dr----~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc--- 1114 (1359)
|+++..+++..- ...-+++..++++.|+. +++ |+ ....|-++.++|+.+...+..++..- +.++.
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~-v~~~~l~i 547 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM-VQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHH
Confidence 999999987641 11112234445555555 443 33 34799999999999999877654432 11111
Q ss_pred -HHH---HH--H--HHh--hHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHhhhccc-chhHHHHHHHHHHHhhh
Q psy10461 1115 -FEL---LE--L--LKA--HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQE-RQNRVCTTVAIAIVAET 1177 (1359)
Q Consensus 1115 -~eL---Le--l--LkD--~~~sVR~AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~qe-~~VRv~ta~AIg~LAea 1177 (1359)
..| +. . +.| ....+...-+++|+.|...++++ .++.-++..+.... .-+-..+..|++.+++.
T Consensus 548 l~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 548 LEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 111 11 2 222 24467888899999999999883 33334455555422 22566778899999999
Q ss_pred cCcc------ccHHHHHHhc-CCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc--ChHHHHHHHHHHH
Q psy10461 1178 CSPF------TVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQTACATIK 1248 (1359)
Q Consensus 1178 ~gP~------~VLPaLLnlL-kDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~--D~~VRqtA~saIk 1248 (1359)
+|+. .+.|.|..-| +-.|..|=..++.-++.++..++..+..|-..++..|...|..+ ++.|+-.-.++..
T Consensus 628 Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~Fg 707 (859)
T KOG1241|consen 628 LGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFG 707 (859)
T ss_pred HhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHH
Confidence 9863 7999999999 56778788888888899999999877788888888776666554 4566666678888
Q ss_pred HHHhhhcCCCchhHHhhhHHhhhccccc-----CC----------hHHHHHHHHHHHHHHHhhch---HHHHHhHhhhhc
Q psy10461 1249 HMALGVYGFGCEDALTHLLNYVWPNIFE-----TS----------PHLVQAFMDAVEGLRVALGP---VRILQYVLQGLF 1310 (1359)
Q Consensus 1249 ~LAl~~~glG~EdaliHlLnlvlPnI~E-----ts----------p~Vi~~ileaLeaLr~aLG~---~~ll~~vLpgLf 1310 (1359)
-||+... .-|..+|+.++|.+-. +. ..+|..++++|.++-..++. .-+++..+|.||
T Consensus 708 DIAlaIg-----~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~ 782 (859)
T KOG1241|consen 708 DIALAIG-----ADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHII 782 (859)
T ss_pred HHHHHHH-----HhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHH
Confidence 8885432 4467788888875543 11 25778899999999888883 334444455554
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.53 E-value=1.1e-12 Score=170.44 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=209.0
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
.+..|+..|+|+++.||..|++.|.++ ++. ..++.|+.+|.|...++ ..++.+++.+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~----~~~--------~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTET----TPP--------GFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhh----cch--------hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc----
Confidence 456788899999999999999999875 343 45677778887776666 5666667666543331
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
.+.+...|+++++.||..|++.|+.+.. . . ...|...|.|.+++|+..++.+|..+..
T Consensus 686 -----~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~-----~-----~~~l~~~L~D~d~~VR~~Av~aL~~~~~----- 743 (897)
T PRK13800 686 -----APALRDHLGSPDPVVRAAALDVLRALRA--G-----D-----AALFAAALGDPDHRVRIEAVRALVSVDD----- 743 (897)
T ss_pred -----hHHHHHHhcCCCHHHHHHHHHHHHhhcc--C-----C-----HHHHHHHhcCCCHHHHHHHHHHHhcccC-----
Confidence 2456677889999999999999988741 1 0 1245678899999999988787776411
Q ss_pred CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10461 1063 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1063 ~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~ 1142 (1359)
.+.+..++.|.++.||.+++..|+.+...... .+..|+.+|+|....||.+|+.+|+.+..
T Consensus 744 ---------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~---------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~- 804 (897)
T PRK13800 744 ---------VESVAGAATDENREVRIAVAKGLATLGAGGAP---------AGDAVRALTGDPDPLVRAAALAALAELGC- 804 (897)
T ss_pred ---------cHHHHHHhcCCCHHHHHHHHHHHHHhccccch---------hHHHHHHHhcCCCHHHHHHHHHHHHhcCC-
Confidence 12355678999999999999999998653221 12334678899999999999999988743
Q ss_pred hCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHH
Q psy10461 1143 IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY 1222 (1359)
Q Consensus 1143 ~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~ 1222 (1359)
++.+...|+..|++.++.||..++.+++.+. +...++.|+..|+|+.+.||..++.+|+.+ -+. .
T Consensus 805 --~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~------~ 869 (897)
T PRK13800 805 --PPDDVAAATAALRASAWQVRQGAARALAGAA----ADVAVPALVEALTDPHLDVRKAAVLALTRW---PGD------P 869 (897)
T ss_pred --cchhHHHHHHHhcCCChHHHHHHHHHHHhcc----ccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCC------H
Confidence 3345566788888888899999999998754 456789999999999999999999998764 121 3
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1223 AVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1223 ~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
...+.|..++.|.|.+||+.|..+|.+
T Consensus 870 ~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 870 AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 678888899999999999988877754
No 15
>PRK09687 putative lyase; Provisional
Probab=99.49 E-value=2.4e-12 Score=146.74 Aligned_cols=252 Identities=16% Similarity=0.154 Sum_probs=170.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccch
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYL 984 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl 984 (1359)
+..|+..|.|++..||..|+..|.. +|..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~----~~~~----------------------------------------------- 53 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQL----RGGQ----------------------------------------------- 53 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh----cCcc-----------------------------------------------
Confidence 5667777788888888888887764 3433
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH-hcccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEY-LGEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~-L~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
.+++.+..+++|+++.||..|++.|+.|...-. .....++.|... +.|..++|+.+++.+|+.+....
T Consensus 54 -~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~------~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~---- 122 (280)
T PRK09687 54 -DVFRLAIELCSSKNPIERDIGADILSQLGMAKR------CQDNVFNILNNLALEDKSACVRASAINATGHRCKKN---- 122 (280)
T ss_pred -hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc------chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----
Confidence 222333446677778888888888777653100 011233444433 46667777777777777653211
Q ss_pred CCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy10461 1064 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1064 lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
..+....+..+...+.|.+|.||.+++.+++.+.. .. ....|+..|+|..+.||..|+.+||.+ ..
T Consensus 123 -~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~----ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~ 188 (280)
T PRK09687 123 -PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EA----AIPLLINLLKDPNGDVRNWAAFALNSN--KY 188 (280)
T ss_pred -cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HH----HHHHHHHHhcCCCHHHHHHHHHHHhcC--CC
Confidence 11123455555666788899999999998876642 11 334557888888888999999999988 22
Q ss_pred CchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHh
Q psy10461 1144 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA 1223 (1359)
Q Consensus 1144 GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~ 1223 (1359)
+...+.+.|+..+...+..||..++.++|.+ +...++|.|++.|+++. ||..++.+|+.+ | . ..
T Consensus 189 ~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~~~av~~Li~~L~~~~--~~~~a~~ALg~i----g---~---~~ 252 (280)
T PRK09687 189 DNPDIREAFVAMLQDKNEEIRIEAIIGLALR----KDKRVLSVLIKELKKGT--VGDLIIEAAGEL----G---D---KT 252 (280)
T ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc----CChhHHHHHHHHHcCCc--hHHHHHHHHHhc----C---C---Hh
Confidence 4456778888888877788999988888774 34578999999999866 676676665443 2 2 36
Q ss_pred HHHHHHHHHh-ccChHHHHHHHHHHH
Q psy10461 1224 VTPLLEDALM-DRDLVHRQTACATIK 1248 (1359)
Q Consensus 1224 VlPlLedaL~-D~D~~VRqtA~saIk 1248 (1359)
.+|.|..++. +.|..|+..|..+|+
T Consensus 253 a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 7888888875 778888877776665
No 16
>PRK09687 putative lyase; Provisional
Probab=99.39 E-value=3.6e-11 Score=137.11 Aligned_cols=253 Identities=12% Similarity=0.104 Sum_probs=186.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy10461 988 CGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP 1067 (1359)
Q Consensus 988 LpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~ 1067 (1359)
+..+..++.|++..||..|+..+..+... . .+..+...+.+.++.++...+.+|+.+...- ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-------~----~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~------~~ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQ-------D----VFRLAIELCSSKNPIERDIGADILSQLGMAK------RC 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcc-------h----HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc------cc
Confidence 44566788999999999999999888631 1 3445556677889999999888888854210 01
Q ss_pred hhchHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1068 IKDLLPRLTPI-LKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1068 l~~lLP~L~~L-LkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
....+|.|..+ ++|..+.||.+++..+|.++...... ..++...+...+.|....||.+++.+||.+ +.+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~~ 158 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----NDE 158 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CCH
Confidence 24678888876 68999999999999999986533211 112333445678888899999999999866 456
Q ss_pred hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHH
Q psy10461 1147 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP 1226 (1359)
Q Consensus 1147 dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlP 1226 (1359)
..++.|+..++..++.||..++.++|.+. .+...+++.|+..|.|+...||..++.+|+.+ |. ..++|
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~------~~av~ 226 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSNK--YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR----KD------KRVLS 226 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc----CC------hhHHH
Confidence 78899999999888899999999999882 22346899999999999999999999998663 32 47888
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHH
Q psy10461 1227 LLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVE 1290 (1359)
Q Consensus 1227 lLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLe 1290 (1359)
.|.+++.|.+ +|..++.++..+ |-+.++..+++++-.+ .++.|+..++++|+
T Consensus 227 ~Li~~L~~~~--~~~~a~~ALg~i-------g~~~a~p~L~~l~~~~---~d~~v~~~a~~a~~ 278 (280)
T PRK09687 227 VLIKELKKGT--VGDLIIEAAGEL-------GDKTLLPVLDTLLYKF---DDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHcCCc--hHHHHHHHHHhc-------CCHhHHHHHHHHHhhC---CChhHHHHHHHHHh
Confidence 8888888876 665555555443 4555665555544322 57788877777664
No 17
>KOG1824|consensus
Probab=99.37 E-value=3.8e-10 Score=139.35 Aligned_cols=336 Identities=15% Similarity=0.228 Sum_probs=239.6
Q ss_pred cccccCh---HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhcc----CchhH---HH
Q psy10461 895 PARLVGA---SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQE----QTTED---VV 964 (1359)
Q Consensus 895 LA~klg~---~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd----~~~eD---~v 964 (1359)
|++|++. +.+++.|+..+-.+.++.|+.+.-.+..++.+++|. ..+.+.+.++..++|.|.+ ++... ..
T Consensus 74 lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~-~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e 152 (1233)
T KOG1824|consen 74 LVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS-SSSFLAATVCKRITPKLKQAISKQEDVSAIKCE 152 (1233)
T ss_pred HHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc-cccccccHHHHHHHHHHHHHhhhcccchhhHHH
Confidence 4566655 455888888888999999999999999999999984 3333444455555555533 22222 46
Q ss_pred HHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc-cChH
Q psy10461 965 MLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE-EYPE 1043 (1359)
Q Consensus 965 ~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D-e~pE 1043 (1359)
++..++.+...+|.++-++...|+.+++..+.-.-..||..|+-+|+.++-... ..+...++..|+..|+. ..+.
T Consensus 153 ~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~----~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 153 VLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN----RDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred HHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhccCCCCchH
Confidence 778888999999999988999999999999999999999999999999997776 34555566777777743 3345
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhCCCchhhH--HHHHHHHHHH
Q psy10461 1044 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL---KNRHEKVQENCIDLVGRIADRGPEYVSAR--EWMRICFELL 1118 (1359)
Q Consensus 1044 Vl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL---kDr~~rVR~AAielIg~IA~~g~e~v~~k--E~mrIc~eLL 1118 (1359)
..+..+.++++++...|.+ +..+...++|.+..-+ +..+...|+.+++.++.+-.+|+..+.++ ++..+|...+
T Consensus 229 ~~rt~Iq~l~~i~r~ag~r-~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yi 307 (1233)
T KOG1824|consen 229 ATRTYIQCLAAICRQAGHR-FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYI 307 (1233)
T ss_pred HHHHHHHHHHHHHHHhcch-hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHh
Confidence 5666779999999999877 4455666777777655 67788999999999999999998776654 3445554432
Q ss_pred ----------------HH------------HHh---hHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHhhhcccc
Q psy10461 1119 ----------------EL------------LKA---HKKAIRRATVNTFGYIAKAIGP------HDVLATLLNNLKVQER 1161 (1359)
Q Consensus 1119 ----------------el------------LkD---~~~sVR~AAv~tLg~IAk~~Gp------edVlp~LL~~Lk~qe~ 1161 (1359)
.+ ..| -.|.|||+|++++..+...-.. +.+-|.++..+|.+|.
T Consensus 308 sYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREE 387 (1233)
T KOG1824|consen 308 SYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREE 387 (1233)
T ss_pred ccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhh
Confidence 11 122 2679999999999876543111 3455677888999999
Q ss_pred hhHHHHHHHHHHHhhhcC----------------c-c----------ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhh
Q psy10461 1162 QNRVCTTVAIAIVAETCS----------------P-F----------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1162 ~VRv~ta~AIg~LAea~g----------------P-~----------~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG 1214 (1359)
+|+.-++.++-.+-...+ + + .++.++-+.+++..-..|.+.+.-|..+.-...
T Consensus 388 nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 388 NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP 467 (1233)
T ss_pred hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc
Confidence 999888877766533321 1 1 244555555553333244445555555555555
Q ss_pred hhchhhHHhHHHHHHHHHhccC
Q psy10461 1215 EMGKDYIYAVTPLLEDALMDRD 1236 (1359)
Q Consensus 1215 ~~~kdYL~~VlPlLedaL~D~D 1236 (1359)
....++++.++|.+...+.|.+
T Consensus 468 ~~l~~~~~slvpgI~~~l~DkS 489 (1233)
T KOG1824|consen 468 GALAQHIPSLVPGIIYSLNDKS 489 (1233)
T ss_pred chhhhcccccchhhhhhcCCcc
Confidence 5678899999999999999987
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=1.1e-10 Score=151.91 Aligned_cols=274 Identities=16% Similarity=0.166 Sum_probs=200.7
Q ss_pred HHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhH
Q psy10461 947 LIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKL 1025 (1359)
Q Consensus 947 Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~l 1025 (1359)
.++.|+..|.|....+ ..++..|+.+. -...++.|..+++|+++.||..|+..|..++.....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 4567778888776666 56665555542 155778888999999999999999999888654431
Q ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCch
Q psy10461 1026 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYV 1105 (1359)
Q Consensus 1026 L~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v 1105 (1359)
...|...|.+.+++|+..++.+|..+.. . + ...+...|+|.++.||.+++..|+.+.. .
T Consensus 686 ----~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~-------~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----~ 744 (897)
T PRK13800 686 ----APALRDHLGSPDPVVRAAALDVLRALRA----G-------D-AALFAAALGDPDHRVRIEAVRALVSVDD-----V 744 (897)
T ss_pred ----hHHHHHHhcCCCHHHHHHHHHHHHhhcc----C-------C-HHHHHHHhcCCCHHHHHHHHHHHhcccC-----c
Confidence 1345566777889999988888877531 1 1 2345668899999999999999998632 0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHH
Q psy10461 1106 SAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1185 (1359)
Q Consensus 1106 ~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLP 1185 (1359)
..++..|.|.+..||.+++.+|+.+... .....+.|+..++..+..||.+++.+++.+.. +..+.+
T Consensus 745 ---------~~l~~~l~D~~~~VR~~aa~aL~~~~~~--~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---~~~~~~ 810 (897)
T PRK13800 745 ---------ESVAGAATDENREVRIAVAKGLATLGAG--GAPAGDAVRALTGDPDPLVRAAALAALAELGC---PPDDVA 810 (897)
T ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHHhccc--cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC---cchhHH
Confidence 1235678999999999999999998653 11235667777788888899998888887643 344667
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhh
Q psy10461 1186 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH 1265 (1359)
Q Consensus 1186 aLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliH 1265 (1359)
.++..|+|+++.||..++++|+.+ +. ...++.|..+|.|++..||..|+.+|..+. |...+..
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l----~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~------~~~~a~~- 873 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA----AA------DVAVPALVEALTDPHLDVRKAAVLALTRWP------GDPAARD- 873 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc----cc------cchHHHHHHHhcCCCHHHHHHHHHHHhccC------CCHHHHH-
Confidence 799999999999999999998654 32 255677788999999999998777776541 2333332
Q ss_pred hHHhhhcccccCChHHHHHHHHHHHH
Q psy10461 1266 LLNYVWPNIFETSPHLVQAFMDAVEG 1291 (1359)
Q Consensus 1266 lLnlvlPnI~Etsp~Vi~~ileaLea 1291 (1359)
.+..-+.|.+++|+..+..+|+.
T Consensus 874 ---~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 874 ---ALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ---HHHHHHhCCCHHHHHHHHHHHhh
Confidence 24455567899999888887753
No 19
>KOG1242|consensus
Probab=99.25 E-value=1.4e-09 Score=131.64 Aligned_cols=306 Identities=19% Similarity=0.251 Sum_probs=229.3
Q ss_pred ccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGT 971 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~ 971 (1359)
...+....+.+...+...+.-.+-.-|..|+..+..+...+|-+...+. .+++.+--+.++....- +..+-+|-.
T Consensus 125 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~---~~l~~l~~ai~dk~~~~~re~~~~a~~~ 201 (569)
T KOG1242|consen 125 VLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF---GFLDNLSKAIIDKKSALNREAALLAFEA 201 (569)
T ss_pred HHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh---hHHHHHHHHhcccchhhcHHHHHHHHHH
Confidence 3444555566777788888888889999999999999888777644333 56666666666654422 467778889
Q ss_pred HHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy10461 972 IVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA 1051 (1359)
Q Consensus 972 Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~A 1051 (1359)
.+..||....||+-+++|.|+.-..|..+.||++|.+.+-.+-..+...
T Consensus 202 ~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~------------------------------- 250 (569)
T KOG1242|consen 202 AQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY------------------------------- 250 (569)
T ss_pred HHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-------------------------------
Confidence 9999999899999999999999999999999999887765554333210
Q ss_pred HHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10461 1052 LKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRA 1131 (1359)
Q Consensus 1052 L~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~A 1131 (1359)
.++.++|.++.-+.+..|+-..++++++|.++...+.-+... ...+...+.+.|.|.+..||++
T Consensus 251 ---------------aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT~~evr~a 314 (569)
T KOG1242|consen 251 ---------------AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDTKPEVRKA 314 (569)
T ss_pred ---------------hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccCCHHHHHH
Confidence 134566666664444589999999999998888554322222 3446666778899999999999
Q ss_pred HHHHHHHHHHHhCchh---HHHHHHHhhhcccchhHHHHHHHHHH---HhhhcCcc--ccHHHHHHhcCCCCchhHHHHH
Q psy10461 1132 TVNTFGYIAKAIGPHD---VLATLLNNLKVQERQNRVCTTVAIAI---VAETCSPF--TVLPALMNEYRVPELNVQNGVL 1203 (1359)
Q Consensus 1132 Av~tLg~IAk~~Gped---Vlp~LL~~Lk~qe~~VRv~ta~AIg~---LAea~gP~--~VLPaLLnlLkDpE~nVR~~Vl 1203 (1359)
+..++-.++..+...+ ++|.|++.+.....++..| ...++. |+.+-.|. -++|.|-+-|++.+.+.+...+
T Consensus 315 ~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 315 GIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTA 393 (569)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHH-HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHH
Confidence 9999999999987654 4667788887766555555 223321 22333343 6899999999999999999999
Q ss_pred HHHHHHHHHh-hh-hchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1204 KALSFLFEYI-GE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1204 kaLs~Iae~I-G~-~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
..+..++..+ ++ ...+|+..++|-|+..+.|..+.+|..++.++..+
T Consensus 394 ~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 394 IIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred HHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 9999999998 33 57789999999999999999999998888777655
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.25 E-value=1e-08 Score=121.82 Aligned_cols=357 Identities=12% Similarity=0.109 Sum_probs=241.3
Q ss_pred hHhHHHHHhhhcC-------CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhh-ccCchhH----HHHHHH
Q psy10461 901 ASEIINRVVDDLK-------DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF-QEQTTED----VVMLNG 968 (1359)
Q Consensus 901 ~~eiI~~Ll~~LK-------Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplL-qd~~~eD----~v~lka 968 (1359)
..++++.|+..|. +++|.+-..|..+|.-++...|.. +++-.+-+. |+-..++ ++++++
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---------i~~pVl~FvEqni~~~~w~nreaavmA 389 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---------IMRPVLGFVEQNIRSESWANREAAVMA 389 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---------hHHHHHHHHHHhccCchhhhHHHHHHH
Confidence 3456777776554 568999999999999999988876 333334333 2222333 688899
Q ss_pred HHHHHhhcccc-cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH-HhHHHHHHHHHHHHhcccChHHHH
Q psy10461 969 FGTIVNQLGKR-VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE-EKLMGHLGVVLYEYLGEEYPEVLG 1046 (1359)
Q Consensus 969 Lg~Lae~Lg~~-ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e-~~lL~~Ll~iLle~L~De~pEVl~ 1046 (1359)
||.++++..+. ..+|++|.+|.|+....|..-.|+..+|++++.||..+..... ...+......++..|.| .|-+..
T Consensus 390 fGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ 468 (858)
T COG5215 390 FGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSI 468 (858)
T ss_pred hhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHh
Confidence 99999988775 4599999999999999999999999999999999987653221 22333333334444444 777888
Q ss_pred HHHHHHHHHHHHhCC--CCCCCchhchHHHHHH-Hh-----cCCCHHHHHHHHHHHHHHHhhCCCchhhHH------HHH
Q psy10461 1047 SILGALKAIVNVIGM--TKMTPPIKDLLPRLTP-IL-----KNRHEKVQENCIDLVGRIADRGPEYVSARE------WMR 1112 (1359)
Q Consensus 1047 siL~AL~aIa~vlG~--~~lsp~l~~lLP~L~~-LL-----kDr~~rVR~AAielIg~IA~~g~e~v~~kE------~mr 1112 (1359)
+|.+.+..++..+-. +....++...++.|+. ++ .+.....|-+...++|.+...|++.+.+.- .+.
T Consensus 469 ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~ 548 (858)
T COG5215 469 NCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSK 548 (858)
T ss_pred hhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 888888777766532 1223345666677766 22 244456788999999999988876554421 011
Q ss_pred ---HHHHHHH-HH--Hhh--HHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHh----hhcccch-hHHHHHHHHHHHhhh
Q psy10461 1113 ---ICFELLE-LL--KAH--KKAIRRATVNTFGYIAKAIGP--HDVLATLLNN----LKVQERQ-NRVCTTVAIAIVAET 1177 (1359)
Q Consensus 1113 ---Ic~eLLe-lL--kD~--~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~----Lk~qe~~-VRv~ta~AIg~LAea 1177 (1359)
-|...+. .| .|. ...+...-+..|..|...+++ +++-..|++. |...+.. +---+..||+.++..
T Consensus 549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence 1211111 12 232 445666667777777777787 4555555444 3333221 233456777877776
Q ss_pred cCc----c--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc--ChHHHHHHHHHHHH
Q psy10461 1178 CSP----F--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQTACATIKH 1249 (1359)
Q Consensus 1178 ~gP----~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~--D~~VRqtA~saIk~ 1249 (1359)
++. + +++|.|.+-|+-.++-|-+.++.-++.++..+|..+..|-..++..|...+..+ +++++-+..++...
T Consensus 629 l~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgD 708 (858)
T COG5215 629 LEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGD 708 (858)
T ss_pred HHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHH
Confidence 653 2 799999999999999899999999999999999877777777777666666544 45666667788888
Q ss_pred HHhhhcCCCchhHHhhhHHhhhc
Q psy10461 1250 MALGVYGFGCEDALTHLLNYVWP 1272 (1359)
Q Consensus 1250 LAl~~~glG~EdaliHlLnlvlP 1272 (1359)
||+... ..|..+|+.++-
T Consensus 709 IAlaig-----a~F~~YL~~im~ 726 (858)
T COG5215 709 IALAIG-----ANFESYLDMIMM 726 (858)
T ss_pred HHHHHh-----hhHHHHHHHHHH
Confidence 885422 456677777773
No 21
>KOG1241|consensus
Probab=99.21 E-value=5.5e-09 Score=127.74 Aligned_cols=388 Identities=15% Similarity=0.164 Sum_probs=235.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccc-hhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc--
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAAD-IDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV-- 980 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~-l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i-- 980 (1359)
++.+-..+++++|+.|..|+-++..|.. ||+. -...++...+..++.++.|+..-+ ....-.||++++.+....
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~--gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILE--GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhc--CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhccc
Confidence 3434457889999999999999998876 4431 122344455666666666665533 344456899999888754
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHH----hHHHHHHHHHHHHh-c-----ccC-hHHHHHHH
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEE----KLMGHLGVVLYEYL-G-----EEY-PEVLGSIL 1049 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~----~lL~~Ll~iLle~L-~-----De~-pEVl~siL 1049 (1359)
..|+..+++.+..-++| .|.|-..+++.+.+|++..-..... +.....+..++..| + |-. ..-+.+..
T Consensus 444 ~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAY 522 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAY 522 (859)
T ss_pred HhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHH
Confidence 47888899998888886 7889999999999999765422111 12223333333333 1 111 12333455
Q ss_pred HHHHHHHHHhCCCCCCCchhchHHHHHH---------Hh--cCCC--HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHH
Q psy10461 1050 GALKAIVNVIGMTKMTPPIKDLLPRLTP---------IL--KNRH--EKVQENCIDLVGRIADRGPEYVSAREWMRICFE 1116 (1359)
Q Consensus 1050 ~AL~aIa~vlG~~~lsp~l~~lLP~L~~---------LL--kDr~--~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~e 1116 (1359)
+||..++...- +...+....+++.+.. ++ .|++ -.++......|+.+..+....+.+. ...+...
T Consensus 523 eALmElIk~st-~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~-~d~iM~l 600 (859)
T KOG1241|consen 523 EALMELIKNST-DDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV-SDQIMGL 600 (859)
T ss_pred HHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH-HHHHHHH
Confidence 66666655431 1111112222222222 11 1221 2455666666776665444333332 1123333
Q ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHhh-hcccchhHHHHHHHHHHHhhhcC----cc--c
Q psy10461 1117 LLELLKA-HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNL-KVQERQNRVCTTVAIAIVAETCS----PF--T 1182 (1359)
Q Consensus 1117 LLelLkD-~~~sVR~AAv~tLg~IAk~~Gpe------dVlp~LL~~L-k~qe~~VRv~ta~AIg~LAea~g----P~--~ 1182 (1359)
|+.++.. ...-|.+.|.-+++.+++.+|++ .+.|+|+.-| +.+|++|=.++.--+|.|+.+++ || .
T Consensus 601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~ 680 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDE 680 (859)
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4566665 34458899999999999999984 5777887777 45666644443344556666665 44 7
Q ss_pred cHHHHHHhcCCCC--chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHH---hcc--Ch------HHHHHHHHHHHH
Q psy10461 1183 VLPALMNEYRVPE--LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL---MDR--DL------VHRQTACATIKH 1249 (1359)
Q Consensus 1183 VLPaLLnlLkDpE--~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL---~D~--D~------~VRqtA~saIk~ 1249 (1359)
++..|+++|..|. ++|+..|+++++.|+-.||..+..|+..|+|+|+.+. .|+ +. .+|..+..+-..
T Consensus 681 ~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~g 760 (859)
T KOG1241|consen 681 LMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTG 760 (859)
T ss_pred HHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999877 8899999999999999999999999999999999886 233 11 244444444333
Q ss_pred HHhhhcCCC---chhHHhhhHHhhhc---cccc---CChHHHHHHHHHHHHHHHhhchHH
Q psy10461 1250 MALGVYGFG---CEDALTHLLNYVWP---NIFE---TSPHLVQAFMDAVEGLRVALGPVR 1300 (1359)
Q Consensus 1250 LAl~~~glG---~EdaliHlLnlvlP---nI~E---tsp~Vi~~ileaLeaLr~aLG~~~ 1300 (1359)
+ +.+++ .-..+..+++.++. .|.. -+.-+...++.-|+-|+...|.++
T Consensus 761 i---~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~ 817 (859)
T KOG1241|consen 761 I---IQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGV 817 (859)
T ss_pred H---HHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccch
Confidence 3 24443 11222222222322 2221 223355667888888888888543
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.20 E-value=5.5e-09 Score=127.42 Aligned_cols=368 Identities=17% Similarity=0.179 Sum_probs=240.9
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik 981 (1359)
.++..+...+.|+++.||+.|+.++.++... .|+.+.. .+++.+..++.|....+ ..++.++..+ ..-+....
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~----~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVED----ELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHG----GHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHH----HHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh
Confidence 3355566777788888888888888888874 4442221 14555666666554443 3334344444 11111112
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
..++.+...+..++.+.++.++..+..++..++..-..... . ..++..+...|....+.|+..++.++-.+...
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~-~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~--- 261 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD-K--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS--- 261 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh-H--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---
Confidence 56677777777777888888888888888877654321110 0 34555566666555556655554444432211
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk-D~~~sVR~AAv~tLg~IA 1140 (1359)
. +.....++.+..++.++.+.+|..+++.|..|+......+... ...+..|. +....||..+++.+..++
T Consensus 262 ~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~------~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 262 P---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQ------SLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp H---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTH------HHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred h---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhh------hhhhheecCCCChhHHHHHHHHHhhcc
Confidence 1 1245677888888999999999999999999987653222211 11123455 778899999999999999
Q ss_pred HHhCchhHHHHHHHhhh-cccchhHHHHHHHHHHHhhhcCcc--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhc
Q psy10461 1141 KAIGPHDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG 1217 (1359)
Q Consensus 1141 k~~GpedVlp~LL~~Lk-~qe~~VRv~ta~AIg~LAea~gP~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~ 1217 (1359)
..-+.+.++..|+..++ ..+..+|..++.+++.+|....+. ..+..+++.++.....+...++..+..+.......
T Consensus 333 ~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~- 411 (526)
T PF01602_consen 333 NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL- 411 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT-
T ss_pred cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh-
Confidence 87666788888888884 336668999999999999888553 78999999999988888888888877766553322
Q ss_pred hhhHHhHHHHHHHHHhc-cChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhh
Q psy10461 1218 KDYIYAVTPLLEDALMD-RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 1296 (1359)
Q Consensus 1218 kdYL~~VlPlLedaL~D-~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aL 1296 (1359)
. ..++..|.+.+.+ .+..++..++..|+..+-.+.. .+ ....++..+..+..++++.++..++.++-.+....
T Consensus 412 ~---~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 412 R---EKILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp H---HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred h---HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhC
Confidence 1 2345555555554 4566778888888876533332 11 34566777777777788899999999998887776
Q ss_pred ch
Q psy10461 1297 GP 1298 (1359)
Q Consensus 1297 G~ 1298 (1359)
+.
T Consensus 486 ~~ 487 (526)
T PF01602_consen 486 PE 487 (526)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.18 E-value=4.7e-09 Score=141.84 Aligned_cols=387 Identities=16% Similarity=0.166 Sum_probs=254.0
Q ss_pred cccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhh
Q psy10461 897 RLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQ 975 (1359)
Q Consensus 897 ~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~ 975 (1359)
+.+.....++.|+..|++++..+|+.|+..|..++..- .+....-+..-.+..|+.+|.....+. +.++-+++.++..
T Consensus 440 ~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~ 518 (2102)
T PLN03200 440 EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV-DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH 518 (2102)
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 33444445899999999999999999999998887521 110110011123455566666544333 4455566666642
Q ss_pred cccccccch--HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy10461 976 LGKRVKPYL--PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALK 1053 (1359)
Q Consensus 976 Lg~~ikPyl--~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~ 1053 (1359)
....+..+ ...++.|.+++++.+..++..|++.|.+++..-. ...+ +.|...|..+.+.+...++.+++
T Consensus 519 -~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d----~~~I----~~Lv~LLlsdd~~~~~~aL~vLg 589 (2102)
T PLN03200 519 -SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD----AATI----SQLTALLLGDLPESKVHVLDVLG 589 (2102)
T ss_pred -cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc----hhHH----HHHHHHhcCCChhHHHHHHHHHH
Confidence 22233333 3578889999999999999999999999975433 2222 33445565556777777778887
Q ss_pred HHHHHhCCCCCCC---chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHH
Q psy10461 1054 AIVNVIGMTKMTP---PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRR 1130 (1359)
Q Consensus 1054 aIa~vlG~~~lsp---~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~ 1130 (1359)
.+....+.+.+.. ....-+|.|..++++.+.++++.++.+|..++....+.....-....+..++.+|++....+|+
T Consensus 590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~k 669 (2102)
T PLN03200 590 HVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVAT 669 (2102)
T ss_pred HHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHH
Confidence 7766543221100 0135789999999999999999999999999873332211110011344556788888999999
Q ss_pred HHHHHHHHHHHHhCch--------hHHHHHHHhhhcccchhHHHHHHHHHHHhhhc------CccccHHHHHHhcCCCCc
Q psy10461 1131 ATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC------SPFTVLPALMNEYRVPEL 1196 (1359)
Q Consensus 1131 AAv~tLg~IAk~~Gpe--------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~------gP~~VLPaLLnlLkDpE~ 1196 (1359)
.++.+|+.++.....+ .+++.|++.|+..+..++..++.+++.++..- +....++.|+..|++...
T Consensus 670 eAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 670 QSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL 749 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh
Confidence 9999999999632221 34666888898877778888788888776433 334789999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhh--hchhhH---HhHHHHHHHHHhccChHHHHH--HHHHHHHHHhhhcCCCc---hhHHh--
Q psy10461 1197 NVQNGVLKALSFLFEYIGE--MGKDYI---YAVTPLLEDALMDRDLVHRQT--ACATIKHMALGVYGFGC---EDALT-- 1264 (1359)
Q Consensus 1197 nVR~~VlkaLs~Iae~IG~--~~kdYL---~~VlPlLedaL~D~D~~VRqt--A~saIk~LAl~~~glG~---Edali-- 1264 (1359)
.+|.+++++|..++..... ...+|+ ..|.|+ .++|.-.|.+.-.+ |..++..++....+.++ .|+..
T Consensus 750 ~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l-~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e 828 (2102)
T PLN03200 750 EGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLAL-VDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAE 828 (2102)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHH-HHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHh
Confidence 9999999999888876542 233455 355564 44665555444443 67788777765444433 23322
Q ss_pred --hhHHhhhcccccCChHHHHHHHHHHHHHHH
Q psy10461 1265 --HLLNYVWPNIFETSPHLVQAFMDAVEGLRV 1294 (1359)
Q Consensus 1265 --HlLnlvlPnI~Etsp~Vi~~ileaLeaLr~ 1294 (1359)
+-|..+..-+-+.+|.+....++-|+.+|.
T Consensus 829 ~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 829 VPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred ccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 223334334455788888888888888775
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.15 E-value=2e-08 Score=122.50 Aligned_cols=386 Identities=17% Similarity=0.159 Sum_probs=250.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPY 983 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPy 983 (1359)
+..++..++ .+..-|+.++..+-.+.. +|.. ++ .+.-.++.++++...+. +.+.-.+..+...-+ ..
T Consensus 9 l~~~~~~~~-~~~~~~~~~l~kli~~~~-~G~~-~~-----~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~ 76 (526)
T PF01602_consen 9 LAKILNSFK-IDISKKKEALKKLIYLMM-LGYD-IS-----FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----EL 76 (526)
T ss_dssp HHHHHHCSS-THHHHHHHHHHHHHHHHH-TT----G-----STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHH-cCCC-Cc-----hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hH
Confidence 344455555 577788888888776554 6764 11 34455555555443333 333322333333222 23
Q ss_pred hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 984 l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
+--+++.+..-++++++.+|..|..++++++ ..++++.+++.+.+.|.+..|.|++.++-++..+..... +
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~- 147 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-D- 147 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-C-
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-H-
Confidence 4557788888899999999999999999987 246677788889999999999999988888888887732 1
Q ss_pred CCCchhc-hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10461 1064 MTPPIKD-LLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1064 lsp~l~~-lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~ 1142 (1359)
.... +++.+..+++|.++.|+.+|+.++..+ .+.+.....-...+...+..++.+....++..+++.|..++..
T Consensus 148 ---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 148 ---LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp ---CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred ---HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 1344 789999999999999999999999998 2211110010112222333455666667777777777766543
Q ss_pred hCc----hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-ccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhc
Q psy10461 1143 IGP----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG 1217 (1359)
Q Consensus 1143 ~Gp----edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~ 1217 (1359)
-.. ..++..+.+.+++....|.+.++.++..+..... -..+++.|...+.++++|+|..++.+|..++..-.+
T Consensus 223 ~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~-- 300 (526)
T PF01602_consen 223 EPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP-- 300 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH--
T ss_pred ChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch--
Confidence 111 2366667777776666677777777665544322 126789999999999999999999998887665422
Q ss_pred hhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccC-ChHHHHHHHHHHHHHHHhh
Q psy10461 1218 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET-SPHLVQAFMDAVEGLRVAL 1296 (1359)
Q Consensus 1218 kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Et-sp~Vi~~ileaLeaLr~aL 1296 (1359)
.+......+.-+..|.|..+|..+..++..++ .+.-+..+++.+...+.+. +++++..++.++..++...
T Consensus 301 --~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~-------~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 301 --AVFNQSLILFFLLYDDDPSIRKKALDLLYKLA-------NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp --HHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhhhhhheecCCCChhHHHHHHHHHhhcc-------cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 22222222333455889999988888888876 2233344555566655444 7779988999998888777
Q ss_pred ch--HHHHHhHhhhhccccccchhhHHHHHHhh
Q psy10461 1297 GP--VRILQYVLQGLFHPARKVRDVYWKIYNSL 1327 (1359)
Q Consensus 1297 G~--~~ll~~vLpgLfhpA~kvrd~~WRvyn~~ 1327 (1359)
.. +.+++.++.-+......+.+..|-..-.+
T Consensus 372 ~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~l 404 (526)
T PF01602_consen 372 PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDL 404 (526)
T ss_dssp GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhhhccccccchHHHHHHHH
Confidence 54 45777777777766566667777666443
No 25
>KOG0166|consensus
Probab=99.14 E-value=6.6e-09 Score=125.21 Aligned_cols=358 Identities=16% Similarity=0.173 Sum_probs=230.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCc-hhH-HHHHHHHHHHHhhcccccc-
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT-TED-VVMLNGFGTIVNQLGKRVK- 981 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~-~eD-~v~lkaLg~Lae~Lg~~ik- 981 (1359)
+...+..+...+...+..+..++.++.+.-.--.++.-+..-+++.|+-++.... ..- ..+.-++-.++....+..+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5667778888888889999999988775322211222111123333344443222 111 1222334455554433322
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh-HHHHHHHHHHHHHHHHhC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP-EVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p-EVl~siL~AL~aIa~vlG 1060 (1359)
..-...+|.+..++..++..||.+|++.|++||..-..|...-+-...+.+|+..+....+ ..++++.++|..++..-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 2225567889999999999999999999999997666655433334456667777755555 456678899999887532
Q ss_pred CCCCCCc---hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10461 1061 MTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG 1137 (1359)
Q Consensus 1061 ~~~lsp~---l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg 1137 (1359)
.+|+ +..+||.|..++.+....|...+.++|..+++-+.+-+..---..+|..+.++|......|+-.|..++|
T Consensus 228 ---P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 228 ---PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred ---CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 3343 5578999999999999999999999999998855433221101125556667777777778778888888
Q ss_pred HHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcC-CCCchhHHHHHHHHHHHHHHhhh-
Q psy10461 1138 YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGE- 1215 (1359)
Q Consensus 1138 ~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLk-DpE~nVR~~VlkaLs~Iae~IG~- 1215 (1359)
.|+. |.+..-..+++ ..+||.|.+++. .++..+|..+||+|+.|.. |.
T Consensus 305 NIvt--G~d~QTq~vi~--------------------------~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~ 354 (514)
T KOG0166|consen 305 NIVT--GSDEQTQVVIN--------------------------SGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQ 354 (514)
T ss_pred ceee--ccHHHHHHHHh--------------------------cChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCH
Confidence 8765 44333333332 147899999998 6777799999999998876 43
Q ss_pred -hchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhh--hHHhhhcccccCChHHHHHHHHHHHH
Q psy10461 1216 -MGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEG 1291 (1359)
Q Consensus 1216 -~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliH--lLnlvlPnI~Etsp~Vi~~ileaLea 1291 (1359)
....++ .-++|.|..+++..+-+.|.-|+.+|..++.+...- ...-+.+ .+..+...+.-.+..++..++++++.
T Consensus 355 ~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~-qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 355 EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE-QIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLEN 433 (514)
T ss_pred HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH-HHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHH
Confidence 233333 468999999999999999999999999875332200 0000000 11222233333555677888888887
Q ss_pred HHHhh
Q psy10461 1292 LRVAL 1296 (1359)
Q Consensus 1292 Lr~aL 1296 (1359)
+-.+-
T Consensus 434 il~~~ 438 (514)
T KOG0166|consen 434 ILKVG 438 (514)
T ss_pred HHHHH
Confidence 76653
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.14 E-value=1.1e-08 Score=138.49 Aligned_cols=348 Identities=10% Similarity=0.099 Sum_probs=243.4
Q ss_pred ccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHh
Q psy10461 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVN 974 (1359)
Q Consensus 896 A~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae 974 (1359)
.+.+...+.+..|+..|+..+..++..++.+|..++.. +.+.+..-...-.+..|+.+|.+.+.+. ..++..++.++.
T Consensus 397 ~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~ 475 (2102)
T PLN03200 397 SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD 475 (2102)
T ss_pred HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 33444445677788889989999999999999888752 2222221111124556666776654444 566677777765
Q ss_pred hccc-ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHH--HHHHHHHHHHhcccChHHHHHHHHH
Q psy10461 975 QLGK-RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM--GHLGVVLYEYLGEEYPEVLGSILGA 1051 (1359)
Q Consensus 975 ~Lg~-~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL--~~Ll~iLle~L~De~pEVl~siL~A 1051 (1359)
.-.. ...-.-...+|.|..+|...+..+|.+|+++|++|+..-.++ ...+ ...+++|++.|.+..+++...++.+
T Consensus 476 ~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi--r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~A 553 (2102)
T PLN03200 476 EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI--RACVESAGAVPALLWLLKNGGPKGQEIAAKT 553 (2102)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH--HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 3332 111112457889999999999999999999999998632221 1222 2467888888987778888888888
Q ss_pred HHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHH---HHHHHHHHHHHHHhhHHHH
Q psy10461 1052 LKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE---WMRICFELLELLKAHKKAI 1128 (1359)
Q Consensus 1052 L~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE---~mrIc~eLLelLkD~~~sV 1128 (1359)
+..+..... .+.++.+..++......++..+++.++.|...+...-...+ -......|.++|+..+..+
T Consensus 554 L~nLi~~~d--------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~i 625 (2102)
T PLN03200 554 LTKLVRTAD--------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEET 625 (2102)
T ss_pred HHHHHhccc--------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHH
Confidence 888866422 24567788888888889999999999998764432211110 0113345567888888999
Q ss_pred HHHHHHHHHHHHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc--------cccHHHHHHhcCC
Q psy10461 1129 RRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRV 1193 (1359)
Q Consensus 1129 R~AAv~tLg~IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP--------~~VLPaLLnlLkD 1193 (1359)
++.|+.+|..|+..-.. ...++.|+..|++.+..++..++.|++.++..... ..++|.|+++|++
T Consensus 626 kk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~ 705 (2102)
T PLN03200 626 QEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS 705 (2102)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC
Confidence 99999999888763111 23466788888887777888889999998853221 2699999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhc
Q psy10461 1194 PELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 1255 (1359)
Q Consensus 1194 pE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~ 1255 (1359)
++..|+..++.+|..++..-.. ..+.. ..++|.|.+++.+.+..+|..|+.++..|+.+..
T Consensus 706 ~d~~v~e~Al~ALanLl~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 706 SSIEVAEQAVCALANLLSDPEV-AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred CChHHHHHHHHHHHHHHcCchH-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 9999999999999888775322 22223 4567888889988889999989999988874433
No 27
>KOG1242|consensus
Probab=99.13 E-value=2.5e-09 Score=129.46 Aligned_cols=329 Identities=17% Similarity=0.230 Sum_probs=231.7
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHhhcccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-EDVVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD~v~lkaLg~Lae~Lg~~ik 981 (1359)
.+++.++..+-|....||..|.++...+...+.+..+.. ++..++..+.+..= .-..++..+|.+++..+..+.
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 457888899999999999999999999999999874432 22223322222110 115678889999998888888
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
-+++.|+|.+...+.|..+.||.++-+++-+++.++.. ..+..++|.|++.+++-.. ....|+..|.+-.=+--.
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN----~dI~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN----PDIQKIIPTLLDALADPSC-YTPECLDSLGATTFVAEV 365 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHhcCccc-chHHHHHhhcceeeeeee
Confidence 89999999999999999999999999999999999983 3478899999999976321 233343444332111000
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHH
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL----LKAHKKAIRRATVNTFG 1137 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLel----LkD~~~sVR~AAv~tLg 1137 (1359)
+ .|.+.=++|-+..-+.+++...++.++..++.++..-. ++.++......|+|- +.|...++|..+..+||
T Consensus 366 ~--~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve---Dp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 366 D--APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE---DPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred c--chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc---CHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 1 23344455555555668888888999999999987543 233333344445544 45667899999999999
Q ss_pred HHHHHhCch---hHHHHHHHhhhcccch-hHHHHHHHHHHHhhhcCcc---ccHHHHHHhcCCC--CchhHHHHHHHHHH
Q psy10461 1138 YIAKAIGPH---DVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCSPF---TVLPALMNEYRVP--ELNVQNGVLKALSF 1208 (1359)
Q Consensus 1138 ~IAk~~Gpe---dVlp~LL~~Lk~qe~~-VRv~ta~AIg~LAea~gP~---~VLPaLLnlLkDp--E~nVR~~VlkaLs~ 1208 (1359)
.+-+..|.. +.+|.+.+.++..... -|..++..++.+....+-. +++|.++...... .+-+|-++++-+..
T Consensus 441 ~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~ 520 (569)
T KOG1242|consen 441 ALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYL 520 (569)
T ss_pred HHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhc
Confidence 999988874 5667776666543322 3566566666665555543 7888887776533 34477777777666
Q ss_pred HHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHH
Q psy10461 1209 LFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT 1246 (1359)
Q Consensus 1209 Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~sa 1246 (1359)
+-...|..++.|++.+++.+.+.+.|.|..+|.++...
T Consensus 521 lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 521 LPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred cchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 65556667889999999999988889999888765543
No 28
>KOG0166|consensus
Probab=99.05 E-value=9e-09 Score=124.08 Aligned_cols=309 Identities=17% Similarity=0.196 Sum_probs=217.8
Q ss_pred ccccccChHhHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhcCc---cchhhhHHHHHHHHHHHhhccCchhH-HHHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLK-DENEQYRKMVMESIEKTMSNLGA---ADIDSRLEEQLIDGILYAFQEQTTED-VVMLNG 968 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LK-Des~~VR~~Aa~~L~~Ia~~LGp---e~l~~~L~~~Lld~LLplLqd~~~eD-~v~lka 968 (1359)
-+...+.+ -+|+.|+..|+ +.++.+|..|+-+|+.||.--.. ..++. -.+..|+.+++++..+. +.++-+
T Consensus 101 pi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a----gavp~fi~Ll~s~~~~v~eQavWA 175 (514)
T KOG0166|consen 101 PIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA----GAVPIFIQLLSSPSADVREQAVWA 175 (514)
T ss_pred CHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC----CchHHHHHHhcCCcHHHHHHHHHH
Confidence 45555555 67999999997 77899999999999999972111 11111 12334566667665554 555556
Q ss_pred HHHHHhhcccccccc--hHhHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHH
Q psy10461 969 FGTIVNQLGKRVKPY--LPQICGTILWRLNNKSA-KVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVL 1045 (1359)
Q Consensus 969 Lg~Lae~Lg~~ikPy--l~qILpiIl~LL~Des~-~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl 1045 (1359)
||.++.-... .+.| -..++..++.++..... ...+.+++++++|+.--.+....+.+..++++|...|...+++|+
T Consensus 176 LgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl 254 (514)
T KOG0166|consen 176 LGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL 254 (514)
T ss_pred HhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH
Confidence 6666544332 2222 13455666666666554 677789999999987654333346788899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHH--HHHHHHHHHHH
Q psy10461 1046 GSILGALKAIVNVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLK 1122 (1359)
Q Consensus 1046 ~siL~AL~aIa~vlG~~~lsp-~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~m--rIc~eLLelLk 1122 (1359)
.-+++|+..+....... +.- .....+|+++.+|.+....|+-.|+.++|.|+. |.++.... ++ .....|..+|.
T Consensus 255 ~Da~WAlsyLsdg~ne~-iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt-G~d~QTq~-vi~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 255 TDACWALSYLTDGSNEK-IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT-GSDEQTQV-VINSGALPVLSNLLS 331 (514)
T ss_pred HHHHHHHHHHhcCChHH-HHHHHHccchHHHHHHHcCCCcccccHHHhhccceee-ccHHHHHH-HHhcChHHHHHHHhc
Confidence 99999999887542111 000 012588999999999999999999999999775 44322211 11 12233456666
Q ss_pred -hhHHHHHHHHHHHHHHHHHHhCch---------hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc--------ccH
Q psy10461 1123 -AHKKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--------TVL 1184 (1359)
Q Consensus 1123 -D~~~sVR~AAv~tLg~IAk~~Gpe---------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~--------~VL 1184 (1359)
.+..+||+.|+=+++.|+. |.+ .++|.|+..|...+...|.-++-||+.++-...+. .++
T Consensus 332 ~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI 409 (514)
T KOG0166|consen 332 SSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGII 409 (514)
T ss_pred cCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCc
Confidence 4577899999999999987 553 46778888899888889999999999887766553 799
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHh
Q psy10461 1185 PALMNEYRVPELNVQNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1185 PaLLnlLkDpE~nVR~~VlkaLs~Iae~I 1213 (1359)
+.|.++|..++..+-..++-+|+.|.+.-
T Consensus 410 ~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 410 KPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 99999998777777677788887777654
No 29
>KOG0212|consensus
Probab=99.04 E-value=7.6e-08 Score=114.92 Aligned_cols=360 Identities=15% Similarity=0.129 Sum_probs=258.3
Q ss_pred HHHHh-hhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 905 INRVV-DDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 905 I~~Ll-~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
|..|+ +.....+...|+-++..+..++-++|.++.. ..+.++.-+++.|.|+.... ..+|..+..++......+-+
T Consensus 44 I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~--Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~ 121 (675)
T KOG0212|consen 44 ISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG--YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV 121 (675)
T ss_pred HHHHHHHhccCcccccccchHHHHHHHHHHhccccHH--HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc
Confidence 44333 3556778888999999999999999998543 55567777888888876655 67888999999999888889
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh-hhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK-TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~-~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
|.+.|...+-.+..|.++.||. +|+++-++...+- +....--+..++|.|-+.+-...|..+..+++=+.-+..+.+.
T Consensus 122 ~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~ 200 (675)
T KOG0212|consen 122 YFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL 200 (675)
T ss_pred chHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH
Confidence 9999999999999999999986 5677777766543 2111235677899999999888899998888888888777665
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh---hCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD---RGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 1138 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~---~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~ 1138 (1359)
+ |-.++.++++.++..|.|.+..||..+-.+++.+-. ..+..++.. +....+.+-+..++..++.-|+.=+..
T Consensus 201 ~-m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~---~~i~vlv~~l~ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 201 E-MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYD---DMINVLVPHLQSSEPEIQLKALTWIQE 276 (675)
T ss_pred H-HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcc---cchhhccccccCCcHHHHHHHHHHHHH
Confidence 4 444566788888888999999999888777776532 233333222 223233455667788899999888888
Q ss_pred HHHHhCch------hHHHHHHHhhhcccc-hhHHHHHHHHHHHhhhcCcc---------ccHHHHHHhcCCCCchhHHHH
Q psy10461 1139 IAKAIGPH------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSPF---------TVLPALMNEYRVPELNVQNGV 1202 (1359)
Q Consensus 1139 IAk~~Gpe------dVlp~LL~~Lk~qe~-~VRv~ta~AIg~LAea~gP~---------~VLPaLLnlLkDpE~nVR~~V 1202 (1359)
+.+..|.+ .++..+|+.+...+. +.+.++...-+.+..-|+.+ .++-.+...+.+..-+.|..|
T Consensus 277 fV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~ 356 (675)
T KOG0212|consen 277 FVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAV 356 (675)
T ss_pred HhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHH
Confidence 88887764 344455666665554 57777665555554444321 577788888889888899999
Q ss_pred HHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhh
Q psy10461 1203 LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVW 1271 (1359)
Q Consensus 1203 lkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvl 1271 (1359)
+.=+..+....+...--+.+.+.+.|...|.|++..|--.+.+++.+++..-...++-..+..+|+++.
T Consensus 357 L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 357 LNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred HHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHh
Confidence 988888888777644444568888888888898776666678888888744333333333344444443
No 30
>KOG1240|consensus
Probab=99.03 E-value=1.1e-08 Score=129.45 Aligned_cols=268 Identities=17% Similarity=0.218 Sum_probs=199.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCc-----hhchH
Q psy10461 998 KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP-----IKDLL 1072 (1359)
Q Consensus 998 es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~-----l~~lL 1072 (1359)
....-|.+|.+++..++..+. .+..|..++|.++..+.|.+++|+..++..+-.+...+ +.+.+. ..-++
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V--r~~~~~daniF~eYlf 509 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALV--RDIPPSDANIFPEYLF 509 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc--cCCCcccchhhHhhhh
Confidence 467789999999999999887 46788999999999999999999987666665554443 222221 22367
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhhCCCchh--------------hH----------H---HHHHHH-HHHHHHHh
Q psy10461 1073 PRLTPILKN-RHEKVQENCIDLVGRIADRGPEYVS--------------AR----------E---WMRICF-ELLELLKA 1123 (1359)
Q Consensus 1073 P~L~~LLkD-r~~rVR~AAielIg~IA~~g~e~v~--------------~k----------E---~mrIc~-eLLelLkD 1123 (1359)
|.|..++.| ....||-+.+..|+.+|.....|.. .. + +..... ....+|.|
T Consensus 510 P~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd 589 (1431)
T KOG1240|consen 510 PHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD 589 (1431)
T ss_pred hhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC
Confidence 888888888 6678999999999999885322211 10 1 111221 22467889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCch----hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc----ccHHHHHHhcCCCC
Q psy10461 1124 HKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF----TVLPALMNEYRVPE 1195 (1359)
Q Consensus 1124 ~~~sVR~AAv~tLg~IAk~~Gpe----dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~----~VLPaLLnlLkDpE 1195 (1359)
...-||++-.+.++-|+.+||.+ -++..|+..|+..|+++|.+-...|..||--+|+. .++|.|..-|.|+|
T Consensus 590 ~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E 669 (1431)
T KOG1240|consen 590 SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE 669 (1431)
T ss_pred CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc
Confidence 99999999999999999999984 47888999999999999999888888887777753 69999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccc
Q psy10461 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI 1274 (1359)
Q Consensus 1196 ~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI 1274 (1359)
.-|=..|+.+|+.+++. |-.-+.++..++.+.-=+|--.+.-+|++++..|.+++ .+++..|+---+.|++=|.+
T Consensus 670 E~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~---~~ls~advyc~l~P~irpfl 744 (1431)
T KOG1240|consen 670 EAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIA---RQLSAADVYCKLMPLIRPFL 744 (1431)
T ss_pred hhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHH---hhhhhhhheEEeehhhHHhh
Confidence 99999999999999885 43333333333333333566788899999999998887 56655555555666666665
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=98.96 E-value=1.3e-06 Score=111.37 Aligned_cols=361 Identities=15% Similarity=0.124 Sum_probs=216.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHH--------------
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNG-------------- 968 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lka-------------- 968 (1359)
++..+...+.|.++.||+.|+-++.++-. +.|+.+... .+++.+.-++.|....+ ..++.+
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~-~~pelv~~~---~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l 216 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFH-DDMQLFYQQ---DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES 216 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCccccccc---chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH
Confidence 35555677889999999999999999876 333322110 22333333344433322 111111
Q ss_pred ----HHHHHhhcccc------------------cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHH
Q psy10461 969 ----FGTIVNQLGKR------------------VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM 1026 (1359)
Q Consensus 969 ----Lg~Lae~Lg~~------------------ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL 1026 (1359)
+..+++.+++. -..-...|+..+..++++.++.|--+|+.++..++..+........+
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~ 296 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT 296 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 22222222210 01224578888899999999999999999999987654321123455
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchh
Q psy10461 1027 GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVS 1106 (1359)
Q Consensus 1027 ~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~ 1106 (1359)
.++..+|+..+ ...+++.-.++..+..+....- ..+...+..++-.. +....||...++++-.++....
T Consensus 297 ~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P-----~lf~~~~~~Ff~~~-~Dp~yIK~~KLeIL~~Lane~N---- 365 (746)
T PTZ00429 297 VRVNTALLTLS-RRDAETQYIVCKNIHALLVIFP-----NLLRTNLDSFYVRY-SDPPFVKLEKLRLLLKLVTPSV---- 365 (746)
T ss_pred HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCH-----HHHHHHHHhhhccc-CCcHHHHHHHHHHHHHHcCccc----
Confidence 55666666554 3467777777777766665320 11222222222223 4455699999999999876322
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc-cc
Q psy10461 1107 AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-TV 1183 (1359)
Q Consensus 1107 ~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~-~V 1183 (1359)
+.+++.+|.....+....+++.++.++|.+|..+.. +.++..|++.+......+. .+..++-.|-..+ |. .+
T Consensus 366 ---v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~Ilrky-P~~~i 440 (746)
T PTZ00429 366 ---APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKY-PELLM 440 (746)
T ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHC-ccHHH
Confidence 344667777777777789999999999999998764 4677778777764333332 2344444443332 33 46
Q ss_pred HHHHHHhc---CCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCch
Q psy10461 1184 LPALMNEY---RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE 1260 (1359)
Q Consensus 1184 LPaLLnlL---kDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~E 1260 (1359)
++.|+..+ .-.+++.|.+++|-|+..++.+.. +.+++..+ + +-+.+++..||.....++..+.+..+. ..+
T Consensus 441 l~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~~~---i-~~f~~E~~~VqlqlLta~vKlfl~~p~-~~~ 514 (746)
T PTZ00429 441 LDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQRF---I-DTIMEHEQRVQLAILSAAVKMFLRDPQ-GME 514 (746)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-HHHHHHHH---H-hhhccCCHHHHHHHHHHHHHHHhcCcH-HHH
Confidence 77777654 346678899999999998888753 33333222 2 233467788887666666666554442 123
Q ss_pred hHHhhhHHhhhcccccCChHHHHHHHHHHHHH
Q psy10461 1261 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1261 daliHlLnlvlPnI~Etsp~Vi~~ileaLeaL 1292 (1359)
..+.++|..... .+.+++||.+...-+.-+
T Consensus 515 ~~l~~vL~~~t~--~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 515 PQLNRVLETVTT--HSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHHHHHHHh--cCCChhHHHHHHHHHHHH
Confidence 334343322221 247889999988766444
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=6.9e-06 Score=104.88 Aligned_cols=278 Identities=17% Similarity=0.127 Sum_probs=147.6
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHh
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQ 986 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~q 986 (1359)
|-..|++.+..-|+.|++++-.... +|-+ +. .++..++-+++....+. +.+.-.+... ++.-...+--
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt-~G~D-vS-----~LF~dVvk~~~S~d~elKKLvYLYL~~y----a~~~pelalL 105 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMT-MGRD-VS-----YLFVDVVKLAPSTDLELKKLVYLYVLST----ARLQPEKALL 105 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH-CCCC-ch-----HHHHHHHHHhCCCCHHHHHHHHHHHHHH----cccChHHHHH
Confidence 3445556677777788877655444 5643 21 35555555565544443 2222112222 2211112334
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 1066 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp 1066 (1359)
.++.+..=++|+++.||--|..++++|. ...+++.++..+...|.|..|-|++.++-++..+...-. +.+
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir-------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv-- 175 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIR-------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLF-- 175 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccc--
Confidence 4677777777888888888887777763 234556677777777878788888876666666655321 100
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc-
Q psy10461 1067 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP- 1145 (1359)
Q Consensus 1067 ~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp- 1145 (1359)
....+++.+..++.|.++.|..+|+.++-.|...++..+.. ....+..++..|.+-...-+- ..|..|+.. .|
T Consensus 176 ~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi---~IL~lL~~y-~P~ 249 (746)
T PTZ00429 176 YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQL---YILELLAAQ-RPS 249 (746)
T ss_pred cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHH---HHHHHHHhc-CCC
Confidence 12346777777778888888888888888776654322110 001111222233221111112 223333332 22
Q ss_pred -----hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc-------ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHh
Q psy10461 1146 -----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-------TVLPALMNEYRVPELNVQNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1146 -----edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~-------~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~I 1213 (1359)
.+++..+++.|++.+..|-+.++.+|-.++..+.+. .+-+.++.+ ....+|+|..++..|..+....
T Consensus 250 ~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 250 DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC
Confidence 145555666666555556666666655555444322 122333444 2455677777777765555443
No 33
>KOG0915|consensus
Probab=98.82 E-value=1.7e-06 Score=112.29 Aligned_cols=300 Identities=19% Similarity=0.220 Sum_probs=200.3
Q ss_pred HHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChH
Q psy10461 964 VMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE 1043 (1359)
Q Consensus 964 v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pE 1043 (1359)
=+.-+||.++...+..+.||+.+|+|-+-..-=|++..|+++-.++|..|...-+... +.++..++--|+-.|.+.---
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y~neIl~eLL~~lt~kewR 1054 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEYLNEILDELLVNLTSKEWR 1054 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHHHHHHHHHHHHhccchhHH
Confidence 3456799999999999999999999999888889999999999999999976544221 345555555566566433334
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHH----HhcCCCHHHHHHHHHHHHHHHhhCC---CchhhHHHHHHHHH
Q psy10461 1044 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP----ILKNRHEKVQENCIDLVGRIADRGP---EYVSAREWMRICFE 1116 (1359)
Q Consensus 1044 Vl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~----LLkDr~~rVR~AAielIg~IA~~g~---e~v~~kE~mrIc~e 1116 (1359)
|+-++|-|+..+.+.-..+. ..+.+|.+-. ...|-++.||+++=.+...+++.|. +......--++...
T Consensus 1055 VReasclAL~dLl~g~~~~~----~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~ 1130 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQ----VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDI 1130 (1702)
T ss_pred HHHHHHHHHHHHHcCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHH
Confidence 66677788888876532221 3445554433 3458889999888766666655332 11111112234555
Q ss_pred HHHHHHh-----hHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHhhhcccchh-HHHHHHHHHHHhhhc------
Q psy10461 1117 LLELLKA-----HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQN-RVCTTVAIAIVAETC------ 1178 (1359)
Q Consensus 1117 LLelLkD-----~~~sVR~AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~qe~~V-Rv~ta~AIg~LAea~------ 1178 (1359)
+||+|-| ...+||+.++.++..|++..|.+ ++++-|++.+..-+.+| -+.++.+.++=.+++
T Consensus 1131 iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s 1210 (1702)
T KOG0915|consen 1131 ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS 1210 (1702)
T ss_pred HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 6787655 37899999999999999988774 45555555544333331 222222222211111
Q ss_pred ---------------------CccccHHHHHHhcCCCC-chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccC
Q psy10461 1179 ---------------------SPFTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD 1236 (1359)
Q Consensus 1179 ---------------------gP~~VLPaLLnlLkDpE-~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D 1236 (1359)
--++++|-+..++|..+ .+.|.+++.-+..+...+|...++|....+-.+.-.+.|++
T Consensus 1211 ~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN 1290 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN 1290 (1702)
T ss_pred hhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc
Confidence 11278999999998766 66888998888999999998777777666666655778899
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhc
Q psy10461 1237 LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP 1272 (1359)
Q Consensus 1237 ~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlP 1272 (1359)
..+|..-++++.+|+. +..+|-.+.++.-++-
T Consensus 1291 esv~kafAsAmG~L~k----~Ss~dq~qKLie~~l~ 1322 (1702)
T KOG0915|consen 1291 ESVRKAFASAMGYLAK----FSSPDQMQKLIETLLA 1322 (1702)
T ss_pred HHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Confidence 9999877889999863 2234445555555553
No 34
>KOG0212|consensus
Probab=98.82 E-value=3.2e-06 Score=101.45 Aligned_cols=395 Identities=15% Similarity=0.143 Sum_probs=250.8
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccC-ch-hHHHHHHHHHHHHhhcccccccchH
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ-TT-EDVVMLNGFGTIVNQLGKRVKPYLP 985 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~-~~-eD~v~lkaLg~Lae~Lg~~ikPyl~ 985 (1359)
+...|-|+.-.-|+.|+--+.+++..+--.+-..+.. .+++.+.--+.-+ .. -.+-.+.++..++-++|....+|+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~-k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIR-KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHH-HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 4556778888899999999999987654432222111 2333333222211 11 1145667777888889887777999
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCC-
Q psy10461 986 QICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM- 1064 (1359)
Q Consensus 986 qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~l- 1064 (1359)
+|++.++..+.|.+..||--||+.+=++|++.+... -...+.++-.|-...+|..+.|.++. ..++.+..-+-.+.-
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESAS 161 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccccc
Confidence 999999999999999999999999999999987321 12334455555555678777777766 777777666533322
Q ss_pred CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy10461 1065 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1065 sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~-g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
+=.+..++|-+...+-..+++.|...++-|..+-.. .-+++.. +..+.+.|+.+|.|...+||..+-.+++.+-..+
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~y--l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISY--LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhc--chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 123455666666556677899999998888776431 1111111 2336677889999999999998888887765555
Q ss_pred Cc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc------ccHHHHHHhcCCCCc-hhHHHHHHHHHHH
Q psy10461 1144 GP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF------TVLPALMNEYRVPEL-NVQNGVLKALSFL 1209 (1359)
Q Consensus 1144 Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~------~VLPaLLnlLkDpE~-nVR~~VlkaLs~I 1209 (1359)
.. .+.++.+++.+.+.+.-++..+..=+...-...|+. +++..++.++.|.+. +++......-..+
T Consensus 240 ~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 240 RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 32 356777888887777767766555455555544442 677777777777665 4444222222223
Q ss_pred HHHhhhh--chh-hHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhh---HHhhhcccccCChHHHH
Q psy10461 1210 FEYIGEM--GKD-YIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL---LNYVWPNIFETSPHLVQ 1283 (1359)
Q Consensus 1210 ae~IG~~--~kd-YL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHl---LnlvlPnI~Etsp~Vi~ 1283 (1359)
...++.. ..+ -+..++..|...+.|+...-|-++..=|.++--...+ ..+.|. ..-++..+-+.|.+|+.
