Query psy10461
Match_columns 1359
No_of_seqs 413 out of 808
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 18:50:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 1.7E-31 5.8E-36 318.9 30.8 331 903-1250 242-585 (588)
2 1b3u_A Protein (protein phosph 100.0 3.8E-26 1.3E-30 272.8 32.8 402 904-1325 165-576 (588)
3 2bpt_A Importin beta-1 subunit 99.9 1.3E-21 4.5E-26 244.7 46.7 390 904-1297 412-860 (861)
4 2bpt_A Importin beta-1 subunit 99.9 1.4E-21 4.6E-26 244.5 43.3 384 902-1297 323-766 (861)
5 4fdd_A Transportin-1; heat rep 99.9 2.7E-21 9.4E-26 244.8 37.7 417 915-1340 333-795 (852)
6 4fdd_A Transportin-1; heat rep 99.9 1.5E-21 5.2E-26 247.2 35.3 427 902-1342 89-570 (852)
7 1u6g_C TIP120 protein, CAND1; 99.9 4.6E-20 1.6E-24 242.3 36.2 432 902-1342 85-611 (1230)
8 1u6g_C TIP120 protein, CAND1; 99.9 1E-19 3.5E-24 239.0 37.0 424 902-1334 174-726 (1230)
9 1qgr_A Protein (importin beta 99.9 4.6E-19 1.6E-23 222.1 38.8 433 903-1342 172-735 (876)
10 1qgr_A Protein (importin beta 99.9 4.7E-19 1.6E-23 222.1 36.9 390 902-1294 407-871 (876)
11 1ibr_B P95, importin beta-1 su 99.8 7.7E-18 2.6E-22 195.0 30.8 322 902-1232 89-460 (462)
12 2jdq_A Importin alpha-1 subuni 99.8 7.2E-17 2.5E-21 186.9 26.9 347 905-1252 22-390 (450)
13 1ibr_B P95, importin beta-1 su 99.8 6E-16 2.1E-20 179.2 32.9 391 905-1311 3-458 (462)
14 1wa5_B Importin alpha subunit; 99.7 1.4E-16 4.8E-21 191.2 27.4 350 903-1252 87-457 (530)
15 4b8j_A Importin subunit alpha- 99.7 6.1E-15 2.1E-19 176.5 30.0 348 903-1251 74-442 (528)
16 2jdq_A Importin alpha-1 subuni 99.7 2.4E-15 8.2E-20 174.2 23.5 345 903-1250 64-441 (450)
17 1wa5_B Importin alpha subunit; 99.6 2.3E-14 7.9E-19 172.0 25.8 346 902-1250 129-508 (530)
18 4b8j_A Importin subunit alpha- 99.6 2.3E-13 7.8E-18 162.9 24.8 344 902-1250 116-494 (528)
19 2fho_A Spliceosomal protein SF 99.5 1.9E-16 6.5E-21 130.0 -1.7 45 333-377 3-47 (47)
20 3ul1_B Importin subunit alpha- 99.5 6.4E-13 2.2E-17 160.1 27.1 345 905-1251 59-429 (510)
21 3tpo_A Importin subunit alpha- 99.5 2.3E-12 8E-17 155.6 29.3 348 904-1251 77-448 (529)
22 2vgl_B AP-2 complex subunit be 99.5 1.5E-12 5.1E-17 159.7 22.9 378 905-1309 88-510 (591)
23 2vgl_B AP-2 complex subunit be 99.5 2.3E-12 8E-17 158.0 24.5 370 903-1293 121-531 (591)
24 1oyz_A Hypothetical protein YI 99.5 5.7E-12 2E-16 138.5 24.7 251 904-1206 24-277 (280)
25 3lqv_P Splicing factor 3B subu 99.5 3.3E-14 1.1E-18 111.7 4.2 39 330-368 1-39 (39)
26 2qk2_A LP04448P; mini spindles 99.4 1E-11 3.5E-16 134.7 21.3 193 950-1150 19-214 (242)
27 2qk2_A LP04448P; mini spindles 99.4 4.6E-12 1.6E-16 137.4 18.2 181 1070-1251 15-204 (242)
28 1oyz_A Hypothetical protein YI 99.4 2.3E-11 8E-16 133.6 23.9 251 947-1247 24-277 (280)
29 1jdh_A Beta-catenin; beta-cate 99.4 3.3E-10 1.1E-14 134.2 35.4 377 904-1293 18-488 (529)
30 2z6g_A B-catenin; FULL-length, 99.4 2.9E-11 9.9E-16 153.3 27.7 385 902-1296 191-665 (780)
31 2z6g_A B-catenin; FULL-length, 99.4 1.7E-10 5.9E-15 146.2 33.6 381 902-1293 149-621 (780)
32 1jdh_A Beta-catenin; beta-cate 99.4 1.1E-10 3.8E-15 138.2 28.3 383 902-1292 58-528 (529)
33 3tpo_A Importin subunit alpha- 99.4 3.4E-11 1.1E-15 145.5 23.6 345 902-1249 118-494 (529)
34 2z6h_A Catenin beta-1, beta-ca 99.3 6.1E-10 2.1E-14 137.4 34.8 379 904-1293 15-485 (644)
35 3ul1_B Importin subunit alpha- 99.3 2.3E-11 7.7E-16 146.6 21.2 345 903-1249 100-475 (510)
36 2qk1_A Protein STU2; STU2P, XM 99.3 5E-11 1.7E-15 131.6 21.7 204 950-1154 20-233 (249)
37 1w63_A Adapter-related protein 99.3 1.3E-10 4.3E-15 143.7 27.0 381 905-1324 36-446 (618)
38 2z6h_A Catenin beta-1, beta-ca 99.3 5.7E-10 1.9E-14 137.7 31.8 385 902-1296 55-529 (644)
39 1w63_A Adapter-related protein 99.3 7.9E-10 2.7E-14 136.6 32.7 367 903-1294 142-577 (618)
40 3now_A UNC-45 protein, SD10334 99.2 2.8E-09 9.5E-14 135.2 33.1 403 900-1313 287-759 (810)
41 2x1g_F Cadmus; transport prote 99.2 8.7E-10 3E-14 141.9 28.1 386 915-1310 256-740 (971)
42 1wa5_C Importin alpha RE-expor 99.2 1.1E-09 3.7E-14 141.4 28.7 338 904-1252 86-525 (960)
43 3ltm_A Alpha-REP4; protein eng 99.2 2.1E-10 7.1E-15 120.9 16.8 189 985-1214 18-206 (211)
44 3ltj_A Alpharep-4; protein eng 99.2 7.8E-10 2.7E-14 115.6 20.8 184 1027-1250 13-196 (201)
45 3ltm_A Alpha-REP4; protein eng 99.2 6.7E-10 2.3E-14 117.0 20.2 183 1029-1251 20-202 (211)
46 3ltj_A Alpharep-4; protein eng 99.2 2.8E-10 9.4E-15 119.0 16.9 188 981-1209 9-196 (201)
47 2x19_B Importin-13; nuclear tr 99.2 3.5E-09 1.2E-13 135.7 30.1 387 902-1299 240-719 (963)
48 1wa5_C Importin alpha RE-expor 99.2 1.7E-08 5.7E-13 130.4 35.3 371 914-1303 372-800 (960)
49 3now_A UNC-45 protein, SD10334 99.1 4.3E-09 1.5E-13 133.5 25.1 413 910-1328 254-737 (810)
50 2qk1_A Protein STU2; STU2P, XM 99.1 1.6E-09 5.5E-14 119.6 18.7 177 1075-1251 21-219 (249)
51 4hxt_A De novo protein OR329; 99.1 1.3E-09 4.5E-14 115.9 15.7 227 987-1215 3-245 (252)
52 2x1g_F Cadmus; transport prote 99.0 3.1E-08 1.1E-12 127.5 29.9 343 918-1293 436-813 (971)