T Consensus 320 ~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~----ql~~h~~~if~tLL~tLsd~sd~vvl 395 (675)
T KOG0212|consen 320 LKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG----QLLVHNDSIFLTLLKTLSDRSDEVVL 395 (675)
T ss_pred HHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc----hhhhhccHHHHHHHHhhcCchhHHHH
Confidence 3333321 111 1136778888888888877777666666665322222 233443 22234455568889998
Q ss_pred HHHHHHHHHHHhhch---HHHHHhHhhhhcc
Q psy10461 1284 AFMDAVEGLRVALGP---VRILQYVLQGLFH 1311 (1359)
Q Consensus 1284 ~ileaLeaLr~aLG~---~~ll~~vLpgLfh 1311 (1359)
..++-+..+|..-.. -.|++.+|..+-+
T Consensus 396 ~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e 426 (675)
T KOG0212|consen 396 LALSLLASICSSSNSPNLRKFLLSLLEMFKE 426 (675)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHHHHHhh
Confidence 888888887765433 4466666665443
No 35
>KOG1824|consensus
Probab=98.81 E-value=1.2e-05 Score=100.87 Aligned_cols=401 Identities=12% Similarity=0.171 Sum_probs=245.9
Q ss_pred hHhHHHHHhhhcCC------CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHH
Q psy10461 901 ASEIINRVVDDLKD------ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIV 973 (1359)
Q Consensus 901 ~~eiI~~Ll~~LKD------es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~La 973 (1359)
+..++.++...|++ +...+|.-+.+.+..+...+|.- .+.....++..+++.++.+-.-. +-++-++|.++
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~l--l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTL--LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhccc--CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 34456666665553 34459999999999999999864 22234466777777777655444 56667788888
Q ss_pred hhcccccccchHhHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh---cccChHHHHHHH
Q psy10461 974 NQLGKRVKPYLPQICGTIL-WRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL---GEEYPEVLGSIL 1049 (1359)
Q Consensus 974 e~Lg~~ikPyl~qILpiIl-~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L---~De~pEVl~siL 1049 (1359)
..++..+ | ..++.-++ .+-+...+..-+....+|+.++-..+.. ....+.++.+.+..+. .++..|-+-.++
T Consensus 203 ~~~~~~l--y-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r-~~~h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 203 SSCNRDL--Y-VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR-FGSHLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HhcCHHH--H-HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch-hhcccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 8888654 2 33343333 4444445555556667888877766521 1356778888888887 444455556799
Q ss_pred HHHHHHHHHhCCCCCCCchhchHHHHHHHh----------------------------------cCCCHHHHHHHHHHHH
Q psy10461 1050 GALKAIVNVIGMTKMTPPIKDLLPRLTPIL----------------------------------KNRHEKVQENCIDLVG 1095 (1359)
Q Consensus 1050 ~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL----------------------------------kDr~~rVR~AAielIg 1095 (1359)
++|+.....-..+ +.|...+++...+.-+ .|-+|+||++++.++.
T Consensus 279 Qale~fl~rcp~e-i~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~ 357 (1233)
T KOG1824|consen 279 QALESFLRRCPKE-ILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLE 357 (1233)
T ss_pred HHHHHHHHhChhh-hcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHH
Confidence 9999987765322 3333333333332211 0234999999999999
Q ss_pred HHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch-----------------------hHHHHH
Q psy10461 1096 RIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-----------------------DVLATL 1152 (1359)
Q Consensus 1096 ~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe-----------------------dVlp~L 1152 (1359)
.+...-.+.++.. +-.+|..++.-+|+++.+|+--.+.++..+-+..++- +-.+.+
T Consensus 358 a~IsSR~E~L~~~-~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~i 436 (1233)
T KOG1824|consen 358 AVISSRLEMLPDF-YQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLI 436 (1233)
T ss_pred HHHhccHHHHHHH-HHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHH
Confidence 9887555555554 4447777777889999999988888888776665540 011222
Q ss_pred HHhhhc--ccch--hHHHHHHHHHHHhhhc---C-c--cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHh---hh-hch
Q psy10461 1153 LNNLKV--QERQ--NRVCTTVAIAIVAETC---S-P--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYI---GE-MGK 1218 (1359)
Q Consensus 1153 L~~Lk~--qe~~--VRv~ta~AIg~LAea~---g-P--~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~I---G~-~~k 1218 (1359)
+..+.. .+++ -|.+...-+..+..++ + + +.++|.+...|.|.... -+....+|.++-..+ ++ .+.
T Consensus 437 Vkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss-s~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 437 VKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS-SNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch-HHHHHHHHHHHHHHHhcCChhhcc
Confidence 322221 1333 3555444444444333 1 2 38999999999986532 122333444444444 33 477
Q ss_pred hhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHh----hhc--CCCchhHHhhhHHhhhcccc--cCChHHHHHHHHHHH
Q psy10461 1219 DYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL----GVY--GFGCEDALTHLLNYVWPNIF--ETSPHLVQAFMDAVE 1290 (1359)
Q Consensus 1219 dYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl----~~~--glG~EdaliHlLnlvlPnI~--Etsp~Vi~~ileaLe 1290 (1359)
+|+..+.|.+.-+..|+.-.+-.-|..++..+.- .-+ +++...-+..+++..+..+. +++.+|+.+++.|++
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 7888899988888989876665444444444321 111 12322233344444444433 477889999999999
Q ss_pred HHHHhhch--HHHHHhHhhhhc
Q psy10461 1291 GLRVALGP--VRILQYVLQGLF 1310 (1359)
Q Consensus 1291 aLr~aLG~--~~ll~~vLpgLf 1310 (1359)
.+-..+|- ...+..+||-+.
T Consensus 596 q~i~~fgD~l~~eL~~~L~il~ 617 (1233)
T KOG1824|consen 596 QIIANFGDFLGNELPRTLPILL 617 (1233)
T ss_pred HHHHHHhhhhhhhhHHHHHHHH
Confidence 98888884 234555666554
No 36
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.71 E-value=1.7e-05 Score=95.30 Aligned_cols=425 Identities=16% Similarity=0.153 Sum_probs=253.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHh----------cCccchhh-----hHHHHHHHHHHHhhccCch----hHH--
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSN----------LGAADIDS-----RLEEQLIDGILYAFQEQTT----EDV-- 963 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~----------LGpe~l~~-----~L~~~Lld~LLplLqd~~~----eD~-- 963 (1359)
.......+|+.+..|..+|++-.+.|+.+ ++...... .-...++..||.+|..+.. +||
T Consensus 265 ~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~ 344 (858)
T COG5215 265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP 344 (858)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 34456789999999999999999887752 11000000 0112356667777754322 334
Q ss_pred --HHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh-hhhH--HhHHHHHHHHHHHHhc
Q psy10461 964 --VMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK-TCQE--EKLMGHLGVVLYEYLG 1038 (1359)
Q Consensus 964 --v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~-~~~e--~~lL~~Ll~iLle~L~ 1038 (1359)
.+..++..+++..|+.+ +..++.+++.-++.++=+-|.+|+-..+++ |. +|.. ..++...+|.+...+.
T Consensus 345 smaA~sCLqlfaq~~gd~i---~~pVl~FvEqni~~~~w~nreaavmAfGSv---m~gp~~~~lT~~V~qalp~i~n~m~ 418 (858)
T COG5215 345 SMAASSCLQLFAQLKGDKI---MRPVLGFVEQNIRSESWANREAAVMAFGSV---MHGPCEDCLTKIVPQALPGIENEMS 418 (858)
T ss_pred hhhHHHHHHHHHHHhhhHh---HHHHHHHHHHhccCchhhhHHHHHHHhhhh---hcCccHHHHHhhHHhhhHHHHHhcc
Confidence 33344555566666643 466999999999999999999988766554 53 3332 3556666777776665
Q ss_pred ccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHH-Hh--cCCCHHHHHHHHHHHHHHHhhC------CCchhhHH
Q psy10461 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP-IL--KNRHEKVQENCIDLVGRIADRG------PEYVSARE 1109 (1359)
Q Consensus 1039 De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~-LL--kDr~~rVR~AAielIg~IA~~g------~e~v~~kE 1109 (1359)
|..==|.....+++++++..+-+. ++| .. +|+..+. .+ --+++++--+|.+.+..++..- .+.+-.+-
T Consensus 419 D~~l~vk~ttAwc~g~iad~va~~-i~p-~~-Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~f 495 (858)
T COG5215 419 DSCLWVKSTTAWCFGAIADHVAMI-ISP-CG-HLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKF 495 (858)
T ss_pred cceeehhhHHHHHHHHHHHHHHHh-cCc-cc-cccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHH
Confidence 433233444556677777665322 333 22 3343333 22 2356666666666666655421 12222232
Q ss_pred HHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHh-----------hhc-------ccch-hHHHHH
Q psy10461 1110 WMRICFELLEL--LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNN-----------LKV-------QERQ-NRVCTT 1168 (1359)
Q Consensus 1110 ~mrIc~eLLel--LkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~-----------Lk~-------qe~~-VRv~ta 1168 (1359)
+..|...|+.. ++++..+.|-++..+||.+... .++.|.+.+.+. +.+ ++.. +..--.
T Consensus 496 Y~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~-~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqS 574 (858)
T COG5215 496 YLAILNALVKGTELALNESNLRVSLFSALGTLILI-CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQS 574 (858)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 55566665533 5677889999999999999876 455555443221 111 1111 111112
Q ss_pred HHHHHHh---hhcCcc------ccHHHHHHhcCCCCch-hHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChH
Q psy10461 1169 VAIAIVA---ETCSPF------TVLPALMNEYRVPELN-VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLV 1238 (1359)
Q Consensus 1169 ~AIg~LA---ea~gP~------~VLPaLLnlLkDpE~n-VR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~ 1238 (1359)
.-++.|+ ...++. .++-.|++.|...++. +---|..+++.+...+++.+..|+..++|.|.++++..|..
T Consensus 575 N~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~ 654 (858)
T COG5215 575 NYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRF 654 (858)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHH
Confidence 2223333 333442 3788888888877655 44589999999999999999999999999999999877888
Q ss_pred HHHHHHHHHHHHH--hhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchHH--HHHhHhhhhccccc
Q psy10461 1239 HRQTACATIKHMA--LGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLFHPAR 1314 (1359)
Q Consensus 1239 VRqtA~saIk~LA--l~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~--ll~~vLpgLfhpA~ 1314 (1359)
|-.+|...+..|| ++....-+.|++...|-.-+.+ -.+..++..+++++++-++.++|..+ .++.++--+ ..|+
T Consensus 655 v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss-~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~-qqas 732 (858)
T COG5215 655 VLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS-EATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF-QQAS 732 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-hhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHh
Confidence 8788888888876 2222222445444432222221 01556788889999999999999866 334333222 1221
Q ss_pred c------------chhhHHHHHHhhhhcccc-------chhhcccc
Q psy10461 1315 K------------VRDVYWKIYNSLYIGGQD-------ALISAYPR 1341 (1359)
Q Consensus 1315 k------------vrd~~WRvyn~~y~~~~~-------Alv~~~P~ 1341 (1359)
. -|+...-.-|..|||=.+ ++.||+-.
T Consensus 733 ~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~s 778 (858)
T COG5215 733 ELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVIS 778 (858)
T ss_pred ccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHH
Confidence 1 234444556777776543 45565543
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.68 E-value=1.5e-05 Score=98.41 Aligned_cols=305 Identities=20% Similarity=0.191 Sum_probs=188.4
Q ss_pred HHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHH
Q psy10461 951 ILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHL 1029 (1359)
Q Consensus 951 LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~L 1029 (1359)
++..|++...+. .+++.++..++.... ...-..++.+.+...+.++++.||.-++..|++++..-......-.=..+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~--~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS--PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 445566554444 677778888887664 22337899999999999999999999999998886533321110011346
Q ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhch-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCc
Q psy10461 1030 GVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDL-----LPRLTPILKNRHEKVQENCIDLVGRIADRGPEY 1104 (1359)
Q Consensus 1030 l~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~l-----LP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~ 1104 (1359)
++.+...|++.+.+|...++.+|..++..- +....+ +..|..++...+..||.-+.+++-.++....+.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 778888999999999998889888887532 112222 677777777778889988999999988755432
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccH
Q psy10461 1105 VSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL 1184 (1359)
Q Consensus 1105 v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VL 1184 (1359)
...-.--.+...++..|++..-=||..|++.|..||+. ++ -..+|. ...++
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~--~~-g~~yL~--------------------------~~gi~ 245 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET--PH-GLQYLE--------------------------QQGIF 245 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC--hh-HHHHHH--------------------------hCCHH
Confidence 21110000233334445554445777777777777762 21 111111 01244
Q ss_pred HHHHHhcCCCCchhH---H---HHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCC-
Q psy10461 1185 PALMNEYRVPELNVQ---N---GVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF- 1257 (1359)
Q Consensus 1185 PaLLnlLkDpE~nVR---~---~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~gl- 1257 (1359)
+.|.+.+.+.+-+-| . +.++..+.++..-.......++.++..|.+.+...|...+.+|..++..|+-...|.
T Consensus 246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~ 325 (503)
T PF10508_consen 246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ 325 (503)
T ss_pred HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence 444554443221111 1 222222333332111122233567777778888889999988888888886544431
Q ss_pred ----CchhHHhhhHHhhhcccccCChHHHHHHHHHHHHH
Q psy10461 1258 ----GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1258 ----G~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaL 1292 (1359)
....++.|.+..+...+.....+++.++++++..+
T Consensus 326 ~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 326 LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 23355667777777777677778998899988777
No 38
>KOG0915|consensus
Probab=98.59 E-value=2.7e-05 Score=101.77 Aligned_cols=346 Identities=16% Similarity=0.201 Sum_probs=213.0
Q ss_pred ccccccChHhHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhc----cCchhH-HHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLK-DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ----EQTTED-VVMLN 967 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LK-Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLq----d~~~eD-~v~lk 967 (1359)
.||..+|-.++|=++++..+ +-.|.-|+-|+-.++.|+.+-|.+ ++ +.+..|+|-|- |+.... ..+..
T Consensus 947 ~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~k-----l~-p~l~kLIPrLyRY~yDP~~~Vq~aM~s 1020 (1702)
T KOG0915|consen 947 NLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEK-----LE-PYLKKLIPRLYRYQYDPDKKVQDAMTS 1020 (1702)
T ss_pred HHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHh-----hh-hHHHHhhHHHhhhccCCcHHHHHHHHH
Confidence 69999999999999999888 559999999999999999877654 12 35566666542 444444 44555
Q ss_pred HHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHH-
Q psy10461 968 GFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLG- 1046 (1359)
Q Consensus 968 aLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~- 1046 (1359)
.-++++.-....+..|++.|+.=++.-+.+..=.||.++|-.+..|-.-=......+.+..+...++.-+.|..-.|+.
T Consensus 1021 IW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~a 1100 (1702)
T KOG0915|consen 1021 IWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREA 1100 (1702)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555545556799999999999999999999999999887776432111111234444444445444333333333
Q ss_pred --HHHHHHHHHHHHhCCCCCCCchhc----hHHHHHH--HhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHH-
Q psy10461 1047 --SILGALKAIVNVIGMTKMTPPIKD----LLPRLTP--ILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFEL- 1117 (1359)
Q Consensus 1047 --siL~AL~aIa~vlG~~~lsp~l~~----lLP~L~~--LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eL- 1117 (1359)
..+.++..++..++.-.-....++ +||.+.. ++ .+-..||+.++..+-.+++..+..+.++ ...+...|
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll 1178 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLL 1178 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHH
Confidence 244555555555432211112334 4555444 34 5667899999999999998543332222 11111111
Q ss_pred ----------HHHHHhhHHHHHHHHHHHHH--------------HHHHHhCc---hhHHHHHHHhhhcc-cchhHHHHHH
Q psy10461 1118 ----------LELLKAHKKAIRRATVNTFG--------------YIAKAIGP---HDVLATLLNNLKVQ-ERQNRVCTTV 1169 (1359)
Q Consensus 1118 ----------LelLkD~~~sVR~AAv~tLg--------------~IAk~~Gp---edVlp~LL~~Lk~q-e~~VRv~ta~ 1169 (1359)
+..|.-+-..+-..|++++- .....++. +++.|.+.+.++.. .=.-|+.++.
T Consensus 1179 ~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~ 1258 (1702)
T KOG0915|consen 1179 NAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCAS 1258 (1702)
T ss_pred HHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHH
Confidence 22222221223333333332 22222221 24556666666532 2234888888
Q ss_pred HHHHHhhhcC----cc--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh-hchhhHHhHHHHHHHHHhccChHHHHH
Q psy10461 1170 AIAIVAETCS----PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQT 1242 (1359)
Q Consensus 1170 AIg~LAea~g----P~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~-~~kdYL~~VlPlLedaL~D~D~~VRqt 1242 (1359)
.+..++.-|| |+ .++.+++-.++|-..+||..-..+++.++.+-.+ .+..|+..++- ..+.+.+..+ +.
T Consensus 1259 fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~---~~l~k~es~~-si 1334 (1702)
T KOG0915|consen 1259 FISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLA---DLLGKDESLK-SI 1334 (1702)
T ss_pred HHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH---HHhccCCCcc-ch
Confidence 8888888786 55 7999999999998899999999999999988765 34555543332 3444444333 66
Q ss_pred HHHHHHHHH
Q psy10461 1243 ACATIKHMA 1251 (1359)
Q Consensus 1243 A~saIk~LA 1251 (1359)
+|.++.+|+
T Consensus 1335 scatis~Ia 1343 (1702)
T KOG0915|consen 1335 SCATISNIA 1343 (1702)
T ss_pred hHHHHHHHH
Confidence 777777654
No 39
>KOG2552|consensus
Probab=98.52 E-value=3e-08 Score=113.99 Aligned_cols=60 Identities=50% Similarity=0.991 Sum_probs=55.5
Q ss_pred ccccccccccchhhhhhhccCCCCCCcccchhhhhhhhhHHHHHhhHHHhhhhhhhhccc
Q psy10461 827 CFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENG 886 (1359)
Q Consensus 827 ~~~~~~~lL~P~f~~lWi~~~sgNANFyyai~LV~~~lq~~k~~Dl~~A~~~~d~kl~~~ 886 (1359)
+...++.+|.|.+||+|+++|+||+||||+++++|+++|++.++|+.||++|+||.+.++
T Consensus 320 ~~~l~~~lL~pv~~hlWi~~gsgNaNF~fg~tl~y~~~qi~lv~d~~~a~lr~e~~l~~~ 379 (388)
T KOG2552|consen 320 CGYLGTSLLMPVMWHLWIVRGSGNANFYFGNTLVYACAQINLVVDSVFAMLRREYDLKYS 379 (388)
T ss_pred HHHHHHHHHHHHHHhhheecCCCccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455667889999999999999999999999999999999999999999999999998744
No 40
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.52 E-value=3.8e-06 Score=95.85 Aligned_cols=316 Identities=17% Similarity=0.166 Sum_probs=175.8
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHH-hc-Cc--cchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMS-NL-GA--ADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGK 978 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~-~L-Gp--e~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~ 978 (1359)
++.|...|-+.+-.....|+-.+.++.+ +- +| ..++..++++ |+-++.+.+.+- --+.=++..++.+-..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpR----fvefm~~~q~~mlqfEAaWalTNiaSGtt~ 148 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR----FVEFMDEIQRDMLQFEAAWALTNIASGTTQ 148 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHH----HHHHHHhcchhHHHHHHHHHHhhhccCccc
Confidence 4666666666666666667666666543 11 11 1122222233 333332222111 0111123344443332
Q ss_pred cccc-chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh--HHHHHHHHHHHHH
Q psy10461 979 RVKP-YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP--EVLGSILGALKAI 1055 (1359)
Q Consensus 979 ~ikP-yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p--EVl~siL~AL~aI 1055 (1359)
-.+- .=..-+|.+..+|.+.+..||.+|.+.++++|.....|.+.-+-...+-+++..|.+..+ ..+++.-+.|..+
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 2221 113457888999999999999999999999998766665422112223333333333333 4556666777777
Q ss_pred HHHhCCCCCCC---chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10461 1056 VNVIGMTKMTP---PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRAT 1132 (1359)
Q Consensus 1056 a~vlG~~~lsp---~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AA 1132 (1359)
+..- ...| .+.+.+|.+..++-.+.+.|-.-|.++|.-|.+-..+.+..---..+...|+++|......|.--|
T Consensus 229 cRGk---nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 229 CRGK---NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred hCCC---CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHH
Confidence 6532 1222 245677777777777778887777788887766322211110000011224455555444454444
Q ss_pred HHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy10461 1133 VNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 1212 (1359)
Q Consensus 1133 v~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~ 1212 (1359)
...+|.|.. |.++--..++ + -.+|++|..+|..|.-++|.-+|++++.|-.
T Consensus 306 lR~vGNIVT--G~D~QTqviI----------~----------------~G~L~a~~~lLs~~ke~irKEaCWTiSNITA- 356 (526)
T COG5064 306 LRSVGNIVT--GSDDQTQVII----------N----------------CGALKAFRSLLSSPKENIRKEACWTISNITA- 356 (526)
T ss_pred HHhhcCeee--cCccceehhe----------e----------------cccHHHHHHHhcChhhhhhhhhheeeccccc-
Confidence 444444433 2111000011 0 1468888889999999999999999976532
Q ss_pred hhh--hchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCC
Q psy10461 1213 IGE--MGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF 1257 (1359)
Q Consensus 1213 IG~--~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~gl 1257 (1359)
|. ..+..+ .-++|.|.+++.-.+-..|.-||.+|....-++.+.
T Consensus 357 -Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~ 403 (526)
T COG5064 357 -GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNR 403 (526)
T ss_pred -CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 32 122222 357888888888888888888999998876554443
No 41
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.52 E-value=2.6e-06 Score=93.66 Aligned_cols=183 Identities=16% Similarity=0.224 Sum_probs=124.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHH---HHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHh
Q psy10461 911 DLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLI---DGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQ 986 (1359)
Q Consensus 911 ~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Ll---d~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~q 986 (1359)
.-.+.+|..|..|+..|..++..-.+....+.+...+. ..+...+.+..+-. ..++.++..++..++..+.+|+..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 34789999999999999999985522222222222222 33444444333323 567788999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHH-HHHHHHHhcccChHHHHHHHHHHHHHHHHhC--CCC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHL-GVVLYEYLGEEYPEVLGSILGALKAIVNVIG--MTK 1063 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~L-l~iLle~L~De~pEVl~siL~AL~aIa~vlG--~~~ 1063 (1359)
++|.|+.++.|....+|.+|..+|..++.... ....+ ...+...+.+..+.++..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 99999999999999999999999999987654 11224 5666677788889999999898988888877 233
Q ss_pred CCCc--hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1064 MTPP--IKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1064 lsp~--l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
+... +..+++.+...+.|.++.||.++-..+..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3332 36688888889999999999999999998865
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.46 E-value=8.6e-05 Score=91.85 Aligned_cols=363 Identities=18% Similarity=0.215 Sum_probs=215.7
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc-cchH
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK-PYLP 985 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik-Pyl~ 985 (1359)
|+..|.+.+...=..+++.|.++...+.+..+ .+.+...|...+.++.... ..+++.++.++..-...+. -.-+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l----~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL----LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 55556655554447777888888887777643 3356666666677766655 5667777777665433221 1126
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHH-HHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCC
Q psy10461 986 QICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGH-LGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 1064 (1359)
Q Consensus 986 qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~-Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~l 1064 (1359)
.+++.|...+.|++..|...|+.+|..|+..-..+ +.++.. +...|...+...+..++..++..+-.++..-. + .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~--~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~-~-~ 194 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL--EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP-E-A 194 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH--HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH-H-H
Confidence 78999999999999999999999999998643211 122111 13334444444344455455555555543310 0 0
Q ss_pred CCch--hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--CCCchhhHHHHHHHHHHHHHHHhhH-----HHHH-HHHHH
Q psy10461 1065 TPPI--KDLLPRLTPILKNRHEKVQENCIDLVGRIADR--GPEYVSAREWMRICFELLELLKAHK-----KAIR-RATVN 1134 (1359)
Q Consensus 1065 sp~l--~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~--g~e~v~~kE~mrIc~eLLelLkD~~-----~sVR-~AAv~ 1134 (1359)
.... ..+++.+...++++.--||.+|++++..+|.. |..|+.... +...+..++.+.. ..+. -..+.
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g---i~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG---IFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC---HHHHHHHHHhccccCCcccchhhhhHHH
Confidence 0111 23888888888898888999999999999982 333333322 3334445554431 1222 12335
Q ss_pred HHHHHHHHhCchhH-------HHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc------------ccHHHHHHhcCCCC
Q psy10461 1135 TFGYIAKAIGPHDV-------LATLLNNLKVQERQNRVCTTVAIAIVAETCSPF------------TVLPALMNEYRVPE 1195 (1359)
Q Consensus 1135 tLg~IAk~~GpedV-------lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~------------~VLPaLLnlLkDpE 1195 (1359)
-+|.++.. .|..+ +..|.+.+..++...+.++..++|.||...... .++-.+....+...
T Consensus 272 f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 272 FFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 66667765 44433 233444455667778999899999998554211 35555555566777
Q ss_pred chhHHHHHHHHHHHHHHhhhhchhhHHh-------------HHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhH
Q psy10461 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYA-------------VTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA 1262 (1359)
Q Consensus 1196 ~nVR~~VlkaLs~Iae~IG~~~kdYL~~-------------VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Eda 1262 (1359)
.++|.+++.+|+.|+..-.....+-+.. ..-++.+++...-.++|.++..++..|+- +.-|....
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~--~~Wg~~~i 428 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA--QPWGQREI 428 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc--CHHHHHHH
Confidence 7899999999988875443311111111 11145556655568899988888888862 22222221
Q ss_pred Hh--hhHHhhhcccccCChHHHHH
Q psy10461 1263 LT--HLLNYVWPNIFETSPHLVQA 1284 (1359)
Q Consensus 1263 li--HlLnlvlPnI~Etsp~Vi~~ 1284 (1359)
.. -++++++..-.|++.+....
T Consensus 429 ~~~~gfie~lldr~~E~~K~~ke~ 452 (503)
T PF10508_consen 429 CSSPGFIEYLLDRSTETTKEGKEA 452 (503)
T ss_pred HhCccHHhhhcCCCCCCCHHHHHH
Confidence 11 24555555444555554433
No 43
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.43 E-value=3.5e-05 Score=92.77 Aligned_cols=209 Identities=14% Similarity=0.088 Sum_probs=148.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 1066 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp 1066 (1359)
.+..+...+.|.++.||.++++.++.+... .....|...|++..|.|+.+++.+++...
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-----------~a~~~L~~~L~~~~p~vR~aal~al~~r~---------- 145 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGR-----------QAEPWLEPLLAASEPPGRAIGLAALGAHR---------- 145 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCch-----------HHHHHHHHHhcCCChHHHHHHHHHHHhhc----------
Confidence 367778888999999999999999876421 24556777788889999888776665511
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1067 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1067 ~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
.+-.+.+..+++|.++.||.+++..+|.+.... .+..|...+.|++..||++|+..++.++. .
T Consensus 146 --~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-----------a~~~L~~al~d~~~~VR~aA~~al~~lG~----~ 208 (410)
T TIGR02270 146 --HDPGPALEAALTHEDALVRAAALRALGELPRRL-----------SESTLRLYLRDSDPEVRFAALEAGLLAGS----R 208 (410)
T ss_pred --cChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC----H
Confidence 133567888889999999999999999986521 22334567899999999999999977743 3
Q ss_pred hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHH
Q psy10461 1147 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP 1226 (1359)
Q Consensus 1147 dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlP 1226 (1359)
.....|+..........+...+..++.. +....+..|..+++|+. ||..++.+++.+ |. ...+|
T Consensus 209 ~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l----g~------p~av~ 272 (410)
T TIGR02270 209 LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGPDAQAWLRELLQAAA--TRREALRAVGLV----GD------VEAAP 272 (410)
T ss_pred hHHHHHHHHHhccCccHHHHHHHHHHhC----CchhHHHHHHHHhcChh--hHHHHHHHHHHc----CC------cchHH
Confidence 4444455433333433333322233222 55579999999999976 899999997654 32 35566
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1227 LLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1227 lLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
.|..++.|.. ++..|..+++.|.
T Consensus 273 ~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 273 WCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHhcCcH--HHHHHHHHHHHhh
Confidence 6666776554 8888888888873
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.33 E-value=0.00071 Score=81.82 Aligned_cols=338 Identities=17% Similarity=0.256 Sum_probs=202.7
Q ss_pred HHHhhhcCCCCH---HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhccccc
Q psy10461 906 NRVVDDLKDENE---QYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 906 ~~Ll~~LKDes~---~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~i 980 (1359)
+.++..|-|.+. .-....++.|..++.. ..+-+.+..++++.+--..+.....+ +.++.++..+++......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~---~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS---PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 345556665544 4566666777766652 11222333344444433333222222 677777777777664433
Q ss_pred -----ccchHh-HHHHHHHhhcCC-----C--HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHH-----Hhc-ccC
Q psy10461 981 -----KPYLPQ-ICGTILWRLNNK-----S--AKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYE-----YLG-EEY 1041 (1359)
Q Consensus 981 -----kPyl~q-ILpiIl~LL~De-----s--~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle-----~L~-De~ 1041 (1359)
.-|.+. +++.+....... + ..+=..++.++..+...+........+..+...++. .+. +.+
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~ 158 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSS 158 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccc
Confidence 344443 666665554332 2 344455555555555555433334556666665551 010 011
Q ss_pred --hHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHH
Q psy10461 1042 --PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELL 1118 (1359)
Q Consensus 1042 --pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL-kDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLL 1118 (1359)
.+.-...+..+..+...+..+..-|...+++..++.++ ...++..|.++.+++..++.+.... ..+..+...+.
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~---~~l~~~l~~~~ 235 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD---DDLDEFLDSLL 235 (415)
T ss_pred ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh---hhHHHHHHHHH
Confidence 01122233444455555543322334566888888864 4556889999999999998863211 11111222222
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHh---C-c--hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhc--------Cc---
Q psy10461 1119 ELL-KAHKKAIRRATVNTFGYIAKAI---G-P--HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC--------SP--- 1180 (1359)
Q Consensus 1119 elL-kD~~~sVR~AAv~tLg~IAk~~---G-p--edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~--------gP--- 1180 (1359)
.-+ .......|..++..+.-|++++ | + ..++..|+..+.+ ..+...++.+|+.+..-. +.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vk 313 (415)
T PF12460_consen 236 QSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVK 313 (415)
T ss_pred hhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhh
Confidence 222 2335567888888888777754 2 2 2556667776655 446778889999875331 11
Q ss_pred -------c-ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh-hchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1181 -------F-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1181 -------~-~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~-~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
| .++|.|++.++.....+|.+-+.+|+.+.+.+.. ....++..++|+|.++|.-.|.+++..+..++..+.
T Consensus 314 lLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 314 LLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred hHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1 7999999999988877999999999999999975 356678899999999998888888887777777764
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.31 E-value=3.2e-05 Score=85.10 Aligned_cols=182 Identities=15% Similarity=0.246 Sum_probs=122.4
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--CCchhhH-HHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Q psy10461 1070 DLLPRLTPILKNRHEKVQENCIDLVGRIADRG--PEYVSAR-EWM-RICFELLELLKAHKKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1070 ~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g--~e~v~~k-E~m-rIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
+++..+-..-.+.+|..|..++..|..+...+ ..+.+.. +.+ .+...+...+.|....|-..|+..+..|+...|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34444433446899999999999999998865 2222211 111 1223344557777888999999999999999887
Q ss_pred h------hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-cccc-HHHHHHhcCCCCchhHHHHHHHHHHHHHHhh---
Q psy10461 1146 H------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-PFTV-LPALMNEYRVPELNVQNGVLKALSFLFEYIG--- 1214 (1359)
Q Consensus 1146 e------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-P~~V-LPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG--- 1214 (1359)
. .+++.|+..+.+....+|..+..++..+.+.|+ +..+ ++.+...+++..+.||..++..|..+.+..+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3 456667777777666789999999999999998 4445 8888889999999999999999999988888
Q ss_pred hhchh--hHHhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1215 EMGKD--YIYAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1215 ~~~kd--YL~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
..... .+..+.+.+..++.|.+..||+.|-.++..+.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 22222 34679999999999999999999988888875
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.27 E-value=0.00021 Score=83.23 Aligned_cols=273 Identities=18% Similarity=0.198 Sum_probs=174.8
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
...+..++..+.|+++.+|..|+..+.. +|.. ..+..+..++.+....+ +.++.++|. ++
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~----~~~~--------~av~~l~~~l~d~~~~vr~~a~~aLg~----~~--- 102 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGE----LGSE--------EAVPLLRELLSDEDPRVRDAAADALGE----LG--- 102 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhh----hchH--------HHHHHHHHHhcCCCHHHHHHHHHHHHc----cC---
Confidence 3568888999999999999999998654 4434 45566666676665544 444432222 22
Q ss_pred ccchHhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh------------HHHHH
Q psy10461 981 KPYLPQICGTILWRLN-NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP------------EVLGS 1047 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~-Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p------------EVl~s 1047 (1359)
..+.++.+..++. |.+..||..|+..++.+...- .+..+++.+.+... .++.+
T Consensus 103 ---~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 103 ---DPEAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred ---ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 1455566666666 899999999999999986432 24445566655442 23333
Q ss_pred HHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHH
Q psy10461 1048 ILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA 1127 (1359)
Q Consensus 1048 iL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~s 1127 (1359)
++.++..+ | .....+.+.+.+.+....||.+++..++.+.... . .+...+...+.|....
T Consensus 169 a~~~l~~~----~-------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~---~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 169 AAEALGEL----G-------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------V---EAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHc----C-------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------h---hHHHHHHHHhcCCCHH
Confidence 33333332 2 2256777788888989999999999999987633 1 1223446778888999
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHH
Q psy10461 1128 IRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALS 1207 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs 1207 (1359)
||..++..+|.+ |.+.....+...++..+..+|.....+.+ .++...-.+.++..+.|....++...+.++.
T Consensus 229 vr~~~~~~l~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 300 (335)
T COG1413 229 VRKAALLALGEI----GDEEAVDALAKALEDEDVILALLAAAALG----ALDLAEAALPLLLLLIDEANAVRLEAALALG 300 (335)
T ss_pred HHHHHHHHhccc----CcchhHHHHHHHHhccchHHHHHHHHHhc----ccCchhhHHHHHHHhhcchhhHHHHHHHHHH
Confidence 999999998886 44455666666666666666655444443 3333345666788888888888888887765
Q ss_pred HHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHH
Q psy10461 1208 FLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 1245 (1359)
Q Consensus 1208 ~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~s 1245 (1359)
.+..... ...+.....+.+..+|..+..
T Consensus 301 ~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~ 328 (335)
T COG1413 301 QIGQEKA----------VAALLLALEDGDADVRKAALI 328 (335)
T ss_pred hhcccch----------HHHHHHHhcCCchhhHHHHHH
Confidence 5433222 222222445566666665443
No 47
>KOG1240|consensus
Probab=98.25 E-value=0.00015 Score=93.33 Aligned_cols=267 Identities=15% Similarity=0.154 Sum_probs=178.7
Q ss_pred ChHhHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc
Q psy10461 900 GASEIINRVVDDLKD-ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG 977 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKD-es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg 977 (1359)
|+--++..|..-+++ ....-|..|++-|..++..+..+..-+ +++..++-+++|+...+ ..++..+..++...-
T Consensus 419 ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 419 GAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred ceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 333345555554443 255778899999999888777763333 56666667778877666 344444444443332
Q ss_pred cc----cccchHhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhhhhhH----------------------------Hh
Q psy10461 978 KR----VKPYLPQICGTILWRLNN-KSAKVRQQAADLISRIAVVMKTCQE----------------------------EK 1024 (1359)
Q Consensus 978 ~~----ikPyl~qILpiIl~LL~D-es~~VR~aAAe~Is~LA~vl~~~~e----------------------------~~ 1024 (1359)
+. ..-|.+.|+|-|..+++| ....||-+-|.+|+.||...-...+ .+
T Consensus 495 ~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 495 DIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQA 574 (1431)
T ss_pred CCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHH
Confidence 22 246778899999999999 8999999999999999985432111 01
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCCC
Q psy10461 1025 LMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD-RGPE 1103 (1359)
Q Consensus 1025 lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~e 1103 (1359)
+...+--...+.|.|..|-|..+.++++..++.-+|.++- ..-+|+.|.-.|+|+.|+.|-+..+.|.-++- .|..
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r 651 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR 651 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee
Confidence 2222223334456776778888999999999999997643 44688888889999999999999988887654 2322
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhh
Q psy10461 1104 YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP------HDVLATLLNNLKVQERQNRVCTTVAIAIVAET 1177 (1359)
Q Consensus 1104 ~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea 1177 (1359)
.+.+- +..-+..-|.|.+..|=..|..+|..|.+. |- -+++..+++.|-+.+.++|..+..-|..++..
T Consensus 652 s~sey----llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 652 SVSEY----LLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eHHHH----HHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 22222 222234457888888877777777777764 22 14555566777777888999877777666655
Q ss_pred c
Q psy10461 1178 C 1178 (1359)
Q Consensus 1178 ~ 1178 (1359)
+
T Consensus 727 l 727 (1431)
T KOG1240|consen 727 L 727 (1431)
T ss_pred h
Confidence 4
No 48
>KOG2259|consensus
Probab=98.13 E-value=0.00016 Score=88.55 Aligned_cols=213 Identities=13% Similarity=0.159 Sum_probs=155.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh-CCCCCC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI-GMTKMT 1065 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl-G~~~ls 1065 (1359)
++.-+..+..|.+..||.+|++.+-.|++.++- -..+..-..+.|.|+|.+|+++++.++.-..+.. +.....
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccc------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 334477889999999999999999999986541 1123344556689999999999888888877765 211111
Q ss_pred Cc----hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhh---HHHHH--------------------------
Q psy10461 1066 PP----IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSA---REWMR-------------------------- 1112 (1359)
Q Consensus 1066 p~----l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~---kE~mr-------------------------- 1112 (1359)
.. ..+.+..+...+.|.+|.||-.|+++||.+...+.+++.+ +.+|.
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 11 1234444555678999999999999999987655444322 00111
Q ss_pred ---------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhhcccchhHHHHHH
Q psy10461 1113 ---------------------ICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTTV 1169 (1359)
Q Consensus 1113 ---------------------Ic~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk~qe~~VRv~ta~ 1169 (1359)
.|..++--|.|.-..||++|+..|+.+|..-+. ...+..|+++++....-||+-+..
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 244445558888899999999999999986332 356777888888766679999999
Q ss_pred HHHHHhhhcCc-cccHHHHHHhcCCCCchhHHHHHHH
Q psy10461 1170 AIAIVAETCSP-FTVLPALMNEYRVPELNVQNGVLKA 1205 (1359)
Q Consensus 1170 AIg~LAea~gP-~~VLPaLLnlLkDpE~nVR~~Vlka 1205 (1359)
++-.|+..+.- ++-|+.++..|.|-..+||.+.-.-
T Consensus 433 aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~el 469 (823)
T KOG2259|consen 433 ALTMISVHLAIREEQLRQILESLEDRSVDVREALREL 469 (823)
T ss_pred HHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999988754 3899999999999999999765443
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.05 E-value=0.00031 Score=81.71 Aligned_cols=208 Identities=21% Similarity=0.287 Sum_probs=150.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCC
Q psy10461 986 QICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMT 1065 (1359)
Q Consensus 986 qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ls 1065 (1359)
.....+...+.|++..||..|+..++.+... ..++.+...|.+..+.++..+..+|+.+.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 5677788889999999999999997666532 14666778888888888887766444432
Q ss_pred CchhchHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhH------------HHHHHHH
Q psy10461 1066 PPIKDLLPRLTPILK-NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK------------KAIRRAT 1132 (1359)
Q Consensus 1066 p~l~~lLP~L~~LLk-Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~------------~sVR~AA 1132 (1359)
....+|.++.+++ |.++.||..++..++.+...- .+..+++.+.+.. ..+|.++
T Consensus 103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 2367888888887 799999999999999986521 2334455555533 3689999
Q ss_pred HHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy10461 1133 VNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 1212 (1359)
Q Consensus 1133 v~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~ 1212 (1359)
+..++.+.. ....+.+++.+...+..+|..++.+++.+.... ..+.+.|...+.|+..+||..++.+|+.+
T Consensus 170 ~~~l~~~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--~~~~~~l~~~~~~~~~~vr~~~~~~l~~~--- 240 (335)
T COG1413 170 AEALGELGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--VEAADLLVKALSDESLEVRKAALLALGEI--- 240 (335)
T ss_pred HHHHHHcCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--hhHHHHHHHHhcCCCHHHHHHHHHHhccc---
Confidence 998888754 455666777777777788999888888876532 25778899999999999999999887543
Q ss_pred hhhhchhhHHhHHHHHHHHHhccChHHHHH
Q psy10461 1213 IGEMGKDYIYAVTPLLEDALMDRDLVHRQT 1242 (1359)
Q Consensus 1213 IG~~~kdYL~~VlPlLedaL~D~D~~VRqt 1242 (1359)
|. ....+.+...+.+.+..++..
T Consensus 241 -~~------~~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 241 -GD------EEAVDALAKALEDEDVILALL 263 (335)
T ss_pred -Cc------chhHHHHHHHHhccchHHHHH
Confidence 21 133444555666777666643
No 50
>KOG4224|consensus
Probab=98.00 E-value=0.00038 Score=80.60 Aligned_cols=339 Identities=14% Similarity=0.095 Sum_probs=204.7
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc-
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK- 981 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik- 981 (1359)
....++..+.+.+..+...|-..++.++-+++-..+-..+- =++-++-.++....+. ...++++..++..-....+
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~--Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLL--GLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEecc--ChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 34556667888899999999999998887777653221100 0111222222222233 4455566666655333333
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh-C
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI-G 1060 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl-G 1060 (1359)
-+.-.+.| +..+.+-++-.||..|...+.++...-+.... -.-..-+++|.+.++..+++|.--|+.+++.|+.-- .
T Consensus 164 A~sGaL~p-ltrLakskdirvqrnatgaLlnmThs~EnRr~-LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 164 ARSGALEP-LTRLAKSKDIRVQRNATGALLNMTHSRENRRV-LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred hhccchhh-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhh-hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 22333444 44588889999999999999999765542111 111224678888888888999888888888774321 0
Q ss_pred CCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10461 1061 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMR--ICFELLELLKAHKKAIRRATVNTFGY 1138 (1359)
Q Consensus 1061 ~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mr--Ic~eLLelLkD~~~sVR~AAv~tLg~ 1138 (1359)
-+.+.+.-..++|.++.++.+.+++|+-.+..+++.++..-. |.-+ +.+ -..-++++|++.--..=.+.+..+..
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~e--iv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQRE--IVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhH--HHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 011222223699999999999999999999999999986321 1111 100 11123444444322211233333333
Q ss_pred HHHHhCc------hhHHHHHHHhhhcccch-hHHHHHHHHHHHhhhcC-------ccccHHHHHHhcCCCCchhHHHHHH
Q psy10461 1139 IAKAIGP------HDVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLK 1204 (1359)
Q Consensus 1139 IAk~~Gp------edVlp~LL~~Lk~qe~~-VRv~ta~AIg~LAea~g-------P~~VLPaLLnlLkDpE~nVR~~Vlk 1204 (1359)
|+-.-+. +-++..|+..|+..++. ....+...+-.+|-... ....+|.+..++.|.--.||..+..
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 3332222 23555677777755443 34444444444443221 1268999999999999999999988
Q ss_pred HHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1205 ALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1205 aLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
+++.++- ....+.|+ .-|+|.|...+.+.+..||-.|++++..++
T Consensus 399 c~a~Lal--~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 399 CIAQLAL--NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHHHh--ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 8877653 23445555 467887777888889999977777877765
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.97 E-value=0.00075 Score=81.53 Aligned_cols=240 Identities=16% Similarity=0.078 Sum_probs=159.1
Q ss_pred HhHHHHHhhhc-CCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDL-KDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~L-KDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
+..+..++..| .|++..+|..++..+... ... ..++.++..+.+...+. ..+ ++.||..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~----~~~--------~~~~~L~~~L~d~~~~vr~aa-------a~ALg~i 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ----EDA--------LDLRSVLAVLQAGPEGLCAGI-------QAALGWL 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc----CCh--------HHHHHHHHHhcCCCHHHHHHH-------HHHHhcC
Confidence 56688888888 588888888777665421 111 23666777777654444 233 3334432
Q ss_pred cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
- ..+..+.|..+++++++.||..+...++..... -...+...|++..+.|+...+.+++.+...
T Consensus 114 ~---~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 114 G---GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD------------PGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred C---chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC------------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 1 256778888899999999999888777763211 234566667888999999888888776432
Q ss_pred CCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10461 1060 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 1139 (1359)
Q Consensus 1060 G~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~I 1139 (1359)
+.+|.|...+.|.++.||.+++..++.++.... + ..| +.+..+...-.+..+...+..+
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A-------~-~~l---~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLA-------W-GVC---RRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhH-------H-HHH---HHHHhccCccHHHHHHHHHHhC
Confidence 567778888999999999999999977754111 1 122 3334444334444444444443
Q ss_pred HHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHH
Q psy10461 1140 AKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209 (1359)
Q Consensus 1140 Ak~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~I 1209 (1359)
|...++..|...++.. .+|..++.++|.+.. -..++.|+..+.|+. ++-.+-.+++.|
T Consensus 237 ----~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~----p~av~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 237 ----GGPDAQAWLRELLQAA--ATRREALRAVGLVGD----VEAAPWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred ----CchhHHHHHHHHhcCh--hhHHHHHHHHHHcCC----cchHHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 5556777777666543 389988888887654 358899999998875 677777776554
No 52
>KOG1060|consensus
Probab=97.94 E-value=0.0041 Score=77.97 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=79.1
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchh
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD 1147 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gped 1147 (1359)
.+-+|...-+++..+++.|..++++++=.+|.... .-.+...|+-+|..+ ..++.-...++..|+.. .+.=
T Consensus 285 ~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~-~~~l 355 (968)
T KOG1060|consen 285 LKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIAKALVRLLRSN-REVQYVVLQNIATISIK-RPTL 355 (968)
T ss_pred HHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhc-chhh
Confidence 44456666667777888888888877777765321 122333444444432 33444444444444443 1212
Q ss_pred HHHHHHHhh-hcccc-hhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHH
Q psy10461 1148 VLATLLNNL-KVQER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 1225 (1359)
Q Consensus 1148 Vlp~LL~~L-k~qe~-~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~Vl 1225 (1359)
+.|++-+.+ +..+. ++..--..-+..|+.+-....+|+-|..=.+++...+-..++++|+-++..++... .+.+
T Consensus 356 F~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----~tCL 431 (968)
T KOG1060|consen 356 FEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT----DTCL 431 (968)
T ss_pred hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh----hHHH
Confidence 222221110 01111 11110011112222222222334433333456666566677777777777776532 3555
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1226 PLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1226 PlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
-.|..++...|..|-..+..+|+.|
T Consensus 432 ~gLv~Llsshde~Vv~eaV~vIk~L 456 (968)
T KOG1060|consen 432 NGLVQLLSSHDELVVAEAVVVIKRL 456 (968)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHH
Confidence 5555566665554444344455443
No 53
>KOG1060|consensus
Probab=97.93 E-value=0.008 Score=75.50 Aligned_cols=282 Identities=15% Similarity=0.134 Sum_probs=150.8
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHh
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQ 986 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~q 986 (1359)
|...|.........-||+.|-.++. -|.. .+ .++...+--....+.|. +.+.--+-..++.-++.. --
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA-~G~d--vS----~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA----LL 108 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIA-KGKD--VS----LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA----LL 108 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHh-cCCc--HH----HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce----ee
Confidence 3344445555556666665554443 2222 11 23333333333344444 222112334455444421 01
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 1066 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp 1066 (1359)
-+.++...|+|+++.+|-.|...++.|=--+ ..+..+..+.+...|-.+-|++.+..|+-.++.. +.+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~-------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e---- 176 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVPM-------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPE---- 176 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-Chh----
Confidence 2567888999999999999988888873111 1112233344555666777888777777777753 211
Q ss_pred chh-chHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchh--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy10461 1067 PIK-DLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1067 ~l~-~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~--~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
.+ +++--|-.+|.|+++.|.-+|+.++..++. +.++ .+.+-++|. +|.|-...=+...++.|-.-|+.-
T Consensus 177 -~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIHknyrklC~----ll~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 177 -QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIHKNYRKLCR----LLPDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred -hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhhHHHHHHHh----hccchhhhhHHHHHHHHHHHHHhc
Confidence 22 344444447889999999888888887643 3222 123555663 222211111122334443333321
Q ss_pred ----------------------------Cc---hhHHHHHHHh----hhcccchhHHHHHHHHHHHhhhcCccccHHHHH
Q psy10461 1144 ----------------------------GP---HDVLATLLNN----LKVQERQNRVCTTVAIAIVAETCSPFTVLPALM 1188 (1359)
Q Consensus 1144 ----------------------------Gp---edVlp~LL~~----Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLL 1188 (1359)
+| +.-+.-||.. |.+.+..|=++++.++=.+|.-..-..+.-+|+
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLv 328 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALV 328 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHH
Confidence 11 1111123333 334444555566666666664433336788899
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH
Q psy10461 1189 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI 1221 (1359)
Q Consensus 1189 nlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL 1221 (1359)
++|+.+ +.||..|+.++.+|+..-..++..|+
T Consensus 329 rLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~l 360 (968)
T KOG1060|consen 329 RLLRSN-REVQYVVLQNIATISIKRPTLFEPHL 360 (968)
T ss_pred HHHhcC-CcchhhhHHHHHHHHhcchhhhhhhh
Confidence 988864 56899999999888877666666655
No 54
>KOG2259|consensus
Probab=97.92 E-value=0.0021 Score=79.17 Aligned_cols=236 Identities=15% Similarity=0.148 Sum_probs=143.5
Q ss_pred HHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchh--h---
Q psy10461 1033 LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVS--A--- 1107 (1359)
Q Consensus 1033 Lle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~--~--- 1107 (1359)
|..+..++++.|+..++.+|=++.+.+ + + .+..+.+....++|....||.+|++++-..+..++.-.+ .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--k-L---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--K-L---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--c-c---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 334456788889999889988888833 2 3 345677777889999999999999999999997731111 1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHhhhcccchhHHHHHHHH--HHHhhh---
Q psy10461 1108 REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL-----LNNLKVQERQNRVCTTVAI--AIVAET--- 1177 (1359)
Q Consensus 1108 kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~L-----L~~Lk~qe~~VRv~ta~AI--g~LAea--- 1177 (1359)
+-.-.....+...+.|....||-.|.+.||.+... .++++... +.+++ |.-++.-= ...+..
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v--See~i~QTLdKKlms~lR------Rkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV--SEEIIQQTLDKKLMSRLR------RKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh--HHHHHHHHHHHHHhhhhh------hhhhcccchHHHHhcCCcc
Confidence 10111122233678899999999999999988765 34444433 33222 11111000 000000
Q ss_pred ----c----------------CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccCh
Q psy10461 1178 ----C----------------SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 1237 (1359)
Q Consensus 1178 ----~----------------gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~ 1237 (1359)
. =|.....+|+.-|.|.-.+||.+++-++..++..-. .+-..-+-.|.|.++|+..
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----~FA~~aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----GFAVRALDFLVDMFNDEIE 424 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHhccHHH
Confidence 0 001223456777777777888877777766554322 1223455567777778888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHH
Q psy10461 1238 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1238 ~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaL 1292 (1359)
+||-.|.-++.+|+-+... .| ..|+.++.-|.|.+++++.++-+-|+..
T Consensus 425 ~VRL~ai~aL~~Is~~l~i--~e----eql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHLAI--RE----EQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHHHhee--cH----HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8887677777777644221 22 3456666677777777777666655443
No 55
>KOG1943|consensus
Probab=97.90 E-value=0.009 Score=77.29 Aligned_cols=259 Identities=16% Similarity=0.124 Sum_probs=151.7
Q ss_pred hHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-hH-HHHHHHHHHHHhhccc
Q psy10461 901 ASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-ED-VVMLNGFGTIVNQLGK 978 (1359)
Q Consensus 901 ~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD-~v~lkaLg~Lae~Lg~ 978 (1359)
.|++++.|+..++|.+..||..|++.+.+++..++.+ |....+..++-+|.-.++ .. |-++-+|+.++... -
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-l 412 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-L 412 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-C
Confidence 4678999999999999999999999999999999865 333455555554443332 22 45555666665432 1
Q ss_pred ccccchHhHHHHHHHhhcC--------CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH-hcccChHHHHHHH
Q psy10461 979 RVKPYLPQICGTILWRLNN--------KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEY-LGEEYPEVLGSIL 1049 (1359)
Q Consensus 979 ~ikPyl~qILpiIl~LL~D--------es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~-L~De~pEVl~siL 1049 (1359)
.+-.-+..++|+|+..+.= ...+||++|+=.+-.++..-.+..-..++.++...|+.. +=|-.-..++++-
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 2223467888888877652 367899999998888887665432234555565555433 2121112344443
Q ss_pred HHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHH-HhhCCCchhhHHHHHHHHHHHHH-HHhhHHH
Q psy10461 1050 GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRI-ADRGPEYVSAREWMRICFELLEL-LKAHKKA 1127 (1359)
Q Consensus 1050 ~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~I-A~~g~e~v~~kE~mrIc~eLLel-LkD~~~s 1127 (1359)
.|| -+.+|-..--|.--+++..+- .-.-.-|.+|...+... |.. ..|.. ++...++.. +.-+...
T Consensus 493 AAl---qE~VGR~~n~p~Gi~Lis~~d----y~sV~~rsNcy~~l~~~ia~~-~~y~~-----~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 493 AAL---QENVGRQGNFPHGISLISTID----YFSVTNRSNCYLDLCVSIAEF-SGYRE-----PVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHH---HHHhccCCCCCCchhhhhhcc----hhhhhhhhhHHHHHhHHHHhh-hhHHH-----HHHHHHHhcccccccHH
Confidence 344 344443211221112222221 11112355555555542 221 11110 011111111 3346778
Q ss_pred HHHHHHHHHHHHHHHhCc---hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhc
Q psy10461 1128 IRRATVNTFGYIAKAIGP---HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC 1178 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~Gp---edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~ 1178 (1359)
||+.++.+|-.|+..-.. +.+++.|++..-+.+-..|.....|.|.+.-++
T Consensus 560 irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 999999999998886433 356777777766666677888888888876554
No 56
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00023 Score=81.81 Aligned_cols=349 Identities=16% Similarity=0.138 Sum_probs=201.6
Q ss_pred HhHHHHHhhhc-CCCCHHHHHHHHHHHHHHHHhcCcc---chhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhc
Q psy10461 902 SEIINRVVDDL-KDENEQYRKMVMESIEKTMSNLGAA---DIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQL 976 (1359)
Q Consensus 902 ~eiI~~Ll~~L-KDes~~VR~~Aa~~L~~Ia~~LGpe---~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~L 976 (1359)
.-++++++.++ .++..-..-.|+=+|+.|++--..+ .++. -.+..|+.+|.+.+.++ +.++=++|.++.-.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~----~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS 188 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA----GAVPLFIQLLSSTEDDVREQAVWALGNIAGDS 188 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC----CchHHHHHHHcCchHHHHHHHHHHhccccCCc
Confidence 44689999988 5556666778888999888632221 1122 12344556666655555 55555666655322
Q ss_pred ccccccchHh--HHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy10461 977 GKRVKPYLPQ--ICGTILWRLNNKSA--KVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGAL 1052 (1359)
Q Consensus 977 g~~ikPyl~q--ILpiIl~LL~Des~--~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL 1052 (1359)
. ..+.|+-+ .+..++.++..... ..-+.|.+.+++++.--.+......+.+.+++|...+-..++|++.-+|+|+
T Consensus 189 ~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 189 E-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred h-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1 12333211 22333333332222 3345678999999864443333467888899999988777899999888998
Q ss_pred HHHHHHhCCCCCCCch-hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHH--HHHHHHHHHHHHhhHHHHH
Q psy10461 1053 KAIVNVIGMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLKAHKKAIR 1129 (1359)
Q Consensus 1053 ~aIa~vlG~~~lsp~l-~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~--mrIc~eLLelLkD~~~sVR 1129 (1359)
.-+....... +...+ .-+.++++.+|.+.+..|+.-++..+|.|.. |.+.-..- + +-....|.++|...+..||
T Consensus 268 SYlsDg~~E~-i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT-G~D~QTqv-iI~~G~L~a~~~lLs~~ke~ir 344 (526)
T COG5064 268 SYLSDGPNEK-IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT-GSDDQTQV-IINCGALKAFRSLLSSPKENIR 344 (526)
T ss_pred HHhccCcHHH-HHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee-cCccceeh-heecccHHHHHHHhcChhhhhh
Confidence 8775532100 00000 1256789999999999999999999998865 22111110 0 1122344677888889999
Q ss_pred HHHHHHHHHHHHHhCc-h--------hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC--cc--------ccHHHHHHh
Q psy10461 1130 RATVNTFGYIAKAIGP-H--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--PF--------TVLPALMNE 1190 (1359)
Q Consensus 1130 ~AAv~tLg~IAk~~Gp-e--------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g--P~--------~VLPaLLnl 1190 (1359)
+.|+=++..|.. |. + +++|-|+..|..-++..|--++-|+......|. |. .++..|.++
T Consensus 345 KEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~ 422 (526)
T COG5064 345 KEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDL 422 (526)
T ss_pred hhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHH
Confidence 999999988765 32 1 455667777777777777777777777665552 32 566777777
Q ss_pred cCCC---CchhHHHHHHHHHHHHHHh----hhhc---hhhHH--hHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCC
Q psy10461 1191 YRVP---ELNVQNGVLKALSFLFEYI----GEMG---KDYIY--AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG 1258 (1359)
Q Consensus 1191 LkDp---E~nVR~~VlkaLs~Iae~I----G~~~---kdYL~--~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG 1258 (1359)
|... .++|..-++..+-.+.+.= |... ..|+. -.+-.+.++....+..+-..|-++|. ..+|
T Consensus 423 L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe------~fFg 496 (526)
T COG5064 423 LDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIE------KFFG 496 (526)
T ss_pred HhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHH------HHcc
Confidence 7643 3445543333322221111 1111 11221 23445555544445555444444443 3457
Q ss_pred chhHHhhh
Q psy10461 1259 CEDALTHL 1266 (1359)
Q Consensus 1259 ~EdaliHl 1266 (1359)
-||++..+
T Consensus 497 eeD~vd~l 504 (526)
T COG5064 497 EEDAVDEL 504 (526)
T ss_pred cchhhhhc
Confidence 77777664
No 57
>KOG1820|consensus
Probab=97.80 E-value=0.00078 Score=86.74 Aligned_cols=197 Identities=20% Similarity=0.278 Sum_probs=153.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccch
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYL 984 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl 984 (1359)
-..|...+-|+.|.-|..|++.+..+..+-+ .. ....|.
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~----------------------------------------~~~~~~ 293 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KE----------------------------------------IVKGYT 293 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cc----------------------------------------cccCcc
Confidence 3445667889999999999998888777544 10 012334
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 1064 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~l 1064 (1359)
..+...+..++.|.+-.|-..||.+|..||.-+... ...+....++.|+.+++|..++++-.++++++++++..
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~----- 367 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST----- 367 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----
Confidence 445555667889999999999999999999999743 24677889999999999999999999999999998843
Q ss_pred CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy10461 1065 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD-RGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1065 sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
++..+.+.+...++++++.+|..|..++...-. .+...+....+-.+|..++..-.|....||.+|.++++.+.+.+
T Consensus 368 --~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 368 --PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred --cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999998755 33233333324445655667778999999999999999999999
Q ss_pred CchhHHH
Q psy10461 1144 GPHDVLA 1150 (1359)
Q Consensus 1144 GpedVlp 1150 (1359)
|.+.+..
T Consensus 446 Ge~~~~k 452 (815)
T KOG1820|consen 446 GEEVFKK 452 (815)
T ss_pred hHHHHHH
Confidence 9754433
No 58
>KOG1061|consensus
Probab=97.72 E-value=0.0016 Score=81.77 Aligned_cols=391 Identities=18% Similarity=0.158 Sum_probs=194.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccccc--c
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRV--K 981 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~i--k 981 (1359)
.+..++.+.+|++|-+|.+|++.+.. ++.. .+...+.+.++-.+.+....+. +.....+..+...- .
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~----l~v~----~i~ey~~~Pl~~~l~d~~~yvR---ktaa~~vakl~~~~~~~ 155 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGC----LRVD----KITEYLCDPLLKCLKDDDPYVR---KTAAVCVAKLFDIDPDL 155 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceee----Eeeh----HHHHHHHHHHHHhccCCChhHH---HHHHHHHHHhhcCChhh
Confidence 47778899999999999999998764 3333 2233566666666666544431 11223333333221 1
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
-+-..+++.+.+++.|.++.|=..|..++..|.+.-.......+...++.-+++.|.+ ..|+-.. .-|+.++.-.-.
T Consensus 156 ~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e-c~EW~qi--~IL~~l~~y~p~ 232 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE-CTEWGQI--FILDCLAEYVPK 232 (734)
T ss_pred ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH-hhhhhHH--HHHHHHHhcCCC
Confidence 3456788889999999999997777777766654332101112233344445555432 3333332 112222222211
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCc------------------hhhHH---HHHHHHHHH--
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEY------------------VSARE---WMRICFELL-- 1118 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~------------------v~~kE---~mrIc~eLL-- 1118 (1359)
+ .-...+++.++.+.+++.+..|..++...+-.+...-..+ -+... +-++|..+.
T Consensus 233 d--~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~ 310 (734)
T KOG1061|consen 233 D--SREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKR 310 (734)
T ss_pred C--chhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhC
Confidence 1 1124567777777777777766655555554443321110 00000 111221110
Q ss_pred -HHHHhh----------HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhc----ccc-hhHHHHHHHHHHHhhhcCc-c
Q psy10461 1119 -ELLKAH----------KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV----QER-QNRVCTTVAIAIVAETCSP-F 1181 (1359)
Q Consensus 1119 -elLkD~----------~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~----qe~-~VRv~ta~AIg~LAea~gP-~ 1181 (1359)
.+|+.+ --.|...=.+++..++.. ..++.++..|+. -+- -+|.+ ..|+|.+|-.... +
T Consensus 311 p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~----~nl~qvl~El~eYatevD~~fvrka-Iraig~~aik~e~~~ 385 (734)
T KOG1061|consen 311 PEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND----ANLAQVLAELKEYATEVDVDFVRKA-VRAIGRLAIKAEQSN 385 (734)
T ss_pred hHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH----hHHHHHHHHHHHhhhhhCHHHHHHH-HHHhhhhhhhhhhhh
Confidence 111100 001222222222222221 122223333321 111 13333 5677777655433 4
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhc-cChHHHHHHHHHHHHHHhhhcCCCch
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD-RDLVHRQTACATIKHMALGVYGFGCE 1260 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D-~D~~VRqtA~saIk~LAl~~~glG~E 1260 (1359)
.++..|+.+++-.+-.|-.-++..+..++.++.... ..|++.+-..+.. .++.-|.+-.+.+..-+.. .+
T Consensus 386 ~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~-----i~ 456 (734)
T KOG1061|consen 386 DCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAER-----IE 456 (734)
T ss_pred hhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhc-----cC
Confidence 788888888886665555556666666666665422 2333332221110 1344555545555443321 22
Q ss_pred hHHhhhHHhhhcccccCChHHHHHHHHHHHH--HHHhhchHHHHHhHhhhhccccc--cchh---hHHHHHH
Q psy10461 1261 DALTHLLNYVWPNIFETSPHLVQAFMDAVEG--LRVALGPVRILQYVLQGLFHPAR--KVRD---VYWKIYN 1325 (1359)
Q Consensus 1261 daliHlLnlvlPnI~Etsp~Vi~~ileaLea--Lr~aLG~~~ll~~vLpgLfhpA~--kvrd---~~WRvyn 1325 (1359)
++ ..+|+.++.|.+++...|+..++-+.=. +..+-..+-+++.+|+.-..-.+ -+|| .|||++.
T Consensus 457 ~a-~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 457 NA-LELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred cH-HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 33 3677888888888888887554444322 12222345677777776553332 1344 5888884
No 59
>KOG1062|consensus
Probab=97.71 E-value=0.039 Score=69.97 Aligned_cols=273 Identities=14% Similarity=0.193 Sum_probs=161.3
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhc----cCchhH-HHHHHHHHHHHhhcc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ----EQTTED-VVMLNGFGTIVNQLG 977 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLq----d~~~eD-~v~lkaLg~Lae~Lg 977 (1359)
++.+.+-..+++.++.+|+.|+-+..+++...+ .++..|++.+. +...++ ...+..+-.+|+.-+
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P----------~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP----------DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc----------hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 446666678899999999999999999998544 24555655443 322222 122222223333322
Q ss_pred cccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh-hhh--------HHhHHHHHHHHHHHHhcccChHHHHHH
Q psy10461 978 KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK-TCQ--------EEKLMGHLGVVLYEYLGEEYPEVLGSI 1048 (1359)
Q Consensus 978 ~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~-~~~--------e~~lL~~Ll~iLle~L~De~pEVl~si 1048 (1359)
+.+ .|...+.+-+...|+ .+.. .+. -+.+|+.-+.-++.-||..+++.--..
T Consensus 212 ~~l-~~fr~l~~~lV~iLk------------------~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M 272 (866)
T KOG1062|consen 212 DAL-SYFRDLVPSLVKILK------------------QLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLM 272 (866)
T ss_pred HHH-HHHHHHHHHHHHHHH------------------HHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHH
Confidence 211 122222222222222 1111 000 035666666667777877777655555
Q ss_pred HHHHHHHHHHhCCCCCC--CchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC---chhhHHHHHH----------
Q psy10461 1049 LGALKAIVNVIGMTKMT--PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPE---YVSAREWMRI---------- 1113 (1359)
Q Consensus 1049 L~AL~aIa~vlG~~~ls--p~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e---~v~~kE~mrI---------- 1113 (1359)
...|..++...+...-. ..+-+-+.+|..| +.+...|..++++||.|-..-.. |+.-.-++++
T Consensus 273 ~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr 350 (866)
T KOG1062|consen 273 NDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR 350 (866)
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH
Confidence 56677776654322110 0111222222222 45567888999999998653222 2221222222
Q ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc--ccHHHHHHh
Q psy10461 1114 -CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNE 1190 (1359)
Q Consensus 1114 -c~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~--~VLPaLLnl 1190 (1359)
=..+++-|+|...+||+-|.+.+-.|.+.-+-..+...|+..|.+.+..++..++..|..+|+.+.|. =.+..+++.
T Consensus 351 Hr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~V 430 (866)
T KOG1062|consen 351 HRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKV 430 (866)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 22456889999999999999998888876444566777888888778889999999999999999996 356666666
Q ss_pred cCCCCchhHHHHHHHH
Q psy10461 1191 YRVPELNVQNGVLKAL 1206 (1359)
Q Consensus 1191 LkDpE~nVR~~VlkaL 1206 (1359)
|+.---.|+--|...+
T Consensus 431 l~~aG~~V~~dv~~nl 446 (866)
T KOG1062|consen 431 LKTAGDFVNDDVVNNL 446 (866)
T ss_pred HHhcccccchhhHHHH
Confidence 6655555565555554
No 60
>KOG1248|consensus
Probab=97.60 E-value=0.007 Score=78.97 Aligned_cols=236 Identities=14% Similarity=0.203 Sum_probs=159.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCc-cchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHH
Q psy10461 913 KDENEQYRKMVMESIEKTMSNLGA-ADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGT 990 (1359)
Q Consensus 913 KDes~~VR~~Aa~~L~~Ia~~LGp-e~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpi 990 (1359)
++.+..+++.+-+.|..+..- +. +....+....+.+.+.+.+|+...-. .-.++++..|++.++......+.++++=
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344899999999999998874 32 22223333456666777777655444 6778899999999995444444555554
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHH--hhhhhH---HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCC
Q psy10461 991 ILWRLNNKSAKVRQQAADLISRIAVV--MKTCQE---EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMT 1065 (1359)
Q Consensus 991 Il~LL~Des~~VR~aAAe~Is~LA~v--l~~~~e---~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ls 1065 (1359)
++=.+++.+...|+.|-++|-.|+.+ .-.... ...++..+.++++.+..+-+-++.+-|-++..++...+.-.-.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 44444999999999999999988842 111111 3467778888888874333444333245666665554322112
Q ss_pred CchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Q psy10461 1066 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1066 p~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
+.+..++..+...+...+..++.+|+..+..+...-++..-...+..+...++.|++|++-.+|..+-..|..+...||.