53 2x19_B Importin-13; nuclear tr 99.0 3E-07 1E-11 117.9 38.2 363 918-1295 422-847 (963)
54 3lqv_P Splicing factor 3B subu 99.0 1.8E-10 6.1E-15 90.8 4.7 39 783-821 1-39 (39)
55 2vgl_A Adaptor protein complex 99.0 2.4E-07 8.2E-12 114.8 35.2 370 903-1293 146-588 (621)
56 4hxt_A De novo protein OR329; 99.0 2.3E-09 8E-14 114.0 14.9 240 904-1144 3-244 (252)
57 4db8_A Armadillo-repeat protei 99.0 2.8E-09 9.5E-14 114.5 14.7 221 1030-1251 14-250 (252)
58 1xm9_A Plakophilin 1; armadill 99.0 3.1E-08 1E-12 118.0 23.2 341 905-1251 4-448 (457)
59 2vgl_A Adaptor protein complex 98.9 1.7E-07 5.7E-12 116.3 29.3 386 905-1323 37-464 (621)
60 3m1i_C Exportin-1; heat repeat 98.9 2.2E-07 7.6E-12 121.2 31.3 373 916-1297 113-621 (1049)
61 4db8_A Armadillo-repeat protei 98.9 1.9E-09 6.3E-14 115.9 9.5 235 904-1140 13-250 (252)
62 3l6x_A Catenin delta-1; cateni 98.9 3.3E-07 1.1E-11 112.8 29.9 344 904-1251 49-475 (584)
63 4ady_A RPN2, 26S proteasome re 98.9 2.9E-07 1E-11 117.6 29.9 302 903-1244 392-711 (963)
64 4db6_A Armadillo repeat protei 98.8 2.1E-08 7.1E-13 104.9 14.2 183 1069-1251 11-208 (210)
65 4hat_C Exportin-1; heat repeat 98.8 4.2E-06 1.4E-10 109.4 35.4 369 903-1311 235-695 (1023)
66 3nmz_A APC variant protein; pr 98.7 4.9E-07 1.7E-11 108.4 23.2 317 902-1253 69-451 (458)
67 2fho_A Spliceosomal protein SF 98.7 6.1E-10 2.1E-14 91.8 -2.3 44 786-829 3-46 (47)
68 3m1i_C Exportin-1; heat repeat 98.7 9.9E-06 3.4E-10 105.7 35.2 309 916-1229 247-638 (1049)
69 2iw3_A Elongation factor 3A; a 98.7 7E-07 2.4E-11 115.1 23.8 286 963-1298 32-328 (986)
70 3ibv_A Exportin-T; karyopherin 98.7 6.1E-06 2.1E-10 107.4 31.3 395 902-1310 232-748 (980)
71 4db6_A Armadillo repeat protei 98.6 2.1E-07 7.1E-12 97.3 12.7 196 985-1210 11-208 (210)
72 1xm9_A Plakophilin 1; armadill 98.6 8.1E-06 2.8E-10 97.2 27.1 296 988-1292 4-404 (457)
73 2db0_A 253AA long hypothetical 98.6 3.7E-06 1.3E-10 88.7 20.8 210 1068-1294 30-246 (253)
74 3ibv_A Exportin-T; karyopherin 98.6 1.4E-05 4.9E-10 104.0 30.9 417 914-1344 204-745 (980)
75 4hat_C Exportin-1; heat repeat 98.6 1.5E-05 5E-10 104.3 30.7 320 918-1250 429-831 (1023)
76 4ady_A RPN2, 26S proteasome re 98.5 9.8E-06 3.3E-10 103.8 27.3 271 963-1276 413-699 (963)
77 2db0_A 253AA long hypothetical 98.5 7.3E-06 2.5E-10 86.5 21.4 214 902-1141 31-246 (253)
78 3l6x_A Catenin delta-1; cateni 98.4 1.8E-05 6.1E-10 97.6 24.9 337 947-1292 49-474 (584)
79 3nmz_A APC variant protein; pr 98.4 1.4E-05 4.8E-10 95.9 21.6 219 1071-1294 190-450 (458)