T Consensus 823 ~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 33445555555567899999999999999998875554333332444666667899999999999999999999999999
Q ss_pred hhHH
Q psy10461 1146 HDVL 1149 (1359)
Q Consensus 1146 edVl 1149 (1359)
+++-
T Consensus 903 ~eLe 906 (1176)
T KOG1248|consen 903 EELE 906 (1176)
T ss_pred HHHH
Confidence 7553
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.58 E-value=0.021 Score=69.25 Aligned_cols=280 Identities=18% Similarity=0.244 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhc----------cCch---hHHHHHHHHHHHHhhcccccc-c
Q psy10461 917 EQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ----------EQTT---EDVVMLNGFGTIVNQLGKRVK-P 982 (1359)
Q Consensus 917 ~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLq----------d~~~---eD~v~lkaLg~Lae~Lg~~ik-P 982 (1359)
+++=..+.+.+..++..++++.-. .+++.+..+|. +... ...-.+-.+..++..+...+. |
T Consensus 111 ~~~L~~~~~l~~~iv~~l~~~~q~-----~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~ 185 (415)
T PF12460_consen 111 DRVLELLSRLINLIVRSLSPEKQQ-----EILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP 185 (415)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc
Confidence 566666777788888888776222 34555554443 1111 112334446677777777654 6
Q ss_pred chHhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhC
Q psy10461 983 YLPQICGTILWRLN-NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 983 yl~qILpiIl~LL~-Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEVl~siL~AL~aIa~vlG 1060 (1359)
...+++.-+..++. ..++.+|..++.+++.++.-... .+.+..++..+...+ ....++.....+..+.-+.+++=
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH
Confidence 77777777666654 45699999999999999876532 223344444444444 22222333333344444444432
Q ss_pred CCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10461 1061 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1061 ~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IA 1140 (1359)
++ ..|...+++..++.++.| +.+...+++.|+.|..-..++.... ++..||-. -
T Consensus 263 ~R-~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~---------------~~a~vklL--------y 316 (415)
T PF12460_consen 263 MR-GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE---------------NHANVKLL--------Y 316 (415)
T ss_pred Hc-CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc---------------ccchhhhH--------H
Confidence 22 234466899999999888 7788889999998865322222210 00011100 0
Q ss_pred HHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-----cc--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHh
Q psy10461 1141 KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-----PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1141 k~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-----P~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~I 1213 (1359)
+.-=-..++|.|++.++..+...|..-..|++.|.+.+- ++ +++|.++..|.-++.+|+.+++.+|..+.+.-
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 000001333444444443222233333444554444332 11 69999999999999999999999998777766
Q ss_pred hhhchhhHHhHHHHHHH
Q psy10461 1214 GEMGKDYIYAVTPLLED 1230 (1359)
Q Consensus 1214 G~~~kdYL~~VlPlLed 1230 (1359)
.+...+|+..++|.|..
T Consensus 397 ~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 397 PELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66778899999997654
No 62
>KOG1020|consensus
Probab=97.57 E-value=0.13 Score=68.87 Aligned_cols=104 Identities=11% Similarity=0.201 Sum_probs=74.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
.+..|+..|......+|..|+++|+.|+. ..|..+. .+.+..++..-|.|+..-+ ++++..+|+++-.-.+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive-~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e---- 888 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVE-ADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE---- 888 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHh-cChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH----
Confidence 36777788888899999999999999987 3343221 1234455566677766655 6777777777665554
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~ 1015 (1359)
+..+.-..|..+..|+.-.||..+...+..++.
T Consensus 889 ~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 889 LIFQYYDQIIERILDTGVSVRKRVIKILRDICE 921 (1692)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 445556666678889999999999988888876
No 63
>KOG4224|consensus
Probab=97.57 E-value=0.0046 Score=72.01 Aligned_cols=336 Identities=16% Similarity=0.114 Sum_probs=191.0
Q ss_pred HHHHHHhhccCchhH-HHHHHHHHHHHhhcccc-cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhH
Q psy10461 948 IDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR-VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKL 1025 (1359)
Q Consensus 948 ld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~-ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~l 1025 (1359)
..-++.++|++...- .....++|.++-..+.- +---+.-+=+.|.....| .-.||..+..||.+++..-..-.+-..
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhh
Confidence 444566666654332 33444455555444431 111122333355555554 557889999999999876332222233
Q ss_pred HHHHHHHHHHHhccc-ChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCC
Q psy10461 1026 MGHLGVVLYEYLGEE-YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GPE 1103 (1359)
Q Consensus 1026 L~~Ll~iLle~L~De-~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~-g~e 1103 (1359)
...|.|.. .|..+ +--|..+..++|-.+...-..+..- ...--+|-++.+++..+..||+-|-.+|+.||-- ...
T Consensus 166 sGaL~plt--rLakskdirvqrnatgaLlnmThs~EnRr~L-V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 166 SGALEPLT--RLAKSKDIRVQRNATGALLNMTHSRENRRVL-VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred ccchhhhH--hhcccchhhHHHHHHHHHHHhhhhhhhhhhh-hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 33344432 25333 3335556666666654332111000 0113478889999999999999999999998741 110
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHhhhcccchhHHHHHHHHHHHhhh
Q psy10461 1104 YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQNRVCTTVAIAIVAET 1177 (1359)
Q Consensus 1104 ~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea 1177 (1359)
..-...-.++...|+++..|..++|...|..+|+.|+..-.-+ .-+|.++..+++.--.+=.....+|-.|+-.
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 0000112336667788889999999999999999998742221 1245566666443222222223444333311
Q ss_pred c------CccccHHHHHHhcCCCCch-hHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1178 C------SPFTVLPALMNEYRVPELN-VQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1178 ~------gP~~VLPaLLnlLkDpE~n-VR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
= ....+|..|+++|+-.+.+ +|..+..+|..++-.-....+.+. .--+|.+..++.|....||.--...+..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 1 1126788899999866654 788888888766653322222222 3467888889999998888544445555
Q ss_pred HHhhhcCCCchhHHh-hhHHhhhcccccCChHHHHHHHHHH
Q psy10461 1250 MALGVYGFGCEDALT-HLLNYVWPNIFETSPHLVQAFMDAV 1289 (1359)
Q Consensus 1250 LAl~~~glG~Edali-HlLnlvlPnI~Etsp~Vi~~ileaL 1289 (1359)
||+.=. ..++.+. .++|.+.|...+.+.+|+-+...++
T Consensus 403 Lal~d~--~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 403 LALNDN--DKEALLDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred HHhccc--cHHHHhhcCCcceeecccCccchhhcccHHHHH
Confidence 554311 1221111 3577888888888888876554444
No 64
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.41 E-value=0.02 Score=67.07 Aligned_cols=197 Identities=16% Similarity=0.275 Sum_probs=135.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhc-CccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc--cc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNL-GAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG--KR 979 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~L-Gpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg--~~ 979 (1359)
.+...+..+.+.+...|..+++.|..+...- -++.+. .-...|++.++-.++....++ ..++++++.++-.+| ..
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~-~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVE-DRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 3667788999999999999999999887432 223222 223457788888776655544 667788999998877 55
Q ss_pred cccchHhHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHhhhhhH--HhHHHHHHHHHH-HHhc--c--------cChHH
Q psy10461 980 VKPYLPQICGTILWRLNNKS--AKVRQQAADLISRIAVVMKTCQE--EKLMGHLGVVLY-EYLG--E--------EYPEV 1044 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des--~~VR~aAAe~Is~LA~vl~~~~e--~~lL~~Ll~iLl-e~L~--D--------e~pEV 1044 (1359)
....+..+.|+|...++|.+ ..+|.+++.+++-++-+-....+ ..++..+-.++. ..+. . ..+.+
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 56778899999999999865 46788888888888766542211 112222222222 1121 1 12456
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q psy10461 1045 LGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1101 (1359)
Q Consensus 1045 l~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g 1101 (1359)
+.+++.+-.-+...++...+.......+|.+..+|...+-.||-+|-++|..|-+.+
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 777777777777666543333345678899999999999999999999999987643
No 65
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.39 E-value=0.0014 Score=64.29 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChH
Q psy10461 964 VMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE 1043 (1359)
Q Consensus 964 v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pE 1043 (1359)
..+.++..++..++..+.+|++.|++.++..+.|++..||-.|++++-+|+.+..... -..+..++..|...+.|.+++
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchh
Confidence 4567788999999999999999999999999999999999999999999999887322 235566777788888888888
Q ss_pred HHHHHHHHHHHH
Q psy10461 1044 VLGSILGALKAI 1055 (1359)
Q Consensus 1044 Vl~siL~AL~aI 1055 (1359)
|..++ ..|+.+
T Consensus 84 Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 84 VRSAA-ELLDRL 94 (97)
T ss_pred HHHHH-HHHHHH
Confidence 87766 555543
No 66
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.38 E-value=0.001 Score=65.19 Aligned_cols=81 Identities=19% Similarity=0.098 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhhcCcc------ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccCh
Q psy10461 1164 RVCTTVAIAIVAETCSPF------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 1237 (1359)
Q Consensus 1164 Rv~ta~AIg~LAea~gP~------~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~ 1237 (1359)
|.....+++.+|-+++.. +++|.+++.+.|++..||..+|.+|..+++..+...-.|+..|...|-+++.|.|.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 666677777777777642 79999999999999999999999999999999887777889999999999999999
Q ss_pred HHHHHHH
Q psy10461 1238 VHRQTAC 1244 (1359)
Q Consensus 1238 ~VRqtA~ 1244 (1359)
.||+.|.
T Consensus 83 ~Vr~~a~ 89 (97)
T PF12755_consen 83 NVRSAAE 89 (97)
T ss_pred hHHHHHH
Confidence 9999654
No 67
>KOG1943|consensus
Probab=97.37 E-value=0.16 Score=66.40 Aligned_cols=225 Identities=19% Similarity=0.245 Sum_probs=140.1
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
.+++.++..++..++|.+..||=.||..+++++.-+..+..++++...+- ++.- .|.+..+-++| -+|..++.. |
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p-~e~~~aWHgac-LaLAELA~r-G- 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNP-AEDDSAWHGAC-LALAELALR-G- 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCc-CCchhHHHHHH-HHHHHHHhc-C-
Confidence 56678888899999999999999999999999988876655666666655 1111 23344455444 455555543 1
Q ss_pred CCCCC-chhchHHHHHHHhc--CC------CHHHHHHHHHHHHHHHhh-CCCchhhHHHHHHHHHHH-HHHHhhHHHHHH
Q psy10461 1062 TKMTP-PIKDLLPRLTPILK--NR------HEKVQENCIDLVGRIADR-GPEYVSAREWMRICFELL-ELLKAHKKAIRR 1130 (1359)
Q Consensus 1062 ~~lsp-~l~~lLP~L~~LLk--Dr------~~rVR~AAielIg~IA~~-g~e~v~~kE~mrIc~eLL-elLkD~~~sVR~ 1130 (1359)
-+-| -+.+++|.|..-|. ++ ...||.++.-.+=.++.. .+..+.+. +-++...|+ ..+=|++=.+|+
T Consensus 412 -lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~-l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 -LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPV-LQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred -CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHH-HHHHHHHHHHHHhcCchhhHhH
Confidence 1222 13345555544331 22 246999988888777762 33223221 222443333 346788889999
Q ss_pred HHHHHHHHHHHHhCch----hHHH-----------------------------HHHHhh---hcccc--hhHHHHHHHHH
Q psy10461 1131 ATVNTFGYIAKAIGPH----DVLA-----------------------------TLLNNL---KVQER--QNRVCTTVAIA 1172 (1359)
Q Consensus 1131 AAv~tLg~IAk~~Gpe----dVlp-----------------------------~LL~~L---k~qe~--~VRv~ta~AIg 1172 (1359)
+|..+|....-..|.- +++. .+++.+ |...| .+|..++.++.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 9998886554432321 1100 011111 23333 47888888888
Q ss_pred HHhhhcCcc---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHh
Q psy10461 1173 IVAETCSPF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1173 ~LAea~gP~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~I 1213 (1359)
.++..--.+ .++|-++...-.+..+.|.++..+.+.+.-.+
T Consensus 570 ~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 570 KLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 877654322 68899999998899999999999887665544
No 68
>KOG1243|consensus
Probab=97.37 E-value=0.0032 Score=78.66 Aligned_cols=263 Identities=15% Similarity=0.157 Sum_probs=174.9
Q ss_pred HHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHH
Q psy10461 971 TIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILG 1050 (1359)
Q Consensus 971 ~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~ 1050 (1359)
..+..++.+++..+-.++.++..+-- ++..-|+.--..+.. .+....++-...++++.|+..+ ++.+....++-
T Consensus 240 ~~~~~~~gff~n~fvd~~~fLeel~l-ks~~eK~~Ff~~L~~---~l~~~pe~i~~~kvlp~Ll~~~--~~g~a~~~~lt 313 (690)
T KOG1243|consen 240 LECRLLGGFFRNDFVDTLLFLEELRL-KSVEEKQKFFSGLID---RLDNFPEEIIASKVLPILLAAL--EFGDAASDFLT 313 (690)
T ss_pred HHHHhccccccchHHHHHHHHHhccc-CcHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHh--hccccchhhhh
Confidence 44555666666555556655554322 455555544444443 3332223445566778887776 23333333445
Q ss_pred HHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC-chhhHHHHHHHHHHHHHHHhhHHHHH
Q psy10461 1051 ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPE-YVSAREWMRICFELLELLKAHKKAIR 1129 (1359)
Q Consensus 1051 AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e-~v~~kE~mrIc~eLLelLkD~~~sVR 1129 (1359)
.+-.+...++.+ ++.+.++|.|+++++-...-+|.-..+.+..+++.-.. -+.. +|...+.--+.|.++.+|
T Consensus 314 pl~k~~k~ld~~---eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d----~I~phv~~G~~DTn~~Lr 386 (690)
T KOG1243|consen 314 PLFKLGKDLDEE---EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILND----QIFPHVALGFLDTNATLR 386 (690)
T ss_pred HHHHhhhhcccc---ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcc----hhHHHHHhhcccCCHHHH
Confidence 555555655544 25667999999998877777787777777777664331 1111 144444556889999999
Q ss_pred HHHHHHHHHHHHHhCchhHHHHHHHhhh---c-ccchhHHHHHHHHHHHhhhcCcc----ccHHHHHHhcCCCCchhHHH
Q psy10461 1130 RATVNTFGYIAKAIGPHDVLATLLNNLK---V-QERQNRVCTTVAIAIVAETCSPF----TVLPALMNEYRVPELNVQNG 1201 (1359)
Q Consensus 1130 ~AAv~tLg~IAk~~GpedVlp~LL~~Lk---~-qe~~VRv~ta~AIg~LAea~gP~----~VLPaLLnlLkDpE~nVR~~ 1201 (1359)
+.++..+..|+..+++..+...++..|. . ++.-+|--+++++|.|+..+.+. .+.-++.+.++||-+.-|..
T Consensus 387 e~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a 466 (690)
T KOG1243|consen 387 EQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKA 466 (690)
T ss_pred HHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhh
Confidence 9999999999999998765555554443 3 22347999999999999888664 56777888999999999999
Q ss_pred HHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHH
Q psy10461 1202 VLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIK 1248 (1359)
Q Consensus 1202 VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk 1248 (1359)
.+..+....+++.. .+.-..|+|.+.-+.-|.+..+|..|-.++.
T Consensus 467 ~v~~l~at~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 467 GVLALAATQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred hhHHHhhcccccch--hhhhhhccccccccccCcccchhhHHHHHHH
Confidence 99998777777654 2222567777666778899999987665554
No 69
>KOG1062|consensus
Probab=97.31 E-value=0.0069 Score=76.36 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=72.0
Q ss_pred HHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHH
Q psy10461 966 LNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVL 1045 (1359)
Q Consensus 966 lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl 1045 (1359)
..++.++..-++.. -...+.|-+..++++.++.||++|+-|.-++.... +++++++++..-+.|.|.+.-|+
T Consensus 125 glAL~alg~i~s~E---mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-----P~l~e~f~~~~~~lL~ek~hGVL 196 (866)
T KOG1062|consen 125 GLALCALGNICSPE---MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-----PDLVEHFVIAFRKLLCEKHHGVL 196 (866)
T ss_pred HHHHHHhhccCCHH---HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-----chHHHHhhHHHHHHHhhcCCcee
Confidence 33444444444433 35789999999999999999999999988886443 46778888888888988887777
Q ss_pred HHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc
Q psy10461 1046 GSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK 1080 (1359)
Q Consensus 1046 ~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk 1080 (1359)
...+..+-.++..-. + ...+.+++.|.++.+|+
T Consensus 197 ~~~l~l~~e~c~~~~-~-~l~~fr~l~~~lV~iLk 229 (866)
T KOG1062|consen 197 IAGLHLITELCKISP-D-ALSYFRDLVPSLVKILK 229 (866)
T ss_pred eeHHHHHHHHHhcCH-H-HHHHHHHHHHHHHHHHH
Confidence 655555555554311 1 12245667777777654
No 70
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.29 E-value=0.00082 Score=62.67 Aligned_cols=84 Identities=25% Similarity=0.296 Sum_probs=58.4
Q ss_pred HHHHHhh-hcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHH
Q psy10461 1150 ATLLNNL-KVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 1228 (1359)
Q Consensus 1150 p~LL~~L-k~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlL 1228 (1359)
+.|++.+ ++.+..+|..++.+++. ++...++|.|+..++|+++.||..++.+|+.+ |. ..+++.|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~----~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~------~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE----LGDPEAIPALIELLKDEDPMVRRAAARALGRI----GD------PEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC----CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH------HHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC------HHHHHHH
Confidence 4566666 45556678777777763 33446888899999999999999998888765 32 3567777
Q ss_pred HHHHhcc-ChHHHHHHHHHH
Q psy10461 1229 EDALMDR-DLVHRQTACATI 1247 (1359)
Q Consensus 1229 edaL~D~-D~~VRqtA~saI 1247 (1359)
.+++.|. +..+|..|+.+|
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhc
Confidence 7777654 567787766654
No 71
>KOG1059|consensus
Probab=97.28 E-value=0.31 Score=61.53 Aligned_cols=289 Identities=15% Similarity=0.154 Sum_probs=173.3
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccc-hh---------hhHHHHHHHHHHHh---hccCchhHHHHHHH--
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAAD-ID---------SRLEEQLIDGILYA---FQEQTTEDVVMLNG-- 968 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~-l~---------~~L~~~Lld~LLpl---Lqd~~~eD~v~lka-- 968 (1359)
.+..+...++..+-.+...|+..+.-+.. +|-.. |. .....+-.-+.+-+ |++.++.-..+...
T Consensus 37 ~l~e~r~E~k~~d~~~k~~a~~kl~yl~m-lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~r 115 (877)
T KOG1059|consen 37 CLEEIRQELKSDDLNVKSNAVLKLTYLEM-LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLR 115 (877)
T ss_pred HHHHHHHHhhchhhhhhHHHHHHHHHHHH-HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHH
Confidence 35555667777777888888888777665 35431 11 11111112223322 33322211111111
Q ss_pred ----------HHHHHhhccccccc-chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh
Q psy10461 969 ----------FGTIVNQLGKRVKP-YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL 1037 (1359)
Q Consensus 969 ----------Lg~Lae~Lg~~ikP-yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L 1037 (1359)
.|..+.+|+.++.| ....|-+=+..+++..-+.||..|.-++=++.--. ++-|...++-|.+.|
T Consensus 116 kdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-----PeAlr~~FprL~EkL 190 (877)
T KOG1059|consen 116 KDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-----PEALRPCFPRLVEKL 190 (877)
T ss_pred HHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-----hHhHhhhHHHHHHhc
Confidence 34444555555543 35677788889999999999999998887775333 356677889999999
Q ss_pred cccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHH
Q psy10461 1038 GEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF 1115 (1359)
Q Consensus 1038 ~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk--Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~ 1115 (1359)
.|.+|.|++++++.+..++..-. .+ .=++-|-++.++. +.+|+.- -++.+|+.++..-+ -+..+ +..
T Consensus 191 eDpDp~V~SAAV~VICELArKnP----kn-yL~LAP~ffkllttSsNNWmLI-KiiKLF~aLtplEP-RLgKK----Lie 259 (877)
T KOG1059|consen 191 EDPDPSVVSAAVSVICELARKNP----QN-YLQLAPLFYKLLVTSSNNWVLI-KLLKLFAALTPLEP-RLGKK----LIE 259 (877)
T ss_pred cCCCchHHHHHHHHHHHHHhhCC----cc-cccccHHHHHHHhccCCCeehH-HHHHHHhhccccCc-hhhhh----hhh
Confidence 99999999999888888887632 22 2356777888764 6678762 23445554433111 11122 222
Q ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHHHhC-chh------HHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc--ccHH
Q psy10461 1116 ELLELLKAH-KKAIRRATVNTFGYIAKAIG-PHD------VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLP 1185 (1359)
Q Consensus 1116 eLLelLkD~-~~sVR~AAv~tLg~IAk~~G-ped------Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~--~VLP 1185 (1359)
.++++.... --++=..|++++....-.-| +++ .+..|--.+..++.++++-...|++.|+++--.. .-.-
T Consensus 260 plt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd 339 (877)
T KOG1059|consen 260 PITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD 339 (877)
T ss_pred HHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH
Confidence 233444333 23555667777655422223 221 1222222234567779999999999998765322 3456
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHH
Q psy10461 1186 ALMNEYRVPELNVQNGVLKALSFL 1209 (1359)
Q Consensus 1186 aLLnlLkDpE~nVR~~VlkaLs~I 1209 (1359)
.++++|.|.+.++|..++.-|..|
T Consensus 340 lIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 340 LILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred HHHHHhccCCchhHHHHHHHHHHH
Confidence 689999999999999998887544
No 72
>KOG1248|consensus
Probab=97.28 E-value=0.082 Score=69.54 Aligned_cols=232 Identities=13% Similarity=0.128 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhh--cccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc
Q psy10461 963 VVMLNGFGTIVNQ--LGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE 1040 (1359)
Q Consensus 963 ~v~lkaLg~Lae~--Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De 1040 (1359)
.-..+.+..++.. .-.++..++..|...+..-+++.+..+|..+..+|..|-+.... ...+++.++++-++-.+++.
T Consensus 672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~-e~~~~i~k~I~EvIL~~Ke~ 750 (1176)
T KOG1248|consen 672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA-EHCDLIPKLIPEVILSLKEV 750 (1176)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHhcccc
Confidence 3344445555555 11245688888888888888889999999999999999877762 12456667777666666776
Q ss_pred ChHHHHHHHHHHHHHH---HHh--CCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHH
Q psy10461 1041 YPEVLGSILGALKAIV---NVI--GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF 1115 (1359)
Q Consensus 1041 ~pEVl~siL~AL~aIa---~vl--G~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~ 1115 (1359)
+-..+.+...+|..+. ... |.+.....++++++.|..-+-++..+++-.-|-++..+...-..+.+..-++.+..
T Consensus 751 n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 751 NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6555554444444443 332 32211224667777777755555666655446677776653333444332444555
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCC
Q psy10461 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195 (1359)
Q Consensus 1116 eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE 1195 (1359)
.+.-+|.....+||++|+.-+..+...|+..-+.+.+ +++||.++.+++|-.
T Consensus 831 ~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~----------------------------~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 831 MVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL----------------------------EELLPSLLALSHDHK 882 (1176)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH----------------------------HHHHHHHHHHHHhhh
Confidence 5556788889999999999998888876532222211 137888888888888
Q ss_pred chhHHHHHHHHHHHHHHhhhhchhhHHhHHH
Q psy10461 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTP 1226 (1359)
Q Consensus 1196 ~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlP 1226 (1359)
.++|..|-.-|..+...+|. +++..++|
T Consensus 883 ~~~r~Kvr~LlekLirkfg~---~eLe~~~p 910 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKLIRKFGA---EELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhCH---HHHHhhCH
Confidence 88888888888888888874 44555555
No 73
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.20 E-value=0.0014 Score=63.48 Aligned_cols=70 Identities=20% Similarity=0.128 Sum_probs=57.2
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
.++|.+++.+.|+.+.|+..++++|+.++.........++ ..+++.|..++.+.+..+|..++.++..|+
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999876543333333 348899999999989999988888887764
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.034 Score=68.04 Aligned_cols=258 Identities=16% Similarity=0.122 Sum_probs=138.1
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-hhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM-KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl-~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
.+.|+.|++-.-++|+-.+|-.++|..++.++.-- + ++++...+..|...|..-....+-+++.-|..++.....
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~----~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG----SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 44677777777788888888888888888876432 2 344444555555555322211122333333333332110
Q ss_pred C--CCCCchhchH---------HHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCc--------------hhhHHHHHHHH
Q psy10461 1062 T--KMTPPIKDLL---------PRLTPILKNRHEKVQENCIDLVGRIADR-GPEY--------------VSAREWMRICF 1115 (1359)
Q Consensus 1062 ~--~lsp~l~~lL---------P~L~~LLkDr~~rVR~AAielIg~IA~~-g~e~--------------v~~kE~mrIc~ 1115 (1359)
. ..++.+.+++ =+|+.+|+-.+..--...+..|+.+..- +..| |+.+ |.-+..
T Consensus 337 kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~s~l~ 415 (898)
T COG5240 337 KVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KLSYLD 415 (898)
T ss_pred eeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HHHHHH
Confidence 0 0011111111 1223345544444333344444444331 1111 1111 222222
Q ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhc----CccccHHHHH
Q psy10461 1116 ELLELLKAH-KKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC----SPFTVLPALM 1188 (1359)
Q Consensus 1116 eLLelLkD~-~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~----gP~~VLPaLL 1188 (1359)
-|.+.|.+. ...-.+++++++..+.+..+. +..+..|-..+...+++ -.+..-++++++.- .|-..+-.+.
T Consensus 416 FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIy 493 (898)
T COG5240 416 FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIY 493 (898)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHH
Confidence 122334443 456788889988888887543 34455554444444432 11222336666543 2334566666
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1189 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1189 nlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
|-+--....||.+++.||+.++-.+... .+ ..|.-+|.++++|.|..||..|.-.++.|
T Consensus 494 NR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 494 NRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 6665566779999999998887666532 22 46777889999999999998777777765
No 75
>KOG1077|consensus
Probab=97.17 E-value=0.26 Score=62.00 Aligned_cols=295 Identities=18% Similarity=0.229 Sum_probs=166.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH---HHHHHHHHHHHhhcccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED---VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD---~v~lkaLg~Lae~Lg~~ik 981 (1359)
+..+..+|...++.+-..|+.++..| |..+..+ ..-+.+--+|.+.+..+ .-+.-+|=.+....++.+.
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~ni----G~re~~e----a~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANI----GSREMAE----AFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhh----ccHhHHH----HhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 44455566667788888888877654 4332221 23344444455555544 2223345566666666553
Q ss_pred --cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 982 --PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 982 --Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
.+... |..+|.|.+-.|-.++..+|..|+....+. |.-.+.-+++-|..++.+.
T Consensus 185 ~~~W~~r----iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~--------------------yk~~~~~avs~L~riv~~~ 240 (938)
T KOG1077|consen 185 PGEWAQR----IVHLLDDQHMGVVTAATSLIEALVKKNPES--------------------YKTCLPLAVSRLSRIVVVV 240 (938)
T ss_pred hhhHHHH----HHHHhCccccceeeehHHHHHHHHHcCCHH--------------------HhhhHHHHHHHHHHHHhhc
Confidence 34443 445788888777777777777776544321 1112222223333333333
Q ss_pred CCC--------CCCCchhchHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCC---C--ch--------------------
Q psy10461 1060 GMT--------KMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGRIADRGP---E--YV-------------------- 1105 (1359)
Q Consensus 1060 G~~--------~lsp~l~~lLP~L~~LL-kDr~~rVR~AAielIg~IA~~g~---e--~v-------------------- 1105 (1359)
|.. ...|++.--+=++..++ .-+.+.+|....+.+..|-.... . .+
T Consensus 241 ~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~ 320 (938)
T KOG1077|consen 241 GTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL 320 (938)
T ss_pred ccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc
Confidence 322 01222222222222211 12223333333344443322111 0 00
Q ss_pred -hhHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhH----HHHHHHhhh-cccchhHHHHHHHHHHHhhhc
Q psy10461 1106 -SARE-WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV----LATLLNNLK-VQERQNRVCTTVAIAIVAETC 1178 (1359)
Q Consensus 1106 -~~kE-~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedV----lp~LL~~Lk-~qe~~VRv~ta~AIg~LAea~ 1178 (1359)
++.+ +.+.|..|-.+|.+.+-.||-.|.+++..++..=...+. +..+++.|| ..|-++|.-+..-+=.+|+.-
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 1111 345666667889988999999999999998876222222 335677788 667778877666666666655
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA 1231 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLeda 1231 (1359)
....++.-+++=|..-+..+|.-++-.++.++|.......=|+..++.++.-+
T Consensus 401 Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria 453 (938)
T KOG1077|consen 401 NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA 453 (938)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Confidence 55577788888888888999998888888888887654444677777776644
No 76
>KOG1991|consensus
Probab=97.12 E-value=1 Score=58.88 Aligned_cols=400 Identities=12% Similarity=0.159 Sum_probs=218.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc------
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG------ 977 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg------ 977 (1359)
-..|+..+-.....+|..-..+++.|..+-=|+.|+ .+++.+..++++++... -.++-++..++...-
T Consensus 91 renIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp-----~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee 165 (1010)
T KOG1991|consen 91 RENILETIVQVPELIRVQLTACLNTIIKADYPEQWP-----GLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE 165 (1010)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccch-----hHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence 444555555557788988889999998877777776 47888888888765433 344555555555432
Q ss_pred -----cccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH---------HhHHHHHHHHHHHHh------
Q psy10461 978 -----KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE---------EKLMGHLGVVLYEYL------ 1037 (1359)
Q Consensus 978 -----~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e---------~~lL~~Ll~iLle~L------ 1037 (1359)
..+..+++.|+..+..++.+++. +.++++.-|.++...+.. .+++..-+.+++.-+
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~ 241 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPV 241 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCCh
Confidence 12335556666666677777754 445555555554443221 122222222222221
Q ss_pred --cccChHHHH---------HHHHHHHHHHHHhCCCCCCC---------chhchHHHHHH----H---hcC---CCHHHH
Q psy10461 1038 --GEEYPEVLG---------SILGALKAIVNVIGMTKMTP---------PIKDLLPRLTP----I---LKN---RHEKVQ 1087 (1359)
Q Consensus 1038 --~De~pEVl~---------siL~AL~aIa~vlG~~~lsp---------~l~~lLP~L~~----L---LkD---r~~rVR 1087 (1359)
-..+||++. =++..|..+....|...... ....+.+.+.. + .++ -+++|-
T Consensus 242 E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl 321 (1010)
T KOG1991|consen 242 EVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVL 321 (1010)
T ss_pred hcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 112455543 14455666666666432211 01122222222 1 123 123444
Q ss_pred HHHHHHHHHHHhhCCC--chhhHHHHHHHHH-HHHH----------H-HhhHHHHHH-------------HHHHHHHHHH
Q psy10461 1088 ENCIDLVGRIADRGPE--YVSAREWMRICFE-LLEL----------L-KAHKKAIRR-------------ATVNTFGYIA 1140 (1359)
Q Consensus 1088 ~AAielIg~IA~~g~e--~v~~kE~mrIc~e-LLel----------L-kD~~~sVR~-------------AAv~tLg~IA 1140 (1359)
.-+++.+........- .+.++ +--+..+ ++|+ . .|+..-||+ ||...+-.++
T Consensus 322 ~~~l~fl~~~Vs~~~twkll~PH-l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~ 400 (1010)
T KOG1991|consen 322 YYLLNFLEQCVSHASTWKLLKPH-LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLV 400 (1010)
T ss_pred HHHHHHHHHhccHHHHHHHhhhH-HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHH
Confidence 4444444433221100 01111 1111111 1122 1 344556776 7777778888
Q ss_pred HHhCchhH---HHHHHHhhh------cccch--hHHHHHHHHHHHhhhc---Ccc------ccHHHHHHhcCCCCchhHH
Q psy10461 1141 KAIGPHDV---LATLLNNLK------VQERQ--NRVCTTVAIAIVAETC---SPF------TVLPALMNEYRVPELNVQN 1200 (1359)
Q Consensus 1141 k~~GpedV---lp~LL~~Lk------~qe~~--VRv~ta~AIg~LAea~---gP~------~VLPaLLnlLkDpE~nVR~ 1200 (1359)
.+-|++.+ +..+++.|. ..+.. -...+...+|.|++.+ .|+ -+++.++-.+++|.-..|.
T Consensus 401 ~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lra 480 (1010)
T KOG1991|consen 401 SKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRA 480 (1010)
T ss_pred HhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHH
Confidence 88787643 444455554 22222 3455678889888877 343 3666677778899999999
Q ss_pred HHHHHHHHHH-HHhhhhchhhHHhHHHHHHHHHh-ccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccccc--
Q psy10461 1201 GVLKALSFLF-EYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE-- 1276 (1359)
Q Consensus 1201 ~VlkaLs~Ia-e~IG~~~kdYL~~VlPlLedaL~-D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~E-- 1276 (1359)
++|+.++.++ .-+.. ...+...+.+..+.+. |++.-||..|+-+++.+-.++... ...+...++.++..++.
T Consensus 481 rac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~--~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 481 RACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA--DEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh--hhhHhhhhhHHHHHHHHHH
Confidence 9999988776 22221 1122344444444544 888889987777887775444432 12244444444444333
Q ss_pred --CChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhccccccchhhHHHHHHh
Q psy10461 1277 --TSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNS 1326 (1359)
Q Consensus 1277 --tsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfhpA~kvrd~~WRvyn~ 1326 (1359)
...+.+..+|+.+ .+.+..-+-|--++++.+....+||+-++
T Consensus 557 ne~End~Lt~vme~i--------V~~fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 557 NEVENDDLTNVMEKI--------VCKFSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred HhcchhHHHHHHHHH--------HHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 3334455555555 13456667777777888888999999954
No 77
>KOG1991|consensus
Probab=97.10 E-value=0.49 Score=61.72 Aligned_cols=323 Identities=14% Similarity=0.168 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcc-chhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHH-hhcccccccchHhHHHH
Q psy10461 914 DENEQYRKMVMESIEKTMSNLGAA-DIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIV-NQLGKRVKPYLPQICGT 990 (1359)
Q Consensus 914 Des~~VR~~Aa~~L~~Ia~~LGpe-~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~La-e~Lg~~ikPyl~qILpi 990 (1359)
+.+.+-..-|++.++.+++-+-.. ...+.++.-+++++.|.|+++..-= .-+|-.++.++ .... -...+.+++..
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~ 506 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALEL 506 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHH
Confidence 456778888999999999766543 2235677788899999999865421 23333344444 2222 12456677777
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH----hcccChHHHHHHHHHHHHHHHHhCCCCCC
Q psy10461 991 ILWRLN-NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEY----LGEEYPEVLGSILGALKAIVNVIGMTKMT 1065 (1359)
Q Consensus 991 Il~LL~-Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~----L~De~pEVl~siL~AL~aIa~vlG~~~ls 1065 (1359)
..+.+. |.+--||-+||-.+..+...-.. .+..+...++.+++. .++..-|.+.++ +..++..++.+ ++
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~--~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v---me~iV~~fseE-ls 580 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQ--ADEKVSAHVPPIMQELLKLSNEVENDDLTNV---MEKIVCKFSEE-LS 580 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchh--hhhhHhhhhhHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHHh-hc
Confidence 776666 88999999999998887543321 123344455555544 356566667655 55566666533 56
Q ss_pred CchhchHHHHHH----HhcC---CCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10461 1066 PPIKDLLPRLTP----ILKN---RHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 1138 (1359)
Q Consensus 1066 p~l~~lLP~L~~----LLkD---r~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~ 1138 (1359)
|...++...|.. ++.+ ..+.+-..++.++|.+ +....++..+.++..-++......+..
T Consensus 581 PfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL--------------~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 581 PFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGIL--------------RTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHH--------------HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 655544444443 2221 2222222222222221 111122222233322222222222222
Q ss_pred HHHHhCc--hhHHHHHHHhhhcccchhHHHHHHHHH--HHhhhcCcc--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy10461 1139 IAKAIGP--HDVLATLLNNLKVQERQNRVCTTVAIA--IVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEY 1212 (1359)
Q Consensus 1139 IAk~~Gp--edVlp~LL~~Lk~qe~~VRv~ta~AIg--~LAea~gP~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~ 1212 (1359)
|...+.. .++ ++.+...+.+ ..++.+.|. .+++.+++.+++.-.+-=..+.=+|..+.-+
T Consensus 647 i~~iL~~~i~df--------------yeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 647 IGFILKNDITDF--------------YEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHhhHHH--------------HHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence 2221110 011 1222222222 233445554 7888888888776543322332222211111
Q ss_pred hhh---hchhhHHhHHHHHHHHHhcc---ChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccc
Q psy10461 1213 IGE---MGKDYIYAVTPLLEDALMDR---DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI 1274 (1359)
Q Consensus 1213 IG~---~~kdYL~~VlPlLedaL~D~---D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI 1274 (1359)
=+. ...+|+..+.-++..++.++ |.+. ..||..+..+.+.|.| +....+--++...+..+
T Consensus 713 g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~~kg-~~dq~iplf~~~a~~~l 778 (1010)
T KOG1991|consen 713 GTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILNCKG-LLDQYIPLFLELALSRL 778 (1010)
T ss_pred CchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHHhcC-cHhhHhHHHHHHHHHHH
Confidence 011 12346666666777777664 3333 3478899999999988 55544433444444433
No 78
>KOG2025|consensus
Probab=97.07 E-value=0.086 Score=66.17 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=139.2
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccch
Q psy10461 906 NRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYL 984 (1359)
Q Consensus 906 ~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl 984 (1359)
..++..-|.++-.=| .++-+.+++..+...+....++..++.++|-........+ .-++..+..++..-+..-....
T Consensus 47 n~il~vkKresi~dR--Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf 124 (892)
T KOG2025|consen 47 NYILLVKKRESIPDR--ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF 124 (892)
T ss_pred HHheeeccCCCcHHH--HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH
Confidence 333334445544333 2334445555555443333333344444433333222223 2344445555553333223567
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
+.|..-++.++.|..+.||.+|.-+++++-..=+. +.. .....+...+ .|-.+||+++++..+..
T Consensus 125 n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d--ee~---~v~n~l~~liqnDpS~EVRRaaLsnI~v--------- 190 (892)
T KOG2025|consen 125 NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD--EEC---PVVNLLKDLIQNDPSDEVRRAALSNISV--------- 190 (892)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--Ccc---cHHHHHHHHHhcCCcHHHHHHHHHhhcc---------
Confidence 88999999999999999999999999998632110 111 1233344444 35567899887554332
Q ss_pred CCCchhchHHHHHHHhcCCCHHHHHHHHHH-HHHHHhhCCCchhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH
Q psy10461 1064 MTPPIKDLLPRLTPILKNRHEKVQENCIDL-VGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1064 lsp~l~~lLP~L~~LLkDr~~rVR~AAiel-Ig~IA~~g~e~v~~kE~mrIc~eLLel-LkD~~~sVR~AAv~tLg~IAk 1141 (1359)
...-+|-|+..++|-+..+|+-+.+- +++| +.+.-.+..+ ..|++| |.|...+||.|+++.+-.
T Consensus 191 ----dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~lsi~kr------v~LlewgLnDRe~sVk~A~~d~il~--- 256 (892)
T KOG2025|consen 191 ----DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLSIDKR------VLLLEWGLNDREFSVKGALVDAILS--- 256 (892)
T ss_pred ----CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhhHHHH------HHHHHHhhhhhhhHHHHHHHHHHHH---
Confidence 22568889999999888887666543 3344 4333222222 235666 889999999999987644
Q ss_pred Hh--CchhHHHHHHHhhhcccc-hhHHHHHHHHHH-HhhhcC
Q psy10461 1142 AI--GPHDVLATLLNNLKVQER-QNRVCTTVAIAI-VAETCS 1179 (1359)
Q Consensus 1142 ~~--GpedVlp~LL~~Lk~qe~-~VRv~ta~AIg~-LAea~g 1179 (1359)
.| ..+.-+..+|..+.+..+ .|++.+..|+=. +.+-.|
T Consensus 257 ~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~ 298 (892)
T KOG2025|consen 257 GWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVG 298 (892)
T ss_pred HHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 11 012335567777776655 467766666544 444333
No 79
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.04 E-value=0.0017 Score=62.81 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHH-HHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMG-HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMT 1065 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~-~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ls 1065 (1359)
+++.+..++++.+..+|..++.++++++.....+.. .++. ..++.|.+.|.+.+++++..++++|..++.........
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQ-AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 677788888999999999999999999975432222 2333 67888888888888999999999999997543110000
Q ss_pred CchhchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy10461 1066 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA 1098 (1359)
Q Consensus 1066 p~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA 1098 (1359)
-.....++.+..++.+.+..+|+.++.++..|+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 011247889999999999999999999998875
No 80
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.99 E-value=0.0034 Score=66.73 Aligned_cols=133 Identities=23% Similarity=0.363 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhc--ccchhHHHHH---HHHHH--HhhhcC
Q psy10461 1108 REWMRICFELLELLKAH-KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV--QERQNRVCTT---VAIAI--VAETCS 1179 (1359)
Q Consensus 1108 kE~mrIc~eLLelLkD~-~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~--qe~~VRv~ta---~AIg~--LAea~g 1179 (1359)
.++..+...|+.+|+.. ..++|+++++.+|.|+.. .|.... .+...... .......++- ...+. -.+.+.
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y 83 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYKHK-SIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYY 83 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHHHh-cccccCCccccccccccchhhHHhhccCCCchHHHH
Confidence 34556667778888875 689999999999999875 442211 01000000 0011111111 11111 234444
Q ss_pred ccccHHHHHHhcCCCCchhH-HHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHH
Q psy10461 1180 PFTVLPALMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 1242 (1359)
Q Consensus 1180 P~~VLPaLLnlLkDpE~nVR-~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqt 1242 (1359)
|..++.+|++.|+|+..... ..++.++-+||+..|..+..|+.+|+|.+.+.+...+...|.+
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~ 147 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREF 147 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHH
Confidence 55799999999999996644 5899999999999999899999999999999888766655554
No 81
>KOG2062|consensus
Probab=96.97 E-value=0.064 Score=67.48 Aligned_cols=275 Identities=17% Similarity=0.189 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCC
Q psy10461 922 MVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKS 999 (1359)
Q Consensus 922 ~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des 999 (1359)
-|+-++.-|=.+.|.+ +.+.|+..|.+.+.+. +=+|-+||. .+ ++..-..+..-+...+..++
T Consensus 398 GalyAlGLIhA~hG~~---------~~~yL~~~Lk~~~~e~v~hG~cLGlGL--a~----mGSa~~eiYe~lKevLy~D~ 462 (929)
T KOG2062|consen 398 GALYALGLIHANHGRG---------ITDYLLQQLKTAENEVVRHGACLGLGL--AG----MGSANEEIYEKLKEVLYNDS 462 (929)
T ss_pred chhhhhhccccCcCcc---------HHHHHHHHHHhccchhhhhhhhhhccc--hh----cccccHHHHHHHHHHHhccc
Confidence 3555566555566665 4567777777655444 333323332 22 33444677777888888766
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChH-HHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHH
Q psy10461 1000 AKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE-VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI 1078 (1359)
Q Consensus 1000 ~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pE-Vl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~L 1078 (1359)
...=.+|.-.++-+- ++.. ..+ .+.-++++-.|.--| +.+.+ +++--..+.|.+ .+.=|-|..+
T Consensus 463 AvsGEAAgi~MGl~m--lGt~-~~e----aiedm~~Ya~ETQHeki~RGl--~vGiaL~~ygrq------e~Ad~lI~el 527 (929)
T KOG2062|consen 463 AVSGEAAGIAMGLLM--LGTA-NQE----AIEDMLTYAQETQHEKIIRGL--AVGIALVVYGRQ------EDADPLIKEL 527 (929)
T ss_pred hhhhhHHHHhhhhHh--hCcC-cHH----HHHHHHHHhhhhhHHHHHHHH--HHhHHHHHhhhh------hhhHHHHHHH
Confidence 655444444333331 1100 011 122233333332222 22222 111112223322 2444566678
Q ss_pred hcCCCHHHHHHHHHHHHHH-HhhCCCchhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhh
Q psy10461 1079 LKNRHEKVQENCIDLVGRI-ADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNL 1156 (1359)
Q Consensus 1079 LkDr~~rVR~AAielIg~I-A~~g~e~v~~kE~mrIc~eLLel-LkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~L 1156 (1359)
+.|+.+..|.+-+-.+..- +..|. .+ .+..||.+ ..|.++.|||+|+-+||.+.-. .|+. ++..+..|
T Consensus 528 ~~dkdpilR~~Gm~t~alAy~GTgn----nk----air~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~~-~~s~V~lL 597 (929)
T KOG2062|consen 528 LRDKDPILRYGGMYTLALAYVGTGN----NK----AIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPEQ-LPSTVSLL 597 (929)
T ss_pred hcCCchhhhhhhHHHHHHHHhccCc----hh----hHHHhhcccccccchHHHHHHHHHheeeEec-Chhh-chHHHHHH
Confidence 8899999998877666542 22222 11 33344555 5788999999999999987654 4444 44455555
Q ss_pred h-cccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc
Q psy10461 1157 K-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 1235 (1359)
Q Consensus 1157 k-~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~ 1235 (1359)
. +-+.+||+.+++|+|+-|..-|-...+..|=.+.+|++--||.++|-+++.|.-.+.+..-+-+..+...+.+++.|.
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 4 456679999999999988877877667767677779999999999999988765554433333345556666677665
Q ss_pred C
Q psy10461 1236 D 1236 (1359)
Q Consensus 1236 D 1236 (1359)
.
T Consensus 678 h 678 (929)
T KOG2062|consen 678 H 678 (929)
T ss_pred h
Confidence 4
No 82
>KOG2032|consensus
Probab=96.94 E-value=0.34 Score=59.22 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=154.0
Q ss_pred HHHHHhhcccc-c--ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHH
Q psy10461 969 FGTIVNQLGKR-V--KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEV 1044 (1359)
Q Consensus 969 Lg~Lae~Lg~~-i--kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEV 1044 (1359)
++-+++..+.. + .+.+..++-.+...+.|++..+|..|+.+|++++..+..... ..-..++-.++..| .+.+.||
T Consensus 238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~-th~~~~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR-THKTTQLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH-HhHHHHHHHHHHHHhcCCccHH
Confidence 34445544443 2 266778888888999999999999999999999987431111 11122233333333 4446788
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC----CCchhhHHHHHHHHH---H
Q psy10461 1045 LGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG----PEYVSAREWMRICFE---L 1117 (1359)
Q Consensus 1045 l~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g----~e~v~~kE~mrIc~e---L 1117 (1359)
....+.+|..+....-...+.+++.++--++..++.+....+|.+++-++|.++..+ .++|-+ ++... |
T Consensus 317 ~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte----~v~k~~~~l 392 (533)
T KOG2032|consen 317 QLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTE----QVKKRLAPL 392 (533)
T ss_pred HHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHH----HHHhccccc
Confidence 877777777777776555666777777777788899999999999999999998843 233322 12222 2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHH-HHhhhcCcc--ccHHHHHHh----
Q psy10461 1118 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIA-IVAETCSPF--TVLPALMNE---- 1190 (1359)
Q Consensus 1118 LelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg-~LAea~gP~--~VLPaLLnl---- 1190 (1359)
+-.|.|.+..|=+|+-..+-.....++-+++- .+++..- +. +...+.+|- .-+..+.+. +++-.++..
T Consensus 393 llhl~d~~p~va~ACr~~~~~c~p~l~rke~~-~~~q~~l-d~---~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~ 467 (533)
T KOG2032|consen 393 LLHLQDPNPYVARACRSELRTCYPNLVRKELY-HLFQESL-DT---DMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHI 467 (533)
T ss_pred eeeeCCCChHHHHHHHHHHHhcCchhHHHHHH-HHHhhhh-HH---hHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhh
Confidence 33467777777555444433322222111111 1111100 11 111111111 101111111 233333332
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1191 YRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1191 LkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
++..=++||..+.+-...+...+-+..-.|. .++.-.|..+..|.-..++..|..++.-+.
T Consensus 468 f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 468 FSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred eecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 2344467887666655555555443322233 356667777778888888877777665543
No 83
>KOG0567|consensus
Probab=96.94 E-value=0.03 Score=63.57 Aligned_cols=193 Identities=18% Similarity=0.150 Sum_probs=124.0
Q ss_pred HhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC
Q psy10461 985 PQICGTILWRLNN--KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 985 ~qILpiIl~LL~D--es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
..-++++...+.| ..++||.+|+++++.++.- -++.++-++..|-..+|.-.|..|+..+-..-++.
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~~-----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP-----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcch-----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 3445666666665 5789999999999999721 14445555565666677777888888775543222
Q ss_pred C---C--------CCc-hhchHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHH
Q psy10461 1063 K---M--------TPP-IKDLLPRLTPILKNRHE--KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAI 1128 (1359)
Q Consensus 1063 ~---l--------sp~-l~~lLP~L~~LLkDr~~--rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sV 1128 (1359)
. . .|+ ...-+..+...+.|.+. -=|+.++-.+..++. + ..+..|.+-|.+...-.
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~---E--------eaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT---E--------EAINALIDGLADDSALF 203 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc---H--------HHHHHHHHhcccchHHH
Confidence 1 1 111 11123333333444332 235555555554422 1 02234456778887789
Q ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHhhhcc--cchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHH
Q psy10461 1129 RRATVNTFGYIAKAIGPHDVLATLLNNLKVQ--ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL 1206 (1359)
Q Consensus 1129 R~AAv~tLg~IAk~~GpedVlp~LL~~Lk~q--e~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaL 1206 (1359)
|..+.-.||+|-.. .-++.|...|... +..||.-++.|+|.||. +..+..|...++|+++-||..+.-+|
T Consensus 204 rhEvAfVfGQl~s~----~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----e~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSP----AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----EDCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred HHHHHHHHhhccch----hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999998653 4456666665533 23589999999999885 46889999999999999998887776
Q ss_pred H
Q psy10461 1207 S 1207 (1359)
Q Consensus 1207 s 1207 (1359)
.
T Consensus 276 d 276 (289)
T KOG0567|consen 276 D 276 (289)
T ss_pred H
Confidence 4
No 84
>KOG4413|consensus
Probab=96.91 E-value=0.2 Score=58.27 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=63.2
Q ss_pred HHHHHH---HHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhcc----CchhH-HHHHHHHHHHHhhcccc-cc----cc
Q psy10461 917 EQYRKM---VMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQE----QTTED-VVMLNGFGTIVNQLGKR-VK----PY 983 (1359)
Q Consensus 917 ~~VR~~---Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd----~~~eD-~v~lkaLg~Lae~Lg~~-ik----Py 983 (1359)
+.-|.. .+.++.++..+.-+. .+...+.|-+|. ....+ ...++.+|++++.++.. +. -.
T Consensus 54 enhrekttlcVscLERLfkakega--------hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvv 125 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEGA--------HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVV 125 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccch--------hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHh
Confidence 344544 677888887766665 233344444443 22222 46788899999999842 22 12
Q ss_pred hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy10461 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015 (1359)
Q Consensus 984 l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~ 1015 (1359)
-..|++.|+..+..++-.|..+|.+.|.+|+-
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999985
No 85
>KOG1820|consensus
Probab=96.91 E-value=0.029 Score=72.84 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=136.6
Q ss_pred HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhc-hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q psy10461 1023 EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKD-LLPRLTPILKNRHEKVQENCIDLVGRIADRG 1101 (1359)
Q Consensus 1023 ~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~-lLP~L~~LLkDr~~rVR~AAielIg~IA~~g 1101 (1359)
.+.+.++-+-|.+.+-+..--.+..++..+..+...-+.+ ....... +..-+...++|.+-.|-..++.+|..||...
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~-~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE-IVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc-cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 4566666666666664333223333445555554443311 2222223 3333333578999999999999999999854
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc-
Q psy10461 1102 PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP- 1180 (1359)
Q Consensus 1102 ~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP- 1180 (1359)
..-+... ...+...+++-|++.+.++|.++.+++..+++..+-.++...++..++..+.++|--+...+...-...++
T Consensus 327 r~~~~~~-~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 327 RPLFRKY-AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred chhhHHH-HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 4332222 22344566788999999999999999999999877789999999999988888887777666655444442
Q ss_pred -------cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh
Q psy10461 1181 -------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 1215 (1359)
Q Consensus 1181 -------~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~ 1215 (1359)
.+++|.++..-+|...+||.++..+++.+...+|+
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 28999999999999999999999999999999997
No 86
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.88 E-value=0.1 Score=64.17 Aligned_cols=275 Identities=13% Similarity=0.143 Sum_probs=166.2
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHH-hcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccc
Q psy10461 906 NRVVDDLKDENEQYRKMVMESIEKTMS-NLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPY 983 (1359)
Q Consensus 906 ~~Ll~~LKDes~~VR~~Aa~~L~~Ia~-~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPy 983 (1359)
+.|-.-++|.-+-|-.-+++.+..++. ++|++.++ +.+..|-.+|.....-- -.+++.+..++-..+..+
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--- 338 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--- 338 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee---
Confidence 334456778778888888888888775 34665333 34555555554432211 345666666665554432
Q ss_pred hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 984 l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
+---+-++.+.+|.+-.+-.-|...+-+.+..-. -+-|.++++.+..-+.|.|. ..++.++..++..+..+
T Consensus 339 -~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~----idrLv~~I~sfvhD~SD~FK---iI~ida~rsLsl~Fp~k- 409 (898)
T COG5240 339 -SVCNKEVESLISDENRTISTYAITTLLKTGTEET----IDRLVNLIPSFVHDMSDGFK---IIAIDALRSLSLLFPSK- 409 (898)
T ss_pred -eecChhHHHHhhcccccchHHHHHHHHHcCchhh----HHHHHHHHHHHHHhhccCce---EEeHHHHHHHHhhCcHH-
Confidence 1112336677788776555555444433321100 12233344445555555553 23456677776655322
Q ss_pred CCCchhchHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10461 1064 MTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1064 lsp~l~~lLP~L~~LL-kDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~ 1142 (1359)
-..+|--+..+| +..--....+++++|..+.+.-++. .++-+..+| ++..|-+. .+.+++.|+.+++-
T Consensus 410 ----~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s-kEraLe~LC----~fIEDcey--~~I~vrIL~iLG~E 478 (898)
T COG5240 410 ----KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS-KERALEVLC----TFIEDCEY--HQITVRILGILGRE 478 (898)
T ss_pred ----HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH-HHHHHHHHH----HHHhhcch--hHHHHHHHHHhccc
Confidence 335666666654 4455678889999998887644311 111133355 56666433 24578889999887
Q ss_pred hCc-----hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhc----CccccHHHHHHhcCCCCchhHHHHHHHHHHH
Q psy10461 1143 IGP-----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC----SPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209 (1359)
Q Consensus 1143 ~Gp-----edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~----gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~I 1209 (1359)
|| ...+.++.+.+--.++.+|.++..|+...|-.. .|..|..+|-++|+|.+-+||-++.-+|.+|
T Consensus 479 -gP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 479 -GPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred -CCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 44 245666776666666779999889998766444 4568999999999999999999888777554
No 87
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.88 E-value=0.0025 Score=59.39 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=68.8
Q ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCC
Q psy10461 1116 ELLELL-KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP 1194 (1359)
Q Consensus 1116 eLLelL-kD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDp 1194 (1359)
.|+..| ++..+.||..++.+|+.+ +...+++.|+..+++.+..+|..++.+++.+. ...+++.|...++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPALIKLLQDD 74 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHHHHHHTC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHcCC
Confidence 356777 778899999999999944 55688999999998888889999999999875 356999999999875
Q ss_pred -CchhHHHHHHHHH
Q psy10461 1195 -ELNVQNGVLKALS 1207 (1359)
Q Consensus 1195 -E~nVR~~VlkaLs 1207 (1359)
+..||..++++|+
T Consensus 75 ~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 75 DDEVVREAAAEALG 88 (88)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcC
Confidence 4557999988874
No 88
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.87 E-value=0.0079 Score=64.70 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccc
Q psy10461 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF 1275 (1359)
Q Consensus 1196 ~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~ 1275 (1359)
+.||.+++-+++.++-..+.. +...+|.+...|.|++..||.+|..++.+|... |+.-.-.+++..++-.+.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~----d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE----DMIKVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CceeehhhhhHHHHHHHc
Confidence 579999999999998887753 345667777789999999999999999998643 222222344455666668
Q ss_pred cCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhccccc---------cchhhHHHHHHhhhhccccchhhccc
Q psy10461 1276 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPAR---------KVRDVYWKIYNSLYIGGQDALISAYP 1340 (1359)
Q Consensus 1276 Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfhpA~---------kvrd~~WRvyn~~y~~~~~Alv~~~P 1340 (1359)
|++++|+..+..++..+....++..+.+.+..-+++... .-++.++++| .-|+.|+.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~--------~fll~~i~ 139 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIY--------KFLLDFID 139 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHH--------HHHHHHcC
Confidence 899999999999999998888999999999999887764 4577889999 66666655
No 89
>KOG1059|consensus
Probab=96.83 E-value=0.28 Score=61.88 Aligned_cols=233 Identities=15% Similarity=0.202 Sum_probs=127.8
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikP 982 (1359)
++...++..|.+.-+-+|+.|+-.+-++....+.. +. ..+..|.-.|.++.. .+..-+++.+|+-.-+.-++
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-lr-----~~FprL~EkLeDpDp--~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-LR-----PCFPRLVEKLEDPDP--SVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-Hh-----hhHHHHHHhccCCCc--hHHHHHHHHHHHHHhhCCcc
Confidence 34666778888999999999999999998866544 11 123333333444333 33333445555544444455
Q ss_pred chHhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH---
Q psy10461 983 YLPQICGTILWRLNN-KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV--- 1058 (1359)
Q Consensus 983 yl~qILpiIl~LL~D-es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v--- 1058 (1359)
|+ ++-|.+-.++.+ .+.=|=.....+.+.|+++ ++-+-.+|+++|.+.+.. +...+-+..+...++.+
T Consensus 216 yL-~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl-----EPRLgKKLieplt~li~s--T~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 216 YL-QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL-----EPRLGKKLIEPITELMES--TVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred cc-cccHHHHHHHhccCCCeehHHHHHHHhhcccc-----CchhhhhhhhHHHHHHHh--hHHHHHHHHHHHHheeehhc
Confidence 54 455666555554 2332222333333333322 234556677777777632 11111122222222222
Q ss_pred hCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10461 1059 IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 1138 (1359)
Q Consensus 1059 lG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~ 1138 (1359)
.|+..-+..++--+..|-.++.|.....++-..-+++.|+..-+..+..+. +-++..|.|...+||.-|.+.+-.
T Consensus 288 ~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 288 SGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred cCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchhHHHHHHHHHH
Confidence 122111112222333444467788888888888888888776665555431 223566888888999999998887
Q ss_pred HHHHhCchhHHHHHHHhh
Q psy10461 1139 IAKAIGPHDVLATLLNNL 1156 (1359)
Q Consensus 1139 IAk~~GpedVlp~LL~~L 1156 (1359)
|...=+--+|..+|+..+
T Consensus 363 mVskkNl~eIVk~LM~~~ 380 (877)
T KOG1059|consen 363 MVSKKNLMEIVKTLMKHV 380 (877)
T ss_pred HhhhhhHHHHHHHHHHHH
Confidence 776533345555665443
No 90
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.76 E-value=0.08 Score=66.20 Aligned_cols=265 Identities=14% Similarity=0.207 Sum_probs=121.3
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik 981 (1359)
+-+..+++...|++..||..|++.|..++..-+ + ...++.|.|..+|+..+..+ .++-++|..++..-+.-
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~-----~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~-- 130 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-E-----HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG-- 130 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T------HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-H-----HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--
Confidence 458888999999999999999999999998532 2 34478999999998655433 55555566665544321
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhH--HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKT-CQE--EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~-~~e--~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
-+..|+.-|..- ...+..||..+...|..--..+.. ... .++-..++..+...|.|.-.
T Consensus 131 -tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTa---------------- 192 (556)
T PF05918_consen 131 -TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTA---------------- 192 (556)
T ss_dssp -HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--H----------------
T ss_pred -HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccH----------------
Confidence 112222222211 245678999988776422111111 000 11112222222233333222
Q ss_pred hCCCCCCCchhchHHHHHHHhc------C-CCHHHHHHHHHHHHHHHhhCCCchhh--HHHHHHHHHHHHHHHhhHHHHH
Q psy10461 1059 IGMTKMTPPIKDLLPRLTPILK------N-RHEKVQENCIDLVGRIADRGPEYVSA--REWMRICFELLELLKAHKKAIR 1129 (1359)
Q Consensus 1059 lG~~~lsp~l~~lLP~L~~LLk------D-r~~rVR~AAielIg~IA~~g~e~v~~--kE~mrIc~eLLelLkD~~~sVR 1129 (1359)
+-+..++.+|+ + ....-|...+++|...|.....|-.. ..+.++.
T Consensus 193 -----------eEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli--------------- 246 (556)
T PF05918_consen 193 -----------EEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLI--------------- 246 (556)
T ss_dssp -----------HHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHH---------------
T ss_pred -----------HHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHH---------------
Confidence 12222222221 1 12333555666666666544332211 1122211
Q ss_pred HHHHHHHHHHHHHhCchhHHHH----HHHhhhcccchhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcC------CCCc
Q psy10461 1130 RATVNTFGYIAKAIGPHDVLAT----LLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYR------VPEL 1196 (1359)
Q Consensus 1130 ~AAv~tLg~IAk~~GpedVlp~----LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLk------DpE~ 1196 (1359)
.++-.++..++.......++.+ +|+.+..-....++-....++.++..|++. .+||.+.+.|. ..++
T Consensus 247 ~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~ 326 (556)
T PF05918_consen 247 SCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEP 326 (556)
T ss_dssp HHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-------
T ss_pred HHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1222222222222111122221 222222112233556667788888888763 67888888874 3456
Q ss_pred hhHHHHHHHHHHHHHHhhhhchh
Q psy10461 1197 NVQNGVLKALSFLFEYIGEMGKD 1219 (1359)
Q Consensus 1197 nVR~~VlkaLs~Iae~IG~~~kd 1219 (1359)
+.++..+.||-+.+..++....+
T Consensus 327 ~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 327 KLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp ---HHHHHHHHHHHHHHHTT-TH
T ss_pred cccchHhhHHHHHHHHHhhhCcc
Confidence 78899999999999888875444
No 91
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.73 E-value=0.07 Score=62.62 Aligned_cols=178 Identities=18% Similarity=0.208 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh--hCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc----
Q psy10461 1072 LPRLTPILKNRHEKVQENCIDLVGRIAD--RGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP---- 1145 (1359)
Q Consensus 1072 LP~L~~LLkDr~~rVR~AAielIg~IA~--~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp---- 1145 (1359)
|-..+..+.++....|++++..|-.+-. ...+++..+ .+.++..++..+|--...-+..|..+++.++-.+|+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4444455678889999999998887654 344444433 455666666667654445567889999999999873
Q ss_pred hhH----HHHHHHhhhcccc--hhHHHHHHHHHHHhhhcCcc--ccH---HHHH-----HhcC-CC---------CchhH
Q psy10461 1146 HDV----LATLLNNLKVQER--QNRVCTTVAIAIVAETCSPF--TVL---PALM-----NEYR-VP---------ELNVQ 1199 (1359)
Q Consensus 1146 edV----lp~LL~~Lk~qe~--~VRv~ta~AIg~LAea~gP~--~VL---PaLL-----nlLk-Dp---------E~nVR 1199 (1359)
+++ .+.|...++.... .+|..++.|+|.++=.++.. .+. ..+= ...+ |. .+.|.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 233 4444444443332 36778788999888766532 111 2221 1111 22 24588
Q ss_pred HHHHHHHHHHHHHhhh-hchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1200 NGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1200 ~~VlkaLs~Iae~IG~-~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
.+++.+-++++..++. ...+++...+|.|..+|.-.|..||-+|..+|.-|
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8889998999988876 34567778899999999888999999887776544
No 92
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.73 E-value=0.39 Score=60.32 Aligned_cols=228 Identities=11% Similarity=0.135 Sum_probs=107.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Q psy10461 1074 RLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLL 1153 (1359)
Q Consensus 1074 ~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL 1153 (1359)
.++.+|.|....||.++|..|+.|+....++ +.++.+.|..+|.......+.++-++|..|-+. .+...+..|+
T Consensus 63 a~~DLcEDed~~iR~~aik~lp~~ck~~~~~-----v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf 136 (556)
T PF05918_consen 63 AQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH-----VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ-DPKGTLTGLF 136 (556)
T ss_dssp HHHHHHT-SSHHHHHHHHHHGGGG--T--T------HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHhHHHHHHhHHHH-----HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence 4556777888999999999999888743333 345677778888877666667777777777665 5555556566
Q ss_pred Hhhh---cccchhHHHHHHHHHHH-----hhhcCc--c---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh-hchh
Q psy10461 1154 NNLK---VQERQNRVCTTVAIAIV-----AETCSP--F---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE-MGKD 1219 (1359)
Q Consensus 1154 ~~Lk---~qe~~VRv~ta~AIg~L-----Aea~gP--~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~-~~kd 1219 (1359)
+.+. ..+..+|.-+...+..- .+.+.| + .|+-.+.+.|+| +..+.+..+-.+-.-.+..|. ....
T Consensus 137 ~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D-VTaeEF~l~m~lL~~lk~~~~~~t~~ 215 (556)
T PF05918_consen 137 SQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD-VTAEEFELFMSLLKSLKIYGGKQTIE 215 (556)
T ss_dssp HHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHH
T ss_pred HHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhCccccccCChH
Confidence 5554 44556787755444321 122222 1 355566666766 222333322222111111111 0111
Q ss_pred hHHhHHHHHHHHH-hccC------hHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHH
Q psy10461 1220 YIYAVTPLLEDAL-MDRD------LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1220 YL~~VlPlLedaL-~D~D------~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaL 1292 (1359)
-..+++.++.+-. .|.+ ..+.+...-+..++.+...+.....-+..+...|+|.+-+-..+.+..++..+..+
T Consensus 216 g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~ 295 (556)
T PF05918_consen 216 GRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAEL 295 (556)
T ss_dssp HHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHH
Confidence 1235555555422 1221 12222211133334433333222233445567788877777777888888888888
Q ss_pred HHhhchHHHHHhHhhhh
Q psy10461 1293 RVALGPVRILQYVLQGL 1309 (1359)
Q Consensus 1293 r~aLG~~~ll~~vLpgL 1309 (1359)
+...|..- ...+|+.+
T Consensus 296 s~~~~~~d-~~~~L~~i 311 (556)
T PF05918_consen 296 SPFCGAQD-ARQLLPSI 311 (556)
T ss_dssp HTT----T-HHHHHHHH
T ss_pred cCCCCccc-HHHHHHHH
Confidence 77777544 34444433
No 93
>KOG2032|consensus
Probab=96.68 E-value=0.37 Score=58.84 Aligned_cols=243 Identities=11% Similarity=0.068 Sum_probs=132.8
Q ss_pred HHHHHHHhCCCCCC--CchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHH-HHHHHhhHHHH
Q psy10461 1052 LKAIVNVIGMTKMT--PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFEL-LELLKAHKKAI 1128 (1359)
Q Consensus 1052 L~aIa~vlG~~~ls--p~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eL-LelLkD~~~sV 1128 (1359)
..-+++..+...+. +.+++.+-.+..-.+|.+.++|..|+..|+..+.-++..+..+ ...+...+ ..++.+.+.+|
T Consensus 238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHH
Confidence 33444544433332 3455555555556678888999999999999998666444332 22233333 34455567889
Q ss_pred HHHHHHHHHHHHHHhCchhHHHHH-------HHhhhcccchhHHHHHHHHHHHhhhcCcc-------ccHH---HHHHhc
Q psy10461 1129 RRATVNTFGYIAKAIGPHDVLATL-------LNNLKVQERQNRVCTTVAIAIVAETCSPF-------TVLP---ALMNEY 1191 (1359)
Q Consensus 1129 R~AAv~tLg~IAk~~GpedVlp~L-------L~~Lk~qe~~VRv~ta~AIg~LAea~gP~-------~VLP---aLLnlL 1191 (1359)
-..++..|-.+....-..++.+++ .+.+.+.+.++|+++.+.||.++..+|.. .|.. .|+--+
T Consensus 317 ~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl 396 (533)
T KOG2032|consen 317 QLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL 396 (533)
T ss_pred HHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee
Confidence 999999998887766555544443 34445556679999999999999999631 1221 233345
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccCh-HHHHHHHHHHHHHHh-hhcCCC-chhHHhhhHH
Q psy10461 1192 RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL-VHRQTACATIKHMAL-GVYGFG-CEDALTHLLN 1268 (1359)
Q Consensus 1192 kDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~-~VRqtA~saIk~LAl-~~~glG-~EdaliHlLn 1268 (1359)
.||.|.| .++....+..|++.. |...+-..+.+.+ |.+. ..+.+-+..+.+++- +...++ .-+...|+++
T Consensus 397 ~d~~p~v----a~ACr~~~~~c~p~l--~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~ 469 (533)
T KOG2032|consen 397 QDPNPYV----ARACRSELRTCYPNL--VRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFS 469 (533)
T ss_pred CCCChHH----HHHHHHHHHhcCchh--HHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhhee
Confidence 6776633 344444566666521 1123333333333 4443 333333333333321 111111 1134457788
Q ss_pred hhhcccccCChHHHHHHHHHH-HHHHHhhchHHHH
Q psy10461 1269 YVWPNIFETSPHLVQAFMDAV-EGLRVALGPVRIL 1302 (1359)
Q Consensus 1269 lvlPnI~Etsp~Vi~~ileaL-eaLr~aLG~~~ll 1302 (1359)
.-|+++.+.-+-...++.+.+ +..+...|-..+.
T Consensus 470 sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~ 504 (533)
T KOG2032|consen 470 SSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLR 504 (533)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Confidence 888876654433333333332 4444444444443
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.66 E-value=0.0015 Score=56.52 Aligned_cols=54 Identities=26% Similarity=0.193 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1196 ~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
+.||.+++++|+.+++..+.....|+..++|.|..+++|.+..||..|+.+|..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 468999999999888888888888999999999999999999999998888764
No 95
>KOG0413|consensus
Probab=96.66 E-value=0.14 Score=65.83 Aligned_cols=137 Identities=14% Similarity=0.225 Sum_probs=95.3
Q ss_pred HHHHHHhhhcCc-----cccHHHHHHhcCCCC-chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHH
Q psy10461 1169 VAIAIVAETCSP-----FTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 1242 (1359)
Q Consensus 1169 ~AIg~LAea~gP-----~~VLPaLLnlLkDpE-~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqt 1242 (1359)
+++-.+|+-|-. ...+|+|.++|.-.+ .-||++++-+++.+|-.-..+..-|+ |.+...|.|.+..||..
T Consensus 950 ~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Yi----P~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 950 VGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYI----PMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhh----HHHHHHhcCchHHHHHH
Confidence 444455666632 258999999998655 55999999999888876666666666 44555677999999965
Q ss_pred HHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhcccc
Q psy10461 1243 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPA 1313 (1359)
Q Consensus 1243 A~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfhpA 1313 (1359)
..-.|..| .+.|+-.--..++-.++-.+.|.+++++.-.-.++..+-..-.|.+|.++....+||+-
T Consensus 1026 t~ilL~rL----Lq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln 1092 (1529)
T KOG0413|consen 1026 TIILLARL----LQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALN 1092 (1529)
T ss_pred HHHHHHHH----HhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHH
Confidence 44444433 12222111123444566667789999998888889888888888888888888888764
No 96
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.54 E-value=0.035 Score=63.41 Aligned_cols=233 Identities=15% Similarity=0.122 Sum_probs=133.9
Q ss_pred HHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccccch--HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh
Q psy10461 946 QLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKPYL--PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ 1021 (1359)
Q Consensus 946 ~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikPyl--~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~ 1021 (1359)
.-++.|+.+|+...+.. +.++.+++..+... +-+.++ ...++.|..++.++++.||.+|..++.+++...+..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~- 88 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ- 88 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence 34566777777544322 44444455433211 112222 246789999999999999999999999998766532
Q ss_pred HHhHHHHHHHHHHHHh--cccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1022 EEKLMGHLGVVLYEYL--GEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1022 e~~lL~~Ll~iLle~L--~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
..+...++-+.+.+ ...+.++-.+.+.+|..+.-.-..+ .-+..++|.++.++...+..+|..++..+-.++.
T Consensus 89 --~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~---~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 --EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH---HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred --HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh---hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 22333344344432 2235566555556666553222222 2256789999999988888999999999988876
Q ss_pred hCCCchhhHHHH--HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhh
Q psy10461 1100 RGPEYVSAREWM--RICFELLELLKAH-KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAE 1176 (1359)
Q Consensus 1100 ~g~e~v~~kE~m--rIc~eLLelLkD~-~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAe 1176 (1359)
.-. ..++++ +....++.++... ...+-.-++..|..|.+.+.++.... .++....-+....|+...
T Consensus 164 np~---~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~-------~~~~~~~~~L~~~~~e~~- 232 (254)
T PF04826_consen 164 NPD---MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVF-------VQDDFSEDSLFSLFGESS- 232 (254)
T ss_pred CHH---HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccccee-------ccccCCchhHHHHHccHH-
Confidence 211 111111 1233456666654 55666677778888877776642111 011111122222222221
Q ss_pred hcCccccHHHHHHhcCCCCchhHHHH
Q psy10461 1177 TCSPFTVLPALMNEYRVPELNVQNGV 1202 (1359)
Q Consensus 1177 a~gP~~VLPaLLnlLkDpE~nVR~~V 1202 (1359)
.+-.-|..+...|+++||..|
T Consensus 233 -----~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 233 -----QLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred -----HHHHHHHHHHcCCCHHHhhhc
Confidence 133446667778999999765
No 97
>KOG2137|consensus
Probab=96.53 E-value=0.039 Score=69.54 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=104.4
Q ss_pred HHHHH-hhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhh----cccchhHHHHHHHHHHHhhhcC-cc---ccHHHHH
Q psy10461 1118 LELLK-AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK----VQERQNRVCTTVAIAIVAETCS-PF---TVLPALM 1188 (1359)
Q Consensus 1118 LelLk-D~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk----~qe~~VRv~ta~AIg~LAea~g-P~---~VLPaLL 1188 (1359)
.++++ .....++-+.++.+..|.+...++++...+++.|. ..+.++...+...+..+++.+. ++ -|+|.|.
T Consensus 355 ~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~ 434 (700)
T KOG2137|consen 355 KPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLK 434 (700)
T ss_pred HHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhh
Confidence 34444 34567888999999999999999887777766653 3444445555666777787774 32 7999999
Q ss_pred Hhc-CCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHH-HhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhh
Q psy10461 1189 NEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA-LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL 1266 (1359)
Q Consensus 1189 nlL-kDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLeda-L~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHl 1266 (1359)
++. +.....|+.+++-|++.+.+.++. -..++.+.|++... ..|...+++. ..+...+++..+ .|.|-...|.
T Consensus 435 ~l~~~tt~~~vkvn~L~c~~~l~q~lD~--~~v~d~~lpi~~~~~~~dp~iv~~~--~~i~~~l~~~~~-~g~ev~~~~V 509 (700)
T KOG2137|consen 435 NLAFKTTNLYVKVNVLPCLAGLIQRLDK--AAVLDELLPILKCIKTRDPAIVMGF--LRIYEALALIIY-SGVEVMAENV 509 (700)
T ss_pred cchhcccchHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHhhcc-cceeeehhhh
Confidence 884 567788999999999999988875 22346777777654 3333333332 234444443333 2455555678
Q ss_pred HHhhhcccccCC
Q psy10461 1267 LNYVWPNIFETS 1278 (1359)
Q Consensus 1267 LnlvlPnI~Ets 1278 (1359)
+|++||......
T Consensus 510 lPlli~ls~~~~ 521 (700)
T KOG2137|consen 510 LPLLIPLSVAPS 521 (700)
T ss_pred hhhhhhhhhccc
Confidence 999999766543
No 98
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.49 E-value=0.0018 Score=56.06 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy10461 963 VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRI 1013 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~L 1013 (1359)
+.++.+||.+++..+..+++|+.++++.|..+++|+++.||.+|+.+|++|
T Consensus 5 ~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 5 RAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 456678888888888889999999999999999999999999999999875
No 99
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.49 E-value=0.026 Score=60.76 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHH
Q psy10461 1041 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL 1120 (1359)
Q Consensus 1041 ~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLel 1120 (1359)
+|.++.+++-+++.++.... ..+..++|.+...|+|.++.||++|+..+..+...+...+... +...++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~----l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ----LFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh----hhHHHHHH
Confidence 36788889899999888763 2367899999999999999999999999999987554333222 33455677
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhCchhHHH
Q psy10461 1121 LKAHKKAIRRATVNTFGYIAKAIGPHDVLA 1150 (1359)
Q Consensus 1121 LkD~~~sVR~AAv~tLg~IAk~~GpedVlp 1150 (1359)
|.|.+..||..|...|..+...-+++.+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~ 101 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYN 101 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 899999999999999999999866654433
No 100
>KOG1058|consensus
Probab=96.49 E-value=0.9 Score=57.89 Aligned_cols=349 Identities=15% Similarity=0.189 Sum_probs=181.3
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHhhccc--cccc
Q psy10461 906 NRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ-EQTTEDVVMLNGFGTIVNQLGK--RVKP 982 (1359)
Q Consensus 906 ~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLq-d~~~eD~v~lkaLg~Lae~Lg~--~ikP 982 (1359)
..|...|..++..++.-||+++-.+..+ | +.+++ |+-.++-+.. .++.+-.-++-.+-.++..... .+.+
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mln-G-e~~p~-----Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~ 95 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLN-G-EDLPS-----LLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLH 95 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHc-C-CCchH-----HHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHH
Confidence 3456788889999999999988665552 3 22222 3333332222 2211213333334444444432 2334
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
-+--++..+..=|++++..||-....+++++- +.+++..+.|.+..+|.--.+-|+++++-|+..|+.+. +
T Consensus 96 EMILvcna~RkDLQHPNEyiRG~TLRFLckLk-------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~ 166 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK-------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--E 166 (948)
T ss_pred HHHHHHHHHhhhccCchHhhcchhhhhhhhcC-------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--h
Confidence 45556677788899999999999999988873 46788889999999997667788999888888988874 2
Q ss_pred CCCCchhchHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10461 1063 KMTPPIKDLLPRLTPILKNRHEK-VQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1063 ~lsp~l~~lLP~L~~LLkDr~~r-VR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk 1141 (1359)
++-|...+++-.. +..+..+. .|.|.+.++..=-+++ ..|.--|.+-++-+ .+...-..++-+-..+.
T Consensus 167 ~L~pDapeLi~~f--L~~e~DpsCkRNAFi~L~~~D~ErA------l~Yl~~~idqi~~~---~~~LqlViVE~Irkv~~ 235 (948)
T KOG1058|consen 167 HLIPDAPELIESF--LLTEQDPSCKRNAFLMLFTTDPERA------LNYLLSNIDQIPSF---NDSLQLVIVELIRKVCL 235 (948)
T ss_pred hhcCChHHHHHHH--HHhccCchhHHHHHHHHHhcCHHHH------HHHHHhhHhhccCc---cHHHHHHHHHHHHHHHh
Confidence 3333222222222 33444443 3444443332200000 01111111111101 11222222222222222
Q ss_pred HhCch---hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccc---cHHHHHHhc-CCCCchhHHHHHHHHHHHHHHhh
Q psy10461 1142 AIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT---VLPALMNEY-RVPELNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1142 ~~Gpe---dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~---VLPaLLnlL-kDpE~nVR~~VlkaLs~Iae~IG 1214 (1359)
. .|. ..+.-|.+.|.+.+..|++-++-++-.++. .|.. --..++.++ +.++-||+..++-.|..+...--
T Consensus 236 ~-~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~ 312 (948)
T KOG1058|consen 236 A-NPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE 312 (948)
T ss_pred c-CHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH
Confidence 1 111 234455666666655555554433322221 1211 112334443 45677899988888877763332
Q ss_pred hhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccc---cCChHHHHHHHHHHHH
Q psy10461 1215 EMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF---ETSPHLVQAFMDAVEG 1291 (1359)
Q Consensus 1215 ~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~---Etsp~Vi~~ileaLea 1291 (1359)
....+|+-.|++ +|.-.|.+||.-+....-.|. .....++.+.++-..++..-- +....+|+.++.++-+
T Consensus 313 ~il~~l~mDvLr----vLss~dldvr~Ktldi~ldLv---ssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ 385 (948)
T KOG1058|consen 313 KILQGLIMDVLR----VLSSPDLDVRSKTLDIALDLV---SSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHA 385 (948)
T ss_pred HHHHHHHHHHHH----HcCcccccHHHHHHHHHHhhh---hhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence 234444444554 677788999976665544443 333455666666555553211 1233445555555533
No 101
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.44 E-value=1.2 Score=57.68 Aligned_cols=140 Identities=21% Similarity=0.233 Sum_probs=88.7
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
..+++.++..+...+..++++.=--+...+..-|.+ .-..++.++--|++.+..- ..+++.++.+ .+
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~------~lLavNti~kDl~d~N~~iR~~AlR~ls~l------~~ 121 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL------ALLAVNTIQKDLQDPNEEIRGFALRTLSLL------RV 121 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH------HHHHHHHHHhhccCCCHHHHHHHHHHHHhc------Ch
Confidence 344555565555666666666666665555533311 1223344444444444332 3344333221 24
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHH--HHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGH--LGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~--Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
+..+.++++.|..+++|+++.||+.||-++.++-.+=. .+... ++..+...+.|.+|.|+.+++.+|..+...
T Consensus 122 ~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 122 KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-----DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-----hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56678899999999999999999999999999975433 22222 344455667899999999998888888765
No 102
>KOG4653|consensus
Probab=96.41 E-value=0.075 Score=67.86 Aligned_cols=181 Identities=16% Similarity=0.143 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHH
Q psy10461 1113 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGP------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPA 1186 (1359)
Q Consensus 1113 Ic~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPa 1186 (1359)
-|.+-+..+-|.+-.||-+++..+..+.+.-.+ +.|+...+++++..+.++-+.+..++..+++. .|++++|-
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~e~il~d 806 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YPEDILPD 806 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cchhhHHH
Confidence 355556677888889999999999988884322 46788889999999999999988888899987 68889999
Q ss_pred HHHhcCC----CCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhH
Q psy10461 1187 LMNEYRV----PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA 1262 (1359)
Q Consensus 1187 LLnlLkD----pE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Eda 1262 (1359)
+...|.. +.++-|..|=.++..+....|+++..|...++.+...-+.|+|..||..+++++..++....+.+-+ .
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-F 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-H
Confidence 9987743 2246677788999999999999999999888887777788888888988888888776554544433 2
Q ss_pred Hhh----hHHhhhcccccCChHHHHHHHHHHHHHHHhhch
Q psy10461 1263 LTH----LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP 1298 (1359)
Q Consensus 1263 liH----lLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~ 1298 (1359)
+.. +++...+ +.++.++.++++-+..+-...|.
T Consensus 886 ~~ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 886 FHEVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccch
Confidence 322 2222223 57778888888888777676664
No 103
>KOG1020|consensus
Probab=96.31 E-value=3.9 Score=55.87 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHH
Q psy10461 945 EQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEE 1023 (1359)
Q Consensus 945 ~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~ 1023 (1359)
...+..|+..+.+..... .-+++++..+++.-+..+. ...+.-.+..++.|.+..||.+|.+++|+..-.. +
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-----~ 887 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-----P 887 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-----H
Confidence 345566666666544433 5677888888876654321 1455566777888889999999999888875333 2
Q ss_pred hHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 1024 KLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 1024 ~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
++..+..-.+.+.+.|.--.|+.-+|.-+..++..
T Consensus 888 e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 888 ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 44444555555666666666777777777777765
No 104
>KOG1078|consensus
Probab=96.25 E-value=2.9 Score=53.83 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=83.7
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-CCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG-PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g-~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
...++|.+-..+++++.+|..-++.++-.+.... .+..+ ....|-.+|+.++..+|-+|+.+|..+|.+.+.
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p------avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~- 315 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP------AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ- 315 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch------HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc-
Confidence 4467777777899999999999988888775522 22222 333445668889999999999999999998543
Q ss_pred hH---HHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc------ccHHHHHHhcCCCCchhHHHHHHHH
Q psy10461 1147 DV---LATLLNNLKVQERQNRVCTTVAIAIVAETCSPF------TVLPALMNEYRVPELNVQNGVLKAL 1206 (1359)
Q Consensus 1147 dV---lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~------~VLPaLLnlLkDpE~nVR~~VlkaL 1206 (1359)
.+ ...|-+...+. .|.++..||..+-++-... .-++.++..+.|.-.-|=..++.+|
T Consensus 316 ~v~~cN~elE~lItd~---NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sL 381 (865)
T KOG1078|consen 316 AVTVCNLDLESLITDS---NRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSL 381 (865)
T ss_pred cccccchhHHhhhccc---ccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHH
Confidence 22 12222222222 2777778887776654332 4566777777776655444444444
No 105
>KOG1061|consensus
Probab=96.22 E-value=0.23 Score=63.21 Aligned_cols=320 Identities=19% Similarity=0.213 Sum_probs=184.2
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikP 982 (1359)
.++..|-..+.|+++.|=-.|+.++..|...-... -...+..++++.++-.+.+- ..|.-+-.+..+++-.++.- -
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~-~~~~l~~~~~~~lL~al~ec--~EW~qi~IL~~l~~y~p~d~-~ 235 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSV-NLLELNPQLINKLLEALNEC--TEWGQIFILDCLAEYVPKDS-R 235 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC-CcccccHHHHHHHHHHHHHh--hhhhHHHHHHHHHhcCCCCc-h
Confidence 34666667777899999889999988888744321 11233345666666665542 22555544555555444322 1
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHH-------
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI------- 1055 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aI------- 1055 (1359)
-+.+|+.-+.+.+++.++.|=..+..++..+.+.+.. ....++.++-++|+..+.. -++.--.++..+.-+
T Consensus 236 ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~~ 313 (734)
T KOG1061|consen 236 EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPEI 313 (734)
T ss_pred hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChHH
Confidence 3578888899999999999999999999999887764 1234455555555544421 112111111111111
Q ss_pred --------------------------HHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHH
Q psy10461 1056 --------------------------VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE 1109 (1359)
Q Consensus 1056 --------------------------a~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE 1109 (1359)
..... ...+.+++..+..-..+.....-+.++.+||.+|....+
T Consensus 314 ~~~~~~~Ff~kynDPiYvK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~------ 383 (734)
T KOG1061|consen 314 LKVEIKVFFCKYNDPIYVKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ------ 383 (734)
T ss_pred HHhHhHeeeeecCCchhhHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh------
Confidence 11110 011223333333334454554455666777777764432
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhh-cccchhHHHHHHHHHHHhhhcCcc-ccHH
Q psy10461 1110 WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPF-TVLP 1185 (1359)
Q Consensus 1110 ~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk-~qe~~VRv~ta~AIg~LAea~gP~-~VLP 1185 (1359)
+.+....||+++.-.+..|=..++..+..|...++. +.+.+.+-.++. .++.--|-+..--+|.-++.+.-. ++|-
T Consensus 384 ~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~ 463 (734)
T KOG1061|consen 384 SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLE 463 (734)
T ss_pred hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHH
Confidence 222444566777655555545556666666665543 345555533333 233344555455566666666433 7999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc-ChHHHH
Q psy10461 1186 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR-DLVHRQ 1241 (1359)
Q Consensus 1186 aLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~-D~~VRq 1241 (1359)
.|+...+|....||...+.+.-.+|-.-+...++.+..+++. +..|. +.++|-
T Consensus 464 ~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~---~~~d~~~~dlrD 517 (734)
T KOG1061|consen 464 SFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPL---ATADTDNPDLRD 517 (734)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhh---hhccccChhhhh
Confidence 999999999999999999988666555554556666666663 34444 356664
No 106
>KOG1243|consensus
Probab=96.15 E-value=0.034 Score=69.85 Aligned_cols=234 Identities=17% Similarity=0.185 Sum_probs=152.5
Q ss_pred HHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHH
Q psy10461 967 NGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLG 1046 (1359)
Q Consensus 967 kaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~ 1046 (1359)
+.+...++.+++.+ +...++|.++..+.=.+ ++.+.+.-+-..-+.....++-..+++.|...++--+.-++.
T Consensus 276 ~~L~~~l~~~pe~i--~~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~ 348 (690)
T KOG1243|consen 276 SGLIDRLDNFPEEI--IASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRL 348 (690)
T ss_pred HHHHHHHhhhhHHH--HHHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHH
Confidence 33334444444332 34677777776665333 344444444333222222345566788888887666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHH
Q psy10461 1047 SILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK 1126 (1359)
Q Consensus 1047 siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~ 1126 (1359)
..|.-+......+..+.+ ..+++|.+..-+.|.++-+|+..+..+..||.......-.-|+++....+.+ |.+.
T Consensus 349 ~LL~~i~~~i~~Lt~~~~---~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~---d~~~ 422 (690)
T KOG1243|consen 349 LLLQYIEKYIDHLTKQIL---NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQP---DEHG 422 (690)
T ss_pred HHHHhHHHHhhhcCHHhh---cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc---cccC
Confidence 888888888888754433 4589999999999999999999999999999854433222335554433222 6778
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHH----HhhhcccchhHHHHHHHHHHHhhhcCc----cccHHHHHHhcCCCCchh
Q psy10461 1127 AIRRATVNTFGYIAKAIGPHDVLATLL----NNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNV 1198 (1359)
Q Consensus 1127 sVR~AAv~tLg~IAk~~GpedVlp~LL----~~Lk~qe~~VRv~ta~AIg~LAea~gP----~~VLPaLLnlLkDpE~nV 1198 (1359)
.||--.+-++|.|+....+...-..|. ..+++.-..-|.++..++....+.+.- ..|+|.+.-.+-|++..|
T Consensus 423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence 899999999999988766543212221 123333334588866666665554432 169999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy10461 1199 QNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1199 R~~VlkaLs~Iae~I 1213 (1359)
|..+.+++..+.+.+
T Consensus 503 r~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 503 RDTAEKAIRQFLEKL 517 (690)
T ss_pred hhHHHHHHHHHHhhh
Confidence 999999986655444
No 107
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.13 E-value=0.0014 Score=78.77 Aligned_cols=32 Identities=41% Similarity=0.970 Sum_probs=29.2
Q ss_pred cccccccchhhhhhhccCCCCCCcccchhhhh
Q psy10461 830 IGCSMFAPTVWHLWIYTRSANANFYFGVTLAF 861 (1359)
Q Consensus 830 ~~~~lL~P~f~~lWi~~~sgNANFyyai~LV~ 861 (1359)
..+.+|.|.|||+|+++|+|||||||++++||
T Consensus 351 l~~~~L~p~~~~lWi~~gsgNaNFfya~tLv~ 382 (382)
T PF06728_consen 351 LYALLLSPIFYHLWIYLGSGNANFFYAITLVY 382 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcceeeeeeeC
Confidence 44777899999999999999999999999986
No 108
>KOG2956|consensus
Probab=95.97 E-value=0.36 Score=58.71 Aligned_cols=193 Identities=9% Similarity=0.122 Sum_probs=136.4
Q ss_pred hHhHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcc
Q psy10461 901 ASEIINRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLG 977 (1359)
Q Consensus 901 ~~eiI~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg 977 (1359)
....+..++..+.+. -..-|+.|+..|-.+.-+-+-..|.+. ...|+..++-.+.+..++- ..+++.+..++..-.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 345577777777744 667799999988888775555556543 3345555666666644433 788999999999999
Q ss_pred cccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy10461 978 KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN 1057 (1359)
Q Consensus 978 ~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~ 1057 (1359)
.++..+..-.+--++...+|....|-..|++.+..+.....+ ..-+..+.+.++. +++| ....++..+-.+.+
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P---~~~I~~i~~~Ilt---~D~~-~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP---LQCIVNISPLILT---ADEP-RAVAVIKMLTKLFE 435 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc---hhHHHHHhhHHhc---Ccch-HHHHHHHHHHHHHh
Confidence 988888888888888888888777777777776666544432 1223344454444 3333 44557778888888
Q ss_pred HhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hC
Q psy10461 1058 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD-RG 1101 (1359)
Q Consensus 1058 vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g 1101 (1359)
.+..+.+.+-+.++.|.++.-..+.+..||..|+-++-.+.. .|
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 887666666667778888878889999999999999988876 45
No 109
>KOG0891|consensus
Probab=95.96 E-value=0.47 Score=67.74 Aligned_cols=357 Identities=17% Similarity=0.222 Sum_probs=188.2
Q ss_pred hHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchh---H--HHHHHHHHHHHhh
Q psy10461 901 ASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE---D--VVMLNGFGTIVNQ 975 (1359)
Q Consensus 901 ~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~e---D--~v~lkaLg~Lae~ 975 (1359)
-.+.+..++..+.|+.-.+|..++..+..++.. .|..+. +.+....+....+..-. . .....-...+...
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~-~~a~vl----~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~ 637 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSY-NPAYVL----PSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS 637 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccc-cHHHHh----HHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence 355677788899999999999999988876662 233222 23333333333221110 0 1111222333333
Q ss_pred cccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q psy10461 976 LGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI 1055 (1359)
Q Consensus 976 Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aI 1055 (1359)
....+.+|+..++-.+...+.|.++.|-..+..+++.|+.+-+
T Consensus 638 ~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g------------------------------------- 680 (2341)
T KOG0891|consen 638 SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG------------------------------------- 680 (2341)
T ss_pred HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-------------------------------------
Confidence 3344667777777777777777777665555566555554443
Q ss_pred HHHhCCCCCCCchhchHHHHHHHhcC-CCHHHHHHHHHHHHHHHh-hCCCchhhHHHHHHHHHHHHHHHhh-HHHHHHHH
Q psy10461 1056 VNVIGMTKMTPPIKDLLPRLTPILKN-RHEKVQENCIDLVGRIAD-RGPEYVSAREWMRICFELLELLKAH-KKAIRRAT 1132 (1359)
Q Consensus 1056 a~vlG~~~lsp~l~~lLP~L~~LLkD-r~~rVR~AAielIg~IA~-~g~e~v~~kE~mrIc~eLLelLkD~-~~sVR~AA 1132 (1359)
. .+..+.+.+++.+...+.| .+..-|+++...++.+.. .|....+......+...+...++.. ...+|+++
T Consensus 681 -----~-~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~ 754 (2341)
T KOG0891|consen 681 -----E-EMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREA 754 (2341)
T ss_pred -----c-hhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHH
Confidence 1 1112233344444433222 334567888889998876 4443233332333444445555543 55799999
Q ss_pred HHHHHHHHHHhCchhH-HHHHHHhhhc---ccch--hHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhH-HHHHHH
Q psy10461 1133 VNTFGYIAKAIGPHDV-LATLLNNLKV---QERQ--NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQ-NGVLKA 1205 (1359)
Q Consensus 1133 v~tLg~IAk~~GpedV-lp~LL~~Lk~---qe~~--VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR-~~Vlka 1205 (1359)
++.+|..+.. .+-.. ......+++. ..+. .+.....++..=.+...|...+-.++..++|+.-..+ ..+..+
T Consensus 755 v~~~g~~g~~-d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a 833 (2341)
T KOG0891|consen 755 IRLLGLLGAL-DPYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQA 833 (2341)
T ss_pred HHHhhhhccc-chhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhc
Confidence 9999954432 22110 0001102221 1111 1111111111101333455667789999999976655 588888
Q ss_pred HHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHh--hhcCCCchhHHhhhHHhhhcccccCChHHHH
Q psy10461 1206 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL--GVYGFGCEDALTHLLNYVWPNIFETSPHLVQ 1283 (1359)
Q Consensus 1206 Ls~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl--~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~ 1283 (1359)
+-.++...|..+..|+.+|+|.+-.........-+.+.-.-+..+-. .+...-+-..+.+++-.+|+ .+..++.
T Consensus 834 ~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~----~~~~l~~ 909 (2341)
T KOG0891|consen 834 IMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWP----PDTSLQI 909 (2341)
T ss_pred hhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhh----hHHHHHH
Confidence 89999999998999999999976654432222222111111111100 00000111223344444444 3445666
Q ss_pred HHHHHHHHHHHhhchHH--HHHhHhhhhc
Q psy10461 1284 AFMDAVEGLRVALGPVR--ILQYVLQGLF 1310 (1359)
Q Consensus 1284 ~ileaLeaLr~aLG~~~--ll~~vLpgLf 1310 (1359)
.++..++.++.+++.++ .++..++..+
T Consensus 910 ~~~~l~~~i~~~l~~~f~~~l~~~~~~~l 938 (2341)
T KOG0891|consen 910 TIISLIEDIAVALGGEFKKYLPELLPTML 938 (2341)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhccchh
Confidence 77888889999988765 3444444333
No 110
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.95 E-value=0.85 Score=59.10 Aligned_cols=331 Identities=15% Similarity=0.188 Sum_probs=161.6
Q ss_pred ccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhc
Q psy10461 898 LVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQL 976 (1359)
Q Consensus 898 klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~L 976 (1359)
|+-...++..|+..|..++..+...++..|.+++-. + +....-.+.-++..|+.+++....+- ..+++.+..+...-
T Consensus 285 kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~ 362 (708)
T PF05804_consen 285 KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-K-ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP 362 (708)
T ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-H-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH
Confidence 333455688899999999999999999999988731 1 01111111134555666666543322 55554444443322
Q ss_pred ccccccchHh--HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh---hhhHHhHHHHHHHHHHHHhcc-cChHHHHHHHH
Q psy10461 977 GKRVKPYLPQ--ICGTILWRLNNKSAKVRQQAADLISRIAVVMK---TCQEEKLMGHLGVVLYEYLGE-EYPEVLGSILG 1050 (1359)
Q Consensus 977 g~~ikPyl~q--ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~---~~~e~~lL~~Ll~iLle~L~D-e~pEVl~siL~ 1050 (1359)
.++..+-+ ++|.+..++.|++ .|.-+..++-.++..=. .....+.++.++..|++.-.+ ...+.+..+++
T Consensus 363 --~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 363 --ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred --HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 23433333 6777777887654 34445555555543111 000112233333322222111 11222221111
Q ss_pred --HHHHHHHHhCCCCCCCchhchHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHH
Q psy10461 1051 --ALKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA 1127 (1359)
Q Consensus 1051 --AL~aIa~vlG~~~lsp~l~~lLP~L~~L-LkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~s 1127 (1359)
.-...++.+- -..-|+.++.. ++.+.+. .+..|..|+...+. .+.-.......|+..++...
T Consensus 439 La~~~rnaqlm~-------~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~--~k~~f~~~i~~L~~~v~~~~-- 503 (708)
T PF05804_consen 439 LALNKRNAQLMC-------EGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGP--LKELFVDFIGDLAKIVSSGD-- 503 (708)
T ss_pred HhcCHHHHHHHH-------hcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCch--HHHHHHHHHHHHHHHhhcCC--
Confidence 1111112110 01345555553 2333322 23444555442211 00001112223333343321
Q ss_pred HHHHHHHHHHHHHHHhCch----------hHHHHHHHhhhcc--cchhHHHHHHHHHHHhh--hcCc----cccHHHHHH
Q psy10461 1128 IRRATVNTFGYIAKAIGPH----------DVLATLLNNLKVQ--ERQNRVCTTVAIAIVAE--TCSP----FTVLPALMN 1189 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~Gpe----------dVlp~LL~~Lk~q--e~~VRv~ta~AIg~LAe--a~gP----~~VLPaLLn 1189 (1359)
-....++++|.++..--++ .+++.|.+.|... +..+-+-+...+|.+|- .|++ ..+++.|+.
T Consensus 504 ~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~ 583 (708)
T PF05804_consen 504 SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIE 583 (708)
T ss_pred cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHH
Confidence 2256777777777753221 3455566666522 22345555566676652 2322 378999999
Q ss_pred hcCCCC--chhHHHHHHHHHHHHHHhhhhchhhH---HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1190 EYRVPE--LNVQNGVLKALSFLFEYIGEMGKDYI---YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1190 lLkDpE--~nVR~~VlkaLs~Iae~IG~~~kdYL---~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
+|+... -+.-..++.++..+.-+ ++ ..+++ ..+...|.+++.|.+..+|+++-.++..|+
T Consensus 584 LL~~kqeDdE~VlQil~~f~~ll~h-~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 584 LLNAKQEDDEIVLQILYVFYQLLFH-EE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHcC-hH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 997533 33344455555433322 22 22333 467788999999999999998887776665
No 111
>KOG4653|consensus
Probab=95.95 E-value=0.4 Score=61.64 Aligned_cols=175 Identities=15% Similarity=0.242 Sum_probs=128.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh---CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHH
Q psy10461 1076 TPILKNRHEKVQENCIDLVGRIADR---GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL 1152 (1359)
Q Consensus 1076 ~~LLkDr~~rVR~AAielIg~IA~~---g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~L 1152 (1359)
...+.|...-+|..++..+..+++. +.--..+ ++....+++|+|...-|--.|++.+..+++. =|+++++.+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~e----kvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~e~il~dL 807 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGE----KVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YPEDILPDL 807 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHH----HHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cchhhHHHH
Confidence 3345677777888888888877762 2111112 2444558999999888999999999999998 467899988
Q ss_pred HHhhhcccc----hhHHHHHHHHHHHhhhcCc----c--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHH
Q psy10461 1153 LNNLKVQER----QNRVCTTVAIAIVAETCSP----F--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY 1222 (1359)
Q Consensus 1153 L~~Lk~qe~----~VRv~ta~AIg~LAea~gP----~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~ 1222 (1359)
.+..-+..+ ..|+-+-.||+.++.+.|+ | -++..+|...+||+-.-|-..|..++.++....-...+.++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 774332211 1355556888888888886 2 68999999999998888888888888888877655677888
Q ss_pred hHHHHHHHHH-hccChHHHHHHHHHHHHHHhhhcCCC
Q psy10461 1223 AVTPLLEDAL-MDRDLVHRQTACATIKHMALGVYGFG 1258 (1359)
Q Consensus 1223 ~VlPlLedaL-~D~D~~VRqtA~saIk~LAl~~~glG 1258 (1359)
+++-++..+. .|.+..+|.+|.-+|.++- ++.|
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL---~~tg 921 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELL---NGTG 921 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHH---hccc
Confidence 8888777754 4778899998888877764 5555
No 112
>KOG0168|consensus
Probab=95.84 E-value=1.1 Score=57.93 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=85.9
Q ss_pred hHhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHhCC
Q psy10461 984 LPQICGTILWRLNNK-SAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE-EYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 984 l~qILpiIl~LL~De-s~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D-e~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
+..++|.|..+|+++ +..+-..||.+|..+++++.......+=.+.+|+|.+.|-. +|=||.-.++.||..|..+=+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 477888888899885 67888899999999999987433211112367888887733 4777888888888887665321
Q ss_pred CCCCC-chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-CchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10461 1062 TKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 1139 (1359)
Q Consensus 1062 ~~lsp-~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~-e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~I 1139 (1359)
.-+.. -+..+|. .+..+ +--++++|+.+...++..-. +.+. -+|....-|.++|..+.+.+=+.++-+|-.|
T Consensus 289 AiL~AG~l~a~Ls-ylDFF---Si~aQR~AlaiaaN~Cksi~sd~f~--~v~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 289 AILQAGALSAVLS-YLDFF---SIHAQRVALAIAANCCKSIRSDEFH--FVMEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred HHHhcccHHHHHH-HHHHH---HHHHHHHHHHHHHHHHhcCCCccch--HHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 11110 0000110 00011 12345555555555544221 1111 1344444444556555444445556666666
Q ss_pred HHHhCc
Q psy10461 1140 AKAIGP 1145 (1359)
Q Consensus 1140 Ak~~Gp 1145 (1359)
+..|-.
T Consensus 363 ~d~f~h 368 (1051)
T KOG0168|consen 363 ADGFQH 368 (1051)
T ss_pred HHhccc
Confidence 665543
No 113
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.72 E-value=0.014 Score=45.31 Aligned_cols=30 Identities=37% Similarity=0.399 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVV 1016 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~v 1016 (1359)
|+|.++.+++|+++.||.+|+.+++.|++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999864
No 114
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.62 E-value=2.5 Score=48.82 Aligned_cols=231 Identities=13% Similarity=0.156 Sum_probs=129.4
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccchHhH
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQI 987 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qI 987 (1359)
|=..|-++++.+|..|++.|..+...+++..+...-...+++-+.-.+.|... ...+++++..++ ............+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~l~gl~~L~-~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPALKGLLALV-KMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHHHHHHHHHH-hCcCCChhhHHHH
Confidence 44578899999999999999999999998876664344444444444432111 133467777777 4444444445566
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhCCCCC
Q psy10461 988 CGTILWRLN--NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNVIGMTKM 1064 (1359)
Q Consensus 988 LpiIl~LL~--Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEVl~siL~AL~aIa~vlG~~~l 1064 (1359)
+..+..... --.+.+|..+=+++..+...-.... ..+-...+.-+.+.+ ||.+|.-+..+...+..+......
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--- 157 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--- 157 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---
Confidence 665554333 2456778777777777755432111 111122333344444 777887777676777776666542
Q ss_pred CCchhchHHHHHHHh--------c---CCCHHH-HHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10461 1065 TPPIKDLLPRLTPIL--------K---NRHEKV-QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRAT 1132 (1359)
Q Consensus 1065 sp~l~~lLP~L~~LL--------k---Dr~~rV-R~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AA 1132 (1359)
.++...++.++ + |..-.| |+.....+...-. +...+.+. .+.-+++=|.+....++..+
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~----~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPF----AFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHH----HHHHHHHHHcCCCcHHHHHH
Confidence 23344444421 1 211111 2222222222111 11111111 22233455666677788999
Q ss_pred HHHHHHHHHHhCchhHHHHHH
Q psy10461 1133 VNTFGYIAKAIGPHDVLATLL 1153 (1359)
Q Consensus 1133 v~tLg~IAk~~GpedVlp~LL 1153 (1359)
.++|......+|++.+.+++.
T Consensus 229 L~tL~~c~~~y~~~~~~~~~~ 249 (262)
T PF14500_consen 229 LQTLKACIENYGADSLSPHWS 249 (262)
T ss_pred HHHHHHHHHHCCHHHHHHHHH
Confidence 999999999999887777653
No 115
>KOG2956|consensus
Probab=95.57 E-value=0.54 Score=57.23 Aligned_cols=152 Identities=14% Similarity=0.239 Sum_probs=93.5
Q ss_pred chhchHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-CCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHh
Q psy10461 1067 PIKDLLPRLTPILKN-RHEKVQENCIDLVGRIADRG-PEYVSAREWMRICFELLELLKAHKKAIRRATVN-TFGYIAKAI 1143 (1359)
Q Consensus 1067 ~l~~lLP~L~~LLkD-r~~rVR~AAielIg~IA~~g-~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~-tLg~IAk~~ 1143 (1359)
+..++|-.+++++.| ++...+.-|...|..+...- ..+++.- .+-+| .+|+.-+|.++.|=+.|.+ ++-.++..
T Consensus 326 ~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst-E~ai~-K~Leaa~ds~~~v~~~Aeed~~~~las~- 402 (516)
T KOG2956|consen 326 HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST-EIAIC-KVLEAAKDSQDEVMRVAEEDCLTTLASH- 402 (516)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH-HHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHhh-
Confidence 355677778888887 78888899999999987743 3334433 23344 4456677877765444444 45555555
Q ss_pred CchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc-------cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhh-h
Q psy10461 1144 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG-E 1215 (1359)
Q Consensus 1144 GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP-------~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG-~ 1215 (1359)
.|...+..+-+.+...+...-+++...+-.|.+.+.. .++.|.++..|..++..||..++-||-.|...+| +
T Consensus 403 ~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 403 LPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred CchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 4433222222222212222112222233333333332 2799999999999999999999999999999999 4
Q ss_pred hchhhH
Q psy10461 1216 MGKDYI 1221 (1359)
Q Consensus 1216 ~~kdYL 1221 (1359)
....|+
T Consensus 483 ~mePhL 488 (516)
T KOG2956|consen 483 EMEPHL 488 (516)
T ss_pred hhhhHh
Confidence 444444
No 116
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.55 E-value=1.2 Score=55.42 Aligned_cols=172 Identities=15% Similarity=0.130 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh
Q psy10461 942 RLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTC 1020 (1359)
Q Consensus 942 ~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~ 1020 (1359)
+++..++.+++-.+......+ .-++..+..+....+.-=....+.++.-|..++=|.++.||.+|..+++.+-+.-..
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n- 165 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN- 165 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC-
Confidence 344445555554444333333 345666666666665422334577778888889999999999999999998644331
Q ss_pred hHHhHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHH-HHHHHHHH
Q psy10461 1021 QEEKLMGHLGVVLYEYLG-EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENC-IDLVGRIA 1098 (1359)
Q Consensus 1021 ~e~~lL~~Ll~iLle~L~-De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AA-ielIg~IA 1098 (1359)
+++.+.++ |...+. |-..||+++++..+.. ..+-+|-+...++|-+-.-|+.+ ...+++|+
T Consensus 166 -een~~~n~---l~~~vqnDPS~EVRr~allni~v-------------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iG 228 (885)
T COG5218 166 -EENRIVNL---LKDIVQNDPSDEVRRLALLNISV-------------DNSTYPCILERARDVSGANRRMVYERCLPRIG 228 (885)
T ss_pred -hHHHHHHH---HHHHHhcCcHHHHHHHHHHHeee-------------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhc
Confidence 23433333 333343 3344677765432211 12457788888888776655444 45677888
Q ss_pred hhCCCchhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Q psy10461 1099 DRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFG 1137 (1359)
Q Consensus 1099 ~~g~e~v~~kE~mrIc~eLLel-LkD~~~sVR~AAv~tLg 1137 (1359)
+.+...+.++ +. +++| |.|...+||.|+++.+.
T Consensus 229 d~~~lsi~kr----i~--l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 229 DLKSLSIDKR----IL--LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred chhhccccce----eh--hhhhcchhhhhhHHHHHHHHHH
Confidence 7766555554 22 4677 78888999999887654
No 117
>KOG2137|consensus
Probab=95.54 E-value=0.24 Score=62.73 Aligned_cols=208 Identities=17% Similarity=0.164 Sum_probs=125.5
Q ss_pred HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC
Q psy10461 1023 EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK-NRHEKVQENCIDLVGRIADRG 1101 (1359)
Q Consensus 1023 ~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk-Dr~~rVR~AAielIg~IA~~g 1101 (1359)
--+..+++|.|.+.|.. ...+..++-.+-.|+..... ..+...++|.|.++++ -..-.+..-+++.+..|..+-
T Consensus 307 rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt 381 (700)
T KOG2137|consen 307 RVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKT 381 (700)
T ss_pred HHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccch---hhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhC
Confidence 34566788888888722 22222222222233332211 1234578899998887 444456677777777777643
Q ss_pred -CCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhh-----cccchhHHHHHHHHHHHh
Q psy10461 1102 -PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK-----VQERQNRVCTTVAIAIVA 1175 (1359)
Q Consensus 1102 -~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk-----~qe~~VRv~ta~AIg~LA 1175 (1359)
.+++..+ +..-|..-++|..-.|+..++..+..+++.++-..+-..|++.++ ..+-.+++.+..||+.+.
T Consensus 382 ~~e~~~~~----IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 382 PPEEVKEK----ILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred ChHHHHHH----HHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 3333322 332233446777778999999999999999876544444444433 333458899999999999
Q ss_pred hhcCcc---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHH
Q psy10461 1176 ETCSPF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHR 1240 (1359)
Q Consensus 1176 ea~gP~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VR 1240 (1359)
+.|..+ +.++.++.+.+..++.+-.+.++....++-..- .+++.+ +.|+|++.-+.......+.
T Consensus 458 q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 458 QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SGVEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cceeeehhhhhhhhhhhhhcccccHH
Confidence 999766 455566777777777777666666543332221 112333 6788877766554444443
No 118
>KOG1078|consensus
Probab=95.51 E-value=7.8 Score=50.18 Aligned_cols=257 Identities=16% Similarity=0.139 Sum_probs=143.3
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHH--HHHHHHHHHHHH
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLG--SILGALKAIVNV 1058 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~--siL~AL~aIa~v 1058 (1359)
.....++++++...+.++..+|=.+||..+..+....... +..-+..|...+. +|.+.. +.+-.|..++..
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~-----l~pavs~Lq~fls--sp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE-----LAPAVSVLQLFLS--SPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh-----cchHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHh
Confidence 5667889999999999999999999999999887654421 1112222222221 233222 233333333332
Q ss_pred hC---------CCC-CCCchhc-hHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCCCchh--hHHHHHHHH---------
Q psy10461 1059 IG---------MTK-MTPPIKD-LLPRLTPILKNRHEKVQENCIDLVGRIAD-RGPEYVS--AREWMRICF--------- 1115 (1359)
Q Consensus 1059 lG---------~~~-lsp~l~~-lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~e~v~--~kE~mrIc~--------- 1115 (1359)
.- .+. ++...+. --+.++-+++-....-....+..|..++. ...+|.- ..-+.-+|.
T Consensus 313 ~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~ 392 (865)
T KOG1078|consen 313 HPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM 392 (865)
T ss_pred CCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence 11 000 0110111 12334446665544433444455555443 2333311 000111221
Q ss_pred --HHHHHHHhh-HHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhc----CccccHHH
Q psy10461 1116 --ELLELLKAH-KKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC----SPFTVLPA 1186 (1359)
Q Consensus 1116 --eLLelLkD~-~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~----gP~~VLPa 1186 (1359)
-|-.+|++. -.+-.++.++++..|.+.... +..+..|-..+.+.+ .+.-+..-+..++..+ .|..-+..
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~ 470 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRF 470 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHH
Confidence 122456553 446678889999988886432 234444444333222 2444444456666555 24456777
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1187 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1187 LLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
+.|..-=.+..||-++..+|..+. .+ .......|.-+|.+.++|+|..||..|.-.++.+
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg--~~--~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFG--AQ--DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHh--cC--CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 778777778889999999998776 22 2333467888999999999999997776666665
No 119
>KOG2021|consensus
Probab=95.43 E-value=7 Score=50.34 Aligned_cols=431 Identities=16% Similarity=0.197 Sum_probs=212.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHH-hcCccchhhhHHHHHHHHH---H---Hhh-ccCchhHHHHHHHHHHHHhh
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMS-NLGAADIDSRLEEQLIDGI---L---YAF-QEQTTEDVVMLNGFGTIVNQ 975 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~-~LGpe~l~~~L~~~Lld~L---L---plL-qd~~~eD~v~lkaLg~Lae~ 975 (1359)
.++.|...+. .+.+|..|..++-.++. .+.|- +.= .+++-+ + .+. +++. +|--....+..++.+
T Consensus 234 f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~--dKL---~lln~L~q~l~lfg~~s~dq~-~d~df~e~vskLitg 305 (980)
T KOG2021|consen 234 FLNLLYKFLN--IEELRIAACNCILAIVSKKMKPM--DKL---ALLNMLNQTLELFGYHSADQM-DDLDFWESVSKLITG 305 (980)
T ss_pred HHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChh--HHH---HHHHHHHHHHHHHhhhccccc-cCchHHHHHHHHHhh
Confidence 3555555555 88999999999999886 33332 210 122222 2 222 2222 232222233444444
Q ss_pred ccccc---------------c----cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh---H--HhHHHHHHH
Q psy10461 976 LGKRV---------------K----PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ---E--EKLMGHLGV 1031 (1359)
Q Consensus 976 Lg~~i---------------k----Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~---e--~~lL~~Ll~ 1031 (1359)
.|..+ + ..+-.++|+++..++|+.-..-.+.-..++..-..++... . ...+.+++.
T Consensus 306 ~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~ill 385 (980)
T KOG2021|consen 306 FGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILL 385 (980)
T ss_pred cceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHH
Confidence 44321 1 2233456666666666554444444444444433333211 0 122333343
Q ss_pred HHHHHh-----c--cc----------ChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHH
Q psy10461 1032 VLYEYL-----G--EE----------YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLV 1094 (1359)
Q Consensus 1032 iLle~L-----~--De----------~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielI 1094 (1359)
..+..+ . ++ +.|++... ..|-....+++.+-+...+++.+.+-...+++.+|...+.|+..+
T Consensus 386 ai~kqicydemy~nddn~tg~EeEa~f~e~RkkL-k~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiyll 464 (980)
T KOG2021|consen 386 AIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKL-KNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLL 464 (980)
T ss_pred HHHHHHhccHHhhcccCCCCchHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 333332 1 11 22344433 222222333332222222333333333456788999999999999
Q ss_pred HHHHhhCCC--c-hhhHHHH--HHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHh------h
Q psy10461 1095 GRIADRGPE--Y-VSAREWM--RICFELLEL------LKAHKKAIRRATVNTFGYIAKAIGPH-DVLATLLNN------L 1156 (1359)
Q Consensus 1095 g~IA~~g~e--~-v~~kE~m--rIc~eLLel------LkD~~~sVR~AAv~tLg~IAk~~Gpe-dVlp~LL~~------L 1156 (1359)
=.+++.... + +..-+.+ ...+.++.+ +.-.+..|.-.-.+++..-.+.|..+ .-+|-+|+. +
T Consensus 465 y~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rgl 544 (980)
T KOG2021|consen 465 YNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGL 544 (980)
T ss_pred HHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhc
Confidence 999884221 1 1111122 122233333 22336678777788888777777654 334444444 3
Q ss_pred hcccchhHHHHHHHHHHHh----hhcCcc--ccHHHHHHhcCCC--CchhHHHHHHHH---HHHHHHhhhh---------
Q psy10461 1157 KVQERQNRVCTTVAIAIVA----ETCSPF--TVLPALMNEYRVP--ELNVQNGVLKAL---SFLFEYIGEM--------- 1216 (1359)
Q Consensus 1157 k~qe~~VRv~ta~AIg~LA----ea~gP~--~VLPaLLnlLkDp--E~nVR~~VlkaL---s~Iae~IG~~--------- 1216 (1359)
..++.+||.-+.--|...- +.+-|+ +++..+-.+|+.+ ..|.+..-+... .+|+|.+|-.
T Consensus 545 hn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE 624 (980)
T KOG2021|consen 545 HNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAE 624 (980)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHH
Confidence 3455567776665555443 333454 5666666666433 233221111111 4677777641
Q ss_pred -chhhHH-hHHHHHHH---------HHhccChHHH----HHHHHHHHHHHhhhcCC-------CchhHHhhhHHhhhccc
Q psy10461 1217 -GKDYIY-AVTPLLED---------ALMDRDLVHR----QTACATIKHMALGVYGF-------GCEDALTHLLNYVWPNI 1274 (1359)
Q Consensus 1217 -~kdYL~-~VlPlLed---------aL~D~D~~VR----qtA~saIk~LAl~~~gl-------G~EdaliHlLnlvlPnI 1274 (1359)
-..|.. .+.|++++ +..|++.-+. ..++-+|..+|.|+..- |+-..+...+.-+++-+
T Consensus 625 ~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~l 704 (980)
T KOG2021|consen 625 LQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTL 704 (980)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHH
Confidence 122442 23333222 2345554333 22333455555444322 34444555555555533
Q ss_pred cc--CChHHHHHHHHHHHHHHHhhchHHH--HHh----------------HhhhhccccccchhhHHHHHHhhhhccccc
Q psy10461 1275 FE--TSPHLVQAFMDAVEGLRVALGPVRI--LQY----------------VLQGLFHPARKVRDVYWKIYNSLYIGGQDA 1334 (1359)
Q Consensus 1275 ~E--tsp~Vi~~ileaLeaLr~aLG~~~l--l~~----------------vLpgLfhpA~kvrd~~WRvyn~~y~~~~~A 1334 (1359)
-. ...++|.++-..+..+-.++|++++ ++. +++-|-.+..+..+....+.|.+|.---.+
T Consensus 705 s~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~r 784 (980)
T KOG2021|consen 705 SFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNR 784 (980)
T ss_pred hhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4457888888888888888888551 222 222222233344567777888888777777
Q ss_pred hhhcccccc
Q psy10461 1335 LISAYPRIQ 1343 (1359)
Q Consensus 1335 lv~~~P~l~ 1343 (1359)
|..-+|+.+
T Consensus 785 Ifsvi~r~a 793 (980)
T KOG2021|consen 785 IFSVIERIA 793 (980)
T ss_pred HHHHhcccC
Confidence 777777654
No 120
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.40 E-value=14 Score=48.47 Aligned_cols=344 Identities=14% Similarity=0.155 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh
Q psy10461 963 VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP 1042 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p 1042 (1359)
.+++..|..+++......+=.-..+++.|...|..++..+...+..+|.+|+-.-.. ...-.-..+++.|...+.....
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN-K~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN-KDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHcCCHHHHHHHhcCCCH
Confidence 344444455555444333323356677777777778888888888888888744331 1111112345555566655566
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh--hCCCchhh------------
Q psy10461 1043 EVLGSILGALKAIVNVIGMT-KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD--RGPEYVSA------------ 1107 (1359)
Q Consensus 1043 EVl~siL~AL~aIa~vlG~~-~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~--~g~e~v~~------------ 1107 (1359)
+.+..++..|..+.---+.+ .| ....++|.++++++|.+. |..|+.++-.++. .+..-|..
T Consensus 346 ~l~~~aLrlL~NLSfd~~~R~~m--V~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 346 DLVNVALRLLFNLSFDPELRSQM--VSLGLIPKLVELLKDPNF--REVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHH--HHCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 66666666665552211100 00 011477888887776543 3344444444432 11100100
Q ss_pred --------HHHHHHHHHH---------------HHHHHhhHHHHHHH-HHHHHHHHHHHhCch-----hHHHHHHHhhhc
Q psy10461 1108 --------REWMRICFEL---------------LELLKAHKKAIRRA-TVNTFGYIAKAIGPH-----DVLATLLNNLKV 1158 (1359)
Q Consensus 1108 --------kE~mrIc~eL---------------LelLkD~~~sVR~A-Av~tLg~IAk~~Gpe-----dVlp~LL~~Lk~ 1158 (1359)
.+++.+|-.+ ++.|-+.--+-|.. ..+.+-.|+..=|+. +++..|+..++.
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~ 501 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS 501 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 1111111100 11111110000000 112222222221110 112222222222
Q ss_pred ccchhHHHHHHHHHHHhhhcC----------ccccHHHHHHhcCCCC--chhHHHHHHHHHHHHHHhhhhchhhH--HhH
Q psy10461 1159 QERQNRVCTTVAIAIVAETCS----------PFTVLPALMNEYRVPE--LNVQNGVLKALSFLFEYIGEMGKDYI--YAV 1224 (1359)
Q Consensus 1159 qe~~VRv~ta~AIg~LAea~g----------P~~VLPaLLnlLkDpE--~nVR~~VlkaLs~Iae~IG~~~kdYL--~~V 1224 (1359)
.+. -.-...++|.+|.--- .+.++|.+.+.|.... .++...++-.++.++. .+.+...+ .-+
T Consensus 502 ~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgl 577 (708)
T PF05804_consen 502 GDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGL 577 (708)
T ss_pred CCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCCh
Confidence 221 1233566666664431 2479999999997543 3566666555554442 22222222 245
Q ss_pred HHHHHHHHhcc---ChHHHHHHHHHHHHHHhhhcCCCchhHH--hhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchH
Q psy10461 1225 TPLLEDALMDR---DLVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV 1299 (1359)
Q Consensus 1225 lPlLedaL~D~---D~~VRqtA~saIk~LAl~~~glG~Edal--iHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~ 1299 (1359)
++.|..++... |..|=|. +-++-.+-++ .-..+..+ .+...+++..+.+.++.|+.-+-.+++.++..=.
T Consensus 578 i~~Li~LL~~kqeDdE~VlQi-l~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~-- 652 (708)
T PF05804_consen 578 IPTLIELLNAKQEDDEIVLQI-LYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE-- 652 (708)
T ss_pred HHHHHHHHHhhCchHHHHHHH-HHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH--
Confidence 55555554322 3222221 2233332211 11111111 1334456666667888999888888877766521
Q ss_pred HHHHhHhhhhccccccchhhHHHHHHhhhhcc
Q psy10461 1300 RILQYVLQGLFHPARKVRDVYWKIYNSLYIGG 1331 (1359)
Q Consensus 1300 ~ll~~vLpgLfhpA~kvrd~~WRvyn~~y~~~ 1331 (1359)
+-|+++|..-+|.||+-|+..
T Consensus 653 -----------~w~~ri~~~kF~~hN~~WLe~ 673 (708)
T PF05804_consen 653 -----------EWAERIRREKFRWHNAQWLEM 673 (708)
T ss_pred -----------HHHHHhhHHHHHHHHHHHHHH
Confidence 457889999999999999864
No 121
>KOG4535|consensus
Probab=95.39 E-value=10 Score=46.86 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=72.4
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHH----------HhcCccchhh-------hHHHHHHHHHHHhh-ccCchhH-HHHHHHH
Q psy10461 909 VDDLKDENEQYRKMVMESIEKTM----------SNLGAADIDS-------RLEEQLIDGILYAF-QEQTTED-VVMLNGF 969 (1359)
Q Consensus 909 l~~LKDes~~VR~~Aa~~L~~Ia----------~~LGpe~l~~-------~L~~~Lld~LLplL-qd~~~eD-~v~lkaL 969 (1359)
...|||.++.-|--|++.+..+. ..+|+....+ .+.+ +...++-.+ .+.++.. ..+++++
T Consensus 53 ~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~-~~r~l~~~l~~e~~~~~~tq~~kcl 131 (728)
T KOG4535|consen 53 TLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRE-LHRCLLLALVAESSSQTVTQIIKCL 131 (728)
T ss_pred EEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHH-HHHHHHHHHHHhcCchhHHHHHHHH
Confidence 56899999999999998887654 3456553332 1111 122233222 3444443 6778888
Q ss_pred HHHHhhccc-cc-ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy10461 970 GTIVNQLGK-RV-KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015 (1359)
Q Consensus 970 g~Lae~Lg~-~i-kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~ 1015 (1359)
..++.+.+- .+ -.++.+++.-|.++++++++.||-.+..+++.|..
T Consensus 132 a~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 132 ANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 888877653 22 26778888889999999999999999988887764
No 122
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.35 E-value=0.66 Score=59.00 Aligned_cols=272 Identities=17% Similarity=0.212 Sum_probs=131.0
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikP 982 (1359)
+++..+...+.+.+..+...+...+..++..+..-... -+..+..-+.... ....+-+.|-.++-.+|.
T Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~------~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT---- 393 (618)
T PF01347_consen 325 ELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYE------DLEELYKQLKSKS-KKEQARKIFLDALPQAGT---- 393 (618)
T ss_dssp HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HH------HHHHHHHHHTTS----HHHHHHHHHHHHHH-S----
T ss_pred HHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCC----
Confidence 34555555554444455556666677777666553211 1222233222221 111122222233333443
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-hhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM-KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl-~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
..-+.+|..++....- -=..|++.+..+...+ .+. .++|..+..++........+.+..+++-+++.++...-.
T Consensus 394 --~~av~~i~~~I~~~~~-~~~ea~~~l~~l~~~~~~Pt--~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 394 --NPAVKFIKDLIKSKKL-TDDEAAQLLASLPFHVRRPT--EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp --HHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT-------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 2223334444443211 1234777788877766 332 344444433333222223455666677777777665422
Q ss_pred CC---------CCCchhchHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhh---H
Q psy10461 1062 TK---------MTPPIKDLLPRLTPILK----NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH---K 1125 (1359)
Q Consensus 1062 ~~---------lsp~l~~lLP~L~~LLk----Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~---~ 1125 (1359)
.. .......+++.+...++ ..+...+..++.+||.++... +...+++.+.+. .
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~-----------~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE-----------SIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-----------GHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch-----------hhHHHHhHhhhccccc
Confidence 21 22334566666666443 445566778888888876411 122334555444 5
Q ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhccc--chhHHHHHHHHHHHhhhcCc-cccHHHHHHhcC-CCCchhHHH
Q psy10461 1126 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCSP-FTVLPALMNEYR-VPELNVQNG 1201 (1359)
Q Consensus 1126 ~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe--~~VRv~ta~AIg~LAea~gP-~~VLPaLLnlLk-DpE~nVR~~ 1201 (1359)
..||-+|+.+|..++.. -++.+...+++.+.... ..+|+++...+-. |.| ..+|-.+.+.++ ++...|..-
T Consensus 538 ~~~R~~Ai~Alr~~~~~-~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~----~~P~~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKH-CPEKVREILLPIFMNTTEDPEVRIAAYLILMR----CNPSPSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH----T---HHHHHHHHHHHTT-S-HHHHHH
T ss_pred hHHHHHHHHHHHHHhhc-CcHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCCHHHHHHHHHHHhhCchHHHHHH
Confidence 67999999999988655 46677777777776443 3488885544332 434 366777777764 566667665
Q ss_pred HHHHH
Q psy10461 1202 VLKAL 1206 (1359)
Q Consensus 1202 VlkaL 1206 (1359)
|.+.|
T Consensus 613 v~S~L 617 (618)
T PF01347_consen 613 VYSHL 617 (618)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
No 123
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.34 E-value=1.2 Score=56.28 Aligned_cols=154 Identities=13% Similarity=0.115 Sum_probs=90.9
Q ss_pred HHHHHHHhh----HHHHHHHHHHHHHHHHHHhCc----------hhHHHHHHHhhh----cccchhHHHHHHHHHHHhhh
Q psy10461 1116 ELLELLKAH----KKAIRRATVNTFGYIAKAIGP----------HDVLATLLNNLK----VQERQNRVCTTVAIAIVAET 1177 (1359)
Q Consensus 1116 eLLelLkD~----~~sVR~AAv~tLg~IAk~~Gp----------edVlp~LL~~Lk----~qe~~VRv~ta~AIg~LAea 1177 (1359)
.+++++++. +..+|..|+-+++.+....-. +++++.|...|. ..+...++....|+|.++.-
T Consensus 397 ~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~ 476 (574)
T smart00638 397 ALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP 476 (574)
T ss_pred HHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh
Confidence 345565542 457899999999988874321 245555554443 23334466667777766543
Q ss_pred cCccccHHHHHHhcC---CCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc--ChHHHHHHHHHHHHHHh
Q psy10461 1178 CSPFTVLPALMNEYR---VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1178 ~gP~~VLPaLLnlLk---DpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~--D~~VRqtA~saIk~LAl 1252 (1359)
. .++.|...+. .....+|..++++|..+++.+.. .+.+.|..+.+|. +..+|.+|..++..--
T Consensus 477 ~----~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~- 544 (574)
T smart00638 477 S----SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAAVLVLMETK- 544 (574)
T ss_pred h----HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-
Confidence 2 3333443333 34466999999999988876653 5556666666665 5678876665443320
Q ss_pred hhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHH
Q psy10461 1253 GVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 1289 (1359)
Q Consensus 1253 ~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaL 1289 (1359)
+. ...+.++...++- |.+.+|...+...|
T Consensus 545 --P~---~~~l~~ia~~l~~---E~~~QV~sfv~S~l 573 (574)
T smart00638 545 --PS---VALLQRIAELLNK---EPNLQVASFVYSHI 573 (574)
T ss_pred --CC---HHHHHHHHHHHhh---cCcHHHHHHhHHhh
Confidence 21 1334444444443 57788887666554
No 124
>KOG1949|consensus
Probab=95.31 E-value=0.62 Score=58.76 Aligned_cols=148 Identities=20% Similarity=0.177 Sum_probs=101.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh----HHhHHHHHHHHHHHHhcccChHHHHHH-HHHHHHHHHHhCCCCC
Q psy10461 990 TILWRLNNKSAKVRQQAADLISRIAVVMKTCQ----EEKLMGHLGVVLYEYLGEEYPEVLGSI-LGALKAIVNVIGMTKM 1064 (1359)
Q Consensus 990 iIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~----e~~lL~~Ll~iLle~L~De~pEVl~si-L~AL~aIa~vlG~~~l 1064 (1359)
+|-..|+-.+..||..||.+.-.+-+..++.. .+-.+++-.-.|+..|.|++|+|++.. .+.+..+..---+ ..
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~-iP 256 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM-IP 256 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-cC
Confidence 34445667899999999999999988876432 155778888889999999999999863 3333333322110 01
Q ss_pred CCchhchHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10461 1065 TPPIKDLLPRLTP-ILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1065 sp~l~~lLP~L~~-LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk 1141 (1359)
+..+.++|-.|+. +..|....||-++.+-|+.++..-. ..+. +..+...+-..|.|...+||-|+++.|-.|-.
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~-sh~~--le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL-SHPL--LEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc-chhH--HHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 2245667777777 5678888999999999999876211 0111 11123333356889999999999999988754
No 125
>KOG1077|consensus
Probab=95.30 E-value=2.9 Score=53.20 Aligned_cols=249 Identities=20% Similarity=0.211 Sum_probs=147.3
Q ss_pred HHHHHHHHHhCCCCCCCchhchHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHH
Q psy10461 1050 GALKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA 1127 (1359)
Q Consensus 1050 ~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkD--r~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~s 1127 (1359)
-||..|+++ |.+.| ...+-+.|..+|.. ...-||+.++-++=.+-...++-++..+|..=+ +.+|.|.+-.
T Consensus 130 LAL~~I~ni-G~re~---~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~ri---v~LL~D~~~g 202 (938)
T KOG1077|consen 130 LALHCIANI-GSREM---AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRI---VHLLDDQHMG 202 (938)
T ss_pred HHHHHHHhh-ccHhH---HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHH---HHHhCccccc
Confidence 345544443 54545 33555666676653 345688888877777777777777777775422 4678888888
Q ss_pred HHHHHHHHHHHHHHHhCch--hHHHHHHHhh----hc-----ccc--------hhHHHHHHHHHHHhhhc-Cc------c
Q psy10461 1128 IRRATVNTFGYIAKAIGPH--DVLATLLNNL----KV-----QER--------QNRVCTTVAIAIVAETC-SP------F 1181 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~Gpe--dVlp~LL~~L----k~-----qe~--------~VRv~ta~AIg~LAea~-gP------~ 1181 (1359)
|=-+++..+..|++..+++ ..++.-+..| .+ +|+ ++-+-....+... +.- .+ .
T Consensus 203 v~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~ 281 (938)
T KOG1077|consen 203 VVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLN 281 (938)
T ss_pred eeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHH
Confidence 8889999999999987664 2222222111 11 222 1221111111111 111 01 1
Q ss_pred ccHHHHHHhcCCCC-------chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhh
Q psy10461 1182 TVLPALMNEYRVPE-------LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 1254 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE-------~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~ 1254 (1359)
+++-.++|..++|. .|++++|+-..-.++-.+++ ..+.+..-+..|-+.+.++....|+.|...+.+|+-.
T Consensus 282 evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss- 359 (938)
T KOG1077|consen 282 EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS- 359 (938)
T ss_pred HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-
Confidence 67888888887433 34444444332222222232 2334445556677788899999999988888887632
Q ss_pred cCCCchhHHhhhHHhhhcccc-cCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhc
Q psy10461 1255 YGFGCEDALTHLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF 1310 (1359)
Q Consensus 1255 ~glG~EdaliHlLnlvlPnI~-Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLf 1310 (1359)
.+ ..|++-|.+..++..+. |.+-.++.++++-+=++|.+-....+..-+|+-|-
T Consensus 360 -~~-s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~ 414 (938)
T KOG1077|consen 360 -EF-SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLE 414 (938)
T ss_pred -cc-hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Confidence 22 23666666888888777 67777899999999888877665554444444443
No 126
>KOG0567|consensus
Probab=95.28 E-value=2.4 Score=48.74 Aligned_cols=194 Identities=21% Similarity=0.244 Sum_probs=121.5
Q ss_pred HHHHHHHHhcccChHHH--HHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---C-
Q psy10461 1029 LGVVLYEYLGEEYPEVL--GSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG---P- 1102 (1359)
Q Consensus 1029 Ll~iLle~L~De~pEVl--~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g---~- 1102 (1359)
-+++|...|.|+..+.. -..-.+|+++.. ...++.+....+|....|++.|..++..+-... .
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 45667777777765533 234455555431 145555666567888889998888888874421 1
Q ss_pred ----Cc--hhhH--HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHH
Q psy10461 1103 ----EY--VSAR--EWMRICFELLELLKAH-KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI 1173 (1359)
Q Consensus 1103 ----e~--v~~k--E~mrIc~eLLelLkD~-~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~ 1173 (1359)
.| +++. .-.+-..++-..|.|. +.-.++. .++=++-. .|.++-+..|.+-+.....-.|--++..||.