80 4ffb_C Protein STU2; tubulin f 98.3 9.4E-06 3.2E-10 90.1 17.4 196 908-1146 14-217 (278)
81 1xqr_A HSPBP1 protein; armadil 98.3 5.6E-06 1.9E-10 93.9 13.8 176 964-1142 59-239 (296)
82 4ffb_C Protein STU2; tubulin f 98.3 8.6E-06 2.9E-10 90.4 15.0 179 1072-1251 12-211 (278)
83 3nmw_A APC variant protein; AR 98.2 1.1E-05 3.7E-10 93.7 16.3 207 1042-1253 98-335 (354)
84 2iw3_A Elongation factor 3A; a 98.2 4.6E-05 1.6E-09 98.5 22.0 295 908-1250 19-322 (986)
85 3nmw_A APC variant protein; AR 98.2 1.6E-05 5.4E-10 92.3 15.8 215 998-1214 96-337 (354)
86 1xqr_A HSPBP1 protein; armadil 98.1 6.9E-05 2.4E-09 85.0 19.3 180 1069-1253 27-239 (296)
87 2of3_A ZYG-9; multifunctional 98.1 8.7E-05 3E-09 83.1 19.5 145 1079-1223 96-248 (266)
88 3opb_A SWI5-dependent HO expre 98.0 0.00089 3E-08 84.6 28.1 309 900-1213 331-730 (778)
89 3oc3_A Helicase MOT1, MOT1; re 97.9 5.3E-05 1.8E-09 91.0 13.9 203 1113-1328 175-403 (800)
90 3gjx_A Exportin-1; transport, 97.9 0.012 4.3E-07 77.2 37.4 369 903-1311 247-721 (1073)
91 1te4_A Conserved protein MTH18 97.9 8.2E-07 2.8E-11 87.6 -1.2 119 1069-1207 11-129 (131)
92 2of3_A ZYG-9; multifunctional 97.9 0.00033 1.1E-08 78.5 19.4 153 984-1146 85-241 (266)
93 3opb_A SWI5-dependent HO expre 97.9 0.0056 1.9E-07 77.4 32.2 365 905-1293 257-682 (778)
94 3gjx_A Exportin-1; transport, 97.9 0.0054 1.9E-07 80.6 33.1 329 911-1250 446-857 (1073)
95 3a6p_A Exportin-5; exportin-5, 97.9 0.0096 3.3E-07 79.3 35.9 264 987-1254 250-615 (1204)
96 3b2a_A TON_1937, putative unch 97.8 0.001 3.6E-08 72.9 19.6 180 1069-1251 32-217 (265)
97 3tjz_B Coatomer subunit gamma; 97.8 0.00032 1.1E-08 81.6 16.4 306 904-1246 27-347 (355)
98 1te4_A Conserved protein MTH18 97.7 2.1E-06 7.3E-11 84.7 -1.9 114 1116-1248 16-129 (131)
99 3tjz_B Coatomer subunit gamma; 97.7 0.00037 1.3E-08 81.1 15.4 273 904-1206 69-348 (355)
100 3oc3_A Helicase MOT1, MOT1; re 97.6 0.00021 7.2E-09 86.0 11.6 241 1071-1325 175-432 (800)
101 3b2a_A TON_1937, putative unch 97.6 0.0027 9.3E-08 69.7 18.8 189 900-1100 30-219 (265)
102 1lrv_A LRV, leucine-rich repea 97.5 3.6E-05 1.2E-09 85.2 3.8 186 910-1208 57-243 (244)
103 1lrv_A LRV, leucine-rich repea 97.4 3.2E-05 1.1E-09 85.6 2.0 163 908-1172 79-242 (244)
104 3l9t_A Putative uncharacterize 97.4 0.00026 8.7E-09 77.9 8.7 130 1118-1252 77-207 (240)
105 3a6p_A Exportin-5; exportin-5, 97.4 0.051 1.8E-06 72.4 31.2 370 916-1297 220-700 (1204)
106 3l9t_A Putative uncharacterize 97.1 0.0029 1E-07 69.6 12.8 137 1068-1214 69-210 (240)