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn-~g~EeaI~al~~~l~~~SalfrhEvAfVfGQ 213 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRN-IGTEEAINALIDGLADDSALFRHEVAFVFGQ 213 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhc-cCcHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 11 1111 0001122333334443 3334333 22223322 3667777778888887766678888898987
Q ss_pred HhhhcCccccHHHHHHhcCCCC--chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1174 VAETCSPFTVLPALMNEYRVPE--LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1174 LAea~gP~~VLPaLLnlLkDpE--~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
+-. .+-+|.|...|.|.. +-||.-++.+|+.|+. ...++.|+..+.|.+.+||..+..++..+
T Consensus 214 l~s----~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 214 LQS----PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ccc----hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 643 346899999998744 7799999999888752 37788999999999999998765555443
No 127
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.25 E-value=0.018 Score=44.79 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=26.8
Q ss_pred cHHHHHHhcCCCCchhHHHHHHHHHHHHHHh
Q psy10461 1183 VLPALMNEYRVPELNVQNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1183 VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~I 1213 (1359)
++|.|+++++|++++||..++.+|+.|++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999888753
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.28 Score=63.33 Aligned_cols=156 Identities=11% Similarity=0.205 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc--ccHHHHHHhcCCCCchh
Q psy10461 1123 AHKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNV 1198 (1359)
Q Consensus 1123 D~~~sVR~AAv~tLg~IAk~~Gpe--dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~--~VLPaLLnlLkDpE~nV 1198 (1359)
+.+...|..|++.+...... |.+ .+.+.++.+....+.-++.....-+...|+.=... -.++.+++-+.||.+.+
T Consensus 30 s~n~~~kidAmK~iIa~M~~-G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~i 108 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSL-GEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEI 108 (757)
T ss_pred ccChHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHH
Confidence 33444455555444332221 432 34555555544444434333344444444332211 45677777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCch---hH-HhhhHHhhhccc
Q psy10461 1199 QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE---DA-LTHLLNYVWPNI 1274 (1359)
Q Consensus 1199 R~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~E---da-liHlLnlvlPnI 1274 (1359)
|..++.+++.+-. +..+..+++.+.++++|++.-||++|+-++..+ +.++.+ +. +.+. ..-.+
T Consensus 109 R~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kl----y~ld~~l~~~~g~~~~---l~~l~ 175 (757)
T COG5096 109 RGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKL----YRLDKDLYHELGLIDI---LKELV 175 (757)
T ss_pred HHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH----HhcCHhhhhcccHHHH---HHHHh
Confidence 7777777654321 334456677777777777777776665555443 222211 11 1121 22233
Q ss_pred ccCChHHHHHHHHHHHHH
Q psy10461 1275 FETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1275 ~Etsp~Vi~~ileaLeaL 1292 (1359)
.|++|.|+.+++.++..+
T Consensus 176 ~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 176 ADSDPIVIANALASLAEI 193 (757)
T ss_pred hCCCchHHHHHHHHHHHh
Confidence 467777776666666333
No 129
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.20 E-value=0.98 Score=57.47 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=112.9
Q ss_pred HHHHhhhcCCC--CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccccccc
Q psy10461 905 INRVVDDLKDE--NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 905 I~~Ll~~LKDe--s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikP 982 (1359)
+..+...++.. .+..|..-+++|.. .|.. .-+..+.-++......+..+...|..+......-
T Consensus 364 L~~l~~~~~~~~~~~~~r~~~lDal~~----aGT~--------~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~P--- 428 (618)
T PF01347_consen 364 LEELYKQLKSKSKKEQARKIFLDALPQ----AGTN--------PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRP--- 428 (618)
T ss_dssp HHHHHHHHTTS---HHHHHHHHHHHHH----H-SH--------HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH----cCCH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCC---
Confidence 44445555555 55666666555543 4444 2334444444443332222222333333322121
Q ss_pred chHhHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhhhh---------hHHhHHHHHHHHHHHHhc----ccChHHH
Q psy10461 983 YLPQICGTILWRLNN----KSAKVRQQAADLISRIAVVMKTC---------QEEKLMGHLGVVLYEYLG----EEYPEVL 1045 (1359)
Q Consensus 983 yl~qILpiIl~LL~D----es~~VR~aAAe~Is~LA~vl~~~---------~e~~lL~~Ll~iLle~L~----De~pEVl 1045 (1359)
-.+++..+..+++. .++.+|..|.-.++.+..-.-.. ........++..|...|+ ....+..
T Consensus 429 -t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 507 (618)
T PF01347_consen 429 -TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEK 507 (618)
T ss_dssp --HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHH
T ss_pred -CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHH
Confidence 24444444444443 57889999998888887644211 112333444444444443 3333445
Q ss_pred HHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH
Q psy10461 1046 GSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR---HEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 1122 (1359)
Q Consensus 1046 ~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr---~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk 1122 (1359)
..+|.||+.+. ....++.+.+++.+. ...+|.+|++++..++..+++. +-..+++++.
T Consensus 508 ~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~ 568 (618)
T PF01347_consen 508 IVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFM 568 (618)
T ss_dssp HHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH
T ss_pred HHHHHHhhccC-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhc
Confidence 55666666542 126788888877766 5689999999999887655422 2334578887
Q ss_pred hh--HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcc-cchhH
Q psy10461 1123 AH--KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ-ERQNR 1164 (1359)
Q Consensus 1123 D~--~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~q-e~~VR 1164 (1359)
|. ...||-+|...|- +.-++..++..|...++.. +.+|+
T Consensus 569 n~~e~~EvRiaA~~~lm---~~~P~~~~l~~i~~~l~~E~~~QV~ 610 (618)
T PF01347_consen 569 NTTEDPEVRIAAYLILM---RCNPSPSVLQRIAQSLWNEPSNQVA 610 (618)
T ss_dssp -TTS-HHHHHHHHHHHH---HT---HHHHHHHHHHHTT-S-HHHH
T ss_pred CCCCChhHHHHHHHHHH---hcCCCHHHHHHHHHHHhhCchHHHH
Confidence 75 5679999875443 3324557777777766543 34444
No 130
>PF05536 Neurochondrin: Neurochondrin
Probab=95.19 E-value=13 Score=47.22 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhcccc-cccchHhHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHhhhhhHHhHHH-HHHHHHHHHhcc
Q psy10461 963 VVMLNGFGTIVNQLGKR-VKPYLPQICGTILWRLNNKSA-KVRQQAADLISRIAVVMKTCQEEKLMG-HLGVVLYEYLGE 1039 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~-ikPyl~qILpiIl~LL~Des~-~VR~aAAe~Is~LA~vl~~~~e~~lL~-~Ll~iLle~L~D 1039 (1359)
..++..+.+++. .++. ..|-+-.-+|.+...+...+. .+-..+.+++..|+.. +.+...++. ..++.|.+.+..
T Consensus 75 ~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 75 SLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHHHHh
Confidence 344545555555 2222 247778888999988887766 7778888888888722 212222221 123333333322
Q ss_pred cChHHHHHHHHHHHHHHHHhCCCCC---CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC----chhhHHHHH
Q psy10461 1040 EYPEVLGSILGALKAIVNVIGMTKM---TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPE----YVSAREWMR 1112 (1359)
Q Consensus 1040 e~pEVl~siL~AL~aIa~vlG~~~l---sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e----~v~~kE~mr 1112 (1359)
.+-..-..+..+..+....+.+.+ ...+..+++.+....+..+...+-.+...++.+-..++. ......|..
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 222222333444444444442222 123445667777766666665566667777777554421 122223544
Q ss_pred -HHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCchh
Q psy10461 1113 -ICFELLELLKAH-KKAIRRATVNTFGYIAKAIGPHD 1147 (1359)
Q Consensus 1113 -Ic~eLLelLkD~-~~sVR~AAv~tLg~IAk~~Gped 1147 (1359)
+...+.++|.+. ..+-|..+.+....+.+.+|++.
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 666677888775 66789999999999999999853
No 131
>KOG0414|consensus
Probab=95.17 E-value=9.9 Score=51.19 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-Hhhhhh-H---HhHHHHHHHHHHHH
Q psy10461 962 DVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV-VMKTCQ-E---EKLMGHLGVVLYEY 1036 (1359)
Q Consensus 962 D~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~-vl~~~~-e---~~lL~~Ll~iLle~ 1036 (1359)
|....+.++.++..+...+...+-+=+..+..++..++...|.+..++++++.. .+...+ + ..+-..++..|.+.
T Consensus 288 d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~er 367 (1251)
T KOG0414|consen 288 DCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRER 367 (1251)
T ss_pred cccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHH
Confidence 355667777777777766544444445555668888999999999999999854 333211 1 12223477788888
Q ss_pred hcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Q psy10461 1037 LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG 1101 (1359)
Q Consensus 1037 L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g 1101 (1359)
+.|.++-|+.-+++.+..+...-.. .-....+++.-.+.-+.|++.-||++|++++..+-.+-
T Consensus 368 l~Dvsa~vRskVLqv~~~l~~~~s~--p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~ 430 (1251)
T KOG0414|consen 368 LLDVSAYVRSKVLQVFRRLFQQHSI--PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRH 430 (1251)
T ss_pred hhcccHHHHHHHHHHHHHHHHccCC--CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999988888764210 00113345555555678999999999999999886644
No 132
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.18 Score=62.03 Aligned_cols=151 Identities=14% Similarity=0.186 Sum_probs=106.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHH-HhhCCCchhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhCchhHHHHH
Q psy10461 1075 LTPILKNRHEKVQENCIDLVGRI-ADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIGPHDVLATL 1152 (1359)
Q Consensus 1075 L~~LLkDr~~rVR~AAielIg~I-A~~g~e~v~~kE~mrIc~eLLel-LkD~~~sVR~AAv~tLg~IAk~~GpedVlp~L 1152 (1359)
|..++.|+.+-.|.+-+-.++.- +..|. .. ++..+|.. ..|.++.|||||+-+||.++=. .-+.++..
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn--~~------vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--D~~~lv~t 590 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGN--LG------VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--DRDLLVGT 590 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCc--ch------hHhhhheeecccCchHHHHHHHHheeeeEec--CcchhhHH
Confidence 44467788888888777665542 22222 11 33445665 6788999999999999987643 33555555
Q ss_pred HHhhh-cccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHH
Q psy10461 1153 LNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA 1231 (1359)
Q Consensus 1153 L~~Lk-~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLeda 1231 (1359)
++.|. +.+.+||..+++++|+-|..-|....+..|-.+..|+.--||.+++-+++.|.-.+.+...+-+..|..-+.++
T Consensus 591 velLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~v 670 (926)
T COG5116 591 VELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRV 670 (926)
T ss_pred HHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHH
Confidence 55554 55667999999999998888887767777777788999999999999999998877764444344455555555
Q ss_pred Hhcc
Q psy10461 1232 LMDR 1235 (1359)
Q Consensus 1232 L~D~ 1235 (1359)
+.|.
T Consensus 671 I~~K 674 (926)
T COG5116 671 IVDK 674 (926)
T ss_pred Hhhh
Confidence 5543
No 133
>KOG2022|consensus
Probab=94.71 E-value=21 Score=47.03 Aligned_cols=197 Identities=19% Similarity=0.272 Sum_probs=116.7
Q ss_pred HHHHHhhcccccccchHhHHHHHHHhhcC----CCHHHHHHHH-HHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-----c
Q psy10461 969 FGTIVNQLGKRVKPYLPQICGTILWRLNN----KSAKVRQQAA-DLISRIAVVMKTCQEEKLMGHLGVVLYEYL-----G 1038 (1359)
Q Consensus 969 Lg~Lae~Lg~~ikPyl~qILpiIl~LL~D----es~~VR~aAA-e~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-----~ 1038 (1359)
+-....-+|+.+ ++-+...+...+.| ++.--|.+++ =++-.++..++... ... ++-+++.. .
T Consensus 448 ~~~~Y~ilgd~l---l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~-~~~----i~rl~~~~asik~S 519 (982)
T KOG2022|consen 448 LMSSYSILGDGL---LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE-STW----IPRLFETSASIKLS 519 (982)
T ss_pred HHHHHHHHhHHH---HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch-hHH----HHHHHHhccccccc
Confidence 334444444332 23344445555544 3344455544 44555566655211 122 33344332 1
Q ss_pred ccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH--HHHHHHHH
Q psy10461 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR--EWMRICFE 1116 (1359)
Q Consensus 1039 De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k--E~mrIc~e 1116 (1359)
.-+++-++.+...++.+++.++.. ..++...||.++.-+.+... -.+++..+..++..|.+.++.. ..+..|.+
T Consensus 520 ~~n~ql~~Tss~~igs~s~~l~e~--P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 520 APNPQLLSTSSDLIGSLSNWLGEH--PMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred cCChhHHHHHHHHHHHHHHHHhcC--CcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 226777888888999999998754 23577788888886664333 3455666889999888776653 24556655
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHh---------------hhcccchhHHHH-HHHHHHHhhhc
Q psy10461 1117 LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNN---------------LKVQERQNRVCT-TVAIAIVAETC 1178 (1359)
Q Consensus 1117 LLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~---------------Lk~qe~~VRv~t-a~AIg~LAea~ 1178 (1359)
+++- ...+.+.|......+|++....-|+++..+|... ++.++++.|.+. ..+++.++..+
T Consensus 596 ~l~~-~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL 672 (982)
T KOG2022|consen 596 VLNK-SNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSL 672 (982)
T ss_pred Hhcc-cccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5433 4457789999999999999998887665543221 223445566553 36666665444
No 134
>KOG2160|consensus
Probab=94.69 E-value=1.7 Score=51.65 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=82.0
Q ss_pred hhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc
Q psy10461 960 TED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG 1038 (1359)
Q Consensus 960 ~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~ 1038 (1359)
.++ +.++.-|-.+++..+....-+-...+..++..+++.++.||..||++|+..+..-..+++.-+=...+..|+..|.
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 355 6777777788887765433233444555566999999999999999999998765544442111123344444454
Q ss_pred ccChH-HHHHHHHHHHHHHHHh--CCCCCCCchhchHHHHHHHhcC--CCHHHHHHHHHHHHHHHh
Q psy10461 1039 EEYPE-VLGSILGALKAIVNVI--GMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1039 De~pE-Vl~siL~AL~aIa~vl--G~~~lsp~l~~lLP~L~~LLkD--r~~rVR~AAielIg~IA~ 1099 (1359)
.+.++ ++..++.|+.++.... |.+.+-. +.- +--|.+++++ ..-+.++-++.++..+..
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 34444 4466777777776542 1110000 000 2223344554 666778888888888766
No 135
>KOG1949|consensus
Probab=94.66 E-value=0.23 Score=62.45 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=76.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy10461 989 GTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNVIGMTKMTPP 1067 (1359)
Q Consensus 989 piIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEVl~siL~AL~aIa~vlG~~~lsp~ 1067 (1359)
-.+..+|.|+-++||..|..-++++....=......++..++--+...+ .|...||+-++..++..+..+-- --+-
T Consensus 223 ~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~ 299 (1005)
T KOG1949|consen 223 EELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPL 299 (1005)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhH
Confidence 3456789999999999999988888653321111334444444444444 45567888888777777765532 2345
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
++.+||++-+.+.|.+.+||.|+.+.|-.|-.
T Consensus 300 le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 300 LEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999855
No 136
>KOG1525|consensus
Probab=94.62 E-value=2 Score=58.64 Aligned_cols=331 Identities=14% Similarity=0.161 Sum_probs=166.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccchHhHHHH
Q psy10461 911 DLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGT 990 (1359)
Q Consensus 911 ~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qILpi 990 (1359)
.|||.+-.||..++-|+..|.+-.-|+.--.. ..|.|.|.. |-.-..+|++...||+.+..-+
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~--~~lkdIf~~---------------~~~q~~gL~d~~sp~f~r~~~l 120 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTD--EQLKDIFQL---------------ILSQFSGLGDVESPYFKRYFYL 120 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcH--HHHHHHHHH---------------HHHHHhhccCCCCcchhhHHHH
Confidence 78899999999999999999987777611110 022222221 2233455666667888888877
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhc
Q psy10461 991 ILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKD 1070 (1359)
Q Consensus 991 Il~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~ 1070 (1359)
+..++.- . ++-++....-++++..++..++..+.+.++..+-++++.+..+...++. ...+
T Consensus 121 letl~~~------------k--~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~-----v~~e 181 (1266)
T KOG1525|consen 121 LETLAKV------------K--FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT-----VQSE 181 (1266)
T ss_pred HHHHHHh------------H--HHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc-----chHH
Confidence 7766541 1 2222221111456677777778778777887776665666665555432 1335
Q ss_pred hHHHHHH-Hhc---CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCc
Q psy10461 1071 LLPRLTP-ILK---NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1071 lLP~L~~-LLk---Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD-~~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
+|-.|+. +++ |....-+.-+.++|...|..-...+..+ +.-|. +... ..-+++.-.-+.+-.|-.. .|
T Consensus 182 ~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f--~~~~~----~~~~s~~~~~~~~~he~i~~L~~~-~p 254 (1266)
T KOG1525|consen 182 LLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANF--LNSCL----TEYKSRQSSLKIKYHELILELWRI-AP 254 (1266)
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHH--HHHHH----hhccccccchhhHHHHHHHHHHHh-hH
Confidence 5555555 443 3333344445555555554322221111 11110 0011 1112222222222222222 22
Q ss_pred h---hHHHHHHHhhhcccchhHHHHHHHHHHHh----hhcC-cc-ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhh
Q psy10461 1146 H---DVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCS-PF-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM 1216 (1359)
Q Consensus 1146 e---dVlp~LL~~Lk~qe~~VRv~ta~AIg~LA----ea~g-P~-~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~ 1216 (1359)
+ .|+|.|..-|..++..+|.-+.--+|.+- ..++ .+ .+..++++-+.|-..+||...++....+.-.-...
T Consensus 255 ~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 2 34566666666666667776555555431 1112 12 67888888888888888888888876655442221
Q ss_pred chhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhh-hHHhhhcccccCChHHHHHHHHHHHHH
Q psy10461 1217 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH-LLNYVWPNIFETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1217 ~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliH-lLnlvlPnI~Etsp~Vi~~ileaLeaL 1292 (1359)
.++ ..++-.+....-|.+..||....-++..++ -+-+ .+++ +|..+-..+.|-...||.-+|..+..+
T Consensus 335 ~~~--~~~~~~l~~~~~D~~~rir~~v~i~~~~v~----~~~l--~~~~~ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 335 AKA--STILLALRERDLDEDVRVRTQVVIVACDVM----KFKL--VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred hhH--HHHHHHHHhhcCChhhhheeeEEEEEeehh----Hhhh--hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 111 122333333333444444421110100000 0001 1122 556666666666667776555555433
No 137
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.55 E-value=3.8 Score=47.33 Aligned_cols=216 Identities=13% Similarity=0.173 Sum_probs=111.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCC-chh
Q psy10461 992 LWRLNNKSAKVRQQAADLISRIAVVMKTC-QEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP-PIK 1069 (1359)
Q Consensus 992 l~LL~Des~~VR~aAAe~Is~LA~vl~~~-~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp-~l~ 1069 (1359)
...+++++..+|.+|..+++.+-..+... ...+-+..++..+..+|.| ...+..++.++.+++.. ...++ ...
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~---~~~~~~~~~ 79 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKM---KNFSPESAV 79 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhC---cCCChhhHH
Confidence 45678899999999999999887776532 1133455566666677743 33344446666666632 22222 122
Q ss_pred chHHHHHHH--hcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCch
Q psy10461 1070 DLLPRLTPI--LKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH-KKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1070 ~lLP~L~~L--LkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~-~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
.++..+..- ++.....+|..+.+++..+...-.+.+.... ...+..++...... ...-=-.+.+.+..+...|...
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~ 158 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS 158 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 333333331 1233346899999998887653211110000 00111122222111 1111122334444444444443
Q ss_pred hHHHHHHHhhh--------c--ccc------hhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1147 DVLATLLNNLK--------V--QER------QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1147 dVlp~LL~~Lk--------~--qe~------~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
+....+.+.+. - ++. .++...-.+|.. ...++| ..+|.|+.-|.+..++|+.-++++|..++
T Consensus 159 ~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa~-~~~p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 159 EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFAP-FAFPLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 33333332211 0 111 111111111110 011122 48999999999999999999999999999
Q ss_pred HHhhh
Q psy10461 1211 EYIGE 1215 (1359)
Q Consensus 1211 e~IG~ 1215 (1359)
+..|.
T Consensus 237 ~~y~~ 241 (262)
T PF14500_consen 237 ENYGA 241 (262)
T ss_pred HHCCH
Confidence 98886
No 138
>KOG2025|consensus
Probab=94.44 E-value=11 Score=48.35 Aligned_cols=196 Identities=17% Similarity=0.182 Sum_probs=114.8
Q ss_pred hcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHH-Hhc---CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHH
Q psy10461 1037 LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP-ILK---NRHEKVQENCIDLVGRIADRGPEYVSAREWMR 1112 (1359)
Q Consensus 1037 L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~-LLk---Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mr 1112 (1359)
=++..+|.+...+..|-.-....+ .-.+++..++. +++ .+.-.||..+.++|..+.+ +...++..-...
T Consensus 54 Kresi~dRIl~fla~fv~sl~q~d------~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~ 126 (892)
T KOG2025|consen 54 KRESIPDRILSFLARFVESLPQLD------KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNK 126 (892)
T ss_pred cCCCcHHHHHHHHHHHHHhhhccC------chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHH
Confidence 355566665544343333322222 23345555544 554 4556799999999999877 222233221112
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHhhhcccc-hhHHHHHHHHHHHhhhcCccccHHHHHH
Q psy10461 1113 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSPFTVLPALMN 1189 (1359)
Q Consensus 1113 Ic~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe--dVlp~LL~~Lk~qe~-~VRv~ta~AIg~LAea~gP~~VLPaLLn 1189 (1359)
+...++.-|+|..+.||..|+.+|..+-..-+.+ .+...++..++.+.+ -||.++...|..=. .-+|.++.
T Consensus 127 l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn------sTlp~Ive 200 (892)
T KOG2025|consen 127 LNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDN------STLPCIVE 200 (892)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCc------ccchhHHH
Confidence 3344556689999999999999999887532322 345555555554433 48888655554322 45788999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1190 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1190 lLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
-.+|-..-+|.-|-.- +.+.+. +...-+..-+-+|+-.+.|++..||+++...|-+
T Consensus 201 RarDV~~anRrlvY~r---~lpkid-~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 201 RARDVSGANRRLVYER---CLPKID-LRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred HhhhhhHHHHHHHHHH---hhhhhh-hhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 9998665555433222 233331 1111223556788889999999999865544433
No 139
>KOG1967|consensus
Probab=94.43 E-value=0.3 Score=63.06 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhcccc-cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccC
Q psy10461 963 VVMLNGFGTIVNQLGKR-VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEY 1041 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~-ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~ 1041 (1359)
+..++++..++.+.+.- +.|.++.|+|.|+..+.-++..||..+-.++.-+-....... ...+..++|.++..-.+.+
T Consensus 885 ~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~-t~~~~Tlvp~lLsls~~~~ 963 (1030)
T KOG1967|consen 885 HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ-TEHLSTLVPYLLSLSSDND 963 (1030)
T ss_pred hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc-hHHHhHHHHHHHhcCCCCC
Confidence 78888999999988874 689999999999999999999999999988887765544221 3556677777766544433
Q ss_pred ---hHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1042 ---PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1042 ---pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
.-|+..++++|.++..++....+.++-.+.+..|.+.|.|+.-.||..|++.=+.
T Consensus 964 n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 964 NNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred cchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 3456678899999999887777778788899999999999999999999876443
No 140
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.43 E-value=3.2 Score=52.54 Aligned_cols=150 Identities=19% Similarity=0.145 Sum_probs=84.1
Q ss_pred HhHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhhhhhH-----HhHHHHHHHHHHHHhc----ccChHHHHHHHHH
Q psy10461 985 PQICGTILWRLNN----KSAKVRQQAADLISRIAVVMKTCQE-----EKLMGHLGVVLYEYLG----EEYPEVLGSILGA 1051 (1359)
Q Consensus 985 ~qILpiIl~LL~D----es~~VR~aAAe~Is~LA~vl~~~~e-----~~lL~~Ll~iLle~L~----De~pEVl~siL~A 1051 (1359)
.+++..+..++++ .++.+|..|.-..+.++.-. |.. ...+..+++.|.+.|. +.+.+....+|.|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~--c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 469 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY--CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKA 469 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH--hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHh
Confidence 4555555566654 47788998888888887533 211 1223445555555542 3333444445555
Q ss_pred HHHHHHHhCCCCCCCchhchHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhh--HH
Q psy10461 1052 LKAIVNVIGMTKMTPPIKDLLPRLTPILK---NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH--KK 1126 (1359)
Q Consensus 1052 L~aIa~vlG~~~lsp~l~~lLP~L~~LLk---Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~--~~ 1126 (1359)
|+.+. ....++.+.+++. +....+|.+|+.+|..++..++..+- ..+++++.|. ..
T Consensus 470 LGN~g-----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~ 530 (574)
T smart00638 470 LGNAG-----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPP 530 (574)
T ss_pred hhccC-----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCCh
Confidence 55432 1244555555443 33457888999999888876653222 2235666653 55
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHhhhc
Q psy10461 1127 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKV 1158 (1359)
Q Consensus 1127 sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~ 1158 (1359)
+||-+|+..|-. .-++..++..|...+..
T Consensus 531 EvRiaA~~~lm~---t~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 531 EVRMAAVLVLME---TKPSVALLQRIAELLNK 559 (574)
T ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHhh
Confidence 788887655432 22344566666665553
No 141
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.11 E-value=7.2 Score=45.54 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=90.2
Q ss_pred HHHHHHhhccccccc--chHhHHH-HHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHH
Q psy10461 968 GFGTIVNQLGKRVKP--YLPQICG-TILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEV 1044 (1359)
Q Consensus 968 aLg~Lae~Lg~~ikP--yl~qILp-iIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEV 1044 (1359)
....+++.....+.+ .+..++. +|.+.++..++.||..|..++|-.+-.=+ .+-...+..++..+..+..++
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~~~~~v 80 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQKDDEEV 80 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHhCCHHH
Confidence 344555555544544 3447664 45589999999999999999998874433 233345566666664456666
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCch--------hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC
Q psy10461 1045 LGSILGALKAIVNVIGMTKMTPPI--------KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGP 1102 (1359)
Q Consensus 1045 l~siL~AL~aIa~vlG~~~lsp~l--------~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~ 1102 (1359)
...++.++-.+....|.+.+.... ..++..+...+.+.++.+|..+++-+.++--.+.
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 667888888888777766443322 3577777778888899999999999999766443
No 142
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=93.95 E-value=0.54 Score=51.39 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=92.6
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHH-hhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCch
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEY-IGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE 1260 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~-IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~E 1260 (1359)
.+||.|..-|+.-+.--++-+.+.+..+.+. -+....+.++++++-|..+|+.+|..|...+..++..|.......|
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG-- 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG-- 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh--
Confidence 7899999999987776788888888888888 4445667788888899999999999999888888888854445555
Q ss_pred hHHhhhHHhhhcccc---------------cCChHHHHHHHHHHHHHHHhhchHHH--HHhHhh
Q psy10461 1261 DALTHLLNYVWPNIF---------------ETSPHLVQAFMDAVEGLRVALGPVRI--LQYVLQ 1307 (1359)
Q Consensus 1261 daliHlLnlvlPnI~---------------Etsp~Vi~~ileaLeaLr~aLG~~~l--l~~vLp 1307 (1359)
.++..++..++|.+- ....++..-|.++|+.+-..-|++-+ ..|.+|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IP 179 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIP 179 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCC
Confidence 556666666666332 12345666678888888888888765 445555
No 143
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.73 E-value=1 Score=52.13 Aligned_cols=103 Identities=28% Similarity=0.388 Sum_probs=71.1
Q ss_pred HHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchh---H----HHHHHHHHHHHhhc
Q psy10461 905 INRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE---D----VVMLNGFGTIVNQL 976 (1359)
Q Consensus 905 I~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~e---D----~v~lkaLg~Lae~L 976 (1359)
..+++..|-|| +++.|..|++++.. .-|-. +|+..|+.+|.++... + ..++.....++.+-
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~---dsGlh--------QLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRN---DSGLH--------QLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---CccHH--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 45556666666 67899999998864 22222 6788888888776432 2 34455566676666
Q ss_pred ccccccchHhHHHHHHHhhc------CCC----HHHHHHHHHHHHHHHHHhh
Q psy10461 977 GKRVKPYLPQICGTILWRLN------NKS----AKVRQQAADLISRIAVVMK 1018 (1359)
Q Consensus 977 g~~ikPyl~qILpiIl~LL~------Des----~~VR~aAAe~Is~LA~vl~ 1018 (1359)
.-++.||++||+|.|+.++- +++ ..+|.-||+++.-.+.-.+
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~ 319 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFS 319 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhh
Confidence 77889999999999987653 222 2489999998887776655
No 144
>KOG2933|consensus
Probab=93.67 E-value=0.63 Score=54.27 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=105.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch--hHHHH
Q psy10461 1074 RLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DVLAT 1151 (1359)
Q Consensus 1074 ~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe--dVlp~ 1151 (1359)
..+..|.++.|.+.-..+..|..++..-.+.+... +..+|..++.-|++....|=++|+-+++.|...++.. +-+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~-L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPM-LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667889888777888887776544444443 4557777778899999999999999999999988762 12222
Q ss_pred ----HHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhh
Q psy10461 1152 ----LLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1152 ----LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG 1214 (1359)
|+-.-.++++-+|..+..|+..+-....|..+++-|+..++...++||...+.++......+|
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 222222345568999889999999999999999999999999999999988888766666666
No 145
>KOG4524|consensus
Probab=93.53 E-value=8.8 Score=50.71 Aligned_cols=264 Identities=16% Similarity=0.171 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHH----HHHHHHHHHhc
Q psy10461 963 VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMG----HLGVVLYEYLG 1038 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~----~Ll~iLle~L~ 1038 (1359)
...++++|.++...|+...+++-.-+-.++..+.++++.|++.|-.++..|+....-...+.++. .++.-+-..|.
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 45678899999999988777776666667777888999999999999999998765211112221 12222222221
Q ss_pred ---c--cChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh----hCCC--chhh
Q psy10461 1039 ---E--EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD----RGPE--YVSA 1107 (1359)
Q Consensus 1039 ---D--e~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~----~g~e--~v~~ 1107 (1359)
. --|+|..-+ ..- ......|.+++++.++..++..-|-.--.....++-.|.. .+.+ ++..
T Consensus 646 ~~~~s~~~~~Vl~vV-------l~~-s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~ 717 (1014)
T KOG4524|consen 646 TSGMSPRVPDVLMVV-------LQY-SDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGH 717 (1014)
T ss_pred cCCCCchhHHHHHHH-------hhc-CCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHH
Confidence 1 012222111 111 1123456677777777777765553311111111111111 1111 1100
Q ss_pred -HHHHH------------HHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHhCch------------------------
Q psy10461 1108 -REWMR------------ICFELLELLKA----HKKAIRRATVNTFGYIAKAIGPH------------------------ 1146 (1359)
Q Consensus 1108 -kE~mr------------Ic~eLLelLkD----~~~sVR~AAv~tLg~IAk~~Gpe------------------------ 1146 (1359)
.+|+. -..++.....| -....+.-..+. ..-+....+
T Consensus 718 ~~d~~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~--~~~~~~dnee~~e~~~e~edens~~~d~ep~~~ 795 (1014)
T KOG4524|consen 718 IADQHISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFAS--KLREPDDNEEPEEREEEVEDENSEYTDTEPILP 795 (1014)
T ss_pred HHHHHHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhh--hccCCCcccCcCCCCCCccccccCCCCCCCCCC
Confidence 01111 00011111122 122222221110 000000000
Q ss_pred ---hHHHHH----HHhhhcccchhHHHHHHHHHHHhhhcC--cc-------ccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1147 ---DVLATL----LNNLKVQERQNRVCTTVAIAIVAETCS--PF-------TVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1147 ---dVlp~L----L~~Lk~qe~~VRv~ta~AIg~LAea~g--P~-------~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
.++-.+ ...|...+-.+|+.+...+..-...+. +. ...|.++..+++..+-+=..++++|..|+
T Consensus 796 ~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 796 DQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 011112 222333333467776655554333332 22 57778899999999999999999999999
Q ss_pred HHhhh-hchhhHHhHHHHHHHHHhccC
Q psy10461 1211 EYIGE-MGKDYIYAVTPLLEDALMDRD 1236 (1359)
Q Consensus 1211 e~IG~-~~kdYL~~VlPlLedaL~D~D 1236 (1359)
++.|. ..+-++..|+|-++..++|..
T Consensus 876 ~~sgDFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 876 KYSGDFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 345566889998888877654
No 146
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.52 E-value=4.4 Score=47.27 Aligned_cols=162 Identities=16% Similarity=0.218 Sum_probs=109.4
Q ss_pred hhchHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1068 IKDLLPRLT-PILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1068 l~~lLP~L~-~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
+..++..++ +-+++.+..||+.++.++|..+-...+.... .+.+ ++..++.....||..|++++--|.-.+|.+
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l---~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPL---FLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 346676666 5778899999999999999988754422111 1112 234455557899999999999999988863
Q ss_pred ---------------hHHHHHHHhhhcccchhHHHHHHHHHHH--hhhcCc-cccHHHHHHhcCCCCchhHHHHHHHHHH
Q psy10461 1147 ---------------DVLATLLNNLKVQERQNRVCTTVAIAIV--AETCSP-FTVLPALMNEYRVPELNVQNGVLKALSF 1208 (1359)
Q Consensus 1147 ---------------dVlp~LL~~Lk~qe~~VRv~ta~AIg~L--Aea~gP-~~VLPaLLnlLkDpE~nVR~~VlkaLs~ 1208 (1359)
.++..+...+.+.+..+|..++.++..+ +..+.+ ..++..|+-.+=+|...-....-++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 1333445556665556788777777764 555566 6899999998888876544567788888
Q ss_pred HHHHhhhh---chhhH-HhHHHHHHHHHhc
Q psy10461 1209 LFEYIGEM---GKDYI-YAVTPLLEDALMD 1234 (1359)
Q Consensus 1209 Iae~IG~~---~kdYL-~~VlPlLedaL~D 1234 (1359)
+|+..... .+..+ ...+|.+..+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 88887542 22333 4566766665543
No 147
>KOG2062|consensus
Probab=93.43 E-value=6 Score=50.82 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=65.6
Q ss_pred chHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCchh
Q psy10461 1070 DLLPRLTPI-LKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHD 1147 (1359)
Q Consensus 1070 ~lLP~L~~L-LkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD-~~~sVR~AAv~tLg~IAk~~Gped 1147 (1359)
..+.++... .+|-+.-||++|.-+||-+.-+-+ ..|...+.+|.+ ++.+||..|+-+||.-+.--|...
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 455555554 568888888888888877643222 145555677765 478888888888888777666655
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHhhhcC
Q psy10461 1148 VLATLLNNLKVQERQNRVCTTVAIAIVAETCS 1179 (1359)
Q Consensus 1148 Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g 1179 (1359)
.+..|-++.+.....||-.+..|.+.|-=.|.
T Consensus 625 Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 625 AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 55544444444445678887777776654443
No 148
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.43 E-value=10 Score=46.78 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=48.3
Q ss_pred ccHHHHHHhcC-CCCchhHHHHHHHHHHHHHHhhhhchhhHH--hHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1182 TVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYIY--AVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1182 ~VLPaLLnlLk-DpE~nVR~~VlkaLs~Iae~IG~~~kdYL~--~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
.++..|.+.|. ..++.+--.+|.-|+.++.+.. .++..+. -....+..++.++|..||.-|..++..|
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P-~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYP-RGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc-cHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 68899999984 3455566778888888888762 2344332 2455566688899999998888777765
No 149
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.38 E-value=7.8 Score=46.97 Aligned_cols=191 Identities=17% Similarity=0.236 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhchHHHHHH----Hhc-----CCCHHHHHHHHHHHHHHHhhCC---CchhhHHHHHHH
Q psy10461 1047 SILGALKAIVNVIGMTKMTPPIKDLLPRLTP----ILK-----NRHEKVQENCIDLVGRIADRGP---EYVSAREWMRIC 1114 (1359)
Q Consensus 1047 siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~----LLk-----Dr~~rVR~AAielIg~IA~~g~---e~v~~kE~mrIc 1114 (1359)
.+|..+.-.....+.. .+.++|.++. +|. -+...+-..+++.+..++.... -|-.+..+..||
T Consensus 115 ~i~~~~~ly~~kY~e~-----f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 115 WICENLNLYAEKYEEE-----FEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 3555555555554322 4456666555 332 2334566788888888766321 121222233455
Q ss_pred HHH-H----------HHHHh-------------hHHHHHHHHHHHHHHHHHHhCch--hHHH----HHHHhhh---cccc
Q psy10461 1115 FEL-L----------ELLKA-------------HKKAIRRATVNTFGYIAKAIGPH--DVLA----TLLNNLK---VQER 1161 (1359)
Q Consensus 1115 ~eL-L----------elLkD-------------~~~sVR~AAv~tLg~IAk~~Gpe--dVlp----~LL~~Lk---~qe~ 1161 (1359)
..+ + ++..| ...+-|+||++-+..+++.++.+ .++. .++.... ..++
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w 269 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNW 269 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-H
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccH
Confidence 432 1 22111 13568889999999999988764 2222 2232211 2233
Q ss_pred hhHHHHHHHHHHHhhhc-----C-----c------c---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHH
Q psy10461 1162 QNRVCTTVAIAIVAETC-----S-----P------F---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY 1222 (1359)
Q Consensus 1162 ~VRv~ta~AIg~LAea~-----g-----P------~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~ 1222 (1359)
...-++...++.+|... | + | .|+|-|. .--+..|-+|-.+||.+..+-..+. ++.+.
T Consensus 270 ~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---~~~l~ 345 (370)
T PF08506_consen 270 RSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---KEQLL 345 (370)
T ss_dssp HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----HHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---HHHHH
Confidence 34555556666665433 1 0 1 4566555 2224456688888888766555443 56777
Q ss_pred hHHHHHHHHHhccChHHHHHHHHH
Q psy10461 1223 AVTPLLEDALMDRDLVHRQTACAT 1246 (1359)
Q Consensus 1223 ~VlPlLedaL~D~D~~VRqtA~sa 1246 (1359)
.++|.+...|.+++.+|+.-|+-+
T Consensus 346 ~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 346 QIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhhhhh
Confidence 899999999999998888666544
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.19 E-value=1.4 Score=48.17 Aligned_cols=148 Identities=21% Similarity=0.333 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhh-ccCchhHHHHHHHHHHHHhhcccccccchHhHHHHHHHhhcC
Q psy10461 919 YRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF-QEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNN 997 (1359)
Q Consensus 919 VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplL-qd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~D 997 (1359)
||..|+.+|..+++..++.. +-++-+.| -+.. +. -.+.-+.|+ .-++.|
T Consensus 2 vR~~Al~~L~al~k~~~~r~---------l~~yW~~llP~~~----------------~~--~~~~~~sLl---t~il~D 51 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRS---------LFGYWPALLPDSV----------------LQ--GRPATPSLL---TCILKD 51 (182)
T ss_pred hhHHHHHHHHHHHHhcCCce---------eHhhHHHHCCCCC----------------Cc--CCCCCcchh---HHHHcC
Confidence 79999999999999877662 22222222 2210 00 112223333 346689
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhh----hH-----------HhHHHHHHHHHHHH----h-cccChHHHHHHHHHHHHHHH
Q psy10461 998 KSAKVRQQAADLISRIAVVMKTC----QE-----------EKLMGHLGVVLYEY----L-GEEYPEVLGSILGALKAIVN 1057 (1359)
Q Consensus 998 es~~VR~aAAe~Is~LA~vl~~~----~e-----------~~lL~~Ll~iLle~----L-~De~pEVl~siL~AL~aIa~ 1057 (1359)
.++.||.+|+.+++.|-+-.+++ .+ ...+...+.-+... | .|..+.++..++.++..++.
T Consensus 52 p~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~ 131 (182)
T PF13251_consen 52 PSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQ 131 (182)
T ss_pred CchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHc
Confidence 99999999999999886644322 11 01233333333332 3 45567777788899998888
Q ss_pred HhCCCCCCCchhchHHHHHH----HhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1058 VIGMTKMTPPIKDLLPRLTP----ILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1058 vlG~~~lsp~l~~lLP~L~~----LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
..-...+.+ ++++.++. ++.+++..||.++...++.+..
T Consensus 132 ~tPY~rL~~---~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 132 ATPYHRLPP---GLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred cCChhhcCH---hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 776666644 55555544 6788889999999999998866
No 151
>KOG0413|consensus
Probab=93.02 E-value=12 Score=49.41 Aligned_cols=200 Identities=11% Similarity=0.052 Sum_probs=112.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHH
Q psy10461 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLAT 1151 (1359)
Q Consensus 1072 LP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~ 1151 (1359)
...+...|-|+.+.||..++..+..+-+...--+... + +| .+..--.|...++|+++..++..=...+..+..-..
T Consensus 474 ~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~s-I--l~-~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~ 549 (1529)
T KOG0413|consen 474 YNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFS-I--LC-ATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTD 549 (1529)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHH-H--HH-HhcCCccccchhHHHhchhhhhcccCcccccccchh
Confidence 3334445779999999999999998866321111100 0 11 111223466788888877655432222111111111
Q ss_pred HHHhhhcccchhHHHHHHHHHHHhhhc---CccccHHHHHHhcC-CCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHH
Q psy10461 1152 LLNNLKVQERQNRVCTTVAIAIVAETC---SPFTVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL 1227 (1359)
Q Consensus 1152 LL~~Lk~qe~~VRv~ta~AIg~LAea~---gP~~VLPaLLnlLk-DpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPl 1227 (1359)
++. ++ -|+..=+. +.+-+.| -...|+-++++-++ |...+|+..+|.-+.....+|+..+ ....++-+
T Consensus 550 ~l~----~~--~~ii~d~~-~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~--~fe~~L~i 620 (1529)
T KOG0413|consen 550 LLL----DE--QQIIQDFK-LKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEAS--KFEVVLSI 620 (1529)
T ss_pred hcC----cc--hhhhhhcc-hhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhh--cchhHHHH
Confidence 100 00 01110000 1111112 12368889999998 7788899999999988888888632 22456889
Q ss_pred HHHHHhccChHHHHHHHHHHHHHHhhhcCCC-chhHHhhhHHhhhcccccCChHHHHHHHH
Q psy10461 1228 LEDALMDRDLVHRQTACATIKHMALGVYGFG-CEDALTHLLNYVWPNIFETSPHLVQAFMD 1287 (1359)
Q Consensus 1228 LedaL~D~D~~VRqtA~saIk~LAl~~~glG-~EdaliHlLnlvlPnI~Etsp~Vi~~ile 1287 (1359)
|+++..|+-..||.++|..+..+-+.-+.+- ...+-.| -+.+.|.|+...|..+.+.
T Consensus 621 Lq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~---~li~~~~d~es~v~e~a~~ 678 (1529)
T KOG0413|consen 621 LQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLH---TLISMLNDTESDVTEHARK 678 (1529)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHH---HHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999988754333221 1111112 2445555555555544443
No 152
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.96 E-value=3 Score=49.23 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=125.5
Q ss_pred HHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 905 INRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 905 I~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
..+|-+-|.-. -.-|-..|++....|-..+|++.+...+- ....+++|+|...+..+ ...++.+....-.+|..++|
T Consensus 56 ~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~-i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p 134 (307)
T PF04118_consen 56 SKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLP-IYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRP 134 (307)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHH
Confidence 34444444422 34788999999999999999986554322 35688999998877766 57788888888888888899
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
.+..++..+++-+.|++..+-..+..++-.+...++. ..+...+...+. ..|+++.+++. -+...+...
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~---~~F~~~lwl~ii-----~sp~~Rl~al~---~l~~~l~~~ 203 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD---KYFWQCLWLCII-----TSPSRRLGALN---YLLRRLPKF 203 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh---hHHHHHHHHHHh-----cCcchhHHHHH---HHHHhCCcc
Confidence 9999999999999999999999999999999888763 222333322222 25666654433 222222111
Q ss_pred C--------------CCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1063 K--------------MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1063 ~--------------lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
. +.+...=++..+...+.|.+--|++.+.+++-.--.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 204 QNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred cccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 1 122223355566667789988999999988876443
No 153
>KOG1058|consensus
Probab=92.79 E-value=41 Score=43.89 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhh-h------cccchhHHHHHHHHHHHhhhcCc--ccc
Q psy10461 1113 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNL-K------VQERQNRVCTTVAIAIVAETCSP--FTV 1183 (1359)
Q Consensus 1113 Ic~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~L-k------~qe~~VRv~ta~AIg~LAea~gP--~~V 1183 (1359)
+..++|.+|....-+||+-+.+..-.|+..-+.+++...|-..+ + +++.+.|.....++...|-.+.. .++
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv 397 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV 397 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH
Confidence 44455666777777888887777666666656666655542221 1 12234566655555554444322 267
Q ss_pred HHHHHHhcCCCCchhHHHHH
Q psy10461 1184 LPALMNEYRVPELNVQNGVL 1203 (1359)
Q Consensus 1184 LPaLLnlLkDpE~nVR~~Vl 1203 (1359)
+|.||.-+-|.....-..|+
T Consensus 398 V~~ll~fisD~N~~aas~vl 417 (948)
T KOG1058|consen 398 VSLLLDFISDSNEAAASDVL 417 (948)
T ss_pred HHHHHHHhccCCHHHHHHHH
Confidence 88888888776553333333
No 154
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.76 E-value=1.1 Score=48.01 Aligned_cols=114 Identities=16% Similarity=0.305 Sum_probs=76.1
Q ss_pred HhHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccch--------------------h-------------hhHHHHH
Q psy10461 902 SEIINRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADI--------------------D-------------SRLEEQL 947 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l--------------------~-------------~~L~~~L 947 (1359)
.+++..|+..||.+ ++.+|+.|++.|+.+.. +-|..- + +-.-.-.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 45678888888866 79999999999986543 222100 0 0000123
Q ss_pred HHHHHHhhccCchhH--HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy10461 948 IDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVV 1016 (1359)
Q Consensus 948 ld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~v 1016 (1359)
++.++-.|+|++... ..++.++-.++..+|....||+.+++|.++..++.-+...|+..-..++.|..+
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345555566665533 456677777777788777899999999999999877777776666666655543
No 155
>KOG0168|consensus
Probab=92.71 E-value=2.8 Score=54.26 Aligned_cols=141 Identities=17% Similarity=0.194 Sum_probs=94.7
Q ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCch-------hHHHHHHHhhhcccch-hHHHHHHHHHHHhhhcCc---
Q psy10461 1113 ICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCSP--- 1180 (1359)
Q Consensus 1113 Ic~eLLelLkD-~~~sVR~AAv~tLg~IAk~~Gpe-------dVlp~LL~~Lk~qe~~-VRv~ta~AIg~LAea~gP--- 1180 (1359)
+...|+.+|++ ++..|-..|+++|-++.+.++.. +.+|.++..|..-++- |-..+..|+..|+..=+.
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL 291 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAIL 291 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHH
Confidence 44455667776 47889999999999999998873 4677777666543331 333445666666533211
Q ss_pred -cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhh
Q psy10461 1181 -FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG 1253 (1359)
Q Consensus 1181 -~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~ 1253 (1359)
..-|-+.+.-|.==..++|..++...+.+|+.|....-+|+-..+|+|..+|...|..+-..+|..+..++-+
T Consensus 292 ~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 292 QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 1222222222222235678888888888999888766678889999999999999877777777777777633
No 156
>KOG1993|consensus
Probab=92.70 E-value=12 Score=48.52 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHh-hCCCchhhHHHHHHHH-HHHHHHHhhHH-HHHHHHHHHHHHHHHHhC--chhHHHHH-------H
Q psy10461 1086 VQENCIDLVGRIAD-RGPEYVSAREWMRICF-ELLELLKAHKK-AIRRATVNTFGYIAKAIG--PHDVLATL-------L 1153 (1359)
Q Consensus 1086 VR~AAielIg~IA~-~g~e~v~~kE~mrIc~-eLLelLkD~~~-sVR~AAv~tLg~IAk~~G--pedVlp~L-------L 1153 (1359)
.|+-++.++|.-.. .+... .-++|- .++.+|.|.++ -||-++++++..+..-|. ++.++|.+ .
T Consensus 503 iRRRVa~ilg~Wvsvq~~~e-----~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf 577 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQQKLE-----LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF 577 (978)
T ss_pred HHHHHHHHHhhhhheechHh-----HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence 58888899987655 33322 223332 45788999844 589999999999998765 35555543 2
Q ss_pred Hhhhc-ccchhHHHHHHHHHH----HhhhcCcc--ccHHHHHHhcC--CCCchhHHHHHHHHHHHHHHhhhhchhhHHhH
Q psy10461 1154 NNLKV-QERQNRVCTTVAIAI----VAETCSPF--TVLPALMNEYR--VPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 1224 (1359)
Q Consensus 1154 ~~Lk~-qe~~VRv~ta~AIg~----LAea~gP~--~VLPaLLnlLk--DpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~V 1224 (1359)
..+++ ++-.-|+.+...++. +++.+.|+ +++..|-++-+ ..++-.|.+++.+|..+...+|..+....+..
T Consensus 578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL 657 (978)
T KOG1993|consen 578 KLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFL 657 (978)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 22331 222235555555554 45555665 33333333333 25677999999999999999998554444455
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHH-HHhhhcCCCchhHHhhhHHhhhcccccCChHHH
Q psy10461 1225 TPLLEDALMDRDLVHRQTACATIKH-MALGVYGFGCEDALTHLLNYVWPNIFETSPHLV 1282 (1359)
Q Consensus 1225 lPlLedaL~D~D~~VRqtA~saIk~-LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi 1282 (1359)
.|.++-...-+...|.......+.- +.+..+.--..+.+.-+.+.+.|.|...+.+++
T Consensus 658 ~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~ 716 (978)
T KOG1993|consen 658 YPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP 716 (978)
T ss_pred HHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH
Confidence 5555543322334444322211111 000001001224455566666665544444444
No 157
>KOG1967|consensus
Probab=92.68 E-value=2 Score=56.01 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=109.4
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH------------HhHHHHHHHHHHHHhcccChHHHHHHH
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE------------EKLMGHLGVVLYEYLGEEYPEVLGSIL 1049 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e------------~~lL~~Ll~iLle~L~De~pEVl~siL 1049 (1359)
|-...|.--++.++++++ +=..|++..+-+......|.. +-+...+.|+|.+........+..+.+
T Consensus 811 ~~s~~ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl 888 (1030)
T KOG1967|consen 811 PESSEIAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYL 888 (1030)
T ss_pred cccchHHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHH
Confidence 334455555556666532 334455554444332222111 234556677777766533344555666
Q ss_pred HHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhH---H
Q psy10461 1050 GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK---K 1126 (1359)
Q Consensus 1050 ~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~---~ 1126 (1359)
.+|.-+...+..+.+-|.+..++|-+.+-+.=.+..||..+...|..+-.......+.+ +--+...++.+-+|++ -
T Consensus 889 ~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~-~~Tlvp~lLsls~~~~n~~~ 967 (1030)
T KOG1967|consen 889 EALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH-LSTLVPYLLSLSSDNDNNMM 967 (1030)
T ss_pred HHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH-HhHHHHHHHhcCCCCCcchh
Confidence 77777766655555555566777777776666667788888888877765444333333 2223333333334443 3
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc--ccHHHHHHhcCCCCchhHHHHHH
Q psy10461 1127 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLK 1204 (1359)
Q Consensus 1127 sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~--~VLPaLLnlLkDpE~nVR~~Vlk 1204 (1359)
.||..|.+.++.|.+..+.. .|-|| .|+.+|...|.|+.+-||..+..
T Consensus 968 ~VR~~ALqcL~aL~~~~P~~------------------------------~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 968 VVREDALQCLNALTRRLPTK------------------------------SLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHHHHHHHHHHHhccCCCc------------------------------ccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 56777777777766654431 12233 57778888888888888877666
Q ss_pred HH
Q psy10461 1205 AL 1206 (1359)
Q Consensus 1205 aL 1206 (1359)
+=
T Consensus 1018 tR 1019 (1030)
T KOG1967|consen 1018 TR 1019 (1030)
T ss_pred Hh
Confidence 54
No 158
>KOG2933|consensus
Probab=92.67 E-value=0.95 Score=52.86 Aligned_cols=152 Identities=14% Similarity=0.214 Sum_probs=107.6
Q ss_pred ChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccc
Q psy10461 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGK 978 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~ 978 (1359)
..+..+...+..|.+++|..-.-++..|..++. +-++.+...|.. ++=.++-.+++.-+.+ .+++.+++.+...+++
T Consensus 85 ~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 85 DPEAALKQALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred cHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 334557788999999999999999999998887 445645443222 2222233344444555 7888999999999998
Q ss_pred ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 979 ~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
.+..-+..++-.|+....+.+..||..|-..|..+.....+ ..++.+|++. ++.-++-++...+-++..++..
T Consensus 163 ~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---~~~L~~L~~~----~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 163 SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---QKLLRKLIPI----LQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---HHHHHHHHHH----Hhhhchhhhhhhhcccccccee
Confidence 87667777788888888888999999999999999887763 3445555554 4444666666655555555555
Q ss_pred hC
Q psy10461 1059 IG 1060 (1359)
Q Consensus 1059 lG 1060 (1359)
+|
T Consensus 236 l~ 237 (334)
T KOG2933|consen 236 LG 237 (334)
T ss_pred cc
Confidence 54
No 159
>KOG0392|consensus
Probab=92.54 E-value=2.8 Score=56.31 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=98.8
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchh
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD 1147 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gped 1147 (1359)
+..++..+...+-+..|.+|.-++-.+-.|...-....... . |.|. -+|..++.+|..+.+++-++.
T Consensus 75 f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~-~----------led~--~~rll~v~~Ldrf~dfisd~v 141 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYE-L----------LEDL--LIRLLCVLALDRFGDFISDNV 141 (1549)
T ss_pred HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHH-H----------HHHH--HHHHHHHHHHHHhcccccccc
Confidence 45566666666778999999888777777766433222221 1 1111 355666666666666544222
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc---cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhH
Q psy10461 1148 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP---FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 1224 (1359)
Q Consensus 1148 Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP---~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~V 1224 (1359)
+. .||.+++.+++.+-+...+ +..+-.+..+++.+.-++|.+=+-.+...+..--......+..|
T Consensus 142 va------------pVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~v 209 (1549)
T KOG0392|consen 142 VA------------PVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLV 209 (1549)
T ss_pred hh------------hhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2466667777766655543 25667777777777777777666665333322122222444577
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHhhh
Q psy10461 1225 TPLLEDALMDRDLVHRQTACATIKHMALGV 1254 (1359)
Q Consensus 1225 lPlLedaL~D~D~~VRqtA~saIk~LAl~~ 1254 (1359)
++...+-+.|.+.+||..|++.+-.++...
T Consensus 210 l~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 210 LDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 787777899999999988887776665443
No 160
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.52 E-value=27 Score=43.32 Aligned_cols=197 Identities=13% Similarity=0.189 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhccCch-hHHHHHHHHHHHHhhcccccccchHhHHH----HHHHhhcC-CCHHHHHHHHHHHHHHHHHhh
Q psy10461 945 EQLIDGILYAFQEQTT-EDVVMLNGFGTIVNQLGKRVKPYLPQICG----TILWRLNN-KSAKVRQQAADLISRIAVVMK 1018 (1359)
Q Consensus 945 ~~Lld~LLplLqd~~~-eD~v~lkaLg~Lae~Lg~~ikPyl~qILp----iIl~LL~D-es~~VR~aAAe~Is~LA~vl~ 1018 (1359)
..++..|+.++....+ |.+.+++++-+++..+.+.+.|+...++. ++...++| .+|..=.=.=|+|+.+.....
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 4677888877765443 44788888888888888877777655554 44455555 466666666688888866644
Q ss_pred hhhHH---hHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHH---HHHHH
Q psy10461 1019 TCQEE---KLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ---ENCID 1092 (1359)
Q Consensus 1019 ~~~e~---~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR---~AAie 1092 (1359)
....+ .+-..++|++..-|.++-.|-.--+.+-|..+.+.-....+++...+++|.+.. ..-|.-+ -+.+.
T Consensus 105 ~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~---p~lWe~~gniPalvr 181 (435)
T PF03378_consen 105 EADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLS---PALWERRGNIPALVR 181 (435)
T ss_dssp GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTS---GGGGGSTTTHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcC---cchhccCCCcCcHHH
Confidence 22222 455667777777776655555555556666666654323344445555555544 3333221 45566
Q ss_pred HHHHHHhhCCCchhh-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1093 LVGRIADRGPEYVSA-REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1093 lIg~IA~~g~e~v~~-kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
++..+..+++.++.. ..+..++..+-.++.... --..+.+.|..|-..++.+
T Consensus 182 LL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~ 234 (435)
T PF03378_consen 182 LLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPE 234 (435)
T ss_dssp HHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHH
Confidence 666666666555432 122333333333333221 1135778888888888775
No 161
>KOG4413|consensus
Probab=92.07 E-value=5.6 Score=46.88 Aligned_cols=272 Identities=18% Similarity=0.178 Sum_probs=144.1
Q ss_pred HhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCc-hhhHH-H--H
Q psy10461 1036 YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEY-VSARE-W--M 1111 (1359)
Q Consensus 1036 ~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~-v~~kE-~--m 1111 (1359)
.+.+...|....|++.|..+-+..-..++ ..++.|.+--=+...+..|+.-+...++.|...|... +.+.. + .
T Consensus 51 feNenhrekttlcVscLERLfkakegahl---apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNa 127 (524)
T KOG4413|consen 51 FENENHREKTTLCVSCLERLFKAKEGAHL---APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNA 127 (524)
T ss_pred cccccccchhhhHHHHHHHHHhhccchhh---chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhh
Confidence 33444455555566777777665432223 2356666655566677788888888889888866532 22210 0 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc-hhHHH-HHHH-----hhhcc-cchhHHHHHHHHHH-------Hhh
Q psy10461 1112 RICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-HDVLA-TLLN-----NLKVQ-ERQNRVCTTVAIAI-------VAE 1176 (1359)
Q Consensus 1112 rIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp-edVlp-~LL~-----~Lk~q-e~~VRv~ta~AIg~-------LAe 1176 (1359)
.+...+++.....+.+|-.+|++++..|+.+-.. +.+.+ .+++ ||... +.-+|+-+..-|-. .+.
T Consensus 128 eilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 1222334445667889999999999999875221 11111 1121 11111 11234433322222 234
Q ss_pred hcCccccHHHHHHhcCC-CCchhHHHHHHHHHHHHHHhhhhchhhHH--hHHHHHHHHHh----ccChHHHHHHHHHHHH
Q psy10461 1177 TCSPFTVLPALMNEYRV-PELNVQNGVLKALSFLFEYIGEMGKDYIY--AVTPLLEDALM----DRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1177 a~gP~~VLPaLLnlLkD-pE~nVR~~VlkaLs~Iae~IG~~~kdYL~--~VlPlLedaL~----D~D~~VRqtA~saIk~ 1249 (1359)
.|....++..|..+++- .+.-|+.+++.-+..+++.- .+.+|+. -++.++-+.+. |.....|..- ...+-
T Consensus 208 eckkSGLldlLeaElkGteDtLVianciElvteLaete--HgreflaQeglIdlicnIIsGadsdPfekfralm-gfgkf 284 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE--HGREFLAQEGLIDLICNIISGADSDPFEKFRALM-GFGKF 284 (524)
T ss_pred HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh--hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHH-HHHHH
Confidence 44455799999999986 66778888888877777653 3466663 35555555443 2233344211 11111
Q ss_pred HHh-hhcCCCchhHHhhhHHhhhc----ccccCChHHHHHHHHHHHHHHHhh-chHH-------HHHhHhhhhccccc
Q psy10461 1250 MAL-GVYGFGCEDALTHLLNYVWP----NIFETSPHLVQAFMDAVEGLRVAL-GPVR-------ILQYVLQGLFHPAR 1314 (1359)
Q Consensus 1250 LAl-~~~glG~EdaliHlLnlvlP----nI~Etsp~Vi~~ileaLeaLr~aL-G~~~-------ll~~vLpgLfhpA~ 1314 (1359)
+.- .+.. -.+.++..-++.+.. .|.-.+|+.+...+++++.+-... |.+. -..+++.-+||-..
T Consensus 285 fgkeaimd-vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqna 361 (524)
T KOG4413|consen 285 FGKEAIMD-VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNA 361 (524)
T ss_pred hcchHHhh-cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccc
Confidence 100 0000 022333344444444 444488899988999886553322 2233 33455666665543
No 162
>KOG1993|consensus
Probab=91.97 E-value=52 Score=43.22 Aligned_cols=187 Identities=14% Similarity=0.217 Sum_probs=110.6
Q ss_pred HHhhhcCCC-CHHHHHHHHHHHHHHHHhc--CccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccc
Q psy10461 907 RVVDDLKDE-NEQYRKMVMESIEKTMSNL--GAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 907 ~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~L--Gpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ik 981 (1359)
.++..+.|. +-.||..+++++..++... .++.--+ ..+.+...+..+++.-+.-| -.++..++++++..+..+.
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp-~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP-YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 356678888 8899999999999988633 3332112 12334444444444433323 5778899999999999999
Q ss_pred cchHhHHHHHH--HhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 982 PYLPQICGTIL--WRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 982 Pyl~qILpiIl--~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
||..+|+.++- |.-..+++..|-+..-.+-++...++... ..+-.-++|++--...=..|+.+.-.-.++.--...+
T Consensus 609 P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS-~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L 687 (978)
T KOG1993|consen 609 PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS-FEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTL 687 (978)
T ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC-ccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHH
Confidence 99999998864 44455888999888888888887776321 2333334444333322123333222212222112222
Q ss_pred C-CCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1060 G-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1060 G-~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
+ ...+.|.+-.++|.+.+++.-.++..| .+.++|.+
T Consensus 688 ~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~s 724 (978)
T KOG1993|consen 688 MNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISS 724 (978)
T ss_pred hcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHH
Confidence 1 133555566677777777765555443 34445554
No 163
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=91.74 E-value=1.2 Score=48.89 Aligned_cols=95 Identities=18% Similarity=0.281 Sum_probs=72.4
Q ss_pred cccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHH---
Q psy10461 897 RLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTI--- 972 (1359)
Q Consensus 897 ~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~L--- 972 (1359)
++++-...++.+++.|...++++|-.|.+.+.++...-|.+.+- .+.++|+-.+-.+|+..+.+. ..+++++..+
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil-PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL-PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 35667777999999999999999999999999999973444222 234445555556666666666 7777787777
Q ss_pred HhhcccccccchHhHHHHHH
Q psy10461 973 VNQLGKRVKPYLPQICGTIL 992 (1359)
Q Consensus 973 ae~Lg~~ikPyl~qILpiIl 992 (1359)
....|..+.||..||+|++.
T Consensus 111 ~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 66678788999999999876
No 164
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.35 E-value=1.9 Score=47.23 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCchhchHHHH------------HHHhcCCCHHHHHHHHHHHHHHHhhCCCc
Q psy10461 1044 VLGSILGALKAIVNVIGMTKMTPPIKDLLPRL------------TPILKNRHEKVQENCIDLVGRIADRGPEY 1104 (1359)
Q Consensus 1044 Vl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L------------~~LLkDr~~rVR~AAielIg~IA~~g~e~ 1104 (1359)
++.+++.+|.++++..+.+.+..+-..++|.- +.+++|.+.+||.+++..+..|-+.+..|
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~ 74 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF 74 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH
Confidence 45567788888888866665555555555554 33678999999999999999986654433
No 165
>KOG2274|consensus
Probab=91.23 E-value=65 Score=42.90 Aligned_cols=108 Identities=18% Similarity=0.106 Sum_probs=69.5
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcc----
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLG---- 977 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg---- 977 (1359)
|-..|+..+-|++.-+|..+..++..|+...=|+.|++ +++.++-++.+ .++. +-+++++..+...+.
T Consensus 91 IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpE-----lv~~i~~~l~~-~n~n~i~~am~vL~el~~ev~~ee~ 164 (1005)
T KOG2274|consen 91 IREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPE-----LVPFILKLLSS-GNENSIHGAMRVLAELSDEVDVEEM 164 (1005)
T ss_pred HHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHH-----HHHHHHHHHhc-cchhhhhhHHHHHHHHHHHHHHHHH
Confidence 45556666679999999999999999999887887764 77777777775 3333 566666666665553
Q ss_pred cccccchHhHHHHHHHhhcCCCHHHHHHHH--HHHHHHHHHh
Q psy10461 978 KRVKPYLPQICGTILWRLNNKSAKVRQQAA--DLISRIAVVM 1017 (1359)
Q Consensus 978 ~~ikPyl~qILpiIl~LL~Des~~VR~aAA--e~Is~LA~vl 1017 (1359)
.++.+....=+-.+....+..+-..|..|| .....++..+
T Consensus 165 ~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li 206 (1005)
T KOG2274|consen 165 FFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLI 206 (1005)
T ss_pred hcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHH
Confidence 233333333333444556666777777776 3334443333
No 166
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=91.01 E-value=85 Score=45.43 Aligned_cols=267 Identities=10% Similarity=0.107 Sum_probs=144.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCcc-chhh-hHHHHHHHHHHHhhccCch-hH-HHHHHHHHHHHhhcccccccchHhHH
Q psy10461 913 KDENEQYRKMVMESIEKTMSNLGAA-DIDS-RLEEQLIDGILYAFQEQTT-ED-VVMLNGFGTIVNQLGKRVKPYLPQIC 988 (1359)
Q Consensus 913 KDes~~VR~~Aa~~L~~Ia~~LGpe-~l~~-~L~~~Lld~LLplLqd~~~-eD-~v~lkaLg~Lae~Lg~~ikPyl~qIL 988 (1359)
-+.+..++.-|+..|.+++..+-.. ++.. +.-..+++-|...++.... +. +.+++++..++...+..++.==..|+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 3555668888888888888655432 1111 2223566666666664444 33 78889999999888877776667788
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHH-hhhhhH--HhHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHh--C--
Q psy10461 989 GTILWRLNNKSAKVRQQAADLISRIAVV-MKTCQE--EKLMGHLGVVLYEYLGE-EYPEVLGSILGALKAIVNVI--G-- 1060 (1359)
Q Consensus 989 piIl~LL~Des~~VR~aAAe~Is~LA~v-l~~~~e--~~lL~~Ll~iLle~L~D-e~pEVl~siL~AL~aIa~vl--G-- 1060 (1359)
.+|.....++++.+=+.|=+++..|... +..... ...+..++..|.+.-.. .+.++-...++.|..++..+ +
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 8888777777766656666666655432 110000 12222333333333321 23444444555555443332 0
Q ss_pred -C---------------------CCC---CC---chhchHHHHHH---HhcCCCHHHHHHHHHHHHHHHh-hCCCchhhH
Q psy10461 1061 -M---------------------TKM---TP---PIKDLLPRLTP---ILKNRHEKVQENCIDLVGRIAD-RGPEYVSAR 1108 (1359)
Q Consensus 1061 -~---------------------~~l---sp---~l~~lLP~L~~---LLkDr~~rVR~AAielIg~IA~-~g~e~v~~k 1108 (1359)
. ... .. ...=.+|-+.. ++.|.-..||..|++.+-.+-. .|..|-+..
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~ 1386 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPL 1386 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 0 000 00 00114444444 4668888999999998877655 555444443
Q ss_pred HHHHHHHH-HHHHHHhh--------------------------HHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHhh
Q psy10461 1109 EWMRICFE-LLELLKAH--------------------------KKAIRRATVNTFGYIAKAIGPH-----DVLATLLNNL 1156 (1359)
Q Consensus 1109 E~mrIc~e-LLelLkD~--------------------------~~sVR~AAv~tLg~IAk~~Gpe-----dVlp~LL~~L 1156 (1359)
|..+|.. |+|++..- ...+...++.+|..+...|..- ..++.++..|
T Consensus 1387 -W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll 1465 (1780)
T PLN03076 1387 -WERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLL 1465 (1780)
T ss_pred -HHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777763 34553220 1125677888888877766541 2333333333
Q ss_pred h---ccc-chhHHHHHHHHHHHhhhcCc
Q psy10461 1157 K---VQE-RQNRVCTTVAIAIVAETCSP 1180 (1359)
Q Consensus 1157 k---~qe-~~VRv~ta~AIg~LAea~gP 1180 (1359)
. .|+ ..+-.+...++..+....|.
T Consensus 1466 ~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1466 VSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 2 233 33333335566655555543
No 167
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.72 E-value=4.2 Score=49.76 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=125.9
Q ss_pred ccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch--hHHHHHHHHHHHH
Q psy10461 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT--EDVVMLNGFGTIV 973 (1359)
Q Consensus 896 A~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~--eD~v~lkaLg~La 973 (1359)
+++.=....+..|+..+..++++-|...-..+.++-..+... ..-.+..+.+.|+-++-+... +..-++..+|.+.
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~--r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL--RSFIRKSINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT--HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 455555567888999999999999999999999998877654 233333444555544443332 3377889999999
Q ss_pred hhcccccc-cchHhHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy10461 974 NQLGKRVK-PYLPQICGTILWRLNNKSAKV-RQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA 1051 (1359)
Q Consensus 974 e~Lg~~ik-Pyl~qILpiIl~LL~Des~~V-R~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~A 1051 (1359)
++...-++ .|..-+..+|++|.+.+.-.. -.+.+.++..+..-= ..+...++..|+..---.++.--...++-
T Consensus 204 ~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-----p~l~~~~i~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 204 NGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-----PSLAEPVIKGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp TT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH------GGGHHHHHHHHHHHS-SS-HHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHhCCCCCchhHHHHHHH
Confidence 98876554 566677788888888764322 344444444443211 12222222222222111111111123344
Q ss_pred HHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH--HHhhCCCchhhHHHHHHHHHHHHHH----Hh-h
Q psy10461 1052 LKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR--IADRGPEYVSAREWMRICFELLELL----KA-H 1124 (1359)
Q Consensus 1052 L~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~--IA~~g~e~v~~kE~mrIc~eLLelL----kD-~ 1124 (1359)
+..+...+...........++..+...+...|..|-+.|+..+.. +...-.++ ...+++ .+++-| +. |
T Consensus 279 l~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~--~~~i~p---~i~~~L~~~~~~HW 353 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQN--SRVILP---IIFPALYRNSKNHW 353 (409)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCT--HHHHHH---HHHHHHSSTTSS-S
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhC--hHHHHH---HHHHHHHHHHHHHh
Confidence 444444332221222233445555556778888887777765543 11110000 011222 223333 22 4
Q ss_pred HHHHHHHHHHHHHHHHHHhCc
Q psy10461 1125 KKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1125 ~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
+..||..|.+++..+.+. ++
T Consensus 354 n~~Vr~~a~~vl~~l~~~-d~ 373 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILMEM-DP 373 (409)
T ss_dssp STTHHHHHHHHHHHHHTT-SH
T ss_pred hHHHHHHHHHHHHHHHHh-CH
Confidence 778999999999998885 44
No 168
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.70 E-value=17 Score=45.86 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHhhhc
Q psy10461 1081 NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKV 1158 (1359)
Q Consensus 1081 Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe--dVlp~LL~~Lk~ 1158 (1359)
.+.-.||..+.+++..+.+...+ +++.-..-+...+..-+-|..+.||+.|+.+|.++-+.-+.+ .+...|+..++.
T Consensus 102 skdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqn 180 (885)
T COG5218 102 SKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQN 180 (885)
T ss_pred CcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Confidence 56667999999999998874332 222201112333344466889999999999999988765543 334444444443
Q ss_pred ccc-hhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccC
Q psy10461 1159 QER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRD 1236 (1359)
Q Consensus 1159 qe~-~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D 1236 (1359)
+-. -||..+...|.. ...-.|.++.-.+|-..-.|..|. +.+...+|.....-+ ..|. +++-.+.|++
T Consensus 181 DPS~EVRr~allni~v------dnsT~p~IlERarDv~~anRr~vY---~r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe 250 (885)
T COG5218 181 DPSDEVRRLALLNISV------DNSTYPCILERARDVSGANRRMVY---ERCLPRIGDLKSLSIDKRIL-LMEWGLLDRE 250 (885)
T ss_pred CcHHHHHHHHHHHeee------CCCcchhHHHHhhhhhHHHHHHHH---HHHhhhhcchhhccccceeh-hhhhcchhhh
Confidence 322 378774443321 123567888888886643333222 222333443111111 2233 6677788898
Q ss_pred hHHHHHHHHHHHH
Q psy10461 1237 LVHRQTACATIKH 1249 (1359)
Q Consensus 1237 ~~VRqtA~saIk~ 1249 (1359)
..||.++..+|.+
T Consensus 251 ~sv~~a~~d~ia~ 263 (885)
T COG5218 251 FSVKGALVDAIAS 263 (885)
T ss_pred hhHHHHHHHHHHH
Confidence 8888876666655
No 169
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.63 E-value=8.5 Score=46.66 Aligned_cols=197 Identities=12% Similarity=0.207 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCH-----HHHHHHHHHHHHHHHHhhh---hhH----HhHHHHHHH
Q psy10461 964 VMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSA-----KVRQQAADLISRIAVVMKT---CQE----EKLMGHLGV 1031 (1359)
Q Consensus 964 v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~-----~VR~aAAe~Is~LA~vl~~---~~e----~~lL~~Ll~ 1031 (1359)
.++..+...++...+..++|+...+..+-.+|..-+. .+=..|...|+.++....- ... .+++.+++.
T Consensus 115 ~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~ 194 (370)
T PF08506_consen 115 WICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIF 194 (370)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhcc
Confidence 4566667777777777777888777777777654222 2223344555544432210 011 233444433
Q ss_pred HHHH------HhcccCh--------------HHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHH-Hhc------CCCH
Q psy10461 1032 VLYE------YLGEEYP--------------EVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP-ILK------NRHE 1084 (1359)
Q Consensus 1032 iLle------~L~De~p--------------EVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~-LLk------Dr~~ 1084 (1359)
+.+. .|-+++| ..+.+++..+..++...+.. ..+++-..+. ++. +.+|
T Consensus 195 Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~-----v~~i~~~~i~~~l~~y~~~~~~~w 269 (370)
T PF08506_consen 195 PNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ-----VTSILMQYIQQLLQQYASNPSNNW 269 (370)
T ss_dssp HHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH-TTT-H
T ss_pred CccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHhhCCcccH
Confidence 3331 1222222 34557778888887765422 2222222222 332 6789
Q ss_pred HHHHHHHHHHHHHHhhCCC------chhhH-HHHHHHH-HHHHHHH---hhHHHHHHHHHHHHHHHHHHhCch---hHHH
Q psy10461 1085 KVQENCIDLVGRIADRGPE------YVSAR-EWMRICF-ELLELLK---AHKKAIRRATVNTFGYIAKAIGPH---DVLA 1150 (1359)
Q Consensus 1085 rVR~AAielIg~IA~~g~e------~v~~k-E~mrIc~-eLLelLk---D~~~sVR~AAv~tLg~IAk~~Gpe---dVlp 1150 (1359)
+-+.+|+.+++.|+.++.. .++.. ++...+. .++|-|+ +...-+|..|++.+-.....++++ .+++
T Consensus 270 ~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~ 349 (370)
T PF08506_consen 270 RSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFP 349 (370)
T ss_dssp HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9999999999999986532 11110 0111111 1124444 234456777777777777666654 3444
Q ss_pred HHHHhhhcccchhHH
Q psy10461 1151 TLLNNLKVQERQNRV 1165 (1359)
Q Consensus 1151 ~LL~~Lk~qe~~VRv 1165 (1359)
.++..|.+.+.-|+.
T Consensus 350 ~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 350 LLVNHLQSSSYVVHT 364 (370)
T ss_dssp HHHHHTTSS-HHHHH
T ss_pred HHHHHhCCCCcchhh
Confidence 555555554443333
No 170
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=90.63 E-value=23 Score=43.98 Aligned_cols=192 Identities=21% Similarity=0.250 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHH-HHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHH
Q psy10461 1000 AKVRQQAADLISRIAVVMKTCQEEKLMGHLGV-VLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI 1078 (1359)
Q Consensus 1000 ~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~-iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~L 1078 (1359)
-..|..||.+++.++..+.. ..+..++- +|..+|...+.--+....-.+...+.........++...+.+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~----~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE----SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 45788899999999887742 22222332 45555643332211111112333333332221222224556666666
Q ss_pred hcCCC-----------HHHHHHHHHHHHHHHhhCCCc---------------------hhhHHHHHHHHHHHHHHHhhHH
Q psy10461 1079 LKNRH-----------EKVQENCIDLVGRIADRGPEY---------------------VSAREWMRICFELLELLKAHKK 1126 (1359)
Q Consensus 1079 LkDr~-----------~rVR~AAielIg~IA~~g~e~---------------------v~~kE~mrIc~eLLelLkD~~~ 1126 (1359)
|.+.. .++|..|-+++..+.+.|.-. |.-....+++...
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~--------- 247 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGED--------- 247 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHH---------
Confidence 65332 378999999999998876510 1111122233222
Q ss_pred HHHHHHHHHHHHHHHHhCch--------------hHHHHHHHhhh--cccchhHHHHHHHHHHHhhhcCcc---ccHHHH
Q psy10461 1127 AIRRATVNTFGYIAKAIGPH--------------DVLATLLNNLK--VQERQNRVCTTVAIAIVAETCSPF---TVLPAL 1187 (1359)
Q Consensus 1127 sVR~AAv~tLg~IAk~~Gpe--------------dVlp~LL~~Lk--~qe~~VRv~ta~AIg~LAea~gP~---~VLPaL 1187 (1359)
+..+.+.+++. .++.. +..++ ...+.+|+.++.|-+.|+-.+=|. -|+..|
T Consensus 248 ---------~~~l~~~l~~~~k~~a~~~Le~~r~~l~~a-i~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpL 317 (441)
T PF12054_consen 248 ---------FEKLKKSLSPSQKLSALQALEDRRQRLQAA-IEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPL 317 (441)
T ss_pred ---------HHHHHHhcCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHH
Confidence 22222222221 11111 11122 123357888777777777655554 578889
Q ss_pred HHhcCCCC-chhHHHHHHHHHHHHHHhh
Q psy10461 1188 MNEYRVPE-LNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1188 LnlLkDpE-~nVR~~VlkaLs~Iae~IG 1214 (1359)
|+..|-.+ ...|...+.+|+.+.+.|-
T Consensus 318 MdSIK~Een~~LQ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 318 MDSIKREENELLQQRSAESLARLIQLCV 345 (441)
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHh
Confidence 99998644 6689999999988777774
No 171
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=12 Score=47.01 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=80.4
Q ss_pred chHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhCchh
Q psy10461 1070 DLLPRLTPI-LKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAKAIGPHD 1147 (1359)
Q Consensus 1070 ~lLP~L~~L-LkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk-D~~~sVR~AAv~tLg~IAk~~Gped 1147 (1359)
..+.++..+ ..|.+.-||++|+=++|-++-.-. . +....+++|. +++.+||...+-+||..+..-|.+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-----~----~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-----D----LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc-----c----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 566666665 679999999999988887642111 1 2223345664 5799999999999998888666654
Q ss_pred HHHHHHHhh-hcccchhHHHHHHHHHHHhhhcCcc------ccHHHHHHhcCC--CCchhHHHHHH
Q psy10461 1148 VLATLLNNL-KVQERQNRVCTTVAIAIVAETCSPF------TVLPALMNEYRV--PELNVQNGVLK 1204 (1359)
Q Consensus 1148 Vlp~LL~~L-k~qe~~VRv~ta~AIg~LAea~gP~------~VLPaLLnlLkD--pE~nVR~~Vlk 1204 (1359)
.+. +|+.| .....-||-++.+|.+.|.-.|.|+ .+..-|.+...| .+.-+++++|-
T Consensus 622 a~d-iL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~l 686 (926)
T COG5116 622 ATD-ILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVL 686 (926)
T ss_pred HHH-HHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 333 34443 3444568999999999998888765 344444444433 22334444443
No 172
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=89.90 E-value=6.5 Score=45.28 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=85.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccC--chhH-HHHHHHHHHHHhhcccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ--TTED-VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~--~~eD-~v~lkaLg~Lae~Lg~~ik 981 (1359)
+..+...|.++++.+|..|+.++..++....-... .+..+.++....... .++. .+.++.+..+. ......
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~----Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~ 129 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ----IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYH 129 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchh
Confidence 56667788899999999999999876553322211 112222222222221 1122 34444444332 112223
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEVl~siL~AL~aIa~vlG 1060 (1359)
..+...++.+..++...+..+|.++..++.+|+..-.... +-+-.+....|+..+ +++..+++..++.-+..+.+.+.
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~-~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTR-ELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHH-HHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 3344556666778888899999999999999986332111 111112223334334 34467788888888888877765
Q ss_pred CC
Q psy10461 1061 MT 1062 (1359)
Q Consensus 1061 ~~ 1062 (1359)
.+
T Consensus 209 ~~ 210 (254)
T PF04826_consen 209 KE 210 (254)
T ss_pred cc
Confidence 43
No 173
>KOG0392|consensus
Probab=89.71 E-value=5.1 Score=53.97 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-hH--HHHHHHHHHHHhhcccccccchHhHHHHHHHhhc
Q psy10461 920 RKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-ED--VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLN 996 (1359)
Q Consensus 920 R~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD--~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~ 996 (1359)
|+.|--.|+.++..+|.+-... .+.+-+.++-.+++..+ +| -..+..|.+++...+.++.+ +-+.+|.+...+.
T Consensus 750 rrgael~L~~l~~~fg~sl~~k--lp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAK--LPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHh--cchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 8888889999999999872221 11233333333433222 22 23344566777677777777 7788888999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHHhCCCCCCCchhchHHHH
Q psy10461 997 NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLG-SILGALKAIVNVIGMTKMTPPIKDLLPRL 1075 (1359)
Q Consensus 997 Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~-siL~AL~aIa~vlG~~~lsp~l~~lLP~L 1075 (1359)
.....||-+||.+++.++..... +++...+..++-.+++...-+.+ ++...+.-+... ++..+.|+.-=++|-+
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~----e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~-l~~~l~~~~~Llv~pl 901 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATR----ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV-LMVGLVPYNPLLVVPL 901 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh-hcccccccceeehhhh
Confidence 99999999999999999887652 33333444444444432222222 232333333333 3444556555666667
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1076 TPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1076 ~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
...+.|....||.++-+.+..+..
T Consensus 902 lr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 902 LRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred hcccccchHHHHHHHHHHHHHHhc
Confidence 777889999999999999988765
No 174
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=89.44 E-value=3.1 Score=49.75 Aligned_cols=122 Identities=20% Similarity=0.333 Sum_probs=79.9
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch---h-H----HHHHHHHHHHHhhcc
Q psy10461 906 NRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT---E-D----VVMLNGFGTIVNQLG 977 (1359)
Q Consensus 906 ~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~---e-D----~v~lkaLg~Lae~Lg 977 (1359)
.++...+.++++..|..|+..|.. .-|-. .|+..|+.++.+... . + ..+++.+..++.+-.
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~t---D~gl~--------~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRT---DPGLQ--------QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhcc---CCCch--------hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 344445556889999999887654 33333 455555544433211 1 2 455666666766666
Q ss_pred cccccchHhHHHHHHHhh----------cCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc
Q psy10461 978 KRVKPYLPQICGTILWRL----------NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE 1039 (1359)
Q Consensus 978 ~~ikPyl~qILpiIl~LL----------~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D 1039 (1359)
-.+.+|+++|+|.++..+ .+..-.+|.-||.+++.|+...+.. ...+...+...|...|.|
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-YNTLQPRITRTLLKALLD 320 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHcC
Confidence 678899999999999776 3345689999999999999877632 124555666666666644
No 175
>KOG0891|consensus
Probab=89.37 E-value=22 Score=52.02 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=64.4
Q ss_pred HHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHH-HHHHHHHH----Hhhh
Q psy10461 946 QLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAA-DLISRIAV----VMKT 1019 (1359)
Q Consensus 946 ~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAA-e~Is~LA~----vl~~ 1019 (1359)
.++..++|.+++.++.. +.++.+++.+|...|..++.++..+++.+...+.|.+..-|+.|+ ..++++.. ++.+
T Consensus 648 ~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p 727 (2341)
T KOG0891|consen 648 PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDP 727 (2341)
T ss_pred chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecc
Confidence 45677888888887766 788899999999999888888889999999999887777776666 55555543 3333
Q ss_pred hhH-HhHHHHHHHHHHHH
Q psy10461 1020 CQE-EKLMGHLGVVLYEY 1036 (1359)
Q Consensus 1020 ~~e-~~lL~~Ll~iLle~ 1036 (1359)
... +.++..++..+.+.
T Consensus 728 ~~~~P~ll~~l~~~~~te 745 (2341)
T KOG0891|consen 728 YLDYPELLDILINILKTE 745 (2341)
T ss_pred cccChHHHHHHHHHHhHh
Confidence 222 34455555544443
No 176
>KOG4524|consensus
Probab=89.34 E-value=63 Score=43.29 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=65.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhHHHH-------HHHhhhcccchhHHHHHHHHHHHhhhcCcc-------
Q psy10461 1118 LELLKAHKKAIRRATVNTFGYIAKAIGP--HDVLAT-------LLNNLKVQERQNRVCTTVAIAIVAETCSPF------- 1181 (1359)
Q Consensus 1118 LelLkD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~-------LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~------- 1181 (1359)
.-+|.+....||-.|.+.|......+.. +.++|. ++..++.++..+=.++..++..+++.+|.|
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~ 888 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLE 888 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3567888889999999988765544433 344443 455566667666667788888999999987
Q ss_pred ccHHHHHHhcCCCC--------------chhHHHHHHHHHHHHHHhhhh
Q psy10461 1182 TVLPALMNEYRVPE--------------LNVQNGVLKALSFLFEYIGEM 1216 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE--------------~nVR~~VlkaLs~Iae~IG~~ 1216 (1359)
+|+|.+-..++|.- .+++..+++++..+..+++-+
T Consensus 889 dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~ 937 (1014)
T KOG4524|consen 889 DVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELA 937 (1014)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecc
Confidence 78888877766533 334455555555555555443
No 177
>KOG1822|consensus
Probab=89.23 E-value=9 Score=53.67 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=90.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCchhHHH----HHHHhhhc-ccchhHHHHHHHHHHHhhhcCc---c----ccHHH
Q psy10461 1119 ELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA----TLLNNLKV-QERQNRVCTTVAIAIVAETCSP---F----TVLPA 1186 (1359)
Q Consensus 1119 elLkD~~~sVR~AAv~tLg~IAk~~GpedVlp----~LL~~Lk~-qe~~VRv~ta~AIg~LAea~gP---~----~VLPa 1186 (1359)
..|...+...|.++.++++.++...|...++. .+++.+++ ++-..|..-..|+|-|-+..|. + +-+..
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 34667788999999999999999998765444 45666664 4445577777888888777753 2 55668
Q ss_pred HHHhcCCCCc-hhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHH-HhccChH
Q psy10461 1187 LMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA-LMDRDLV 1238 (1359)
Q Consensus 1187 LLnlLkDpE~-nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLeda-L~D~D~~ 1238 (1359)
++.+-+|+.. +||.-.++++..+.+..|++..-|+...+-++..+ +.+.+.+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~ 1016 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSH 1016 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcch
Confidence 8888899886 99999999999999999998877776655555554 5555533
No 178
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.07 E-value=23 Score=42.01 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy10461 943 LEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015 (1359)
Q Consensus 943 L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~ 1015 (1359)
+...+++.|+|++.....|. ..++.+|+.-+..++..+ -..++..+..-++|+.+.||+.-..+++.+..
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 34478999999997655555 566777777776663323 37889999999999999999998888777654
No 179
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.62 E-value=6.8 Score=49.96 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH-----HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC
Q psy10461 988 CGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE-----EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 988 LpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e-----~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
+..+..+|..++-..|-...++++++........+ .+.+..|+-.|.++|.|.+|-++-.+++.+..+...-.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s-- 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS-- 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc--
Confidence 34556788999999999999999999877654321 35777888899999999999999988888888876531
Q ss_pred CCCCchh-chHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1063 KMTPPIK-DLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1063 ~lsp~l~-~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
..+--+ ++..-+...++|++.-||++++.++..+-.
T Consensus 379 -k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 -KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred -cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 111122 344444457899999999999999998744
No 180
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=88.43 E-value=39 Score=39.41 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=73.5
Q ss_pred HHHHHh-hccc-ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-----H---HhHHHHHHHHHHHHhc
Q psy10461 969 FGTIVN-QLGK-RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ-----E---EKLMGHLGVVLYEYLG 1038 (1359)
Q Consensus 969 Lg~Lae-~Lg~-~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~-----e---~~lL~~Ll~iLle~L~ 1038 (1359)
|.-++. .++. .+..|.+-++|.++.++.|.++.+|.+++.++..+..-+.... . .+++..-+..++-+|-
T Consensus 100 l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP 179 (282)
T PF10521_consen 100 LSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLP 179 (282)
T ss_pred HHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCC
Confidence 444444 4444 4678999999999999999999999999999999987554322 1 1222222222222221
Q ss_pred -----ccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHH-Hhc-------CCCHHHHHHHHHHHHHHHhh
Q psy10461 1039 -----EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP-ILK-------NRHEKVQENCIDLVGRIADR 1100 (1359)
Q Consensus 1039 -----De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~-LLk-------Dr~~rVR~AAielIg~IA~~ 1100 (1359)
++....+..+..++-.++.+.....-.+....+-..+.. ++. -.+.+++...++.+..+...
T Consensus 180 ~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 180 PITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 233344455556666665553211111111112122222 221 23577777777777776653
No 181
>KOG2011|consensus
Probab=88.32 E-value=53 Score=44.61 Aligned_cols=156 Identities=10% Similarity=0.137 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH-----hcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHh
Q psy10461 1005 QAADLISRIAVVMKTCQEEKLMGHLGVVLYEY-----LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 1079 (1359)
Q Consensus 1005 aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~-----L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL 1079 (1359)
...+++...++.-+. .+.+...+.-++.. -+|..|+.+..|+..|+--......--+ ...||.-+--.|
T Consensus 262 rle~Ll~~r~etqe~---~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtL 335 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQ---QDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTL 335 (1048)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhccee
Confidence 455555555544432 23445555555554 3888999999999999988776532222 124666666678
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCCCchhhHH--HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH--HHhCchhHHHHHHH
Q psy10461 1080 KNRHEKVQENCIDLVGRIADRGPEYVSARE--WMRICFELLELL-KAHKKAIRRATVNTFGYIA--KAIGPHDVLATLLN 1154 (1359)
Q Consensus 1080 kDr~~rVR~AAielIg~IA~~g~e~v~~kE--~mrIc~eLLelL-kD~~~sVR~AAv~tLg~IA--k~~GpedVlp~LL~ 1154 (1359)
.|++-.||..|+.++..+-.. .++.+..+ ..|.-.-+++|. +|-..+||......+-... ..+...++.+ +..
T Consensus 336 sDk~~~VRl~~lkaL~~L~e~-~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~-Vy~ 413 (1048)
T KOG2011|consen 336 SDKNGTVRLRCLKALIKLYEK-DEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILI-VYS 413 (1048)
T ss_pred ecCccHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHH-HHH
Confidence 999999999999999998775 23333222 223334456776 6667788877777666552 2333345444 344
Q ss_pred hhhcccchhHHHHH
Q psy10461 1155 NLKVQERQNRVCTT 1168 (1359)
Q Consensus 1155 ~Lk~qe~~VRv~ta 1168 (1359)
.+-..++.+++++.
T Consensus 414 Li~d~~r~~~~aa~ 427 (1048)
T KOG2011|consen 414 LIYDSNRRVAVAAG 427 (1048)
T ss_pred HHhccCcchHHHHH
Confidence 44556666777654
No 182
>KOG2759|consensus
Probab=87.99 E-value=62 Score=39.83 Aligned_cols=139 Identities=20% Similarity=0.288 Sum_probs=72.9
Q ss_pred chHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCCCchhhH---HHHHHHHHH--HHH----------HHhhHHHHHHHHH
Q psy10461 1070 DLLPRLTPILKNR-HEKVQENCIDLVGRIADRGPEYVSAR---EWMRICFEL--LEL----------LKAHKKAIRRATV 1133 (1359)
Q Consensus 1070 ~lLP~L~~LLkDr-~~rVR~AAielIg~IA~~g~e~v~~k---E~mrIc~eL--Lel----------LkD~~~sVR~AAv 1133 (1359)
++++.+..|+++. .++|-+-|+..+..+.+.+++.-..+ ..|..|..+ +.. |.+.-..+++--.
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 6778888888754 46888888888888888775322222 123333211 111 1112222333222
Q ss_pred HHHHHHHHH-------------hCc-------------------hhHHHHHHHhhhcccchhHHHH-HHHHHHHhhhc--
Q psy10461 1134 NTFGYIAKA-------------IGP-------------------HDVLATLLNNLKVQERQNRVCT-TVAIAIVAETC-- 1178 (1359)
Q Consensus 1134 ~tLg~IAk~-------------~Gp-------------------edVlp~LL~~Lk~qe~~VRv~t-a~AIg~LAea~-- 1178 (1359)
+....++.+ |.| .+++..|+..|...+-..-+|+ ++=||..-+..
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch
Confidence 332222222 111 1345556666654332222222 24444433322
Q ss_pred C-----ccccHHHHHHhcCCCCchhHHHHHHHHHH
Q psy10461 1179 S-----PFTVLPALMNEYRVPELNVQNGVLKALSF 1208 (1359)
Q Consensus 1179 g-----P~~VLPaLLnlLkDpE~nVR~~VlkaLs~ 1208 (1359)
| .+..=-.+|++++.++++||..++.|+..
T Consensus 401 gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~ 435 (442)
T KOG2759|consen 401 GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQK 435 (442)
T ss_pred HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 1 12455689999999999999999999744
No 183
>KOG4535|consensus
Probab=87.62 E-value=40 Score=41.95 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCc-hh-----HH----HHHHHhhh-cccchhHHHHHHHHHHHhhhcC-cc-------ccH
Q psy10461 1124 HKKAIRRATVNTFGYIAKAIGP-HD-----VL----ATLLNNLK-VQERQNRVCTTVAIAIVAETCS-PF-------TVL 1184 (1359)
Q Consensus 1124 ~~~sVR~AAv~tLg~IAk~~Gp-ed-----Vl----p~LL~~Lk-~qe~~VRv~ta~AIg~LAea~g-P~-------~VL 1184 (1359)
.+++||..|++.||.+.+.+.+ +. +. ..++...- ...-.||..++.++|.+-+.=. |+ .+.
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F 575 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAF 575 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHH
Confidence 4778999999999988887653 11 11 11111100 1122478888888888743321 11 588
Q ss_pred HHHHHhcCCCC-chhHHHHHHHHHHHHHHhh
Q psy10461 1185 PALMNEYRVPE-LNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1185 PaLLnlLkDpE-~nVR~~VlkaLs~Iae~IG 1214 (1359)
|+|..+++|.. -.||.+++.+|.....-.|
T Consensus 576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 576 NALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred HHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 88888888744 5689999988866555443
No 184
>KOG1992|consensus
Probab=87.04 E-value=1.2e+02 Score=40.29 Aligned_cols=198 Identities=18% Similarity=0.225 Sum_probs=121.6
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHH--------hcCccchhhhHHHHHHHHHHHhhccCc-hhHHHHHHHHHHHHh
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMS--------NLGAADIDSRLEEQLIDGILYAFQEQT-TEDVVMLNGFGTIVN 974 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~--------~LGpe~l~~~L~~~Lld~LLplLqd~~-~eD~v~lkaLg~Lae 974 (1359)
.++.++..|+.++..|-.=|+.++.++.. -+|++++.+.+.. ++..+.-.+.-+. .|++.+++++-++..
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~-ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEI-LLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHH-HHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 47888999999999999999999998763 3455555543332 3444444443332 355888899999988
Q ss_pred hcccccccchHhHHH----HHHHhhcCC-CHHHHHHHHHHHHHHHHHhhhhh---HHhHHHHHHHHHHHHhcccChHHHH
Q psy10461 975 QLGKRVKPYLPQICG----TILWRLNNK-SAKVRQQAADLISRIAVVMKTCQ---EEKLMGHLGVVLYEYLGEEYPEVLG 1046 (1359)
Q Consensus 975 ~Lg~~ikPyl~qILp----iIl~LL~De-s~~VR~aAAe~Is~LA~vl~~~~---e~~lL~~Ll~iLle~L~De~pEVl~ 1046 (1359)
.+.+.+.||...++. ++...++|+ +|..-.=.-++++-+........ -..+...|+|++..-|.++-.|-..
T Consensus 578 i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiP 657 (960)
T KOG1992|consen 578 ILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIP 657 (960)
T ss_pred hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877666666555 445556664 44433334455554443332111 1235556777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHH---HHHHHHHHHHHhhCCCchh
Q psy10461 1047 SILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ---ENCIDLVGRIADRGPEYVS 1106 (1359)
Q Consensus 1047 siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR---~AAielIg~IA~~g~e~v~ 1106 (1359)
.++..+..+++.-+.. + ..++.|-+-.+++-.-|+-+ -+.+.++..+-..|..-+.
T Consensus 658 YvfQlla~lve~~~~~-i---p~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~ 716 (960)
T KOG1992|consen 658 YVFQLLAVLVEHSSGT-I---PDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVE 716 (960)
T ss_pred HHHHHHHHHHHhcCCC-C---chhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhc
Confidence 7778888887765431 2 23455555556666666654 3445566666666654444
No 185
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.87 E-value=58 Score=38.35 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=73.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHhCchhH
Q psy10461 1073 PRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA----HKKAIRRATVNTFGYIAKAIGPHDV 1148 (1359)
Q Consensus 1073 P~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD----~~~sVR~AAv~tLg~IAk~~GpedV 1148 (1359)
..++.++...++-++..++.++..++..+....... ...++..++.+|++ ....++..|+..|+.+...
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~------ 180 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS------ 180 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc------
Confidence 334447777899999999999999988665443331 12244555666664 2334555555555555432
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhc-----CCCCchhH--HH---HHHHHHHHHHHhhhhch
Q psy10461 1149 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEY-----RVPELNVQ--NG---VLKALSFLFEYIGEMGK 1218 (1359)
Q Consensus 1149 lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlL-----kDpE~nVR--~~---VlkaLs~Iae~IG~~~k 1218 (1359)
+.+|..... ...++.|++.+ .+...++| -. ++|.|+|-.+.++.+..
T Consensus 181 ------------~~~R~~f~~-----------~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~ 237 (312)
T PF03224_consen 181 ------------KEYRQVFWK-----------SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK 237 (312)
T ss_dssp ------------HHHHHHHHT-----------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred ------------chhHHHHHh-----------cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc
Confidence 112322111 12344455555 33444444 23 44445665555555444
Q ss_pred hhHHhHHHHHHHHHhcc--ChHHHHHHHHHHHHHH
Q psy10461 1219 DYIYAVTPLLEDALMDR--DLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1219 dYL~~VlPlLedaL~D~--D~~VRqtA~saIk~LA 1251 (1359)
.| ++|.|.+++.+. .+++|. +.++++.+.
T Consensus 238 ~~---~i~~L~~i~~~~~KEKvvRv-~la~l~Nl~ 268 (312)
T PF03224_consen 238 KY---LIPLLADILKDSIKEKVVRV-SLAILRNLL 268 (312)
T ss_dssp TS---HHHHHHHHHHH--SHHHHHH-HHHHHHHTT
T ss_pred cc---hHHHHHHHHHhcccchHHHH-HHHHHHHHH
Confidence 43 788887777655 356665 566777664
No 186
>KOG2549|consensus
Probab=86.62 E-value=19 Score=45.30 Aligned_cols=180 Identities=18% Similarity=0.252 Sum_probs=103.5
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-----hH----HHHHHHHHHHHhhc
Q psy10461 906 NRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-----ED----VVMLNGFGTIVNQL 976 (1359)
Q Consensus 906 ~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-----eD----~v~lkaLg~Lae~L 976 (1359)
..++..+-+.++..|..|+.+|.+ .-|=. .|+..|+.++.+... .+ ..+++.+-.|+.+-
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---DsGL~--------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np 278 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---DSGLQ--------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP 278 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---CccHH--------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC
Confidence 344455556899999999998764 22222 566666666655332 22 34455555666666
Q ss_pred ccccccchHhHHHHHHHhhc----------CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh--HH
Q psy10461 977 GKRVKPYLPQICGTILWRLN----------NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP--EV 1044 (1359)
Q Consensus 977 g~~ikPyl~qILpiIl~LL~----------Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p--EV 1044 (1359)
.-++.||+++|+|.|+..+- |..-.+|+-||.++..|+...+..- .++-.+++..|..-+.|... ..
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchh
Confidence 66789999999999987653 2344699999999999988776321 23555666666666655421 11
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHH-----hc-----CCCHHHHHHHHHHHHHH
Q psy10461 1045 LGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI-----LK-----NRHEKVQENCIDLVGRI 1097 (1359)
Q Consensus 1045 l~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~L-----Lk-----Dr~~rVR~AAielIg~I 1097 (1359)
.-.++..|..+....-..-+-|.++++.-.+..- .+ ...++|+.+..++...|
T Consensus 358 ~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~i 420 (576)
T KOG2549|consen 358 HYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPI 420 (576)
T ss_pred hhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHH
Confidence 2222233333322110011223344444444331 11 23456777777777774
No 187
>KOG1517|consensus
Probab=86.13 E-value=43 Score=45.11 Aligned_cols=226 Identities=19% Similarity=0.202 Sum_probs=128.6
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHH-HHHHHHHHHHhhcc---
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDV-VMLNGFGTIVNQLG--- 977 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~-v~lkaLg~Lae~Lg--- 977 (1359)
.+.++..++-|-. ..-|..|+.-|.++.. ||+=.++=.|-.-++...|-+||+...|=+ +++-.-..|+..=+
T Consensus 471 PeQLPiVLQVLLS--QvHRlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLS--QVHRLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred hHhcchHHHHHHH--HHHHHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH
Confidence 3445555544432 3446778888888877 887545544555677888888998776652 33322222222110
Q ss_pred -cccc----cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHH--HHHH
Q psy10461 978 -KRVK----PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLG--SILG 1050 (1359)
Q Consensus 978 -~~ik----Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~--siL~ 1050 (1359)
++++ .|+-+++.. -+.-++.=|.-||-+|+.|..-...-++.-+-.+++.+.++.|.+. ++.+. =++-
T Consensus 548 ~dLvKe~g~~YF~~vL~~----~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~-~~pLLrQW~~i 622 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDP----SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD-PEPLLRQWLCI 622 (1387)
T ss_pred HHHHhccCceeEEEEecC----cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC-ccHHHHHHHHH
Confidence 1111 122222111 1223467788999999999876643333323344666777877653 23222 1444
Q ss_pred HHHHH------HHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHH---------------
Q psy10461 1051 ALKAI------VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE--------------- 1109 (1359)
Q Consensus 1051 AL~aI------a~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE--------------- 1109 (1359)
+|+.+ +...|.+. .---.|+.+++|.-+.||-|++-+||.+...+...+++.-
T Consensus 623 cLG~LW~d~~~Arw~G~r~------~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~ 696 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRD------NAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTS 696 (1387)
T ss_pred HHHHHhhhcchhhhccccc------cHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhh
Confidence 55555 33345542 2334567788999999999999999999886644443320
Q ss_pred HHH-HH---HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10461 1110 WMR-IC---FELLELLKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1110 ~mr-Ic---~eLLelLkD~~~sVR~AAv~tLg~IAk 1141 (1359)
... +. ..++..++|-..=||.+.+-.|..++-
T Consensus 697 ~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 697 IEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 000 11 234555677777788877766665543
No 188
>KOG2274|consensus
Probab=86.03 E-value=43 Score=44.43 Aligned_cols=238 Identities=14% Similarity=0.164 Sum_probs=128.5
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc----ccch
Q psy10461 910 DDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV----KPYL 984 (1359)
Q Consensus 910 ~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i----kPyl 984 (1359)
...+|..+.+|..|++++.-.+ ++..+.+ +-+.++++|+.+....+++. ..++.++..++..=+++. ....
T Consensus 498 ~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~-~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~ 573 (1005)
T KOG2274|consen 498 ALTMDVPPPVKISAVRAFCGYC---KVKVLLS-LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKIC 573 (1005)
T ss_pred hhccCCCCchhHHHHHHHHhcc---Cceeccc-cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchh
Confidence 4567899999999999888766 4553333 44568888888777666665 555666666665544432 1344
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc---cC-hHHHHHHHHHHHHHHHHhC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE---EY-PEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D---e~-pEVl~siL~AL~aIa~vlG 1060 (1359)
+.++.+++...+| |.|-..+-+++-.+..... |.+ .+...++|.|..-|.- .. +.-....+..+..+.+.-.
T Consensus 574 P~~i~lF~k~s~D--P~V~~~~qd~f~el~q~~~-~~g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 574 PLTINLFLKYSED--PQVASLAQDLFEELLQIAA-NYG-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred HHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHH-hhc-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 5555555555555 5888888888888877443 322 3445566666665532 22 2222223344444443321
Q ss_pred CCCCCC-chhchHHHHHHH-h-cCCCHHHHHHHHHHHHHHHhhCCCc---------hhhHHHHHHHHHHHHH-HHhh-HH
Q psy10461 1061 MTKMTP-PIKDLLPRLTPI-L-KNRHEKVQENCIDLVGRIADRGPEY---------VSAREWMRICFELLEL-LKAH-KK 1126 (1359)
Q Consensus 1061 ~~~lsp-~l~~lLP~L~~L-L-kDr~~rVR~AAielIg~IA~~g~e~---------v~~kE~mrIc~eLLel-LkD~-~~ 1126 (1359)
.. ++. -+...+|.+..+ + .|.|. +-+++-+++..+...+.+- ..-..+|++...||+- ..|. -.
T Consensus 650 ~p-L~~~l~~~~FpaVak~tlHsdD~~-tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~ 727 (1005)
T KOG2274|consen 650 SP-LPNLLICYAFPAVAKITLHSDDHE-TLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAA 727 (1005)
T ss_pred CC-ccHHHHHHHhHHhHhheeecCChH-HHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHH
Confidence 11 111 122355666664 2 34444 3355556666665543221 1112245555544422 2222 22
Q ss_pred HHHHHHHHHHHHHHHHhCch--hHHHHHHHhhh
Q psy10461 1127 AIRRATVNTFGYIAKAIGPH--DVLATLLNNLK 1157 (1359)
Q Consensus 1127 sVR~AAv~tLg~IAk~~Gpe--dVlp~LL~~Lk 1157 (1359)
-|-+.....+...++-+|+. .++..++..|.
T Consensus 728 ~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 728 FVGPLVLTLITHASSELGPNLDQILRAVISRLQ 760 (1005)
T ss_pred HHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 35556666666666666763 46666655543
No 189
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=85.89 E-value=5.1 Score=47.36 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhhhh--chh---hHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCC--chhHHhhhHHhh
Q psy10461 1198 VQNGVLKALSFLFEYIGEM--GKD---YIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG--CEDALTHLLNYV 1270 (1359)
Q Consensus 1198 VR~~VlkaLs~Iae~IG~~--~kd---YL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG--~EdaliHlLnlv 1270 (1359)
|+..++.....||+.+|+. .++ |..-+.|++.. ....||-.....++..=+ .+| ..-++..++--+
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~----asi~Vkp~lL~i~e~~~l---pL~~~L~p~l~~li~sl 143 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSY----ASIQVKPQLLDIYEKYYL---PLGPALRPCLKGLILSL 143 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHhc---CccHHHHHHHHHHHHHh
Confidence 8999999999999999973 222 33455565444 446777655566655321 233 334556677788
Q ss_pred hcccccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhcc
Q psy10461 1271 WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH 1311 (1359)
Q Consensus 1271 lPnI~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfh 1311 (1359)
+|.+.|+..++..+++..++.++.++|..+|.+.+|-.+..
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~ 184 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT 184 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc
Confidence 99999888889999999999999999999999999988873
No 190
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=85.86 E-value=2e+02 Score=41.84 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhcccccccchHhHHHHH----HHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH-------HhHHHHHHHH
Q psy10461 964 VMLNGFGTIVNQLGKRVKPYLPQICGTI----LWRLNNKSAKVRQQAADLISRIAVVMKTCQE-------EKLMGHLGVV 1032 (1359)
Q Consensus 964 v~lkaLg~Lae~Lg~~ikPyl~qILpiI----l~LL~Des~~VR~aAAe~Is~LA~vl~~~~e-------~~lL~~Ll~i 1032 (1359)
+.+..+..++..=-.+++-.-..|+.++ .....+.+..|+.-|.++|..++--.-...+ ..+|..+..+
T Consensus 1111 FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~i 1190 (1780)
T PLN03076 1111 FSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIV 1190 (1780)
T ss_pred hHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHH
Confidence 4444455444433345543334544443 4444456788999999999998864432211 2344433333
Q ss_pred HHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1033 LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1033 Lle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
+. .....++...++.++..+...-+.. +..--+.++--+...+.++++.+.+.+.+.+..|..
T Consensus 1191 m~---~s~~~eVrE~ILeCv~qmI~s~~~n-IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1191 MR---KSNAVEIRELIIRCVSQMVLSRVNN-VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HH---hcCchHHHHHHHHHHHHHHHHHHhh-hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 32 2235677777888888887765432 333234455555555678888888888888887765
No 191
>KOG1822|consensus
Probab=85.54 E-value=2e+02 Score=41.50 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=83.0
Q ss_pred HHHHHHHhhccc-ccccc--hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChH
Q psy10461 967 NGFGTIVNQLGK-RVKPY--LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE 1043 (1359)
Q Consensus 967 kaLg~Lae~Lg~-~ikPy--l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pE 1043 (1359)
.+++.+++..+. -+.|+ -.--+-.+...+...++..|=.+++.+++++.+.+. ..++..+...++..|++-.+.
T Consensus 854 s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~ 930 (2067)
T KOG1822|consen 854 SALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDP 930 (2067)
T ss_pred HHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCc
Confidence 344555555553 23322 122233455677789999999999999999999873 345566677777777665444
Q ss_pred HHH-HHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhCC
Q psy10461 1044 VLG-SILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE-KVQENCIDLVGRIADRGP 1102 (1359)
Q Consensus 1044 Vl~-siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~-rVR~AAielIg~IA~~g~ 1102 (1359)
+.+ +-.-+++.+-.-+|.-.-.+....-+..+..+.+|.+. .||.-++-++..+++.+.
T Consensus 931 i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~ 991 (2067)
T KOG1822|consen 931 ITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSG 991 (2067)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCC
Confidence 443 33345555555544321222233334445556778876 899999999999888654
No 192
>KOG1525|consensus
Probab=84.90 E-value=1.9e+02 Score=40.65 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=90.7
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIAD-RGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
+..++|.|..-|...+..+|..|..++|.+-. .+.... ....+++..++.-+.|....||-++++....+--. .|.
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~ 333 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPS 333 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-Cch
Confidence 44677788777778889999999999999754 333222 22344666667778899999999999988765444 332
Q ss_pred hHHHHH--HHhhh--cccchhHHHHHHHH-----HHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy10461 1147 DVLATL--LNNLK--VQERQNRVCTTVAI-----AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 1212 (1359)
Q Consensus 1147 dVlp~L--L~~Lk--~qe~~VRv~ta~AI-----g~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~ 1212 (1359)
+...+ .-.++ .-|..+|+.+-+.+ ....-++-+. +|..+...++|...+||.-+...|..+.+.
T Consensus 334 -~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 334 -IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred -hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11111 11122 23444555433222 2223333344 666777778999999999999999988884
No 193
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=84.87 E-value=96 Score=38.66 Aligned_cols=74 Identities=9% Similarity=0.097 Sum_probs=45.5
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLG 977 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg 977 (1359)
+....++..|..+++-+-.+|...++.++. .|+..........+++.+...++...+.+ .+++.++..++..-.
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~-~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~ 176 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLAC-FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE 176 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHh-cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch
Confidence 455667778888999999999999999976 44443332222234445555555332222 556667777665443
No 194
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.78 E-value=77 Score=36.00 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=96.8
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch--hH
Q psy10461 1072 LPRLTP-ILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DV 1148 (1359)
Q Consensus 1072 LP~L~~-LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe--dV 1148 (1359)
||-+.. +.+..++++....++.++.++.... .. ...+|..+..+.+......+--+...+-.+-+. ++- ..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f~~ 75 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VC----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHFPF 75 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cc----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHHHH
Confidence 344444 5567888888888888888887442 11 112343334444444444444444444444332 111 12
Q ss_pred HHHHHHh--hh------cccc--hhHHHHHHHHHHHhhhcCc--cccHHHHHHhc-CCCCchhHHHHHHHHHHHHHHhhh
Q psy10461 1149 LATLLNN--LK------VQER--QNRVCTTVAIAIVAETCSP--FTVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGE 1215 (1359)
Q Consensus 1149 lp~LL~~--Lk------~qe~--~VRv~ta~AIg~LAea~gP--~~VLPaLLnlL-kDpE~nVR~~VlkaLs~Iae~IG~ 1215 (1359)
+..++.. ++ ..+. ...++.+.++-.++..... .++++.+...| ++....++...+.+|..+++ .
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~---~ 152 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE---A 152 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH---H
Confidence 2222222 11 1111 2333334444444433311 16899999999 66666677777777777663 3
Q ss_pred hchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCC-CchhHHhhhHHhhhcccccCC
Q psy10461 1216 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNYVWPNIFETS 1278 (1359)
Q Consensus 1216 ~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~gl-G~EdaliHlLnlvlPnI~Ets 1278 (1359)
...++...-.-+..++-.|....+-+..|+.+.-++.+.... .++....+.+..+|.......
T Consensus 153 ~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 153 EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 333333222112223323334444443444444332111111 244556678888998765544
No 195
>KOG1517|consensus
Probab=84.58 E-value=13 Score=49.58 Aligned_cols=207 Identities=18% Similarity=0.144 Sum_probs=115.6
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc--cCh-HHHHHHHHHHHHHHHHhCC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE--EYP-EVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D--e~p-EVl~siL~AL~aIa~vlG~ 1061 (1359)
--|.|+++.||+......|.-.+-++++|-.+=+.|+.+-+=.+--..+++.|.+ ..+ |-+.-+.-.|..++..+-.
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 3588999999999999999999999999977767776531101000011111211 222 4333333334444443211
Q ss_pred CCCCCchhchHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCCCchhhHHHHH----HHHHHHHHHHhhHHHHHHHHHHHH
Q psy10461 1062 TKMTPPIKDLLPRLTPILKN-RHEKVQENCIDLVGRIADRGPEYVSAREWMR----ICFELLELLKAHKKAIRRATVNTF 1136 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkD-r~~rVR~AAielIg~IA~~g~e~v~~kE~mr----Ic~eLLelLkD~~~sVR~AAv~tL 1136 (1359)
.+-.=-..+++-.-+..+.| .+|-.|+=++=+||.|=+. |-..+ |+- .-..|+.+|+|...+||.||+-+|
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d---~~~Ar-w~G~r~~AhekL~~~LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED---YDEAR-WSGRRDNAHEKLILLLSDPVPEVRAAAVFAL 666 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh---cchhh-hccccccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 11011123566666667777 4788888888888887431 11111 211 112456789999999999999999
Q ss_pred HHHHHHh----Cch-hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHH
Q psy10461 1137 GYIAKAI----GPH-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209 (1359)
Q Consensus 1137 g~IAk~~----Gpe-dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~I 1209 (1359)
|.+.... ..+ .+...++.. ++.+.++- .+.. ..+-.++..++|-.+-||..|.-+|+.+
T Consensus 667 gtfl~~~~d~fde~~~~~~~~~~l---~~~~~~~E------~~i~-----~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 667 GTFLSNGSDNFDEQTLVVEEEIDL---DDERTSIE------DLII-----KGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HHHhcccccccchhhhhhhhhhcc---hhhhhhHH------HHHH-----hhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9887752 221 112222210 00000110 0000 0113567778899999998888887543
No 196
>KOG4500|consensus
Probab=84.33 E-value=1.2e+02 Score=37.75 Aligned_cols=29 Identities=0% Similarity=0.062 Sum_probs=18.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMS 932 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~ 932 (1359)
.+..|.+...+++-.|-....+.+..++.
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCy 116 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICY 116 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhc
Confidence 35555666666666666666677766664
No 197
>KOG0414|consensus
Probab=83.77 E-value=35 Score=46.43 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=66.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHh-CchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCC
Q psy10461 1116 ELLELLKAHKKAIRRATVNTFGYIAKAI-GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP 1194 (1359)
Q Consensus 1116 eLLelLkD~~~sVR~AAv~tLg~IAk~~-GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDp 1194 (1359)
.++++|..+...+|.+.+.+++.+.... ..++.-. ..+.+|- .++-.|+..+.|-
T Consensus 316 ~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~--------~sk~~r~----------------~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 316 LLVDLLDSESYTLRNAVLEICANLVASELRDEELEE--------MSKSLRD----------------ELLELLRERLLDV 371 (1251)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhH--------HHHHHHH----------------HHHHHHHHHhhcc
Confidence 4456677778888888888777654321 1100000 0011111 2566677777888
Q ss_pred CchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1195 ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1195 E~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
.+.||..|+.-+..+|+.-.. .......|+-++..-+.|.+..||..|...+..+
T Consensus 372 sa~vRskVLqv~~~l~~~~s~-p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 372 SAYVRSKVLQVFRRLFQQHSI-PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred cHHHHHHHHHHHHHHHHccCC-CccHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 888888888877776654321 1123356777777777788888888777666654
No 198
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.56 E-value=7.2 Score=38.25 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=35.5
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 1235 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~ 1235 (1359)
.++..++..|+|+++.|-.+++++|..++...+. .|+|.|.+...|.
T Consensus 43 ~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 43 KILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------EVLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------HHHHHHHHHHhCc
Confidence 5777888888888888888888888888877663 6777666554443
No 199
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.90 E-value=9.5 Score=40.94 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=53.4
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHhhhcCcc-------ccHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHhhh-------
Q psy10461 1151 TLLNNLKVQERQNRVCTTVAIAIVAETCSPF-------TVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGE------- 1215 (1359)
Q Consensus 1151 ~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~-------~VLPaLLnlLkDpE~-nVR~~VlkaLs~Iae~IG~------- 1215 (1359)
.+.+.+++.+.+-|.+...-+..+.+.|+++ ..+..+++.|+.+++ .+...++.+|..++.+++.
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 3444555555555666666666666666543 457788888887664 4788999999999998875
Q ss_pred hchhhHHhHHHHHHHHHhc
Q psy10461 1216 MGKDYIYAVTPLLEDALMD 1234 (1359)
Q Consensus 1216 ~~kdYL~~VlPlLedaL~D 1234 (1359)
.....+..+++.+..++.+
T Consensus 109 i~tp~l~~~i~~ll~l~~~ 127 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQD 127 (165)
T ss_pred HhhccHHHHHHHHHHHHhc
Confidence 1233444555555555543
No 200
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=82.22 E-value=7.4 Score=46.65 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCCCCCchhchHHHHHHHh----------cCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHH
Q psy10461 1048 ILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL----------KNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFEL 1117 (1359)
Q Consensus 1048 iL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL----------kDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eL 1117 (1359)
.+....++...-.. .+.+++-+++|.++..+ .+.||.+|.-++.++..|+......-+.. ..|+...+
T Consensus 237 lm~~v~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l-~~ri~~tl 314 (343)
T cd08050 237 LMRMVRALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL-QPRITRTL 314 (343)
T ss_pred HHHHHHHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHH
Confidence 33444444333222 25677778888887732 26899999999999999998644322222 23455555
Q ss_pred HHHHHhh
Q psy10461 1118 LELLKAH 1124 (1359)
Q Consensus 1118 LelLkD~ 1124 (1359)
+..|-|.
T Consensus 315 ~k~l~d~ 321 (343)
T cd08050 315 LKALLDP 321 (343)
T ss_pred HHHHcCC
Confidence 6666655
No 201
>KOG1222|consensus
Probab=82.16 E-value=72 Score=39.85 Aligned_cols=293 Identities=16% Similarity=0.223 Sum_probs=142.7
Q ss_pred ChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHH-HHHHHhhccCchhH---HHHHHHHHHHHhh
Q psy10461 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLI-DGILYAFQEQTTED---VVMLNGFGTIVNQ 975 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Ll-d~LLplLqd~~~eD---~v~lkaLg~Lae~ 975 (1359)
+...++.+|+..+--..+.+|...+..+-.+.=.- .+++.++ -+++|.+...-..| .+++..+..+ .
T Consensus 342 ~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-------glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~--S 412 (791)
T KOG1222|consen 342 EQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-------GLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHL--S 412 (791)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-------cccHHHhhccchHHHHHHhCCcccchhhhhhhhhh--c
Confidence 44556889999999999999999888665543211 1222333 34555543222222 2233222111 2
Q ss_pred cccccc---cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh----hhHHhHHHHHHHHHHHH-hcccChHHHHH
Q psy10461 976 LGKRVK---PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKT----CQEEKLMGHLGVVLYEY-LGEEYPEVLGS 1047 (1359)
Q Consensus 976 Lg~~ik---Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~----~~e~~lL~~Ll~iLle~-L~De~pEVl~s 1047 (1359)
+++.++ .|...|--....++...+..|-.+...++-+||-.-.. |.. + =+-.|++. ++ +.|-+
T Consensus 413 ~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceG-q----gL~~LM~ra~k--~~D~l-- 483 (791)
T KOG1222|consen 413 CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEG-Q----GLDLLMERAIK--SRDLL-- 483 (791)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecC-c----chHHHHHHHhc--ccchH--
Confidence 333332 45555555555556666666666666666666532211 111 1 11122222 21 22211
Q ss_pred HHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHH--HHHHHHHhh-
Q psy10461 1048 ILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF--ELLELLKAH- 1124 (1359)
Q Consensus 1048 iL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~--eLLelLkD~- 1124 (1359)
.+..+..+.+.-|.. +.-+-+|+-.+..++++....- -.++++|.+|.....+.+ |..+.. .|+||+++.
T Consensus 484 LmK~vRniSqHeg~t--qn~FidyvgdLa~i~~nd~~E~--F~~EClGtlanL~v~dld---w~~ilq~~~LvPw~k~~L 556 (791)
T KOG1222|consen 484 LMKVVRNISQHEGAT--QNMFIDYVGDLAGIAKNDNSES--FGLECLGTLANLKVTDLD---WAKILQSENLVPWMKTQL 556 (791)
T ss_pred HHHHHHHhhhccchH--HHHHHHHHHHHHHHhhcCchHH--HHHHHHHHHhhcccCCCC---HHHHHhhccccHHHHHhh
Confidence 223333333333311 1113467777777777544432 456777777775543333 555554 356777654
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHh------hhcCccccHHHHHHhcCC----C
Q psy10461 1125 KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA------ETCSPFTVLPALMNEYRV----P 1194 (1359)
Q Consensus 1125 ~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LA------ea~gP~~VLPaLLnlLkD----p 1194 (1359)
+...++ ++ +-+-+.+++|.+| .-+.|..++++|+.+|+. .
T Consensus 557 ~pga~e---------------dd---------------LvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDD 606 (791)
T KOG1222|consen 557 QPGADE---------------DD---------------LVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDD 606 (791)
T ss_pred cCCccc---------------hh---------------hhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccc
Confidence 111111 11 1111222233322 223566899999999873 3
Q ss_pred CchhHHHHHHHHHHHHHHhhhhchhhH---HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1195 ELNVQNGVLKALSFLFEYIGEMGKDYI---YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1195 E~nVR~~VlkaLs~Iae~IG~~~kdYL---~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
|--||. +--+-.+... +...+|+ .+.-..|.|+.-|.+..+|...-.++..||
T Consensus 607 EfV~Qi--iyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIia 662 (791)
T KOG1222|consen 607 EFVVQI--IYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIA 662 (791)
T ss_pred hHHHHH--HHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332331 1111111111 2234444 233447788888999999987666666665
No 202
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.39 E-value=71 Score=40.39 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=114.3
Q ss_pred ChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhc--cCchh-----H--HHHHHHHH
Q psy10461 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ--EQTTE-----D--VVMLNGFG 970 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLq--d~~~e-----D--~v~lkaLg 970 (1359)
..++++..++-.--|.+..|-..|-..|.++...+... .+++.|..++. ....+ . ..=.+.++
T Consensus 234 ~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~--------~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~ 305 (501)
T PF13001_consen 234 PDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDP--------DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILS 305 (501)
T ss_pred CcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCH--------HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHH
Confidence 34456666666667888888888888888876654444 34444444443 11111 1 23345566
Q ss_pred HHHhhcccccccchHhHHHHHHHhhcCC--CHHHHHHHHHHH---HHHHHHhhhhhHHhHHHHHHHHHHHHhcc------
Q psy10461 971 TIVNQLGKRVKPYLPQICGTILWRLNNK--SAKVRQQAADLI---SRIAVVMKTCQEEKLMGHLGVVLYEYLGE------ 1039 (1359)
Q Consensus 971 ~Lae~Lg~~ikPyl~qILpiIl~LL~De--s~~VR~aAAe~I---s~LA~vl~~~~e~~lL~~Ll~iLle~L~D------ 1039 (1359)
-++..... ....++++.++..-+... +..+|..+.+.+ ......+. ...+..+.+.++..+..
T Consensus 306 ~L~kS~~A--a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~----~~~l~~l~~~i~~~g~p~~~~~~ 379 (501)
T PF13001_consen 306 LLSKSVIA--ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS----PQILKLLRPVILSQGWPLIQDSS 379 (501)
T ss_pred HHHHhHHH--HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcC----HHHHHHHHHHHHhcCcccccccc
Confidence 66654321 123466666777777766 778888888998 55554444 45666677777765411
Q ss_pred ------cChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q psy10461 1040 ------EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1100 (1359)
Q Consensus 1040 ------e~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~ 1100 (1359)
...+.++....+++.++.....- +.. --+++..++.-|.+....||.++-++++.++..
T Consensus 380 ~~~~~~~~~~lR~~aYe~lG~L~~~~p~l-~~~-d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 380 SQSNSSEDIELRSLAYETLGLLAKRAPSL-FSK-DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHccCccc-ccc-cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 12344555667777777764221 111 235777777777888899999999999998774
No 203
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=78.70 E-value=66 Score=38.32 Aligned_cols=142 Identities=19% Similarity=0.245 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHhcCc-cchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccccchHhHHHHH---
Q psy10461 918 QYRKMVMESIEKTMSNLGA-ADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKPYLPQICGTI--- 991 (1359)
Q Consensus 918 ~VR~~Aa~~L~~Ia~~LGp-e~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikPyl~qILpiI--- 991 (1359)
.+|+.-++-+.+.+..... +.+...+.+++++.++.-+++..++. ..++..+..++..++..+.+++..|+..+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4567777777777775552 33455677788888887777654433 67788999999999998888887777654
Q ss_pred -HHhhcC---CCHHHHHHHHHHHHHHHHHhhhh---hHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 992 -LWRLNN---KSAKVRQQAADLISRIAVVMKTC---QEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 992 -l~LL~D---es~~VR~aAAe~Is~LA~vl~~~---~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
+.+.++ +-|..|..--.++..+...--.. ...+.+..++..+...++...+++...++.++..+.+.+
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 344443 46899998888888887642110 113444555566666677778888888888887777665
No 204
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=78.38 E-value=21 Score=41.63 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=76.5
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhc----------hhhHHhHHHHHHHH--Hh--ccChHHHHHHHHHH
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG----------KDYIYAVTPLLEDA--LM--DRDLVHRQTACATI 1247 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~----------kdYL~~VlPlLeda--L~--D~D~~VRqtA~saI 1247 (1359)
-++|.+|+++.|.++.+|..-|++|..+.+.+.... .-|.+++.|+|--+ +. ++...+=+.+-.++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 489999999999999999999999998888775422 11224555544311 11 22222224445555
Q ss_pred HHHHhhhcCCC---chhHHhhhHHh-hhcccc-cC---ChHHHHHHHHHHHHHHHhhchHH--HHHhHhhhhcc
Q psy10461 1248 KHMALGVYGFG---CEDALTHLLNY-VWPNIF-ET---SPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLFH 1311 (1359)
Q Consensus 1248 k~LAl~~~glG---~EdaliHlLnl-vlPnI~-Et---sp~Vi~~ileaLeaLr~aLG~~~--ll~~vLpgLfh 1311 (1359)
-.++.....-+ ....+...+.. ++.++. +. .+.++...++.+..+...+|... -++.++|.+++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 55533221111 11222222222 333222 23 37788889999999999999855 46777776653
No 205
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.30 E-value=38 Score=37.12 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=82.7
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchh
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD 1147 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gped 1147 (1359)
++.+++.|..++.+.+..||..|++.+..+...|- +++.+ ....++-+..|.+..||..|...+..+.+..+. -
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL--vnP~~---cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s-~ 79 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL--VNPKQ---CVPTLIALETSPNPSIRSRAYQLLKELHEKHES-L 79 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC--CChHH---HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH-H
Confidence 55799999999999999999999999999998774 34442 223445567888999999999999999887542 1
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-----ccccHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q psy10461 1148 VLATLLNNLKVQERQNRVCTTVAIAIVAETCS-----PFTVLPALMNEYRVPELNVQNGVLKALSFLFE 1211 (1359)
Q Consensus 1148 Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-----P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae 1211 (1359)
+...+.+ -+|.+-...-..-.+..+ ...++..+..+++ +.+..|...+++|...++
T Consensus 80 v~~~~~~-------gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~ 140 (187)
T PF12830_consen 80 VESRYSE-------GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFD 140 (187)
T ss_pred HHHHHHH-------HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHH
Confidence 1111111 122221111111112221 3356777777777 455667766666654444
No 206
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=78.21 E-value=66 Score=41.28 Aligned_cols=98 Identities=17% Similarity=0.296 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHHhCCCCCCCchhchHHHHHH-
Q psy10461 1000 AKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLG-SILGALKAIVNVIGMTKMTPPIKDLLPRLTP- 1077 (1359)
Q Consensus 1000 ~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~-siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~- 1077 (1359)
+.+.+....++.-++..++.+ .++.+.+++..+-..+....|+.++ +++.-++.++........ ....+|.+..
T Consensus 452 ~~l~~~~~~lL~l~~~~~~~l-~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~---q~~~~~~Ls~L 527 (559)
T PF14868_consen 452 PYLQQTLSLLLSLLSFFIQLL-DPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESD---QNPVSPALSEL 527 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccc---cchhhhHHHHH
Confidence 444555555555555544322 3466666666666666666666544 344444444443322211 2257777766
Q ss_pred ---HhcCCCHHHHHHHHHHHHHHHhhC
Q psy10461 1078 ---ILKNRHEKVQENCIDLVGRIADRG 1101 (1359)
Q Consensus 1078 ---LLkDr~~rVR~AAielIg~IA~~g 1101 (1359)
+|+|+||-|+.-|+++++.+|+..
T Consensus 528 f~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 528 FHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 579999999999999999999853
No 207
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=77.32 E-value=25 Score=35.64 Aligned_cols=142 Identities=13% Similarity=0.188 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccchHhHHHHHHHhhcC
Q psy10461 918 QYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNN 997 (1359)
Q Consensus 918 ~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~D 997 (1359)
-||...+..+..++...-|+.|++ .++.++..++........++..|..+.+.+.+..+ .+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~-----~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~--------------~~ 63 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPD-----FLEDLLQLLQSSPQHLELVLRILRILPEEITDFRR--------------SS 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTT-----HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHC--------------CH
T ss_pred hHHHHHHHHHHHHHHHHChhhCch-----HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhc--------------hh
Confidence 578888899999998888888875 67777777776422225677777777776654111 11
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc---ccC-hHHHHHHHHHHHHHHHHhCCCCCCCchhchHH
Q psy10461 998 KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG---EEY-PEVLGSILGALKAIVNVIGMTKMTPPIKDLLP 1073 (1359)
Q Consensus 998 es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~---De~-pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP 1073 (1359)
.+...|...-+.+..-. ..++..+.+.|. +.. .+....++.++......++...+. ..++++
T Consensus 64 ~~~~r~~~l~~~l~~~~------------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~--~~~~l~ 129 (148)
T PF08389_consen 64 LSQERRRELKDALRSNS------------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELII--NSNLLN 129 (148)
T ss_dssp SHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH--SSSHHH
T ss_pred hhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc--cHHHHH
Confidence 12223333333333221 112233333332 112 566777778888876655433221 125888
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q psy10461 1074 RLTPILKNRHEKVQENCIDLV 1094 (1359)
Q Consensus 1074 ~L~~LLkDr~~rVR~AAielI 1094 (1359)
.++.++.+. ..+.+|+++|
T Consensus 130 ~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 130 LIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHcCCH--HHHHHHHHhC
Confidence 888888543 3477777764
No 208
>KOG1789|consensus
Probab=76.21 E-value=3.1e+02 Score=37.71 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=61.2
Q ss_pred ccccccChHhH----HHHHhhhcC-CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHH
Q psy10461 894 KPARLVGASEI----INRVVDDLK-DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNG 968 (1359)
Q Consensus 894 ~LA~klg~~ei----I~~Ll~~LK-Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lka 968 (1359)
.||..+|.++. ...++..|. .....+...|++.+..+-.+- +.+..-...-.+..+|.+|.++-+-..-++..
T Consensus 1758 dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~--~Cv~~~a~~~vL~~LL~lLHS~PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1758 DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK--ECVTDLATCNVLTTLLTLLHSQPSMRARVLDV 1835 (2235)
T ss_pred chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc--HHHHHHHhhhHHHHHHHHHhcChHHHHHHHHH
Confidence 67777777654 334444444 456677888888776554321 11111111123444555555544333334433
Q ss_pred HHHHHhhcccccccch--HhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy10461 969 FGTIVNQLGKRVKPYL--PQICGTILWRLNNKSAKVRQQAADLISRIA 1014 (1359)
Q Consensus 969 Lg~Lae~Lg~~ikPyl--~qILpiIl~LL~Des~~VR~aAAe~Is~LA 1014 (1359)
+..+.... +..+.-+ ..++-++.-++...++.+|.+||++++++.
T Consensus 1836 LYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1836 LYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 33333221 1111000 112233334667789999999999999985
No 209
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=76.09 E-value=18 Score=36.32 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Q psy10461 963 VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYE 1035 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle 1035 (1359)
..++++++.+++..+..+..+.+||+.++...+..+ .+|..|.+++..+...++...-..+++..+..++.
T Consensus 33 ~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 33 KRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 678899999999778888899999999999888765 89999999999999998753333444444444443
No 210
>KOG2081|consensus
Probab=75.78 E-value=55 Score=41.47 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCc-h-h-HHHHHHHHHHHHhhcccccccchHhHHHHHHH
Q psy10461 917 EQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT-T-E-DVVMLNGFGTIVNQLGKRVKPYLPQICGTILW 993 (1359)
Q Consensus 917 ~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~-~-e-D~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~ 993 (1359)
-.+|..+.+.+.+++.-+|.. ..+..+...+++.. + + .++++..+..++......-.+.+++++..|.+
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~--------e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~n 437 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSD--------ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICN 437 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcH--------HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhC
Confidence 378999999999999999988 45555555566522 2 2 27778777777776664444444455544443
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 994 RLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 994 LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
+ ++...+|..+...++.+.+.+... ++.+..+...++..+.+.. -.+.+-.++..++...
T Consensus 438 l--p~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 438 L--PEQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred C--ccchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 2 355669999999999999999742 3444444444444442211 2333444555555554
No 211
>KOG1293|consensus
Probab=75.68 E-value=2.6e+02 Score=36.45 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhhhc-----Cc--cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhc
Q psy10461 1163 NRVCTTVAIAIVAETC-----SP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMD 1234 (1359)
Q Consensus 1163 VRv~ta~AIg~LAea~-----gP--~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D 1234 (1359)
++.++..++-.++..+ |+ .++.-.++.++.||+.-|+..++.+|.-+.--+|+.-..++ +-.+-.|...+.+
T Consensus 393 ~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~ 472 (678)
T KOG1293|consen 393 FVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD 472 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC
Confidence 4555555555554333 33 37888899999999999999999999776666666444455 4566677778889
Q ss_pred cChHHHHHHHHHHHHHHhhhcC
Q psy10461 1235 RDLVHRQTACATIKHMALGVYG 1256 (1359)
Q Consensus 1235 ~D~~VRqtA~saIk~LAl~~~g 1256 (1359)
.|..+|+.+..++.|+.|++..
T Consensus 473 ~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 473 PDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred CCchHHHHHHHHHHHHHhcchH
Confidence 9999999999999999876553
No 212
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.59 E-value=14 Score=39.12 Aligned_cols=73 Identities=21% Similarity=0.149 Sum_probs=57.9
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc-cChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-RDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D-~D~~VRqtA~saIk~LA 1251 (1359)
||.+.+.+|..-++.+.++|+..++.-|..+.+.||..+...+ ..++..|.+++.+ .+..|++-....|...+
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999999999999998554434 3566667777777 56778877777777665
No 213
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=75.28 E-value=2.9e+02 Score=36.72 Aligned_cols=320 Identities=14% Similarity=0.076 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCc-cchhhhHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhhcccccccchHhHHHHHHH
Q psy10461 916 NEQYRKMVMESIEKTMSNLGA-ADIDSRLEEQLIDGILYAFQEQTTE-DVVMLNGFGTIVNQLGKRVKPYLPQICGTILW 993 (1359)
Q Consensus 916 s~~VR~~Aa~~L~~Ia~~LGp-e~l~~~L~~~Lld~LLplLqd~~~e-D~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~ 993 (1359)
+.+--.-|++.+..|..-+.. .....-++.-++.+++|+|+++..= ..-+|..+..+-+-..+ ...+.++.....+
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd--~~ill~aye~t~n 506 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD--NGILLEAYENTHN 506 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc--chHHHHHHHHHHH
Confidence 444555666666665551111 1122234446778888999886431 13444445555333332 3456777788888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh----cccChHHHHHHHHHHHHHHHHhCCCCCCCchh
Q psy10461 994 RLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL----GEEYPEVLGSILGALKAIVNVIGMTKMTPPIK 1069 (1359)
Q Consensus 994 LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L----~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~ 1069 (1359)
.++|.+--|+.+||..+..+-.... ....+...+|..++.| .+-.-|+++.++ ..+++.+. +.++|...
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~q---~h~k~sahVp~tmekLLsLSn~feiD~LS~vM---e~fVe~fs-eELspfa~ 579 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNEQ---SHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM---ESFVEYFS-EELSPFAP 579 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhchh---hhHHHHhhhhHHHHHHHHhcccccchHHHHHH---HHHHHHhH-HhhchhHH
Confidence 8999999999999998887753322 2344555666666654 344457777664 44445443 34677666
Q ss_pred chHHHHHH----Hh----cCC---CH---HHHHHHHHHHHHHHhh--CCCchhhHHHHH-HHHHHHHH----HHhhHHHH
Q psy10461 1070 DLLPRLTP----IL----KNR---HE---KVQENCIDLVGRIADR--GPEYVSAREWMR-ICFELLEL----LKAHKKAI 1128 (1359)
Q Consensus 1070 ~lLP~L~~----LL----kDr---~~---rVR~AAielIg~IA~~--g~e~v~~kE~mr-Ic~eLLel----LkD~~~sV 1128 (1359)
++..++.. +. .+. .. .-+-+|+.++..+... +-+..+. +.+ +...+.|+ |++....+
T Consensus 580 eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~--vLk~le~slypvi~Filkn~i~df 657 (970)
T COG5656 580 ELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPL--VLKYLEVSLYPVISFILKNEISDF 657 (970)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 66666665 32 222 11 2344555555554431 2122121 111 11122333 66666666
Q ss_pred HHHHHHHHHHH---HHHhCch--hHHHHHHHhhhcccc-hhHHHHHHHHHHHhhhcC-------c-c--ccHHHHHHhcC
Q psy10461 1129 RRATVNTFGYI---AKAIGPH--DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCS-------P-F--TVLPALMNEYR 1192 (1359)
Q Consensus 1129 R~AAv~tLg~I---Ak~~Gpe--dVlp~LL~~Lk~qe~-~VRv~ta~AIg~LAea~g-------P-~--~VLPaLLnlLk 1192 (1359)
-+.|++.+... .+.+.|- .+...|++.++.... ..-...+.++..+-- .| + + -++-.+...+.
T Consensus 658 y~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit-yG~~ef~~~~~y~~i~~eI~~~~l~ 736 (970)
T COG5656 658 YQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT-YGKTEFMDAGIYGSICSEISKLCLC 736 (970)
T ss_pred HHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH-hCccccccccchhHHHHHHHHHHHc
Confidence 66667666532 2222210 122223333333221 111112233332210 12 1 1 23333344444
Q ss_pred CCCc--hhHHHHHHHHHHHHHHhhh-hchhhHHhHHHHHH--HHHhccChHHHHHHHHHH
Q psy10461 1193 VPEL--NVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLE--DALMDRDLVHRQTACATI 1247 (1359)
Q Consensus 1193 DpE~--nVR~~VlkaLs~Iae~IG~-~~kdYL~~VlPlLe--daL~D~D~~VRqtA~saI 1247 (1359)
..+. +=+.+||+-+..+.-.++. ....|++...-... -.+.|+....+..|..++
T Consensus 737 sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleli 796 (970)
T COG5656 737 SEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELI 796 (970)
T ss_pred chhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHH
Confidence 4443 5577899998888877775 44445543333222 123466666666555544
No 214
>KOG1848|consensus
Probab=75.23 E-value=74 Score=44.17 Aligned_cols=113 Identities=21% Similarity=0.225 Sum_probs=75.7
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchh------hHHhHHHHHHHH-------H-hccC-hHHHHHHHHH
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKD------YIYAVTPLLEDA-------L-MDRD-LVHRQTACAT 1246 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kd------YL~~VlPlLeda-------L-~D~D-~~VRqtA~sa 1246 (1359)
-++..|.++..|.-++||+++++++=.++..-|..... ...-|+|+|... - ..+. .+|-++-|-+
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 35666777778999999999999986666665553222 225688877621 1 1112 4667888888
Q ss_pred HHHHHhhhc--------CCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHH
Q psy10461 1247 IKHMALGVY--------GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 1294 (1359)
Q Consensus 1247 Ik~LAl~~~--------glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~ 1294 (1359)
|..||-.+. .-|+-+....+|.++.-.+.+.++++-..++.+|..+-.
T Consensus 1077 isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 887764322 115666667777777777778999998888888865544
No 215
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.08 E-value=21 Score=37.22 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=57.1
Q ss_pred ccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChH----HHHHHHHHHHHHHhh
Q psy10461 1180 PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLV----HRQTACATIKHMALG 1253 (1359)
Q Consensus 1180 P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~----VRqtA~saIk~LAl~ 1253 (1359)
+.+++.+|.+-|+.+.++|+..++.-|..+.+.||..+...+ ..++..|..++.+.... ||+.+...|...+..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999997554433 34666666666665422 787777777776644
Q ss_pred h
Q psy10461 1254 V 1254 (1359)
Q Consensus 1254 ~ 1254 (1359)
+
T Consensus 120 f 120 (140)
T PF00790_consen 120 F 120 (140)
T ss_dssp T
T ss_pred H
Confidence 4
No 216
>KOG0946|consensus
Probab=74.37 E-value=3.1e+02 Score=36.65 Aligned_cols=260 Identities=16% Similarity=0.148 Sum_probs=129.9
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ik 981 (1359)
.+.|..|+..+...+..||.-|++-|+.+.+..|++ +.+.++- .
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e---------~q~~ll~----~----------------------- 164 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE---------LQDALLV----S----------------------- 164 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH---------HHHHHHH----C-----------------------
Confidence 466888899999999999999999999999998887 2232221 0
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH----HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE----EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN 1057 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e----~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~ 1057 (1359)
+.-++.+..++.|.-..+|.+|.-+|+.+...-+.-++ ++.+..|+.++-+.=+-+-.=|+.-|+..+-.+..
T Consensus 165 ---P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 165 ---PMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred ---chhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 12233444566777777777777777766543322122 34444444444333211111234445554444433
Q ss_pred HhCCCCCCCch--hchHHHHHHHh-----cCC---CHHHH--HHHHHHHHHH---HhhCCCc--hhhH-HHHH---HHHH
Q psy10461 1058 VIGMTKMTPPI--KDLLPRLTPIL-----KNR---HEKVQ--ENCIDLVGRI---ADRGPEY--VSAR-EWMR---ICFE 1116 (1359)
Q Consensus 1058 vlG~~~lsp~l--~~lLP~L~~LL-----kDr---~~rVR--~AAielIg~I---A~~g~e~--v~~k-E~mr---Ic~e 1116 (1359)
.--+. +..+ ..++|++..+| .|. .|.-+ .+++.++-.+ ..-|... .... .+|. +...
T Consensus 242 ~N~SN--Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~ 319 (970)
T KOG0946|consen 242 NNISN--QNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDV 319 (970)
T ss_pred hCcch--hhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHH
Confidence 21111 1112 25899998754 354 56432 3334444333 2222110 0000 0221 2222
Q ss_pred HHHHHHhh--HHHHHHHHHHHHHHHHH-----------Hh----C-chhHHHHHHH-hhh-cccchhHHHHHHHHHHHh-
Q psy10461 1117 LLELLKAH--KKAIRRATVNTFGYIAK-----------AI----G-PHDVLATLLN-NLK-VQERQNRVCTTVAIAIVA- 1175 (1359)
Q Consensus 1117 LLelLkD~--~~sVR~AAv~tLg~IAk-----------~~----G-pedVlp~LL~-~Lk-~qe~~VRv~ta~AIg~LA- 1175 (1359)
|+.+|-.. -..|+-.++.++..+.. .. + |-..+..++- +.. .+-..+|++++.+|-..-
T Consensus 320 Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~ 399 (970)
T KOG0946|consen 320 LCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY 399 (970)
T ss_pred HHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Confidence 22333221 33455555555443322 11 0 1122222322 222 344457888877776432
Q ss_pred hhc-CccccHHHHHHhcCCCCch-hHHHH
Q psy10461 1176 ETC-SPFTVLPALMNEYRVPELN-VQNGV 1202 (1359)
Q Consensus 1176 ea~-gP~~VLPaLLnlLkDpE~n-VR~~V 1202 (1359)
+.. |.-.++..++..+.+...| +..+.
T Consensus 400 dN~~gq~~~l~tllp~~~nst~Nsl~ag~ 428 (970)
T KOG0946|consen 400 DNDDGQRKFLKTLLPSSTNSTSNSLSAGQ 428 (970)
T ss_pred cchhhHHHHHHHHhhhhccccccchhhhh
Confidence 222 3337888888888776653 44333
No 217
>KOG1999|consensus
Probab=74.27 E-value=30 Score=46.00 Aligned_cols=14 Identities=43% Similarity=0.373 Sum_probs=7.9
Q ss_pred CCCCChHHhhhcCC
Q psy10461 349 NRPLTDDELEAMFP 362 (1359)
Q Consensus 349 ~~~~~~~~~~~~~p 362 (1359)
|.-=|-+||.++=|
T Consensus 372 gV~PT~dELekF~~ 385 (1024)
T KOG1999|consen 372 GVKPTLDELEKFNP 385 (1024)
T ss_pred CcccCHHHHHhhcC
Confidence 34445566666655
No 218
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.14 E-value=59 Score=34.95 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc-cccccchHhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhhhh
Q psy10461 944 EEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG-KRVKPYLPQICGTILWRLN-NKSAKVRQQAADLISRIAVVMKTC 1020 (1359)
Q Consensus 944 ~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg-~~ikPyl~qILpiIl~LL~-Des~~VR~aAAe~Is~LA~vl~~~ 1020 (1359)
...+...+..++++...+. +..+..++.+++..+ +.+..+..+.+..++..++ ++.+.++..+..+++.|...+...
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3467777788888776655 788888888888874 3443444455555555554 467788999999999998877643
Q ss_pred hH------HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 1021 QE------EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 1021 ~e------~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
.+ ...+..++..++..+.+ .+....++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 22 24566666666666653 34444555666665554
No 219
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=73.94 E-value=1.9e+02 Score=37.43 Aligned_cols=91 Identities=12% Similarity=0.201 Sum_probs=50.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhCchh--------HHH
Q psy10461 1080 KNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIGPHD--------VLA 1150 (1359)
Q Consensus 1080 kDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLel-LkD~~~sVR~AAv~tLg~IAk~~Gped--------Vlp 1150 (1359)
.|..+.+|--|+..++.-....++++-..... ....| |.|.+..||....+++..+....+.-+ +..
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~l----ry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRKILGL----RYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHhhhcc----cccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 46666667666666665544444333221100 11123 677777888888888887777644322 233
Q ss_pred HHHHhhhcccchhHHHHHHHHHHH
Q psy10461 1151 TLLNNLKVQERQNRVCTTVAIAIV 1174 (1359)
Q Consensus 1151 ~LL~~Lk~qe~~VRv~ta~AIg~L 1174 (1359)
.+|+.++.+-..||+|....+..+
T Consensus 361 rILE~~r~D~d~VRi~sik~l~~l 384 (740)
T COG5537 361 RILEFLRTDSDCVRICSIKSLCYL 384 (740)
T ss_pred HHHHHHhhccchhhHHHHHHHHHH
Confidence 456666555445777765555443
No 220
>KOG4199|consensus
Probab=73.85 E-value=2.2e+02 Score=34.65 Aligned_cols=331 Identities=17% Similarity=0.167 Sum_probs=154.9
Q ss_pred ccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIV 973 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~La 973 (1359)
.++-+-|+-.++-.+...-.+.+..+=..++..|+.+...-+ . +..- .-+..++-+|.....+..+.+-+|..+.
T Consensus 98 ~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp-d-l~da---~g~~vvv~lL~~~~~~~dlt~~~~~~v~ 172 (461)
T KOG4199|consen 98 VLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP-D-LFDA---EAMAVVLKLLALKVESEEVTLLTLQWLQ 172 (461)
T ss_pred HHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc-c-hhcc---ccHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 455555554443333333557777788888888887665221 1 1110 1233444555444443355555555554
Q ss_pred hhccc-c-ccc-ch-HhHHHHHHHhhcCCCHH-HHHHHHHHHHHHHH------HhhhhhH-HhHHHH--HHHHHHHHhc-
Q psy10461 974 NQLGK-R-VKP-YL-PQICGTILWRLNNKSAK-VRQQAADLISRIAV------VMKTCQE-EKLMGH--LGVVLYEYLG- 1038 (1359)
Q Consensus 974 e~Lg~-~-ikP-yl-~qILpiIl~LL~Des~~-VR~aAAe~Is~LA~------vl~~~~e-~~lL~~--Ll~iLle~L~- 1038 (1359)
..+-. . .++ ++ ..+++.|+..++.+.-+ +=+++.+.+.-+.- +.+.... .-++.+ .+..|.|.|.
T Consensus 173 ~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A 252 (461)
T KOG4199|consen 173 KACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA 252 (461)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc
Confidence 44321 1 111 11 35677777555554333 44455555554421 0110000 011111 1223333331
Q ss_pred ccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHH
Q psy10461 1039 EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELL 1118 (1359)
Q Consensus 1039 De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLL 1118 (1359)
-..|+++.+.+.+|++++-. . ++...|++.|. .+.++
T Consensus 253 ~~dp~~L~~l~~tl~~lAVr-----------------------------~---E~C~~I~e~GG-----------l~tl~ 289 (461)
T KOG4199|consen 253 GIDPDSLVSLSTTLKALAVR-----------------------------D---EICKSIAESGG-----------LDTLL 289 (461)
T ss_pred cCCccHHHHHHHHHHHHHHH-----------------------------H---HHHHHHHHccC-----------HHHHH
Confidence 11355555555555555432 1 23344555554 12345
Q ss_pred HHHHh-hHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCch
Q psy10461 1119 ELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN 1197 (1359)
Q Consensus 1119 elLkD-~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~n 1197 (1359)
..+.| ....+|.++-..+..+.+..|.+.+-..++.. - |-..++..++.- ..+|+
T Consensus 290 ~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~----------g------------g~~~ii~l~~~h--~~~p~ 345 (461)
T KOG4199|consen 290 RCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK----------G------------GLDKIITLALRH--SDDPL 345 (461)
T ss_pred HHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh----------c------------ChHHHHHHHHHc--CCChH
Confidence 56666 45678888888888888877887766665521 0 001111111111 12344
Q ss_pred hHHHHHHHHHHHHHHhhhhchhhHHh-HHHHHHHHHhc-c-ChHHHHHHHHHHHHHHhhhcC-------CCchhHHhhhH
Q psy10461 1198 VQNGVLKALSFLFEYIGEMGKDYIYA-VTPLLEDALMD-R-DLVHRQTACATIKHMALGVYG-------FGCEDALTHLL 1267 (1359)
Q Consensus 1198 VR~~VlkaLs~Iae~IG~~~kdYL~~-VlPlLedaL~D-~-D~~VRqtA~saIk~LAl~~~g-------lG~EdaliHlL 1267 (1359)
|=..++-++++++-.....+...+.. .--+...++.- + -..|+..||..|..|+..-.. +|.|+ ++
T Consensus 346 Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~----Li 421 (461)
T KOG4199|consen 346 VIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK----LI 421 (461)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH----HH
Confidence 45555555555554443322222210 11111122211 1 234566688888887533221 14442 22
Q ss_pred HhhhcccccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhh
Q psy10461 1268 NYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQG 1308 (1359)
Q Consensus 1268 nlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpg 1308 (1359)
+.-. ..++.+...+-.++ .-||..+-++-.|-|
T Consensus 422 ~~A~----~~h~tce~~akaAL----RDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 422 RTAK----ANHETCEAAAKAAL----RDLGCDVYLREEWTG 454 (461)
T ss_pred HHHH----hcCccHHHHHHHHH----HhcCcchhhHHHhcc
Confidence 2222 24445555455555 668999888888887
No 221
>KOG2022|consensus
Probab=72.33 E-value=3.6e+02 Score=36.48 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=88.0
Q ss_pred ccccccChHh--HHHHHhh---hcCCC--CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHH
Q psy10461 894 KPARLVGASE--IINRVVD---DLKDE--NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVML 966 (1359)
Q Consensus 894 ~LA~klg~~e--iI~~Ll~---~LKDe--s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~l 966 (1359)
++|.-+|.++ .+.+++. .+|=+ ++.+=+.+...|+..+.-++.....- ..-+..++..+..++ +...+.
T Consensus 493 sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~l---n~sl~~L~~~Lh~sk-~s~q~i 568 (982)
T KOG2022|consen 493 SVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYL---NPSLPLLFQGLHNSK-ESEQAI 568 (982)
T ss_pred HHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCccc---CchHHHHHHHhcCch-HHHHHH
Confidence 3445555533 3666554 34433 88899999999999998887652110 012333333332221 223445
Q ss_pred HHHHHHHhhcccccccchHhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh
Q psy10461 967 NGFGTIVNQLGKRVKPYLPQICGTILWRLNN--KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL 1037 (1359)
Q Consensus 967 kaLg~Lae~Lg~~ikPyl~qILpiIl~LL~D--es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L 1037 (1359)
..+.++|+.+...+.||..+++.++...++- -...+|.++..+||.+-..+........+-+++.+++++|
T Consensus 569 ~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 569 STLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred HHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999998887763 4556777777776666555542222345666666677665
No 222
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.88 E-value=3.3e+02 Score=35.90 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=68.0
Q ss_pred HhhhcccchhHHHHHHHHHHHhhhcC--c-----c-----ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH
Q psy10461 1154 NNLKVQERQNRVCTTVAIAIVAETCS--P-----F-----TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI 1221 (1359)
Q Consensus 1154 ~~Lk~qe~~VRv~ta~AIg~LAea~g--P-----~-----~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL 1221 (1359)
..|.+...-+|.|...+.+.+.+... + + .++-.+..-|.|..|.+|..+++-+..+|..-.. ...--
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk-~~~~r 384 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK-TVGRR 384 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-ccchH
Confidence 33444445589988877776654441 1 1 5666667778899999999999998888875332 11111
Q ss_pred HhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1222 YAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1222 ~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
+.|.-++.+.+.|+..+||..|...+..+
T Consensus 385 ~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 385 HEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 57888888889999999999888877765
No 223
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=71.74 E-value=5.5 Score=33.49 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=30.4
Q ss_pred HHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHH
Q psy10461 968 GFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLI 1010 (1359)
Q Consensus 968 aLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~I 1010 (1359)
+++.+++.-+..+. .+.++..|...+.|+++.||.+|.++|
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34555555544332 258889999999999999999998864
No 224
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=70.41 E-value=2.9e+02 Score=34.62 Aligned_cols=185 Identities=12% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhccc----ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH-h
Q psy10461 963 VVMLNGFGTIVNQLGK----RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEY-L 1037 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~----~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~-L 1037 (1359)
|.+..+++.++..... .+..+-..++|++...|+.+-...=--+-++++.+-+.-......+....++++|+.- +
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l 169 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL 169 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch
Confidence 7777777877776443 2445667777887777775422111111222222222211000123334455555543 3
Q ss_pred cccChHHHHHHHHHHHHHHHHhCCCCC-CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHH
Q psy10461 1038 GEEYPEVLGSILGALKAIVNVIGMTKM-TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFE 1116 (1359)
Q Consensus 1038 ~De~pEVl~siL~AL~aIa~vlG~~~l-sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~e 1116 (1359)
++ .+.-+-+++..|.++...-..... ...+..+|-.+-.++..+.-. ..+.+++..|...++...-..-+..+..-
T Consensus 170 We-~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~l 246 (435)
T PF03378_consen 170 WE-RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTL 246 (435)
T ss_dssp GG-STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHH
T ss_pred hc-cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 43 333334444555555444322111 122334444444455544322 23557777777755432111102223433
Q ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHhCchhHHH
Q psy10461 1117 LLELLKAH-KKAIRRATVNTFGYIAKAIGPHDVLA 1150 (1359)
Q Consensus 1117 LLelLkD~-~~sVR~AAv~tLg~IAk~~GpedVlp 1150 (1359)
++.-|+.. ..+..+..+--+..++-..|++.++.
T Consensus 247 ll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~ 281 (435)
T PF03378_consen 247 LLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQ 281 (435)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 44445543 33444455556677777778864433
No 225
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=70.28 E-value=14 Score=36.06 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHhCchhHHHHHHHhhh
Q psy10461 1081 NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK--AIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157 (1359)
Q Consensus 1081 Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~--sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk 1157 (1359)
+.||.+|.-++++++.|+.+.....+.. -.|+...++..|.|.+. ..+--|+-.|..+ |++.|-..++++++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L-~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTL-QPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 6799999999999999998644332222 23566666777877644 3455555555444 66666666777664
No 226
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.02 E-value=30 Score=33.97 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=38.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhh
Q psy10461 1078 ILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNL 1156 (1359)
Q Consensus 1078 LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~L 1156 (1359)
-+.|.-.-||..++..+..+..... .....+..+..-++..|+|...-|=-+|++.|..++..+ |+.+++.|++.+
T Consensus 11 ~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p~~vl~~L~~~y 86 (92)
T PF10363_consen 11 DLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-PDEVLPILLDEY 86 (92)
T ss_pred HccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-hHHHHHHHHHHH
Confidence 3445555566666666666655333 111112223333345556665556666666666666653 345555555443
No 227
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=69.85 E-value=11 Score=36.98 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch
Q psy10461 913 KDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT 960 (1359)
Q Consensus 913 KDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~ 960 (1359)
.|+.|.+|+-|++.+..|+..++.. .+.+.+++.+.++-.|.|...
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~--~~~L~~Ri~~tl~k~l~d~~~ 61 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSS--YPTLQPRITRTLLKALLDPKK 61 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999999999976 356777899999998887654
No 228
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=69.70 E-value=7.9 Score=31.67 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy10461 986 QICGTILWRLNNKSAKVRQQAADLISRIA 1014 (1359)
Q Consensus 986 qILpiIl~LL~Des~~VR~aAAe~Is~LA 1014 (1359)
..+|.|..++++.+..|+.+|++++++|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46888999999999999999999999987
No 229
>KOG2549|consensus
Probab=69.47 E-value=36 Score=43.01 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=84.3
Q ss_pred cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc-ChHHHHHHHHHHHHHHHH
Q psy10461 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE-YPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De-~pEVl~siL~AL~aIa~v 1058 (1359)
.+-|.++|...+.. .++.-|++|.++|..=+ =|..++|-|...+.|. .-.+..+.+..|-.+..+
T Consensus 205 lQlYy~~It~a~~g----~~~~~r~eAL~sL~TDs----------GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 205 LQLYYKEITEACTG----SDEPLRQEALQSLETDS----------GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHhhccCc----------cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 34566666665443 67778888877654321 1222333333333221 111111222222222221
Q ss_pred ---h-CC--CCCCCchhchHHHHHHHh----------cCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH
Q psy10461 1059 ---I-GM--TKMTPPIKDLLPRLTPIL----------KNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 1122 (1359)
Q Consensus 1059 ---l-G~--~~lsp~l~~lLP~L~~LL----------kDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk 1122 (1359)
+ .- =.+.||+.+++|.++..+ .|+||.+|--++.++..|+..-....... ..|+...+...|.
T Consensus 271 ~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L-~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 271 VRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNL-QPRITRTLSKALL 349 (576)
T ss_pred HHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhc
Confidence 1 11 125678888999988732 38999999999999998877322111111 3456666666666
Q ss_pred hh--HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhh
Q psy10461 1123 AH--KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 1157 (1359)
Q Consensus 1123 D~--~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk 1157 (1359)
|. ..+-+.-|+..|..++. +.|-..|+++|+
T Consensus 350 D~~~~~st~YGai~gL~~lg~----~~I~~~ilp~L~ 382 (576)
T KOG2549|consen 350 DNKKPLSTHYGAIAGLSELGH----EVIRTVILPNLK 382 (576)
T ss_pred CCCCCchhhhhHHHHHHHhhh----hhhhheeccchH
Confidence 65 34555666665555443 344444455553
No 230
>KOG2149|consensus
Probab=69.31 E-value=72 Score=39.05 Aligned_cols=113 Identities=11% Similarity=0.205 Sum_probs=82.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhc-ccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQL-GKRVK 981 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~L-g~~ik 981 (1359)
.+..|+..+|+-+..||..|...|.++..+. |..+..++. .++..+.+.+.|.+..+ ....+.+..++... ...+.
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~-~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLY-ALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHH-HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 4777889999999999999999999999873 443443322 24555556665554444 34444444444433 33478
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK 1018 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~ 1018 (1359)
|++.-+++.+...+.+-.+.||..+...++.+.....
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 9999999999999999999999999988888876654
No 231
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=68.38 E-value=31 Score=34.87 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Q psy10461 963 VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYE 1035 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle 1035 (1359)
.-++++++.+++..|..+..+.+||+..+...+.. +..|..|.+++..+...+....-..++...+..++.
T Consensus 33 ~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 33 KRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 67889999999988888888999999999988875 459999999999999888743333444444444443
No 232
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=67.89 E-value=2e+02 Score=34.80 Aligned_cols=81 Identities=17% Similarity=0.396 Sum_probs=52.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCC-----CchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q psy10461 1071 LLPRLTPILKNRHEKVQENCIDLVGRIAD-RGP-----EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 1144 (1359)
Q Consensus 1071 lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~-----e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~G 1144 (1359)
++..+..++...+--.|++++.++|.|-. +.. .|+...+-++++ +.+|+|..+.||-.|...|..+...-.
T Consensus 210 ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~---M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 210 FFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLM---MNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHH---HHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHH---HHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 34444457778888889999999999865 222 233333333333 678999999999999999999888632
Q ss_pred -chhHHHHHHH
Q psy10461 1145 -PHDVLATLLN 1154 (1359)
Q Consensus 1145 -pedVlp~LL~ 1154 (1359)
+..|...|..
T Consensus 287 K~~~I~~iL~~ 297 (335)
T PF08569_consen 287 KPPPIVDILIK 297 (335)
T ss_dssp -BHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 2456665553
No 233
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=67.53 E-value=18 Score=42.47 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHH---hHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEE---KLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV 1056 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~---~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa 1056 (1359)
....++.++...+..+...|+.+++.++..-...... ..+..++..|-..+.....+....++.+|..+.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 4455556888899999999999999997654422222 444444444444443333344455556666654
No 234
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=67.01 E-value=7.7 Score=31.73 Aligned_cols=29 Identities=28% Similarity=0.317 Sum_probs=26.4
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
.++|.|+++|++++..||..++++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999998765
No 235
>KOG1048|consensus
Probab=66.93 E-value=2.5e+02 Score=37.20 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=60.5
Q ss_pred HHHHHh-hHHHHHHHHHHHHHHHHHHhCc------------hhHHHHHHHhhhcccchhHHHHHHHHHHHhh------hc
Q psy10461 1118 LELLKA-HKKAIRRATVNTFGYIAKAIGP------------HDVLATLLNNLKVQERQNRVCTTVAIAIVAE------TC 1178 (1359)
Q Consensus 1118 LelLkD-~~~sVR~AAv~tLg~IAk~~Gp------------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAe------a~ 1178 (1359)
+.+|.. .+..+-++++.+|..++..-++ +..++.|++.|+.++..|=.+++.++..++. .+
T Consensus 524 l~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li 603 (717)
T KOG1048|consen 524 LLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI 603 (717)
T ss_pred HHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh
Confidence 445543 3667888889888877664333 3446678888888776655555667776653 23
Q ss_pred CccccHHHHHHhcCCCCc------hhHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPEL------NVQNGVLKALSFL 1209 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~------nVR~~VlkaLs~I 1209 (1359)
| ...||-|++.|.+..+ ++=..||.+|-.|
T Consensus 604 g-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ni 639 (717)
T KOG1048|consen 604 G-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNI 639 (717)
T ss_pred h-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHH
Confidence 4 3589999999998766 3445677776443
No 236
>KOG1293|consensus
Probab=66.92 E-value=4e+02 Score=34.91 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=81.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHh-----C--chhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc-------ccH
Q psy10461 1119 ELLKAHKKAIRRATVNTFGYIAKAI-----G--PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-------TVL 1184 (1359)
Q Consensus 1119 elLkD~~~sVR~AAv~tLg~IAk~~-----G--pedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~-------~VL 1184 (1359)
++++|+ ..+.||+..+..++..+ | ..++...|++.+-..+-.+-.++.-|+-.+-=.+++. ..+
T Consensus 386 ~~~kd~--~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 386 PPIKDH--DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred cccccH--HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 334555 56778777776665544 2 2467777777774444334444333333333333442 688
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1185 PALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1185 PaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
-.+..++.++.+|+|-+.++.|..+.=.+.+..+.-. .--...+.++.+|+|.-|+..+.+.+..+-
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999888888655433343222211 122336777888999888877777776653
No 237
>KOG0946|consensus
Probab=66.64 E-value=2.4e+02 Score=37.55 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=28.1
Q ss_pred cChHhHHHHHhhhcCCCC-HHHHHHHHHHHHHHHHhc
Q psy10461 899 VGASEIINRVVDDLKDEN-EQYRKMVMESIEKTMSNL 934 (1359)
Q Consensus 899 lg~~eiI~~Ll~~LKDes-~~VR~~Aa~~L~~Ia~~L 934 (1359)
-.+.|-|+.|++.+.+.. ..=|+.|++.|..+++..
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY 54 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY 54 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 345677899998887664 467999999999998743
No 238
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=65.51 E-value=28 Score=35.21 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=47.8
Q ss_pred cHHHHHHhcCCCC--c--hhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1183 VLPALMNEYRVPE--L--NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1183 VLPaLLnlLkDpE--~--nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
++..+-+.+.|+. . +-|..++.+++++-+.+|.....++++|+-||+.++..++ .|..+.++-..+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~ 81 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHH
Confidence 4444556666655 2 3488999999999999898788888999999999996443 666555554444
No 239
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=65.09 E-value=51 Score=34.29 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=56.4
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccCh--HHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDL--VHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~--~VRqtA~saIk~LA 1251 (1359)
+|.+++.+|.+-++.+.++|+..++.-|..+.+.||..+...+ ..++..|..++.+... .||.-+...+..-+
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999998655444 4566777777776643 26766666666655
No 240
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.95 E-value=3.3e+02 Score=34.94 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHhhHHHHHHHHHHHHH--HHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchh
Q psy10461 1121 LKAHKKAIRRATVNTFG--YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV 1198 (1359)
Q Consensus 1121 LkD~~~sVR~AAv~tLg--~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nV 1198 (1359)
||+....|...|+-.+. .+++-+|.+-++...-..+--.+.++|.+.-.|+|+++..--.-.|+-+|-+.+.|.+.||
T Consensus 613 ~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v 692 (881)
T COG5110 613 LKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNV 692 (881)
T ss_pred chhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhH
Confidence 55554455444443333 3344555555555544444455678999989999988754322389999999999999999
Q ss_pred HHHHHHHHHH
Q psy10461 1199 QNGVLKALSF 1208 (1359)
Q Consensus 1199 R~~VlkaLs~ 1208 (1359)
-.+.+-+++-
T Consensus 693 ~~ntIfamGL 702 (881)
T COG5110 693 IINTIFAMGL 702 (881)
T ss_pred HHHHHHHhhc
Confidence 9888888754
No 241
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.83 E-value=2e+02 Score=34.31 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=60.2
Q ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhC---chhHHHHHHHhhhcccchhHHHHHHHHHHHhh-----hcCc--c
Q psy10461 1113 ICFELLELLKA-HKKAIRRATVNTFGYIAKAIG---PHDVLATLLNNLKVQERQNRVCTTVAIAIVAE-----TCSP--F 1181 (1359)
Q Consensus 1113 Ic~eLLelLkD-~~~sVR~AAv~tLg~IAk~~G---pedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAe-----a~gP--~ 1181 (1359)
++..+++++.. .+.....+.+.+|+.=...++ ++.++..+..-++.....+|.+-..+++.+.. .... .
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~ 102 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAE 102 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 77777788754 577788888888887777663 24566666666766665689988888887654 1122 2
Q ss_pred ccHHHHHHhcC----CCCchhHH
Q psy10461 1182 TVLPALMNEYR----VPELNVQN 1200 (1359)
Q Consensus 1182 ~VLPaLLnlLk----DpE~nVR~ 1200 (1359)
.++|.|+..++ .|-+..++
T Consensus 103 ~~~~~L~~~~~~~~~~p~~~~~~ 125 (339)
T PF12074_consen 103 PFLPKLLQSLKEASANPLQSAQN 125 (339)
T ss_pred HHHHHHHHHHHHHHhCCCCcccc
Confidence 68888888885 45555553
No 242
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=64.39 E-value=55 Score=33.92 Aligned_cols=77 Identities=17% Similarity=0.033 Sum_probs=57.6
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc---cChHHHHHHHHHHHHHHhh
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD---RDLVHRQTACATIKHMALG 1253 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D---~D~~VRqtA~saIk~LAl~ 1253 (1359)
++.+.+.+|.+-++.+.++|+..++..|..+.+.||..+...+ ...+--|.+++.+ .+..||.-+...+...+..
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999999998543333 1333345556654 3678888788888777644
Q ss_pred hc
Q psy10461 1254 VY 1255 (1359)
Q Consensus 1254 ~~ 1255 (1359)
+.
T Consensus 114 f~ 115 (133)
T cd03561 114 FG 115 (133)
T ss_pred hc
Confidence 44
No 243
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=63.69 E-value=59 Score=41.06 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=87.3
Q ss_pred HhHHHHHhhhcCCC--CHHHHHHHHHHH---HHHHHhcCccchhhhHHHHHHHHHHHhhccC-----chhH----HHHHH
Q psy10461 902 SEIINRVVDDLKDE--NEQYRKMVMESI---EKTMSNLGAADIDSRLEEQLIDGILYAFQEQ-----TTED----VVMLN 967 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDe--s~~VR~~Aa~~L---~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~-----~~eD----~v~lk 967 (1359)
..++..+...|.+. +..+|..+++-+ ..+....++..+ ..+.+-++.++.|.+++. ..++ ..+..
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 34566667778877 789999999999 888887777633 356777888888888411 1122 56778
Q ss_pred HHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH
Q psy10461 968 GFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE 1022 (1359)
Q Consensus 968 aLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e 1022 (1359)
++|.++...+..+..- -.++..+...+.++++.||...-++++.++..+.....
T Consensus 397 ~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~ 450 (501)
T PF13001_consen 397 TLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD 450 (501)
T ss_pred HHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999998876322 34444555555889999999999999999998875443
No 244
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=62.90 E-value=33 Score=34.43 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=39.7
Q ss_pred CchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1195 ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1195 E~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
...-|..++++|+.+.+.+|.....+.++|+-||+.++... ..|..++++-..+
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 34467899999999999777767777788888999888655 5666555555444
No 245
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=62.32 E-value=1.7e+02 Score=35.53 Aligned_cols=136 Identities=15% Similarity=0.093 Sum_probs=88.9
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhH--------------HHHHHHHHHHhhccCchhHHHHHHHHH
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRL--------------EEQLIDGILYAFQEQTTEDVVMLNGFG 970 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L--------------~~~Lld~LLplLqd~~~eD~v~lkaLg 970 (1359)
++.++..+-+....+|.+|+.....+...+|++..-... ...+.+.+..++.+.. +...+.+.=+
T Consensus 177 ~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~-~~~~a~~iW~ 255 (372)
T PF12231_consen 177 FPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKD-EYKLAMQIWS 255 (372)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcC-CcchHHHHHH
Confidence 667777777888899999999999988889885222110 1111111222222211 1133444444
Q ss_pred HHHhhcccc-c--ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH--HhHHHHHHHHHHHHhcccC
Q psy10461 971 TIVNQLGKR-V--KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE--EKLMGHLGVVLYEYLGEEY 1041 (1359)
Q Consensus 971 ~Lae~Lg~~-i--kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e--~~lL~~Ll~iLle~L~De~ 1041 (1359)
.++.-++.. . .+|+++.+.+.+...++.++.||.+|-.++..+...+..... ...+.-|+.++...++.+.
T Consensus 256 ~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~ 331 (372)
T PF12231_consen 256 VVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREK 331 (372)
T ss_pred HHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccc
Confidence 444445543 2 489999999999999999999999999999999996653211 4566667777777775443
No 246
>KOG0803|consensus
Probab=61.89 E-value=6.7e+02 Score=35.79 Aligned_cols=107 Identities=11% Similarity=0.233 Sum_probs=72.1
Q ss_pred cChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhh----ccCchhH-HHHHHHHHHHH
Q psy10461 899 VGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF----QEQTTED-VVMLNGFGTIV 973 (1359)
Q Consensus 899 lg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplL----qd~~~eD-~v~lkaLg~La 973 (1359)
++-...+..++..|--.++..+..|+..+..++...-.+... -++.+....+ .|.+..+ ......+..++
T Consensus 37 ~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~-----~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~ 111 (1312)
T KOG0803|consen 37 LELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELK-----GILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLL 111 (1312)
T ss_pred hccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHh-----hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 334444666777787888999999999999988866554111 1122222222 2333333 45566788899
Q ss_pred hhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHH
Q psy10461 974 NQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLI 1010 (1359)
Q Consensus 974 e~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~I 1010 (1359)
..+.+.+.||+..++|+..--.-|....|-.+|-...
T Consensus 112 t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf 148 (1312)
T KOG0803|consen 112 TKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASF 148 (1312)
T ss_pred HHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHH
Confidence 9999999999999999988777787776666555443
No 247
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=61.32 E-value=5.3e+02 Score=34.44 Aligned_cols=234 Identities=15% Similarity=0.142 Sum_probs=124.6
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPY 983 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPy 983 (1359)
..+.....++|.+-+||..|+-++.-+..+.-........++.++..+|.+-.+-+. .++..++..+++..++.+.||
T Consensus 500 aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei--D~LS~vMe~fVe~fseELspf 577 (970)
T COG5656 500 AYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI--DPLSMVMESFVEYFSEELSPF 577 (970)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc--hHHHHHHHHHHHHhHHhhchh
Confidence 455556778888889999999999998876644444455566777877776554333 344444556666666666677
Q ss_pred hHhHHHHHHH--------hhcCC---CHHH--HHHHH-HHHHHHHHHh-hhhhHHhHHHHH----HHHHHHHhcccChHH
Q psy10461 984 LPQICGTILW--------RLNNK---SAKV--RQQAA-DLISRIAVVM-KTCQEEKLMGHL----GVVLYEYLGEEYPEV 1044 (1359)
Q Consensus 984 l~qILpiIl~--------LL~De---s~~V--R~aAA-e~Is~LA~vl-~~~~e~~lL~~L----l~iLle~L~De~pEV 1044 (1359)
..++...|.. ++.+. +..| ++-|| -++..+...+ +.......|..+ .|+.---|+++-.|.
T Consensus 578 a~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~df 657 (970)
T COG5656 578 APELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDF 657 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 6666665543 23222 2222 22222 3333333222 111112222222 222222233333333
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHH----hcCCCH-HHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHH
Q psy10461 1045 LGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI----LKNRHE-KVQENCIDLVGRIADRGPEYVSAR-EWMRICFELL 1118 (1359)
Q Consensus 1045 l~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~L----LkDr~~-rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLL 1118 (1359)
..-++.-++.+.=.. + .+.++.+.+.++ +.+... ---+.++.++..|...|...+... .+..+|.++.
T Consensus 658 y~Ea~dildg~tf~s--k----eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~ 731 (970)
T COG5656 658 YQEALDILDGYTFMS--K----EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEIS 731 (970)
T ss_pred HHHHHHHHhhhhHHH--H----HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHH
Confidence 333333333332211 1 133455555553 444442 235788889999998886655543 3667887665
Q ss_pred HH-HHhhHH--HHHHHHHHHHHHHHHHhCc
Q psy10461 1119 EL-LKAHKK--AIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1119 el-LkD~~~--sVR~AAv~tLg~IAk~~Gp 1145 (1359)
.. |.+.+. .=++.+++.+..++-.++.
T Consensus 732 ~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 732 KLCLCSEENFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred HHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence 43 333333 2245677777777777665
No 248
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=60.39 E-value=2.9e+02 Score=33.01 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhhCCCc--hhhHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHhCch------hHHH----H
Q psy10461 1085 KVQENCIDLVGRIADRGPEY--VSAREWMRICFELLELLKAHKKAIRRAT-VNTFGYIAKAIGPH------DVLA----T 1151 (1359)
Q Consensus 1085 rVR~AAielIg~IA~~g~e~--v~~kE~mrIc~eLLelLkD~~~sVR~AA-v~tLg~IAk~~Gpe------dVlp----~ 1151 (1359)
.|++.++.++..+.+.+.+. +...-+..+|..++.-.++.....|..- .+.+..|.+.++.. .++. .
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 36788899999988866521 1111122234333333344444455543 33344555555541 2222 2
Q ss_pred HHHhhhccc--c-hhHHHHHHHHHHHhhhcC-------cc---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh---
Q psy10461 1152 LLNNLKVQE--R-QNRVCTTVAIAIVAETCS-------PF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--- 1215 (1359)
Q Consensus 1152 LL~~Lk~qe--~-~VRv~ta~AIg~LAea~g-------P~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~--- 1215 (1359)
.+++++.+. + .+|..-..-+..+.+.|- +. .++-.++-.++.+.++|-...+.+|..+.+.+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 355554332 2 367776666666666652 21 6778888888999999999999999888888865
Q ss_pred h-----chhhHHhHHHHHHHHHhccC
Q psy10461 1216 M-----GKDYIYAVTPLLEDALMDRD 1236 (1359)
Q Consensus 1216 ~-----~kdYL~~VlPlLedaL~D~D 1236 (1359)
. .+.|+..++-.+..+++|.+
T Consensus 202 ~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 1 22344455666666778876
No 249
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=59.39 E-value=79 Score=33.42 Aligned_cols=73 Identities=22% Similarity=0.122 Sum_probs=55.4
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHh-ccChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM-DRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~-D~D~~VRqtA~saIk~LA 1251 (1359)
+|.+.+-+|.+-++.+.++|+..++.-|..+.+.||..+...+ ..++..|.+++. ..+..|+.-+...|..-+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999999999999998543333 345555666665 345677777777776665
No 250
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=59.08 E-value=4.6e+02 Score=32.95 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=76.7
Q ss_pred cCccchhhhHHHHHHHHHHHhhccCch-hH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy10461 934 LGAADIDSRLEEQLIDGILYAFQEQTT-ED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLIS 1011 (1359)
Q Consensus 934 LGpe~l~~~L~~~Lld~LLplLqd~~~-eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is 1011 (1359)
+....+++.-...+++.++-.....+. +| ..++..|..++. .|..-..-+..++.+|-...+-. ...+.+=.++.
T Consensus 164 fn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~ 240 (464)
T PF11864_consen 164 FNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMR 240 (464)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHH
Confidence 334333433334555655555444333 33 667777777765 22221222333333333222211 33444445555
Q ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHh--cccChHHHHHHHHHHHHHHHHhCCCCCCC-chhc--hHHHHHHHhcCCCHHH
Q psy10461 1012 RIAVVMKTCQEEKLMGHLGVVLYEYL--GEEYPEVLGSILGALKAIVNVIGMTKMTP-PIKD--LLPRLTPILKNRHEKV 1086 (1359)
Q Consensus 1012 ~LA~vl~~~~e~~lL~~Ll~iLle~L--~De~pEVl~siL~AL~aIa~vlG~~~lsp-~l~~--lLP~L~~LLkDr~~rV 1086 (1359)
+|+.-- ....++..+.-+|.+.= ...+..++++++..+..+.-..|.+.+.. +... ++|.+...++.++.+|
T Consensus 241 nL~~S~---~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v 317 (464)
T PF11864_consen 241 NLLKSH---LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV 317 (464)
T ss_pred HHHcCc---cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee
Confidence 554211 11344444444441110 11123344555555555544443333322 2334 8899998899888888
Q ss_pred HHHHHHHHHHHH
Q psy10461 1087 QENCIDLVGRIA 1098 (1359)
Q Consensus 1087 R~AAielIg~IA 1098 (1359)
=..++..+..+-
T Consensus 318 ~~eIl~~i~~ll 329 (464)
T PF11864_consen 318 DYEILLLINRLL 329 (464)
T ss_pred hHHHHHHHHHHH
Confidence 777777777765
No 251
>KOG2149|consensus
Probab=58.63 E-value=1.9e+02 Score=35.68 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=80.6
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
-++..|++ .+++-+..||+.|...+-.+-..-. ......+.-++.-+.+..-|+...|+...+..++.+.-....
T Consensus 58 ltlkeLl~----qlkHhNakvRkdal~glkd~l~s~p-~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~ 132 (393)
T KOG2149|consen 58 LTLKELLS----QLKHHNAKVRKDALNGLKDLLKSHP-AELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACK 132 (393)
T ss_pred ccHHHHHh----hhcCchHhhhHHHHHHHHHHHHhCh-HHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch
Confidence 34444444 6788999999999877665543311 000111222333333445677777887777888887666665
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhh
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSA 1107 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~ 1107 (1359)
+.++|.+.-++|.+...+.+-.+.||..+...+..++..++..+..
T Consensus 133 e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 133 EDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred hhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 5567766667777777888999999999999999999988655443
No 252
>KOG2160|consensus
Probab=57.43 E-value=3.6e+02 Score=32.83 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=78.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHH-----hHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCC
Q psy10461 990 TILWRLNNKSAKVRQQAADLISRIAVVMKTCQEE-----KLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 1064 (1359)
Q Consensus 990 iIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~-----~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~l 1064 (1359)
.+.+.++|+ ...|+-..+.+....+.++...+. +.+.. ++.-.....+..++..-.++..|..++..++....
T Consensus 42 ~~~~~~~~~-ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~-~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAnd 119 (342)
T KOG2160|consen 42 MAEAKLKDE-KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM-IPIVILNSSSVDLEDKEDALDNLEELVEDIDNAND 119 (342)
T ss_pred hhhhhccCc-ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh-hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHh
Confidence 334444433 556666666666665444422221 11111 11100111223444444455555555555532211
Q ss_pred CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC---CchhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Q psy10461 1065 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGP---EYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1065 sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~---e~v~~kE~mrIc~eLLelLk-D~~~sVR~AAv~tLg~IA 1140 (1359)
--.+ ..+..+...+++.+..||+.|++.||..+...+ +.+.+.. ....|+.+|. +....+|..|.-+++.+.
T Consensus 120 l~~~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~---~L~~Ll~~ls~~~~~~~r~kaL~AissLI 195 (342)
T KOG2160|consen 120 LISL-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG---ALSKLLKILSSDDPNTVRTKALFAISSLI 195 (342)
T ss_pred Hhhc-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc---cHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 0112 234444458899999999999999999988543 2222211 2223445554 345578888888888877
Q ss_pred HHhCc
Q psy10461 1141 KAIGP 1145 (1359)
Q Consensus 1141 k~~Gp 1145 (1359)
..+.+
T Consensus 196 Rn~~~ 200 (342)
T KOG2160|consen 196 RNNKP 200 (342)
T ss_pred hcCcH
Confidence 76655
No 253
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=56.01 E-value=3.9e+02 Score=31.17 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=54.1
Q ss_pred HHHHHHhhhcCccccHHHHHHhcCCCCchhH--H--HHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc--ChHHHHH
Q psy10461 1169 VAIAIVAETCSPFTVLPALMNEYRVPELNVQ--N--GVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQT 1242 (1359)
Q Consensus 1169 ~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR--~--~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~--D~~VRqt 1242 (1359)
.|+-.||+. .....+|.++++++-++--+- + .+-..+..+.-.+|. .. ...|.+++.|+ +.-+|..
T Consensus 61 ~a~~LLaq~-re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------G~-~~~L~~li~~~~~~~yvR~a 132 (249)
T PF06685_consen 61 YALYLLAQF-REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------GD-IEPLKELIEDPDADEYVRMA 132 (249)
T ss_pred HHHHHHHHH-hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------CC-HHHHHHHHhCCcHHHHHHHH
Confidence 333344443 234578889999975443100 0 111112222222211 01 23455566666 4678888
Q ss_pred HHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHH
Q psy10461 1243 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 1289 (1359)
Q Consensus 1243 A~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaL 1289 (1359)
|++++.+++..-. ...+.++.++..++--++..+...+...++.++
T Consensus 133 a~~aL~~l~~~~~-~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~ 178 (249)
T PF06685_consen 133 AISALAFLVHEGP-ISREEVIQYFRELLNYFLERNPSFLWGSLVADI 178 (249)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 8888888864322 234455544444443334334334444455544
No 254
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=55.74 E-value=1.1e+02 Score=31.12 Aligned_cols=32 Identities=34% Similarity=0.362 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhCch---hHHHHHHHhhhc
Q psy10461 1127 AIRRATVNTFGYIAKAIGPH---DVLATLLNNLKV 1158 (1359)
Q Consensus 1127 sVR~AAv~tLg~IAk~~Gpe---dVlp~LL~~Lk~ 1158 (1359)
.||.-.+.++..|+...-|+ ++++.+++.++.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~ 37 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS 37 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc
Confidence 35666666666666655332 566666655544
No 255
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=55.42 E-value=3.1e+02 Score=35.61 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=81.4
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHhhhh--chhhHHhHH-HHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhh
Q psy10461 1190 EYRVPELNVQNGVLKALSFLFEYIGEM--GKDYIYAVT-PLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL 1266 (1359)
Q Consensus 1190 lLkDpE~nVR~~VlkaLs~Iae~IG~~--~kdYL~~Vl-PlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHl 1266 (1359)
.|-|..--||..+.|.+.+++...... ..+++.-.. -.|+-+..|.|. ||..+..++.++.-.-..-|.| +
T Consensus 322 ~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~~Se--I--- 395 (740)
T COG5537 322 SLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVLSSSE--I--- 395 (740)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcccchhH--H---
Confidence 456888889999999999999887641 122332222 244556668888 9988888887774221221222 2
Q ss_pred HHhhhcccccCChHHHHHHHHHHHHHHHhhchHH------H--HHhHhhhhccccccchhhHHHHH
Q psy10461 1267 LNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR------I--LQYVLQGLFHPARKVRDVYWKIY 1324 (1359)
Q Consensus 1267 LnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~------l--l~~vLpgLfhpA~kvrd~~WRvy 1324 (1359)
+++..-++|..|+=+....++++.+|.+....+ + .+++|+.+......-++..|-+|
T Consensus 396 -lIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~qgse~~f~v~~~iF 460 (740)
T COG5537 396 -LIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQGSERYFVVCEEIF 460 (740)
T ss_pred -HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHhhhhccchhHHHHH
Confidence 223333556566545556677777666654422 2 48999998888877777788777
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=55.23 E-value=1.5e+02 Score=32.63 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHhhh-c-CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh
Q psy10461 1148 VLATLLNNLKVQERQNRVCTTVAIAIVAET-C-SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 1215 (1359)
Q Consensus 1148 Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea-~-gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~ 1215 (1359)
.++.+++...+.+..+|..+...++.+... + .|-..+|+|+.+.-||++.+|..+...+..+++.-+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 445555555555556666655555544331 1 3668899999999999999999999999888877654
No 257
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=53.67 E-value=72 Score=33.72 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=51.6
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc------cChHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD------RDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D------~D~~VRqtA~saIk~L 1250 (1359)
||.+.+-+|.+-++.+.++|+..++..|..+.+.||..+..-+ ..++.-|.+++.+ .+..||+-....+..-
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4557788999999999999999999999999999998543333 2344444445543 3567776666666554
Q ss_pred H
Q psy10461 1251 A 1251 (1359)
Q Consensus 1251 A 1251 (1359)
+
T Consensus 115 ~ 115 (139)
T cd03567 115 T 115 (139)
T ss_pred H
Confidence 4
No 258
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=53.03 E-value=4e+02 Score=30.49 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=37.5
Q ss_pred hcccChHHHHHHHHHHHHHHHHhCCC-CCCCc-------hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1037 LGEEYPEVLGSILGALKAIVNVIGMT-KMTPP-------IKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1037 L~De~pEVl~siL~AL~aIa~vlG~~-~lsp~-------l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
|.|+++.|.+.+|.++..++..+=.. ..++. +..+--.|+.++.+.++.||-+|+.++..+..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 34556666666666666665542000 00111 12344455556788899999999999999866
No 259
>KOG2213|consensus
Probab=52.25 E-value=1.9e+02 Score=35.65 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=72.7
Q ss_pred ccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTI 972 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~L 972 (1359)
+|++.+....+-. |+....-.++.+|..++.-|..-...++++.+...++..+++.+--.|++-+.|. ..+++.++.+
T Consensus 100 ~l~qLLnk~sl~~-Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~l 178 (460)
T KOG2213|consen 100 VLVQLLNKASLTG-LFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASL 178 (460)
T ss_pred HHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4444444443322 2222222589999999999998888899999988888888898888888876665 4555445444
Q ss_pred HhhcccccccchHhHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHh
Q psy10461 973 VNQLGKRVKPYLPQICGTILWRLN-----NKSAKVRQQAADLISRIAVVM 1017 (1359)
Q Consensus 973 ae~Lg~~ikPyl~qILpiIl~LL~-----Des~~VR~aAAe~Is~LA~vl 1017 (1359)
-..-+..-..-+..|...+..+.+ -.++.+=....+|+..-++..
T Consensus 179 k~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfF 228 (460)
T KOG2213|consen 179 KSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFF 228 (460)
T ss_pred hcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhh
Confidence 332222222334455555444332 134444444455544444444
No 260
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=51.54 E-value=64 Score=33.49 Aligned_cols=69 Identities=20% Similarity=0.118 Sum_probs=46.0
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH----HhHHHHHHHH-Hhcc------ChHHHHHHHHHHHHH
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI----YAVTPLLEDA-LMDR------DLVHRQTACATIKHM 1250 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL----~~VlPlLeda-L~D~------D~~VRqtA~saIk~L 1250 (1359)
.|+-+|++-|++..++|+..+++.|.+++..-.+.+...+ +.|..+.+-- .-|+ ...||..|.+++..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998887554433322 3333322210 1122 357888777776654
No 261
>KOG2122|consensus
Probab=51.22 E-value=1e+03 Score=34.56 Aligned_cols=311 Identities=15% Similarity=0.208 Sum_probs=142.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccccc--ccchHhHHHHH
Q psy10461 914 DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRV--KPYLPQICGTI 991 (1359)
Q Consensus 914 Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~i--kPyl~qILpiI 991 (1359)
|++-..|+-|-.+|..|+..-+.+...-+ .+. .|++|.. . ...|......+..-+.-+ -++-|+|+..+
T Consensus 249 ~~~kear~~A~aALHNIVhSqPD~kr~RR----E~k-vL~lLeQ-I---raYC~~~~~~lqar~~~~apa~~~H~lcaA~ 319 (2195)
T KOG2122|consen 249 DEDKEARKRASAALHNIVHSQPDEKRGRR----EKK-VLHLLEQ-I---RAYCETCWTWLQARGPAIAPASDEHQLCAAL 319 (2195)
T ss_pred hhhHHHHHHHHHHHHHHhhcCcchhhhHH----HHH-HHHHHHH-H---HHHHHHHHHHHHhcCCCCCCcccchhhHHHH
Confidence 55778999999999999986665533221 111 1222210 0 122223334444444433 36677776655
Q ss_pred HHhhcC-CCHHHHHHHHHH--HHHHHHHhhh-h---------hHHhHHHHHHHHHHHHh--cccChHHHH-HHHHHHHHH
Q psy10461 992 LWRLNN-KSAKVRQQAADL--ISRIAVVMKT-C---------QEEKLMGHLGVVLYEYL--GEEYPEVLG-SILGALKAI 1055 (1359)
Q Consensus 992 l~LL~D-es~~VR~aAAe~--Is~LA~vl~~-~---------~e~~lL~~Ll~iLle~L--~De~pEVl~-siL~AL~aI 1055 (1359)
-.+++- =+..-|.+.+++ |-.|++.+.- | .....|..+.-.-++.| ||+...... +--+.+.++
T Consensus 320 ~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeav 399 (2195)
T KOG2122|consen 320 CTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAV 399 (2195)
T ss_pred HHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHH
Confidence 555442 233445555532 3333443321 1 01234555555555555 444322111 222344555
Q ss_pred HHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHH------HhhCCCchhhHHHHHHHHHHHHHHHhh----H
Q psy10461 1056 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRI------ADRGPEYVSAREWMRICFELLELLKAH----K 1125 (1359)
Q Consensus 1056 a~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~I------A~~g~e~v~~kE~mrIc~eLLelLkD~----~ 1125 (1359)
+..+... -.+++.-+..+|+|-+|+.=.+.-..|..+ +...-..-.+..+--++..|-. |..| +
T Consensus 400 VAQL~s~-----peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWN-LSAHcteNK 473 (2195)
T KOG2122|consen 400 VAQLISA-----PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWN-LSAHCTENK 473 (2195)
T ss_pred HHHHhcC-----hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhh-hhhcccccc
Confidence 5444322 446777777788888886432222222222 1110000000001111111111 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHhCch---hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc-------ccHHHHHHhcCCCC
Q psy10461 1126 KAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-------TVLPALMNEYRVPE 1195 (1359)
Q Consensus 1126 ~sVR~AAv~tLg~IAk~~Gpe---dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~-------~VLPaLLnlLkDpE 1195 (1359)
..| .+.-.+|+.|+..+..+ ..+. |+++ -..-+|.. ..+--+|.++ .+|..||..|+...
T Consensus 474 A~i-CaVDGALaFLVg~LSY~~qs~tLa-IIEs---aGGILRNV-----SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S 543 (2195)
T KOG2122|consen 474 AEI-CAVDGALAFLVGTLSYEGQSNTLA-IIES---AGGILRNV-----SSLIATCEDYRQILRRHNCLQTLLQHLKSHS 543 (2195)
T ss_pred hhh-hcccchHHHHHhhccccCCcchhh-hhhc---CccHHHHH-----HhHhhccchHHHHHHHhhHHHHHHHHhhhcc
Confidence 222 22233444444433322 1111 1111 00011211 2222344444 68999999999998
Q ss_pred chhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1196 LNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1196 ~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
.-|-.|.|.+|-.+.-.... -++|| .--+|+|..++-......-..++++|+.+
T Consensus 544 LTiVSNaCGTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNL 599 (2195)
T KOG2122|consen 544 LTIVSNACGTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNL 599 (2195)
T ss_pred eEEeecchhhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 88888888887544333222 23344 35678888888666554444444455543
No 262
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=50.79 E-value=6e+02 Score=31.88 Aligned_cols=289 Identities=15% Similarity=0.156 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchh-H-HHHHHHHHHHHhhcccccccchHhHHHHHHH
Q psy10461 916 NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE-D-VVMLNGFGTIVNQLGKRVKPYLPQICGTILW 993 (1359)
Q Consensus 916 s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~e-D-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~ 993 (1359)
.-..|..|++.|...+.....+.+.. +-...=.++....+. . +++++.+-.++..-......-=......|..
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~ 77 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISD 77 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhc
Confidence 34678888998888888776642221 122111223222222 2 6777777777776654221111233333344
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhhhhhH--HhHHHHHHHHHHHHh-------cc------c---C-hHHHHHHHHHHHH
Q psy10461 994 RLNNKSAKVRQQAADLISRIAVVMKTCQE--EKLMGHLGVVLYEYL-------GE------E---Y-PEVLGSILGALKA 1054 (1359)
Q Consensus 994 LL~Des~~VR~aAAe~Is~LA~vl~~~~e--~~lL~~Ll~iLle~L-------~D------e---~-pEVl~siL~AL~a 1054 (1359)
--.+++-.-|.+|...|++=+..+..+.. ..+|..-+..+++.. +. . . .....+....|.-
T Consensus 78 ~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 157 (464)
T PF11864_consen 78 PSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQF 157 (464)
T ss_pred CCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHH
Confidence 44555667777777777766665542211 122222222222110 00 0 0 0011223344555
Q ss_pred HHHHhCCC--CCC-CchhchHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhh--HHHH
Q psy10461 1055 IVNVIGMT--KMT-PPIKDLLPRLTPILKNR-HEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH--KKAI 1128 (1359)
Q Consensus 1055 Ia~vlG~~--~ls-p~l~~lLP~L~~LLkDr-~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~--~~sV 1128 (1359)
+.+++... .+. ..+..++..+..+++.. +...-++|+..|..+...|. +|...+..+ +..|-.. ..+.
T Consensus 158 l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~--iP~~sl~~~----i~vLCsi~~~~~l 231 (464)
T PF11864_consen 158 LVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD--IPSESLSPC----IEVLCSIVNSVSL 231 (464)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc--CChHHHHHH----HHHHhhHhccccc
Confidence 55554322 111 23445666666666543 33445788888888877553 333322221 2222111 1155
Q ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHhhhcccc----hhHH--HHHHHHHHHhhhc----------CccccHHHHHHhcC
Q psy10461 1129 RRATVNTFGYIAKAIGPHDVLATLLNNLKVQER----QNRV--CTTVAIAIVAETC----------SPFTVLPALMNEYR 1192 (1359)
Q Consensus 1129 R~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~----~VRv--~ta~AIg~LAea~----------gP~~VLPaLLnlLk 1192 (1359)
...+-+++..|++.--.+..+..|...|+.++. ..++ -+...++.+.-.. ++..|+|.|.+.++
T Consensus 232 ~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 232 CKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK 311 (464)
T ss_pred chhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHh
Confidence 666777777777543334555666666642222 1222 2233333332222 22359999999999
Q ss_pred CCCchhHHHHHHHHHHHH-HHhhh
Q psy10461 1193 VPELNVQNGVLKALSFLF-EYIGE 1215 (1359)
Q Consensus 1193 DpE~nVR~~VlkaLs~Ia-e~IG~ 1215 (1359)
-....|=..|+..+..++ ..++.
T Consensus 312 ~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 312 SNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred CCCCeehHHHHHHHHHHHhHhhhh
Confidence 877778888888887777 55554
No 263
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=48.74 E-value=1.7e+02 Score=32.20 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhH---HhHHHHHHHHHHHHhcc
Q psy10461 963 VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQE---EKLMGHLGVVLYEYLGE 1039 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e---~~lL~~Ll~iLle~L~D 1039 (1359)
..+..++.++++.+...+ .+..++..+..-+.| +..||.-+...+.+++..-..... +.++..+-..|-..+++
T Consensus 45 K~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~ 121 (169)
T PF08623_consen 45 KAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKE 121 (169)
T ss_dssp HHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 577788888888776655 378889999999999 999999999999999875543221 34444454555555544
Q ss_pred c--------ChHHHHHHHHHHHHHHHHhC
Q psy10461 1040 E--------YPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 1040 e--------~pEVl~siL~AL~aIa~vlG 1060 (1359)
. ..|..++++.+...+...+.
T Consensus 122 ~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 122 NAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3 34667788888888866663
No 264
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=48.58 E-value=48 Score=34.30 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=45.8
Q ss_pred cccHHHHHHhcCC-CCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1181 FTVLPALMNEYRV-PELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1181 ~~VLPaLLnlLkD-pE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
+.+|..|+++|.. .++.+--.+|.-|+.++.+.. .++..+ ..+...+..++.++|..||.-|..++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p-~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP-NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G-GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHCh-hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3677777777743 345555667777777777763 345555 34566777788899999998887777665
No 265
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=48.31 E-value=2.3e+02 Score=30.05 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=64.4
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCc
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD-~~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
.++.+..|..-++++++.|+..++.++..++..|+..|... .--+.+.+|..++.+ .+..|+.-+...+...+..|..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 57888888888889999999999999999999888644321 001233445566666 5778999999999998888874
Q ss_pred hh---HHHHHHHhhhc
Q psy10461 1146 HD---VLATLLNNLKV 1158 (1359)
Q Consensus 1146 ed---Vlp~LL~~Lk~ 1158 (1359)
+. .+..+-+.|+.
T Consensus 115 ~~~l~~i~~~y~~L~~ 130 (144)
T cd03568 115 DPSLSLMSDLYKKLKN 130 (144)
T ss_pred CcccHHHHHHHHHHHH
Confidence 32 33444444443
No 266
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=47.58 E-value=5.2e+02 Score=30.22 Aligned_cols=118 Identities=12% Similarity=0.094 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccc-hhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcCCCCchhHHHH
Q psy10461 1127 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGV 1202 (1359)
Q Consensus 1127 sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~-~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLkDpE~nVR~~V 1202 (1359)
.++ .+++.|..+|+.-|-..+. .++..+....+ ...-=....+..|.+.+.|. .++-.|+.+|...-+.+|..+
T Consensus 131 ~~~-~~A~~La~~a~~~~~~~La-~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 131 ECI-EIAEALAQVAEAQGLPNLA-RILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHH-HHHHHHHHHHHhCCCccHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 444 4557888888765554433 33333322211 11111234557888999875 788999999999999999999
Q ss_pred HHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1203 LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1203 lkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
+.-|..++..+.-. +.....++--|.++++.+ .+.+ |..+++.+
T Consensus 209 L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~--~~~e-AL~VLd~~ 252 (262)
T PF14225_consen 209 LQILKVLLPHVDMR-SPHGADLISPLLRLLQTD--LWME-ALEVLDEI 252 (262)
T ss_pred HHHHHHHhccccCC-CCcchHHHHHHHHHhCCc--cHHH-HHHHHHHH
Confidence 99999999888642 222333333334455332 2333 55566554
No 267
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=46.52 E-value=33 Score=37.47 Aligned_cols=89 Identities=17% Similarity=0.029 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy10461 1133 VNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 1212 (1359)
Q Consensus 1133 v~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~ 1212 (1359)
.+.++.+.... ....+.+..-+++++.++|.++.+++...........++..+..++.|++..||.+|.++|..++..
T Consensus 108 ~~~~~~~~~~~--~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 108 SKLLGPLLKKH--PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHHH--GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhh--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 44455554332 3455556666677777777775555444333322236788888889999999999998888776544
Q ss_pred hhhhchhhHHhHHHHHHH
Q psy10461 1213 IGEMGKDYIYAVTPLLED 1230 (1359)
Q Consensus 1213 IG~~~kdYL~~VlPlLed 1230 (1359)
-. ..+.+.|..
T Consensus 186 ~~-------~~v~~~l~~ 196 (213)
T PF08713_consen 186 DP-------DEVLEFLQK 196 (213)
T ss_dssp -H-------HHHHHHHHH
T ss_pred CH-------HHHHHHHHH
Confidence 33 355555544
No 268
>KOG3961|consensus
Probab=45.41 E-value=80 Score=35.90 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=77.1
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchh
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED 1261 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Ed 1261 (1359)
..||.|..-|.+-+---|+-+-.-+..+....|+..-..++++++-|..+|..+|..+...+..+|..|.......| .
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG--~ 191 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG--A 191 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc--h
Confidence 57888888887666556776666677777777776666777877788899999998888777788888754433344 3
Q ss_pred HHhhhHHhhhc--ccccCC-------------hHHHHHHHHHHHHHHHhhchHHHH--HhHhh
Q psy10461 1262 ALTHLLNYVWP--NIFETS-------------PHLVQAFMDAVEGLRVALGPVRIL--QYVLQ 1307 (1359)
Q Consensus 1262 aliHlLnlvlP--nI~Ets-------------p~Vi~~ileaLeaLr~aLG~~~ll--~~vLp 1307 (1359)
+++.+--.++| |++..+ .++=.-+-+.|+.+-.+=|+.-|+ .|++|
T Consensus 192 aLVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAfINIKY~vP 254 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAFINIKYMVP 254 (262)
T ss_pred hhhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCccceeeEeeccC
Confidence 44544334444 222211 112222455666666666765553 34544
No 269
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=45.40 E-value=1.3e+02 Score=32.88 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=64.9
Q ss_pred hHHHHHHHhc-CCCHHHHHHH-HHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhH
Q psy10461 1071 LLPRLTPILK-NRHEKVQENC-IDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 1148 (1359)
Q Consensus 1071 lLP~L~~LLk-Dr~~rVR~AA-ielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedV 1148 (1359)
.++.+...+. -.+|.+.... ...++.+..... + ....+..|+.+.+.-+|++++..+-.....-..+.+
T Consensus 86 ~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~------~---~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~ 156 (213)
T PF08713_consen 86 DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP------E---ALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDEL 156 (213)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG------G---HHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHH
T ss_pred HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH------H---HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3444444443 4567665444 555555533111 0 122335788888888888888776555544222455
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHh
Q psy10461 1149 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE 1190 (1359)
Q Consensus 1149 lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnl 1190 (1359)
+..+..++.+.++.+|.+++-++..++.. .|..+.+.|...
T Consensus 157 l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l~~~ 197 (213)
T PF08713_consen 157 LEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFLQKN 197 (213)
T ss_dssp HHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHHHS
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHHHC
Confidence 55556667777888999888888887765 455566666653
No 270
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=44.81 E-value=7e+02 Score=30.90 Aligned_cols=95 Identities=13% Similarity=0.212 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcccc-cccch-HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc-cc
Q psy10461 964 VMLNGFGTIVNQLGKR-VKPYL-PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG-EE 1040 (1359)
Q Consensus 964 v~lkaLg~Lae~Lg~~-ikPyl-~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~-De 1040 (1359)
.+...|-.++...... .+.|+ ++.+--|+.++.-+++.-|+....++-++-.-...+. .-....+..+|++.+- ..
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r-~~Ir~~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLR-SFIRKSINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTH-HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCcc
Confidence 4555666666654421 23344 4778888899999999999999999999765443221 2334445556666653 22
Q ss_pred ChHHHHHHHHHHHHHHHHh
Q psy10461 1041 YPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 1041 ~pEVl~siL~AL~aIa~vl 1059 (1359)
.+-.+..++.-++.+.+.+
T Consensus 188 ~~~gI~elLeil~sii~gf 206 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGF 206 (409)
T ss_dssp --STHHHHHHHHHHHHTT-
T ss_pred cccCHHHHHHHHHHHHhcc
Confidence 3334455666666666543
No 271
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=43.79 E-value=1.7e+02 Score=39.31 Aligned_cols=78 Identities=15% Similarity=0.317 Sum_probs=60.2
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhh--chhhHHhH
Q psy10461 1150 ATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM--GKDYIYAV 1224 (1359)
Q Consensus 1150 p~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~--~kdYL~~V 1224 (1359)
..+++.+-..++++-+..+.|++.+|..--|. +++|.|++.|.+.+.++-.+++.++-.|++..+.. +......+
T Consensus 88 ~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ei 167 (947)
T COG5657 88 DELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFLEI 167 (947)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 34666666677777777789999999988775 99999999999988888889999999999988864 33333445
Q ss_pred HHH
Q psy10461 1225 TPL 1227 (1359)
Q Consensus 1225 lPl 1227 (1359)
.|.
T Consensus 168 ~p~ 170 (947)
T COG5657 168 APV 170 (947)
T ss_pred HHH
Confidence 553
No 272
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.41 E-value=3.5e+02 Score=27.98 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=58.2
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHh
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKA---HKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD---~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
.++.+..|..-++++++.|+..++.++..+...|+.-|... .-...+.++..++.. ....||.-+.+.+..-+..|
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 56788888888999999999999999999999988644322 001122344555554 36679999999999999888
Q ss_pred Cch
Q psy10461 1144 GPH 1146 (1359)
Q Consensus 1144 Gpe 1146 (1359)
+.+
T Consensus 115 ~~~ 117 (133)
T cd03561 115 GGH 117 (133)
T ss_pred cCC
Confidence 753
No 273
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=43.40 E-value=5.5e+02 Score=29.24 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=102.6
Q ss_pred HhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHH
Q psy10461 1036 YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF 1115 (1359)
Q Consensus 1036 ~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~ 1115 (1359)
.-++..|+.....+.+|..++..-. .....++..+..+.+..+..++.-+..++..+-......++... .++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~--~~L~ 81 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQ--PLLL 81 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHH--HHHH
Confidence 3455678888888888888776431 11335666666677777777777788888887765543332211 1111
Q ss_pred H-HHHH---H--HhhHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhh-hcccchhHHHHHHHHHHHhh--hcCccccH
Q psy10461 1116 E-LLEL---L--KAHKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNL-KVQERQNRVCTTVAIAIVAE--TCSPFTVL 1184 (1359)
Q Consensus 1116 e-LLel---L--kD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~L-k~qe~~VRv~ta~AIg~LAe--a~gP~~VL 1184 (1359)
. .+.. . ++..+.+..+...++-.|++..+. .++++.|-..+ ...+..++..+..++..+++ +++.+...
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 0 0111 1 223555556656666777766433 25566555556 33333334443444444442 22333555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhhhh---chh---hHHhHHHHHHHHHhccC
Q psy10461 1185 PALMNEYRVPELNVQNGVLKALSFLFEYIGEM---GKD---YIYAVTPLLEDALMDRD 1236 (1359)
Q Consensus 1185 PaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~---~kd---YL~~VlPlLedaL~D~D 1236 (1359)
-.+...+ ....|..++++|..++..++.. ..+ ....++..+=+.....+
T Consensus 162 ~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 162 KVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 5555555 3445778888887777666432 222 22455665555554444
No 274
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=42.04 E-value=84 Score=33.36 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhh---chhhHHhH
Q psy10461 1162 QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM---GKDYIYAV 1224 (1359)
Q Consensus 1162 ~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~---~kdYL~~V 1224 (1359)
++.-++.+|+-. ..|+ +++.+.++..|++++.|.|.+++.-+..+++.+-.. ...|+.-+
T Consensus 23 Si~kaa~fAlk~--~~~~-edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l 85 (139)
T PF12243_consen 23 SIQKAAQFALKN--RDME-EDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSML 85 (139)
T ss_pred HHHHHHHHHHHc--cccH-HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHH
Confidence 344444555544 2232 258999999999999999999999998888877432 34566433
No 275
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=41.66 E-value=3.1e+02 Score=28.64 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=57.4
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHhh--HHH--HHHHHHHHHHHHHHH
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKAH--KKA--IRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD~--~~s--VR~AAv~tLg~IAk~ 1142 (1359)
.++.+..|..-+++.++.|+..|+.++..+...|+..|... .-.+.+..+..++++. ... ||+-+.+.+..-+..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 56788888888899999999999999999999886543321 0011334445555543 223 999999999999999
Q ss_pred hCch
Q psy10461 1143 IGPH 1146 (1359)
Q Consensus 1143 ~Gpe 1146 (1359)
|+.+
T Consensus 120 f~~~ 123 (140)
T PF00790_consen 120 FKSD 123 (140)
T ss_dssp TTTS
T ss_pred HCCC
Confidence 9543
No 276
>KOG2973|consensus
Probab=41.46 E-value=81 Score=37.62 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccch
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYL 984 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl 984 (1359)
+..++.++++.++.||+.|++.+-.+... +..+-..-...++..+..++.+... .+-++.+++.+....+-+-+-.-
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIA 1014 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA 1014 (1359)
. ++.++.+.+.|+..-.-+..|-++++++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLS 110 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhc
No 277
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=41.23 E-value=3.5e+02 Score=28.69 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=59.7
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKA------HKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD------~~~sVR~AAv~tLg~IA 1140 (1359)
.++-+..|..-++++++.|+.-++.++..+...|+..|... .--+...+++.++.. ....||.-+...+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45677777778889999999999999999999887644322 001122344555532 35678888888888888
Q ss_pred HHhCchhHHHHHHHhhh
Q psy10461 1141 KAIGPHDVLATLLNNLK 1157 (1359)
Q Consensus 1141 k~~GpedVlp~LL~~Lk 1157 (1359)
..|+.+.-....-+.|+
T Consensus 116 ~~f~~~p~~~~~Y~~Lk 132 (139)
T cd03567 116 LELPHEPKIKEAYDMLK 132 (139)
T ss_pred HHhcccchHHHHHHHHH
Confidence 88764333333344443
No 278
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.16 E-value=85 Score=32.53 Aligned_cols=66 Identities=12% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccccch--HhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy10461 947 LIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKPYL--PQICGTILWRLNNKSAKVRQQAADLISRI 1013 (1359)
Q Consensus 947 Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikPyl--~qILpiIl~LL~Des~~VR~aAAe~Is~L 1013 (1359)
++..|+-++..+.+.. .++|.-+|.++...+.- +..+ -..-..|..+++++++.||.+|..++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4555555554333222 56666688888777542 1122 22346788999999999999999988776
No 279
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=41.15 E-value=1.9e+02 Score=33.82 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCC-----ch--hHHhhhHH
Q psy10461 1198 VQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG-----CE--DALTHLLN 1268 (1359)
Q Consensus 1198 VR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG-----~E--daliHlLn 1268 (1359)
+|...+.-++.+.+.-....-+|+ ..|+|+..+.++-.+...|..|.-++..|-..-.|+. .| .++.+.|+
T Consensus 112 LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~ 191 (262)
T PF04078_consen 112 LRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLN 191 (262)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHH
Confidence 555444444444443333333444 4677766666655555566555555555432222221 11 23334444
Q ss_pred hhhc-ccccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhhhc
Q psy10461 1269 YVWP-NIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF 1310 (1359)
Q Consensus 1269 lvlP-nI~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpgLf 1310 (1359)
.+.- ...+.++-+...++.||-.+...--.-..++..+|..+
T Consensus 192 ~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~L 234 (262)
T PF04078_consen 192 KMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQL 234 (262)
T ss_dssp HHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGG
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHH
Confidence 4433 23346777888899999766554433444555555443
No 280
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=41.05 E-value=1.8e+02 Score=32.56 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=42.0
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1188 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1188 LnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
-+.|.-.-..+-..|+..++.+|+.+|..+..++..++-.|.++-.+.+..+|..+-.++.+
T Consensus 6 e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lga 67 (198)
T PF08161_consen 6 ESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGA 67 (198)
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 33443333445667888889999999987777776777777777777776777655544443
No 281
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=40.00 E-value=31 Score=29.08 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=24.6
Q ss_pred cChHhHHHHHhhhcCCCCHHHHHHHHHHH
Q psy10461 899 VGASEIINRVVDDLKDENEQYRKMVMESI 927 (1359)
Q Consensus 899 lg~~eiI~~Ll~~LKDes~~VR~~Aa~~L 927 (1359)
++.+.+...+...+.|+++.||..|++.|
T Consensus 14 l~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 14 LDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45567888889999999999999998753
No 282
>KOG0889|consensus
Probab=39.50 E-value=2e+03 Score=34.58 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=114.5
Q ss_pred cChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHH----hcCccchhhhHHHHHHHHHHHhhccCch-hHH----HHHHHH
Q psy10461 899 VGASEIINRVVDDLKDENEQYRKMVMESIEKTMS----NLGAADIDSRLEEQLIDGILYAFQEQTT-EDV----VMLNGF 969 (1359)
Q Consensus 899 lg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~----~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD~----v~lkaL 969 (1359)
++..-.++.|+..+++++..+|.+...++..+-. -+|.... ....++..+|+..+-...- ..| ..+.++
T Consensus 980 lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~--~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI 1057 (3550)
T KOG0889|consen 980 LDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPER--AFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGI 1057 (3550)
T ss_pred cCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcch--hhccchHHHHHHHHHHHhccHhHHHHcCCCcee
Confidence 4445669999999999999999999999987754 3443211 1122344444443322111 112 223446
Q ss_pred HHHHhhcccc-cccchHhHHHHHHHhhcCCCHHHHHHH--------HHHHHHHHHHhhhhhH-HhHHHHHHHHHHHHhcc
Q psy10461 970 GTIVNQLGKR-VKPYLPQICGTILWRLNNKSAKVRQQA--------ADLISRIAVVMKTCQE-EKLMGHLGVVLYEYLGE 1039 (1359)
Q Consensus 970 g~Lae~Lg~~-ikPyl~qILpiIl~LL~Des~~VR~aA--------Ae~Is~LA~vl~~~~e-~~lL~~Ll~iLle~L~D 1039 (1359)
+.+++.++.. +..+...++..+...+.|....+-... .+.+..+...+....+ .....+++.++...|-+
T Consensus 1058 ~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n 1137 (3550)
T KOG0889|consen 1058 KCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN 1137 (3550)
T ss_pred eeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 6666666632 345666777777777777544444422 2222222221111111 23556667777777877
Q ss_pred cChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHh---------cCCCHHHHHHHHHHHHHHHhhCCCchhh
Q psy10461 1040 EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL---------KNRHEKVQENCIDLVGRIADRGPEYVSA 1107 (1359)
Q Consensus 1040 e~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL---------kDr~~rVR~AAielIg~IA~~g~e~v~~ 1107 (1359)
-++.|+..+...|..+.+..|.. ..+++-.+.+++ +...--++-..++.+.-....|++.++.
T Consensus 1138 pN~~VR~~~~~~L~~i~~~s~~~-----v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~ 1209 (3550)
T KOG0889|consen 1138 PNSDVREFSQKLLRLISELSGKS-----VVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDF 1209 (3550)
T ss_pred CchHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCc
Confidence 78889999999999998887533 445555555533 1222233444445555555566666554
No 283
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=38.88 E-value=4.7e+02 Score=29.97 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=32.9
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccchHhHHHHHHHhhcC
Q psy10461 947 LIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNN 997 (1359)
Q Consensus 947 Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~D 997 (1359)
++..++..+.+....+..+...++.++..++.+-..++..|+..+...++.
T Consensus 8 v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~ 58 (223)
T PF14675_consen 8 VYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRS 58 (223)
T ss_dssp HHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 455566666655555578888888888888887777777777777666643
No 284
>PF05536 Neurochondrin: Neurochondrin
Probab=38.63 E-value=9.9e+02 Score=30.87 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=90.4
Q ss_pred CccccccChHhHHHHHhhhcCCCCH-HHHHHHHHHHHHHHH-hcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHH
Q psy10461 893 GKPARLVGASEIINRVVDDLKDENE-QYRKMVMESIEKTMS-NLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFG 970 (1359)
Q Consensus 893 ~~LA~klg~~eiI~~Ll~~LKDes~-~VR~~Aa~~L~~Ia~-~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg 970 (1359)
+++|..-.-...|+.|+..+...+. .+-..+.++|..|+. .-|+..+-. ...+..+...+.++...-+.++..+.
T Consensus 88 ~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~---~g~v~~L~ei~~~~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 88 PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE---SGAVPALCEIIPNQSFQMEIALNLLL 164 (543)
T ss_pred hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh---cCCHHHHHHHHHhCcchHHHHHHHHH
Confidence 3555554555668889988877777 888889999988883 122221111 01122222333333222245566666
Q ss_pred HHHhhcccc-c---ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-----hhHHhHHHHHHHHHHHHhcc-c
Q psy10461 971 TIVNQLGKR-V---KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKT-----CQEEKLMGHLGVVLYEYLGE-E 1040 (1359)
Q Consensus 971 ~Lae~Lg~~-i---kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~-----~~e~~lL~~Ll~iLle~L~D-e 1040 (1359)
.++...+.. . ...+..+++.|-.........-|-++++.++.+=..... ......+.++..-+..-|.. .
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 666665532 1 244566666666666655555566666665555332210 01123444444444444422 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCC
Q psy10461 1041 YPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 1041 ~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
.++-+..++.....+.+..|.+
T Consensus 245 ~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 245 TPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred CHHHHHHHHHHHHHHHHHhChH
Confidence 4555666777777777777754
No 285
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.86 E-value=1e+03 Score=30.84 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhh-chHHHHHhHhhhhccccccchhhHHH
Q psy10461 1244 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL-GPVRILQYVLQGLFHPARKVRDVYWK 1322 (1359)
Q Consensus 1244 ~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aL-G~~~ll~~vLpgLfhpA~kvrd~~WR 1322 (1359)
..+|+.+...... ...+.++++++.-+..-.++.|+.....+|..+.... .+..++.-...-+|+ +-|.|+-
T Consensus 453 ~t~i~aiPrcL~~---~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~----~~d~~~~ 525 (552)
T PF14222_consen 453 RTCIQAIPRCLPS---SIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR----FDDKYPS 525 (552)
T ss_pred HHHHHHccccCCC---CCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee----CcccCcc
Confidence 3455555533222 2345567777777777788899999999999998888 777777777777776 3377888
Q ss_pred HHHhhhhccc
Q psy10461 1323 IYNSLYIGGQ 1332 (1359)
Q Consensus 1323 vyn~~y~~~~ 1332 (1359)
.||.-|.++.
T Consensus 526 ~~~~~~l~~~ 535 (552)
T PF14222_consen 526 MYDGGYLGSG 535 (552)
T ss_pred chhhhccchH
Confidence 8777776553
No 286
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=37.77 E-value=41 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIA 1014 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA 1014 (1359)
.++.+..+++..+..++..|+.+|.+|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777888889999999999999986
No 287
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=37.75 E-value=2.7e+02 Score=29.74 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH---hCCCCCCCchhchHH
Q psy10461 997 NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV---IGMTKMTPPIKDLLP 1073 (1359)
Q Consensus 997 Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v---lG~~~lsp~l~~lLP 1073 (1359)
..++.||..|.=+++++-+.. .+.+-..+...+...+.+...|....++.++..+... +|...+. .+.+++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~--~eg~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA----REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL--SEGFLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC--TTTHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh--hhhHHH
Confidence 356678999888888883221 1233333333444444333333333333444443111 1111110 225777
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHh
Q psy10461 1074 RLTPILK--NRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1074 ~L~~LLk--Dr~~rVR~AAielIg~IA~ 1099 (1359)
.+.+++. .++..++.+++++|..-+.
T Consensus 90 ~l~~~~~~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 90 SLLPLASRKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp HHHHHHH-CTS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHc
Confidence 7777777 6777888888888877543
No 288
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=37.64 E-value=1.5e+02 Score=31.26 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=52.0
Q ss_pred CccccHHHHHHhcC-CCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHH-HHHHHhcc---ChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPL-LEDALMDR---DLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLk-DpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPl-LedaL~D~---D~~VRqtA~saIk~LA 1251 (1359)
||.+.+-+|.+-++ .+.++|+..++.-|..+.+.||..+...+ ..++.- |.+++.+. ...|+.-....|...+
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 56688999999887 46889999999999999999997554433 234443 55555432 3477776677777665
No 289
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=37.51 E-value=6.3e+02 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHhhhcCccccHH
Q psy10461 1161 RQNRVCTTVAIAIVAETCSPFTVLP 1185 (1359)
Q Consensus 1161 ~~VRv~ta~AIg~LAea~gP~~VLP 1185 (1359)
...|-.+-.++|..-.++||+.||.
T Consensus 55 f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 55 FSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred cchHHHHHHHHHHHHHHCCHHHHHH
Confidence 3456666677777778888874443
No 290
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=37.20 E-value=5.2e+02 Score=27.76 Aligned_cols=74 Identities=19% Similarity=-0.009 Sum_probs=51.3
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHhhh-cCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHH
Q psy10461 1150 ATLLNNLKVQERQNRVCTTVAIAIVAET-CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 1228 (1359)
Q Consensus 1150 p~LL~~Lk~qe~~VRv~ta~AIg~LAea-~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlL 1228 (1359)
+.+..-.++++..+|.++...+...... ..+..++..+-+++.|++..||.+|.++|..++.... ..|+..+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~-------~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP-------ERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH-------HHHHHHH
Confidence 3444445666666777666555544433 3455789989999999999999999999988887744 3566655
Q ss_pred HH
Q psy10461 1229 ED 1230 (1359)
Q Consensus 1229 ed 1230 (1359)
++
T Consensus 181 ~~ 182 (197)
T cd06561 181 EK 182 (197)
T ss_pred HH
Confidence 54
No 291
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=36.70 E-value=6.5e+02 Score=28.18 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=67.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh-hHHH-HHHHHHHHHHHHHHHhCchhHHHHHHHh
Q psy10461 1078 ILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKA-IRRATVNTFGYIAKAIGPHDVLATLLNN 1155 (1359)
Q Consensus 1078 LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD-~~~s-VR~AAv~tLg~IAk~~GpedVlp~LL~~ 1155 (1359)
+++...-..|..+++++...-.... ... ... +..++.+ ..+. |=..|...+|.+.. .+......+..-
T Consensus 54 Lw~~~~~E~r~~al~~l~~~~~~~~----~~~-~~~---~~~~l~~~~~Wd~vD~~~~~i~g~~~~--~~~~~~~~l~~W 123 (208)
T cd07064 54 LWQQPEREYQYVAIDLLRKYKKFLT----PED-LPL---LEELITTKSWWDTVDSLAKVVGGILLA--DYPEFEPVMDEW 123 (208)
T ss_pred HHcchHHHHHHHHHHHHHHHHhcCC----HHH-HHH---HHHHHcCCchHHHHHHHHHHHhHHHHh--CChhHHHHHHHH
Confidence 5566555778888877766433221 110 111 1223322 1222 22234444455433 233333444444
Q ss_pred hhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy10461 1156 LKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 1212 (1359)
Q Consensus 1156 Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~ 1212 (1359)
.++++-.+|.+++++.-...+...+..+...+..++.|++--||.+|-++|..+++.
T Consensus 124 ~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 124 STDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 455665666665554333344333446777788889999999999888888776655
No 292
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.41 E-value=1.1e+02 Score=31.91 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=32.0
Q ss_pred ChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q psy10461 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAA 937 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe 937 (1359)
.+.+++..|...|+|.++.|+..|++.|..++.. |++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~-G~~ 71 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK-GNS 71 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh-CCH
Confidence 3567899999999999999999999999999985 443
No 293
>KOG2005|consensus
Probab=36.30 E-value=1.7e+02 Score=38.15 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=92.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPY 983 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPy 983 (1359)
-+..|+..++|.++.+-+.|++.+.+++++.-..-.+ +|. .=++++||
T Consensus 49 dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmts-----------vpk---------------------PlKFLrph 96 (878)
T KOG2005|consen 49 DLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTS-----------VPK---------------------PLKFLRPH 96 (878)
T ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHHHhccccccc-----------CCc---------------------hhhhhccc
Confidence 3888999999999999999999999988865443110 000 00235666
Q ss_pred hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 984 l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
...+..+.... .++..++.+|++|+-||-.+....+ .|..=+.--..-+++|-.|-++...+.+....+.-+++.
T Consensus 97 y~~Lk~i~~~~---~~~n~Kk~laDIlSvLamt~se~~~--~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~ 171 (878)
T KOG2005|consen 97 YGVLKEIYESM---ADSNLKKWLADILSVLAMTMSERGE--HLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEA 171 (878)
T ss_pred hhHHHHHHHhc---cCchhHhHHHHHHHHHheeecccch--heeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccc
Confidence 66665555433 3466788899999999877753211 100000001122456666777766666655555433321
Q ss_pred CC-CchhchHHHHHHH-hcCCCHHHHHHHHHHHHHHHh--hCCCchhhHHHHHHHHH
Q psy10461 1064 MT-PPIKDLLPRLTPI-LKNRHEKVQENCIDLVGRIAD--RGPEYVSAREWMRICFE 1116 (1359)
Q Consensus 1064 ls-p~l~~lLP~L~~L-LkDr~~rVR~AAielIg~IA~--~g~e~v~~kE~mrIc~e 1116 (1359)
.+ ...-++...+++. +++.-+ ..|++++-.+.. ...+|++...+-|+|.-
T Consensus 172 ~~~~dl~~l~~~iV~f~mkHNAE---~eAiDlL~Eve~id~l~~~Vd~~n~~RvclY 225 (878)
T KOG2005|consen 172 PSKADLLDLVQEIVPFHMKHNAE---FEAIDLLMEVEGIDLLLDYVDEHNYQRVCLY 225 (878)
T ss_pred cchHHHHHHHHHHHHHHHhccch---hHHHHHHHHhhhHhHHHHHhhhhhHHHHHHH
Confidence 11 1122334444442 332211 234455544432 33445555555555543
No 294
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=35.64 E-value=20 Score=30.91 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhhcccccC
Q psy10461 150 DVNIEAQIRDIQNRKKDVSE 169 (1359)
Q Consensus 150 ~~~i~~~i~~~q~~~~~~~~ 169 (1359)
-++|++||.++|.||+.+.+
T Consensus 21 iedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 21 IEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988763
No 295
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=35.43 E-value=7.1e+02 Score=28.23 Aligned_cols=115 Identities=6% Similarity=0.142 Sum_probs=74.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHhCch-hHHHH--
Q psy10461 1077 PILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE--LLKAHKKAIRRATVNTFGYIAKAIGPH-DVLAT-- 1151 (1359)
Q Consensus 1077 ~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLe--lLkD~~~sVR~AAv~tLg~IAk~~Gpe-dVlp~-- 1151 (1359)
.-|...+.++|..+++.+...-.......+..+.++||..|.= |+. .+.-+++..++.|+.|...+... ..+..
T Consensus 7 k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWms-Dkpl~Q~~la~~la~l~~~~~~~~~~~~f~~ 85 (217)
T PF05997_consen 7 KKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMS-DKPLVQEELAEELASLIHSFPSEKAALLFLK 85 (217)
T ss_pred HHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 3445677889999999998865543333256668889887653 343 34567788888888888887765 22222
Q ss_pred -----H------HHhhhcccch--hHHHHHHHHHHHhhhcCccccHHHHHHhcC
Q psy10461 1152 -----L------LNNLKVQERQ--NRVCTTVAIAIVAETCSPFTVLPALMNEYR 1192 (1359)
Q Consensus 1152 -----L------L~~Lk~qe~~--VRv~ta~AIg~LAea~gP~~VLPaLLnlLk 1192 (1359)
+ ++.++.+... +|.....+|..+...--..+++..+++.+.
T Consensus 86 ~f~~tm~rEW~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~ 139 (217)
T PF05997_consen 86 AFWETMRREWDGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILS 139 (217)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 3334444443 688888888887765434456666666654
No 296
>KOG1999|consensus
Probab=35.42 E-value=2.5e+02 Score=38.04 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.0
Q ss_pred CCCCCCCCCC
Q psy10461 680 TPGHSSGWAE 689 (1359)
Q Consensus 680 ~~~~~~~w~~ 689 (1359)
||++++.|..
T Consensus 798 TP~r~~aW~~ 807 (1024)
T KOG1999|consen 798 TPARGRAWNP 807 (1024)
T ss_pred CCCCCCCcCC
Confidence 6777777765
No 297
>KOG0803|consensus
Probab=35.24 E-value=1.6e+03 Score=32.31 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhc
Q psy10461 991 ILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKD 1070 (1359)
Q Consensus 991 Il~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~ 1070 (1359)
|...+.-.+++.|..|...++.+............++....++...+.|.++.|+......+..+...++. .++|+++.
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk-~lsp~LK~ 124 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK-KLSPFLKS 124 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH-HhhHHHHh
Confidence 33344447889999998888877654431111123333444444555888999999888888888888764 47787777
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10461 1071 LLPRLTPILKNRHEKVQENCIDLVG 1095 (1359)
Q Consensus 1071 lLP~L~~LLkDr~~rVR~AAielIg 1095 (1359)
++|-...---|-.-.|=++|-+.+.
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~ 149 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFK 149 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHH
Confidence 7776655334544455444444443
No 298
>KOG2081|consensus
Probab=34.95 E-value=1.1e+03 Score=30.47 Aligned_cols=301 Identities=13% Similarity=0.155 Sum_probs=154.8
Q ss_pred HHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchh---H-HHHHHHHHHHHh--hccc-ccccchHhHHHHHHHhhcC
Q psy10461 925 ESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE---D-VVMLNGFGTIVN--QLGK-RVKPYLPQICGTILWRLNN 997 (1359)
Q Consensus 925 ~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~e---D-~v~lkaLg~Lae--~Lg~-~ikPyl~qILpiIl~LL~D 997 (1359)
.+...+...+++. ...++..+.-+++..... + ..++++|+.-.. .+.. .+- -...++..+...+++
T Consensus 138 ~Rr~e~~~~l~~~------~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~-a~~pLi~l~F~sl~~ 210 (559)
T KOG2081|consen 138 NRRHEFIDELAAQ------VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVL-ASFPLITLAFRSLSD 210 (559)
T ss_pred hhHHHHHHHHHHh------HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHH-hhhHHHHHHHHHccc
Confidence 4455566666554 225666666677654432 2 566677766555 2221 110 011334444455554
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhH---HhHH----HHHHHHHHHH-hcccChHHHHHHHHHHHHHHHHhCCCCCCCchh
Q psy10461 998 KSAKVRQQAADLISRIAVVMKTCQE---EKLM----GHLGVVLYEY-LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIK 1069 (1359)
Q Consensus 998 es~~VR~aAAe~Is~LA~vl~~~~e---~~lL----~~Ll~iLle~-L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~ 1069 (1359)
. ..=.+|.++++.+-........ -..+ ..+++..+.. ...++.|...+++.-|-.+.+..... ++...+
T Consensus 211 ~--~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~-i~~np~ 287 (559)
T KOG2081|consen 211 D--ELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVL-ISTNPE 287 (559)
T ss_pred c--hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHH-HhhCCC
Confidence 3 3447788888877654432111 0111 1122223322 34556677777767666666553211 111122
Q ss_pred chHHHHHHHh---cCCCHHHHHHHHHHHHHHHhh--CCCchhhHHHHH-HHHHHHHH-------------HH---hhHHH
Q psy10461 1070 DLLPRLTPIL---KNRHEKVQENCIDLVGRIADR--GPEYVSAREWMR-ICFELLEL-------------LK---AHKKA 1127 (1359)
Q Consensus 1070 ~lLP~L~~LL---kDr~~rVR~AAielIg~IA~~--g~e~v~~kE~mr-Ic~eLLel-------------Lk---D~~~s 1127 (1359)
..++.+--++ ....+.|-++....=-.+... ..++-....+.+ ....++.+ |. +.-+.
T Consensus 288 ~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~ 367 (559)
T KOG2081|consen 288 EFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFE 367 (559)
T ss_pred cchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHH
Confidence 5555553322 233344433332222222221 111100000111 11122222 21 23456
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHhhhc--ccchhHHHHHHHHHHHhhhcCcc--ccHHHHHHhcC-CCC-chhHHH
Q psy10461 1128 IRRATVNTFGYIAKAIGPHDVLATLLNNLKV--QERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYR-VPE-LNVQNG 1201 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~--qe~~VRv~ta~AIg~LAea~gP~--~VLPaLLnlLk-DpE-~nVR~~ 1201 (1359)
-|....+.+.-.+-.+|.++.+..+.-.++. +.+..-.++.+.+..++..+.|. +++|-++..+- -|+ .-+|-.
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~~~t 447 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPLRYT 447 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhHHHH
Confidence 8999999999999999998888877655554 23445666778888999999875 89998888763 233 226666
Q ss_pred HHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccC
Q psy10461 1202 VLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD 1236 (1359)
Q Consensus 1202 VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D 1236 (1359)
.+--++.+.+.+... ...+..|+..+...+++..
T Consensus 448 s~ll~g~~~ew~~~~-p~~le~v~~~~~~~~~~~~ 481 (559)
T KOG2081|consen 448 SILLLGEYSEWVEQH-PELLEPVLRYIRQGLQLKR 481 (559)
T ss_pred HHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhhhcc
Confidence 666667777766532 2344455555555554433
No 299
>KOG2005|consensus
Probab=34.81 E-value=9.1e+02 Score=32.03 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=55.2
Q ss_pred HHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc-ccHHHHHHhcCCCCchhHHHHHHHHHH
Q psy10461 1137 GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-TVLPALMNEYRVPELNVQNGVLKALSF 1208 (1359)
Q Consensus 1137 g~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~-~VLPaLLnlLkDpE~nVR~~VlkaLs~ 1208 (1359)
..+++-+|.+-++..+-..+.-.+..+|.++-.|+|.++-. .|. .|+-+|-+...|.+.+|-.+++-+++-
T Consensus 630 iAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvS-NPq~~vlDtLsk~shd~D~eva~naIfamGL 701 (878)
T KOG2005|consen 630 IAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS-NPQVNVLDTLSKFSHDGDLEVAMNAIFAMGL 701 (878)
T ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC-CCcchHHHHHHHhccCcchHHHHHHHHHhcc
Confidence 34566677776666665566667778999999999988743 354 899999999999999999888888754
No 300
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=34.38 E-value=1.3e+03 Score=30.85 Aligned_cols=113 Identities=19% Similarity=0.344 Sum_probs=56.1
Q ss_pred HHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc----ccchHh-HHH------H---HHHhhcCCCHHHHHH-HHHHH
Q psy10461 947 LIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV----KPYLPQ-ICG------T---ILWRLNNKSAKVRQQ-AADLI 1010 (1359)
Q Consensus 947 Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i----kPyl~q-ILp------i---Il~LL~Des~~VR~a-AAe~I 1010 (1359)
++.-++-.|+....+. ..++++|..+++.+|..+ .|+-++ |+. . ++....+++..+... .-+.+
T Consensus 215 i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~ 294 (727)
T PF12726_consen 215 IYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLL 294 (727)
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCccccchhhHHHH
Confidence 3444444555543222 788999999999998743 454443 222 1 122222223322222 12223
Q ss_pred HHHHHHhh---hhhHHhHHHHHHHHHHHHhcc-cChH-HHHHHHH-HHHHHHHHh
Q psy10461 1011 SRIAVVMK---TCQEEKLMGHLGVVLYEYLGE-EYPE-VLGSILG-ALKAIVNVI 1059 (1359)
Q Consensus 1011 s~LA~vl~---~~~e~~lL~~Ll~iLle~L~D-e~pE-Vl~siL~-AL~aIa~vl 1059 (1359)
+=+-+.+. .....+...+++..|++.+.. .+++ ....|+. ++..+...+
T Consensus 295 sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~~~~~~L~~~l 349 (727)
T PF12726_consen 295 SWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRFPDEARAACLRAGLDALLSTL 349 (727)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 33333332 122356777888888888743 4555 3334433 444444443
No 301
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.95 E-value=3.9e+02 Score=32.03 Aligned_cols=32 Identities=16% Similarity=0.420 Sum_probs=20.4
Q ss_pred cccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy10461 978 KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISR 1012 (1359)
Q Consensus 978 ~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~ 1012 (1359)
+.++-|++.+++.+ +...+.+.|++|.+++-.
T Consensus 193 KELq~YF~kvisal---~dEs~~~~r~aAl~sLr~ 224 (450)
T COG5095 193 KELQMYFDKVISAL---LDESDEQTRDAALESLRN 224 (450)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 33445777777665 444567888888777543
No 302
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=33.29 E-value=54 Score=25.89 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=24.6
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
..+|.|+.+++.++.+++..++++|..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999888999999999987764
No 303
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=33.00 E-value=8e+02 Score=28.12 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHH
Q psy10461 912 LKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGT 990 (1359)
Q Consensus 912 LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpi 990 (1359)
|+|+++.|-+.|+.+...+-. .++..+ ..+...+. |..+ ..+-..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~-------------~~~~~i---~~~~~~~~~W~~~------------------~~lK~~ 47 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYP-------------LVFRWI---CVNPSDEQLWESM------------------NELKDR 47 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHH-------------HHHHHH---S--HHHHHHHHHH------------------HHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHH-------------HHHHHH---cCCchHHHHHHHH------------------HHHHHH
Confidence 688999999999998887655 233333 11111111 3333 333444
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHh
Q psy10461 991 ILWRLNNKSAKVRQQAADLISRIAVVM 1017 (1359)
Q Consensus 991 Il~LL~Des~~VR~aAAe~Is~LA~vl 1017 (1359)
|+....+.++.||..|..++..+.-+.
T Consensus 48 Il~~~~~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 48 ILSLWDSENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp HHHGGGSSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 555667778888988888888876544
No 304
>KOG1837|consensus
Probab=32.79 E-value=2.3e+02 Score=40.19 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHhhhcC--cc---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccCh
Q psy10461 1163 NRVCTTVAIAIVAETCS--PF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 1237 (1359)
Q Consensus 1163 VRv~ta~AIg~LAea~g--P~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~ 1237 (1359)
.+.++...+..++..-+ +. .++.-+|.-.++..+++|..++.++..+.+.+|+.....+++.+|.|-.++.|.+.
T Consensus 1517 ~~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~ 1596 (1621)
T KOG1837|consen 1517 SDIVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDD 1596 (1621)
T ss_pred hhHHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHH
Confidence 45555555555443332 21 34444555567889999999999999999999987667779999999999999998
Q ss_pred HHHHHHHHHHHHH
Q psy10461 1238 VHRQTACATIKHM 1250 (1359)
Q Consensus 1238 ~VRqtA~saIk~L 1250 (1359)
.|...+...++.+
T Consensus 1597 ~Ve~~~q~li~q~ 1609 (1621)
T KOG1837|consen 1597 EVECLCQKLIRQL 1609 (1621)
T ss_pred HHHHHHHHHHHHH
Confidence 8876555565554
No 305
>KOG2842|consensus
Probab=32.60 E-value=1.1e+03 Score=29.48 Aligned_cols=303 Identities=17% Similarity=0.104 Sum_probs=0.0
Q ss_pred cCccchhhhHHHHHHHHHHHhhccCchhHHHHHHH--HHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy10461 934 LGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNG--FGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLIS 1011 (1359)
Q Consensus 934 LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lka--Lg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is 1011 (1359)
++.+.....|+..+++.+.-....+..+....+.. +...++-+..++-+-...+...++..++-+...--.-|+.+|+
T Consensus 49 l~~s~~~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g 128 (427)
T KOG2842|consen 49 LDESGTQEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIG 128 (427)
T ss_pred hcccccHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q ss_pred HHHHHhhhhhH-HhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHH
Q psy10461 1012 RIAVVMKTCQE-EKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENC 1090 (1359)
Q Consensus 1012 ~LA~vl~~~~e-~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AA 1090 (1359)
.++-.++..++ ++....+.+.+..-+-+. ++....|..|
T Consensus 129 ~~~vqlg~~q~~ee~~~t~~~~~~li~~d~----------------------------------------s~sv~~r~~c 168 (427)
T KOG2842|consen 129 LLCVQAGPGQEEEEWTKTLGPFLALILDDE----------------------------------------SASIKARSIC 168 (427)
T ss_pred HHHHhccCcchhhHHHhccchHHHHHhhcc----------------------------------------ccchHHHHHH
Q ss_pred HHHHHHHHhhCCCchhhHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHH
Q psy10461 1091 IDLVGRIADRGPEYVSAREWMRICFELLEL---LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCT 1167 (1359)
Q Consensus 1091 ielIg~IA~~g~e~v~~kE~mrIc~eLLel---LkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~t 1167 (1359)
+-.++.-.-.....+.+....-+|....-. |.+....|=.++.+..+.+... ..-.-+| -+|.
T Consensus 169 a~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~a~~L----------ti~~ 234 (427)
T KOG2842|consen 169 ATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCL----TAWSLLL----------TICP 234 (427)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHH----HHHHHHH----------HcCc
Q ss_pred HHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHH
Q psy10461 1168 TVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACAT 1246 (1359)
Q Consensus 1168 a~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~sa 1246 (1359)
......+.....|- +|.|+...+..++.++-..+-.|..+++..-..+.... .+++-+|.++.+|.+..+...+-.+
T Consensus 235 ~~~~~~~~~~~~p~--i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssKs~~kkdkR~ 312 (427)
T KOG2842|consen 235 EALSEQLDAALAPK--LPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSKSRAKKDRRV 312 (427)
T ss_pred cchhhHHHHHhccc--hHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhhhhHHHHHHH
Q ss_pred HHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHH------------HHHHHHHHHHhhchHH--------HHHhHh
Q psy10461 1247 IKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQA------------FMDAVEGLRVALGPVR--------ILQYVL 1306 (1359)
Q Consensus 1247 Ik~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~------------ileaLeaLr~aLG~~~--------ll~~vL 1306 (1359)
.++.- -.+.|.+. .+.+|++.-+ +...|..++.+||++. |+.+++
T Consensus 313 qr~~f---------r~vl~~ie------e~~~pe~sVRfG~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF 377 (427)
T KOG2842|consen 313 QRSVF---------RDVLQTIE------ERDIPEESVRIGQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVF 377 (427)
T ss_pred HHHHH---------HHHHHHHh------cccCchhheeecceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHH
Q ss_pred h
Q psy10461 1307 Q 1307 (1359)
Q Consensus 1307 p 1307 (1359)
.
T Consensus 378 ~ 378 (427)
T KOG2842|consen 378 G 378 (427)
T ss_pred h
No 306
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=31.74 E-value=1.1e+03 Score=29.13 Aligned_cols=212 Identities=19% Similarity=0.295 Sum_probs=109.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHH-HHHHHHHHHh-cccChH-HHHHHHHHHHHHHHHh-CCCCCCC
Q psy10461 991 ILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMG-HLGVVLYEYL-GEEYPE-VLGSILGALKAIVNVI-GMTKMTP 1066 (1359)
Q Consensus 991 Il~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~-~Ll~iLle~L-~De~pE-Vl~siL~AL~aIa~vl-G~~~lsp 1066 (1359)
|..++-+++..||.++-.++--+...-... ..++. ++-..+..+| ++...+ .+..++.....+.+.- |.+.+
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d~~~l--~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~-- 105 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISDEESL--QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI-- 105 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCHHHH--HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC--
Confidence 333334445999988887775554322110 11111 1111222334 222222 2334555555555552 33333
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---
Q psy10461 1067 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI--- 1143 (1359)
Q Consensus 1067 ~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~--- 1143 (1359)
...++.+|+.++.+...+.|..|++.+-.++-..++-+-.-.-+ ..++..+.|...++-.+.+.+|-.+-..-
T Consensus 106 -~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~---~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 106 -PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGI---RVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCH---HHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 35788899999999999999999999998876544322111001 11233344433335555555555444421
Q ss_pred ---CchhHHHHHHHhhhc-------ccchh-HHH-HHHHHHHHhhhc-------C-ccccHHHHHHhcCCCCchhHHHHH
Q psy10461 1144 ---GPHDVLATLLNNLKV-------QERQN-RVC-TTVAIAIVAETC-------S-PFTVLPALMNEYRVPELNVQNGVL 1203 (1359)
Q Consensus 1144 ---GpedVlp~LL~~Lk~-------qe~~V-Rv~-ta~AIg~LAea~-------g-P~~VLPaLLnlLkDpE~nVR~~Vl 1203 (1359)
.+..-+..++..+.. .+..+ |+. +..++..+-+.. . .+.-+..|+..|+.|.+.+|..++
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 111112223322221 11112 332 345565554443 1 247899999999999999999988
Q ss_pred HHHHHHH
Q psy10461 1204 KALSFLF 1210 (1359)
Q Consensus 1204 kaLs~Ia 1210 (1359)
..+-.++
T Consensus 262 dll~dll 268 (371)
T PF14664_consen 262 DLLFDLL 268 (371)
T ss_pred HHHHHHH
Confidence 7764443
No 307
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=31.62 E-value=8.2e+02 Score=31.80 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhh-CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy10461 1085 KVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1085 rVR~AAielIg~IA~~-g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
.|+-++++.++.+++. .++.....-...++.-+--+|.|.++.|+..|.++|+++|+.-
T Consensus 495 ~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 495 HVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred cchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 4899999999998873 3333332212223322334589999999999999999999863
No 308
>KOG3687|consensus
Probab=30.77 E-value=4.8e+02 Score=35.72 Aligned_cols=90 Identities=18% Similarity=0.386 Sum_probs=55.4
Q ss_pred HHHHHHHHH-HHHH-hhHHHHHHHHHHHHHHHHHHhCc---hhHHHHH-HHhhh----cccchhHHHHHHHHHHHhhhcC
Q psy10461 1110 WMRICFELL-ELLK-AHKKAIRRATVNTFGYIAKAIGP---HDVLATL-LNNLK----VQERQNRVCTTVAIAIVAETCS 1179 (1359)
Q Consensus 1110 ~mrIc~eLL-elLk-D~~~sVR~AAv~tLg~IAk~~Gp---edVlp~L-L~~Lk----~qe~~VRv~ta~AIg~LAea~g 1179 (1359)
|.+....++ ...+ +...+||....+.|..+-..... ++|+..+ |-.+. ..+-+||+.++.++..+|..|.
T Consensus 426 wiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~ 505 (1697)
T KOG3687|consen 426 WIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCH 505 (1697)
T ss_pred HHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcc
Confidence 666554443 2344 45667887777777766544322 3454433 11111 2234789999999999999997
Q ss_pred cc------ccHHHHHHhcCCCCchhH
Q psy10461 1180 PF------TVLPALMNEYRVPELNVQ 1199 (1359)
Q Consensus 1180 P~------~VLPaLLnlLkDpE~nVR 1199 (1359)
.+ +++-++++-.-.+++..-
T Consensus 506 t~~~~~lldi~EA~~~rs~s~~~~l~ 531 (1697)
T KOG3687|consen 506 THHFNSLLDIIEAVMARSLSPPPELE 531 (1697)
T ss_pred hhcchhHHHHHHHHHhcccCCCcchh
Confidence 54 677788887666666543
No 309
>KOG1222|consensus
Probab=30.65 E-value=9.2e+02 Score=30.81 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhheeec
Q psy10461 503 RHLLVKVIDRILYKLDDLVRPYVHKILVVIE 533 (1359)
Q Consensus 503 rh~~~k~~~r~~~~l~~~~~~~~~~il~~~~ 533 (1359)
.|+|||-+||-=+-|--+|-.|..|+-++.|
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e 336 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIFDE 336 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhhcc
Confidence 4789999999888888888888888877643
No 310
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.66 E-value=1.9e+02 Score=28.83 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=46.9
Q ss_pred cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHH---------hccChHHHHHHHHHHHH
Q psy10461 1181 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL---------MDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1181 ~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL---------~D~D~~VRqtA~saIk~ 1249 (1359)
.+++.+|..-++++.++|+..++..|..+.+.+|+.+..++..-. .+.+++ .+.+..||..+...+..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 367888999999999999999999999999999986665552111 111221 13356777766655544
No 311
>KOG2199|consensus
Probab=29.19 E-value=4.6e+02 Score=32.49 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=62.3
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHH-----HHHHHHHh-hHHHHHHHHHHHHHHHHH
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICF-----ELLELLKA-HKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~-----eLLelLkD-~~~sVR~AAv~tLg~IAk 1141 (1359)
.++-|..|...+.++.+-|...++.+++.++..|..-|-.. +|. +|.-++.+ .+..|++.....+...++
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~E----VsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLE----VSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHH----HhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999999999999887644221 333 34455553 366787777777777777
Q ss_pred HhCch---hHHHHHHHhhhc
Q psy10461 1142 AIGPH---DVLATLLNNLKV 1158 (1359)
Q Consensus 1142 ~~Gpe---dVlp~LL~~Lk~ 1158 (1359)
.|..+ .++..|..+|+.
T Consensus 119 e~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 119 EFKKDPSLSLISALYKKLKE 138 (462)
T ss_pred HhccCcchhHHHHHHHHHHH
Confidence 77654 456667666664
No 312
>KOG4199|consensus
Probab=29.13 E-value=1.2e+03 Score=28.83 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHHHHhh----------ch-HHHHHhHhhhhccc--cccchhhHHHHHHhhh
Q psy10461 1277 TSPHLVQAFMDAVEGLRVAL----------GP-VRILQYVLQGLFHP--ARKVRDVYWKIYNSLY 1328 (1359)
Q Consensus 1277 tsp~Vi~~ileaLeaLr~aL----------G~-~~ll~~vLpgLfhp--A~kvrd~~WRvyn~~y 1328 (1359)
++|.|+..++-+++-++.-. |. +..++.+=. || |---|..-|-+||.+-
T Consensus 342 ~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka---hP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 342 DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA---HPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHH
Confidence 78899988888887665421 22 222222221 33 2223677888987654
No 313
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=28.46 E-value=46 Score=43.15 Aligned_cols=126 Identities=29% Similarity=0.375 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHhhHHHhhhccCCCCChHHhhhcCCCCCeecCCCCCCCCCC-CccccccCCCCCCCCCCCcccccccccc
Q psy10461 328 LAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYIPIR-TPARKLTATPTPIAGTPTGFFIQQEDKT 406 (1359)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1359)
...|+++++...| +.-|.|+||+|+++ || .|.|-. +|..+.+-.-.. .-++++|..-..
T Consensus 409 ~kkm~~~~l~~~R-----dr~~ipvsd~e~e~-lp----------y~~~g~~s~E~~yl~~rr~----al~g~~p~rr~~ 468 (887)
T COG2609 409 VKKMTPDQLKEFR-----DRFGIPVSDAELEE-LP----------YYHFGEDSPEYKYLHARRA----ALGGYLPARRPK 468 (887)
T ss_pred hhcCCHHHHHHHH-----hhcCCCCchhhhhc-CC----------cCCCCCCcHHHHHHHHHHH----hcCCCCchhccc
Confidence 3478888875543 34599999999999 33 122211 222211110000 013333332211
Q ss_pred c-cccCCCCCCCCCCCChhhHHhHHHhccCCCCCCCCHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhcCCcch
Q psy10461 407 A-KYMDNQPKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPL 485 (1359)
Q Consensus 407 ~-~~~~~~~~~~~~~~~~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikng~~~~rk~~~r~~~~~~~~~g~~~~ 485 (1359)
. ....+|+ ..-|..+++...+ ++|-- +-=-++|.-|||=|+= -|.-.=-+-|-||.||-+-+
T Consensus 469 ~t~~l~vP~-----------l~~~~a~~~~~g~-~iSTt-mAfvr~l~~llkdk~i----g~riVpiipDearTfgmeg~ 531 (887)
T COG2609 469 FTPALPVPS-----------LSDFQALLKGQGE-EISTT-MAFVRILNELLKDKEI----GKRIVPIIPDEARTFGMEGL 531 (887)
T ss_pred CCCCccCCc-----------HHHHHHHHhccCc-cchhH-HHHHHHHHHHHhcccc----CCccccccCchhhhccchhh
Confidence 1 1122332 2346667765554 44432 3445788888884442 23334457899999999999
Q ss_pred hhhhh
Q psy10461 486 FNQIL 490 (1359)
Q Consensus 486 f~~~~ 490 (1359)
|+||=
T Consensus 532 f~q~G 536 (887)
T COG2609 532 FRQIG 536 (887)
T ss_pred hhhcc
Confidence 99973
No 314
>KOG1851|consensus
Probab=27.29 E-value=3.4e+02 Score=38.82 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=81.2
Q ss_pred ccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH---HHHHHHHHHH
Q psy10461 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED---VVMLNGFGTI 972 (1359)
Q Consensus 896 A~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD---~v~lkaLg~L 972 (1359)
.++....+|-..+...+.|+.-.||++|+.++.-+... +-....+ .-.+...--++..+.+. |.++-++|++
T Consensus 1562 ~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~-s~~~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~ 1636 (1710)
T KOG1851|consen 1562 SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQG-SKFQFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAI 1636 (1710)
T ss_pred ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhc-cccccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHH
Confidence 34555667777778889999999999999999988762 2211111 22333333334333333 7777889999
Q ss_pred HhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Q psy10461 973 VNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK 1018 (1359)
Q Consensus 973 ae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~ 1018 (1359)
+-.++-.+-..+.+.+..+..-.+|+ ..+++++-+.++.+-....
T Consensus 1637 VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1637 VLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred HHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence 99998777667777777777766665 7899999999888877665
No 315
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.74 E-value=2e+02 Score=27.80 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred ccHHHHHHhc-CCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHH
Q psy10461 1182 TVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATI 1247 (1359)
Q Consensus 1182 ~VLPaLLnlL-kDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saI 1247 (1359)
++|..|...+ +.+..+||..++.++..+.+..|...++=-..|+-.|..+..|.+..+-..|-..+
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4555666664 45778999999999999999888755543456777777777776644444344443
No 316
>KOG1048|consensus
Probab=26.53 E-value=6.1e+02 Score=33.77 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=66.7
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh------HHHHHHHHHHHHHHHH
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP------EVLGSILGALKAIVNV 1058 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p------EVl~siL~AL~aIa~v 1058 (1359)
+..+++|..++..++..|-.++|..|.+++-.... .+.+-...++-|+..|.+-.+ |++.++|..+..+...
T Consensus 565 ekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 565 EKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred ccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 45568999999999999999999999999865542 122223456667777744333 5677777777777522
Q ss_pred -h-CCCCCCCchhchHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q psy10461 1059 -I-GMTKMTPPIKDLLPRLTPILK-NRHEKVQENCIDLVGRI 1097 (1359)
Q Consensus 1059 -l-G~~~lsp~l~~lLP~L~~LLk-Dr~~rVR~AAielIg~I 1097 (1359)
+ +...+- -..=++.|+-|.+ ..++++-+++...+..+
T Consensus 643 ~~~nAkdl~--~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 643 NVLNAKDLL--EIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred hHHHHHHHH--hccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 1 111000 0123556666654 44456666666555554
No 317
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.05 E-value=1e+03 Score=31.50 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=80.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhh-ccCchhHHHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF-QEQTTEDVVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplL-qd~~~eD~v~lkaLg~Lae~Lg~~ikP 982 (1359)
.|..|+..|...+-.+..-+-..|......- -+ +-++++++-++ +..+... ++.|-..=.|
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~-------~~l~~~l~~y~~~t~s~~~----------~~il~~~~~P 66 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSD-RE-------PWLVNGLVDYYLSTNSQRA----------LEILVGVQEP 66 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-ch-------HHHHHHHHHHHhhcCcHHH----------HHHHHhcCCc
Confidence 4666777777776666666666665554421 11 14566666444 3332211 1111122348
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhc-ccChHHHHHHHHHHHHHHHHhC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM-GHLGVVLYEYLG-EEYPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL-~~Ll~iLle~L~-De~pEVl~siL~AL~aIa~vlG 1060 (1359)
|-..++..|-..+.. +.-|..+..+++.+..-=..- ...++ ..|+.-|+.+|. |...-++..++.+|-.+.-.+
T Consensus 67 ~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i- 142 (668)
T PF04388_consen 67 HDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPW-LYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI- 142 (668)
T ss_pred cHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCch-HHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc-
Confidence 888888888888875 456888888887775421100 01111 135555666663 334444444444444444333
Q ss_pred CCCCCCchhchHHHHHHH
Q psy10461 1061 MTKMTPPIKDLLPRLTPI 1078 (1359)
Q Consensus 1061 ~~~lsp~l~~lLP~L~~L 1078 (1359)
...+..+||.|+.|
T Consensus 143 ----p~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 143 ----PSSLGPHLPDLFNI 156 (668)
T ss_pred ----cchhhHHHHHHHHH
Confidence 33477888888874
No 318
>KOG4500|consensus
Probab=25.81 E-value=1.5e+03 Score=28.88 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHHHHhh---hcCCCchhHHhhhHHhhhc-ccccCChHHHHHHHHHHH
Q psy10461 1223 AVTPLLEDALMDRDLVHRQTACATIKHMALG---VYGFGCEDALTHLLNYVWP-NIFETSPHLVQAFMDAVE 1290 (1359)
Q Consensus 1223 ~VlPlLedaL~D~D~~VRqtA~saIk~LAl~---~~glG~EdaliHlLnlvlP-nI~Etsp~Vi~~ileaLe 1290 (1359)
+++..+++-+...|.+...++.-+|..+|.. |.++-..+.+..++..++. +..+.+-.++.+++.++-
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALR 386 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALR 386 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence 4666666666555666655555566665431 2222222444455555554 444455555566666553
No 319
>KOG2213|consensus
Probab=25.66 E-value=1.4e+03 Score=28.62 Aligned_cols=83 Identities=12% Similarity=0.239 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCchhHHHH----HHHh-hh--cccchhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcC------C
Q psy10461 1130 RATVNTFGYIAKAIGPHDVLAT----LLNN-LK--VQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYR------V 1193 (1359)
Q Consensus 1130 ~AAv~tLg~IAk~~GpedVlp~----LL~~-Lk--~qe~~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLk------D 1193 (1359)
.++.-++..+|+..+...++.+ +++. .- .++++++ ..-+++.++.-+.-+ ..||.++++|+ +
T Consensus 219 sCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~--lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~k 296 (460)
T KOG2213|consen 219 SCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLD--LLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPK 296 (460)
T ss_pred HHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHH--HHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCC
Confidence 4455555666665444433333 3333 11 1233333 345556655544222 68888888886 3
Q ss_pred CCchhHHHHHHHHHHHHHHhh
Q psy10461 1194 PELNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1194 pE~nVR~~VlkaLs~Iae~IG 1214 (1359)
-.++-++.=+.|+-.++.++|
T Consensus 297 t~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 297 TGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHh
Confidence 334456667777777777777
No 320
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=25.19 E-value=1.4e+03 Score=28.61 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhcCccchhhhHHHHHHH-HHHHhhccCchhH-HHHHHHHHHHHhhccccc-ccchHhHHHHHHH
Q psy10461 917 EQYRKMVMESIEKTMSNLGAADIDSRLEEQLID-GILYAFQEQTTED-VVMLNGFGTIVNQLGKRV-KPYLPQICGTILW 993 (1359)
Q Consensus 917 ~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld-~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i-kPyl~qILpiIl~ 993 (1359)
.+-|.+|+++|+.++..++...+. .+.+ .|++.|.+...-- .++...+...+......- .+....+.+.+..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~-----~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQ-----EIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHH-----HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 478999999999999988665333 2344 3667776654322 344444555555554321 1113455566666
Q ss_pred hhcCCC-----------HHHHHHHHHHHHHHHH
Q psy10461 994 RLNNKS-----------AKVRQQAADLISRIAV 1015 (1359)
Q Consensus 994 LL~Des-----------~~VR~aAAe~Is~LA~ 1015 (1359)
.|.+++ ..+|.++..++..+..
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666432 2455666666655544
No 321
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.14 E-value=6.2e+02 Score=27.87 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHhhhcCc----cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHH
Q psy10461 1162 QNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL 1232 (1359)
Q Consensus 1162 ~VRv~ta~AIg~LAea~gP----~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL 1232 (1359)
.+|-++..++-.+-+.|.. ..++..+...|+| +.+||.-.+-.|..++..........+..+.+-+...+
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 3788988999888888753 3678889999999 99999877777777666555444444555555555544
No 322
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=24.34 E-value=1e+03 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhc
Q psy10461 1201 GVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMD 1234 (1359)
Q Consensus 1201 ~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D 1234 (1359)
-+-|.+.......| ..|+ ..+-|.+.+++.+
T Consensus 75 l~tK~~~~y~k~~G---~~YL~~~L~p~I~~ii~~ 106 (309)
T cd05136 75 LATKAIEEYLKLVG---QDYLQDTLGEFIRALYES 106 (309)
T ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHcC
Confidence 34455555566555 6888 4566788877654
No 323
>KOG2199|consensus
Probab=24.08 E-value=2.5e+02 Score=34.68 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=32.4
Q ss_pred cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh
Q psy10461 1181 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 1215 (1359)
Q Consensus 1181 ~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~ 1215 (1359)
.++|.+|++-|...+++|...+++-+..+...||.
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~ 78 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGK 78 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcch
Confidence 48999999999999999999999999999999997
No 324
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=24.04 E-value=1.4e+03 Score=27.93 Aligned_cols=148 Identities=13% Similarity=0.180 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhCCCchhh--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHH-HHHHhhhcccc
Q psy10461 1085 KVQENCIDLVGRIADRGPEYVSA--REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA-TLLNNLKVQER 1161 (1359)
Q Consensus 1085 rVR~AAielIg~IA~~g~e~v~~--kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp-~LL~~Lk~qe~ 1161 (1359)
.+-...+.++..+....++..-. ..|++.+ ++.+-+..+.||..|...+-.++..+|++..+. .+.+.++....
T Consensus 149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l---~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~ 225 (372)
T PF12231_consen 149 SIISERLNIYKRLLSQFPQQMIKHADIWFPIL---FPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLE 225 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccc
Confidence 34444455555555544332221 1265543 444556678899998888778888888864433 33333332110
Q ss_pred hhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh---hchhhHHhHHHHHHHHHhccChH
Q psy10461 1162 QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE---MGKDYIYAVTPLLEDALMDRDLV 1238 (1359)
Q Consensus 1162 ~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~---~~kdYL~~VlPlLedaL~D~D~~ 1238 (1359)
.-++. . .+..-+..++.+++..+.-.-+|.. +--.+|. ..-+|+...+-+.+..+++.|..
T Consensus 226 ~~~~~-----~---------~~~~~L~~mi~~~~~~~~a~~iW~~--~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 226 NGKLI-----Q---------LYCERLKEMIKSKDEYKLAMQIWSV--VILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred cccHH-----H---------HHHHHHHHHHhCcCCcchHHHHHHH--HHHHhCCchhhccHhHhHHHHHHHHHhcCCCHH
Confidence 00221 0 1222233333332222221112221 1111121 23457788888899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy10461 1239 HRQTACATIKHMA 1251 (1359)
Q Consensus 1239 VRqtA~saIk~LA 1251 (1359)
+|..|..+=+.+-
T Consensus 290 ~k~~A~~aW~~li 302 (372)
T PF12231_consen 290 VKIQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 9988777766664
No 325
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=23.83 E-value=7.2e+02 Score=26.32 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=53.7
Q ss_pred cccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-hH-HHHHHHHHHHHh
Q psy10461 897 RLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-ED-VVMLNGFGTIVN 974 (1359)
Q Consensus 897 ~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD-~v~lkaLg~Lae 974 (1359)
+..|..+.+..|...|++.++.+-..|+..|..++.+-|..--..---..+++.|.-.+.+... .+ .-++..+.....
T Consensus 35 ~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 35 KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999999999999999999887421111112566666666654322 22 344444455554
Q ss_pred hcc
Q psy10461 975 QLG 977 (1359)
Q Consensus 975 ~Lg 977 (1359)
.+.
T Consensus 115 ~f~ 117 (142)
T cd03569 115 AFR 117 (142)
T ss_pred HhC
Confidence 443
No 326
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=23.27 E-value=9.5e+02 Score=28.95 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHh
Q psy10461 1202 VLKALSFLFEYIGEMGKDYI-YAVTPLLEDALM 1233 (1359)
Q Consensus 1202 VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~ 1233 (1359)
+-|++...+...| .+|+ ..+-|.+.++..
T Consensus 79 aTK~m~~y~k~~G---~~YL~~tL~pvI~~i~~ 108 (310)
T cd05134 79 TSKCIDETMKLAG---MHYLQVTLKPIIDEICQ 108 (310)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHc
Confidence 4455566666666 5788 466677777764
No 327
>KOG3961|consensus
Probab=22.44 E-value=1.8e+02 Score=33.29 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=61.2
Q ss_pred hHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhh---c
Q psy10461 901 ASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQ---L 976 (1359)
Q Consensus 901 ~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~---L 976 (1359)
-.-.+..+.+.|.+-+..+|--|-+-+..+..+.|...+. +.++|+-.|--+|+....+. ...++++..++.. .
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilp--VLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILP--VLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccc--ccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 3345788888888889999999999999999988844322 23344444444555554455 5666666655544 3
Q ss_pred ccccccchHhHHHHHH
Q psy10461 977 GKRVKPYLPQICGTIL 992 (1359)
Q Consensus 977 g~~ikPyl~qILpiIl 992 (1359)
|..+-||-.||+|++-
T Consensus 190 G~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhHHHHhhhhhh
Confidence 4556799999999764
No 328
>KOG3929|consensus
Probab=22.39 E-value=5e+02 Score=30.68 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=43.0
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcC
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYG 1256 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~g 1256 (1359)
.++-.=...+.+=+++.|..+|++|.+++.++|...- +..+=+|-|-. .+| .++.|+|||...
T Consensus 194 ~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLl-mfSskMe~l~K-------~~r----~~i~HlaFG~~~ 256 (363)
T KOG3929|consen 194 VIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALL-MFSSKMEALLK-------KIR----GVINHLAFGIDK 256 (363)
T ss_pred EEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHH-HHHHhhHHHHH-------HHH----hhHHHhhcCCcC
Confidence 5666666777888899999999999999999996321 11233443322 233 478899987554
No 329
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=21.67 E-value=1.1e+02 Score=29.04 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHh--hCCCchhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHh
Q psy10461 1087 QENCIDLVGRIAD--RGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1087 R~AAielIg~IA~--~g~e~v~~kE~mrIc~eLLelLk-D~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
.++++.+++.|+. .|..+++..+ +...++.+.. ++..+||-.|.-+||.|+...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~---iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESD---IVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcC---HHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4688999999987 3555555332 4444455544 568899999999999999863
No 330
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.37 E-value=4.6e+02 Score=26.42 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=46.0
Q ss_pred hhHHhHHHHHHHHHh-ccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhh
Q psy10461 1219 DYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 1296 (1359)
Q Consensus 1219 dYL~~VlPlLedaL~-D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aL 1296 (1359)
+++..++|.+.+.+. ....+.|.++-.++..|+-.+.- ..+++..++..+..+...... ....+-++-.+...-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 577889999999888 66788988777777777744443 234555555556555433332 233444555555444
No 331
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.99 E-value=9.3e+02 Score=25.60 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCccchh----hhHHHHHHHHHHHhh----ccCchhH-HHHHHHHHHHHhhcccccccchHh
Q psy10461 916 NEQYRKMVMESIEKTMSNLGAADID----SRLEEQLIDGILYAF----QEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQ 986 (1359)
Q Consensus 916 s~~VR~~Aa~~L~~Ia~~LGpe~l~----~~L~~~Lld~LLplL----qd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~q 986 (1359)
+...|..+++.|..+...-|+.-.. ..+...+.+.+.+.+ ....... ..+++.|..+.......++.-++-
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999877764221 123333334444433 3322222 567788888888888878777777
Q ss_pred HHHHHHH-hhcCCC--HHHHHHHHHHHHHHHH
Q psy10461 987 ICGTILW-RLNNKS--AKVRQQAADLISRIAV 1015 (1359)
Q Consensus 987 ILpiIl~-LL~Des--~~VR~aAAe~Is~LA~ 1015 (1359)
+++.+.. .+..++ ..-|.-+.+++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 7777766 554333 3556666677777764
No 332
>KOG1837|consensus
Probab=20.90 E-value=2.1e+03 Score=31.62 Aligned_cols=74 Identities=18% Similarity=0.114 Sum_probs=54.8
Q ss_pred hHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Q psy10461 1071 LLPRLTPIL---KNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1071 lLP~L~~LL---kDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
+-|-+..++ ++.+.++|..|+..+..+...-.++.... +.++..-+-+++.|..+.|-..|.+.+..+-+.+|.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~l-L~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVL-LPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHh-hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 455555544 47777999999999999988666555544 444555556778899999999999988888777774
No 333
>KOG4190|consensus
Probab=20.16 E-value=1.1e+03 Score=30.32 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhHhhhhccc
Q psy10461 1281 LVQAFMDAVEGLRVALGPVRILQYVLQGLFHP 1312 (1359)
Q Consensus 1281 Vi~~ileaLeaLr~aLG~~~ll~~vLpgLfhp 1312 (1359)
+.+.+.+++-++..-+|.+.--.|.-+.++.|
T Consensus 515 ia~Kf~dai~ais~kiGsdmTReh~cQPllnp 546 (1034)
T KOG4190|consen 515 IAQKFCDAIHAISQKIGSDMTREHACQPLLNP 546 (1034)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhcCccccc
Confidence 34558889999999999988777777776644
Done!