107 3grl_A General vesicular trans 96.7 0.34 1.2E-05 60.2 27.0 322 897-1251 15-393 (651)
108 3u0r_A Apoptosis inhibitor 5; 96.0 1.2 3.9E-05 53.7 25.3 94 1128-1221 241-364 (507)
109 3u0r_A Apoptosis inhibitor 5; 95.8 1.4 4.7E-05 53.1 24.8 238 1074-1344 69-326 (507)
110 3o2t_A Symplekin; heat repeat, 95.4 0.7 2.4E-05 54.4 20.2 112 983-1099 60-183 (386)
111 3tt9_A Plakophilin-2; cell adh 95.2 0.19 6.6E-06 55.1 13.9 103 1149-1252 10-124 (233)
112 3gs3_A Symplekin, LD45768P; he 95.1 1.7 5.9E-05 48.4 21.3 112 983-1099 50-173 (257)
113 3tt9_A Plakophilin-2; cell adh 95.0 0.12 3.9E-06 56.9 11.4 179 1069-1252 7-229 (233)
114 4gmo_A Putative uncharacterize 94.6 0.17 5.8E-06 63.4 12.9 156 985-1142 34-215 (684)
115 1lsh_A Lipovitellin (LV-1N, LV 94.2 1.6 5.5E-05 57.5 21.5 270 986-1299 289-581 (1056)
116 1lsh_A Lipovitellin (LV-1N, LV 94.2 1.4 4.9E-05 58.0 20.8 174 985-1181 390-581 (1056)
117 3grl_A General vesicular trans 92.4 0.75 2.6E-05 57.3 13.1 110 1182-1292 122-239 (651)
118 4atg_A TAF6; transcription, TF 90.8 2.4 8.2E-05 45.5 13.3 110 918-1039 23-142 (196)
119 1vsy_5 Proteasome activator BL 90.2 14 0.00048 48.5 22.3 269 974-1251 499-872 (997)
120 4gmo_A Putative uncharacterize 88.7 1.4 4.9E-05 55.1 11.1 85 1147-1232 35-128 (684)
121 2npp_B PP2A, B subunit, serine 81.3 13 0.00045 44.5 14.0 237 894-1142 153-400 (449)
122 3fga_B Serine/threonine-protei 81.2 22 0.00074 42.1 15.5 240 894-1142 120-367 (403)
123 4atg_A TAF6; transcription, TF 77.8 14 0.00046 39.7 11.3 161 978-1157 7-174 (196)
124 4fxw_B Splicing factor 1; UHM, 77.4 3.3 0.00011 41.3 6.0 44 299-347 6-52 (124)
125 1vsy_5 Proteasome activator BL 75.7 8.4 0.00029 50.5 10.9 108 902-1015 842-966 (997)
126 1upk_A MO25 protein; transfera 75.4 77 0.0026 36.7 17.3 82 1071-1155 210-298 (341)
127 1w9c_A CRM1 protein, exportin 73.4 57 0.0019 37.5 15.6 142 918-1097 44-194 (321)
128 3ldz_A STAM-1, signal transduc 68.4 14 0.00049 37.2 8.3 73 1179-1251 39-113 (140)
129 3g2s_A C-terminal fragment of 67.4 16 0.00056 37.4 8.6 73 1179-1251 45-125 (149)
130 1mhq_A ADP-ribosylation factor 60.8 19 0.00066 36.7 7.7 73 1179-1251 35-115 (148)
131 1x5b_A Signal transducing adap 60.4 26 0.0009 36.2 8.7 73 1179-1251 49-124 (163)
132 3jxy_A Alkylpurine DNA glycosy 59.9 25 0.00084 38.1 8.9 142 1073-1230 64-207 (232)
133 1juq_A ADP-ribosylation factor 56.2 31 0.0011 36.0 8.5 73 1179-1251 47-127 (171)
134 3ldz_A STAM-1, signal transduc 53.1 1.4E+02 0.0048 29.9 12.5 78 1068-1146 40-119 (140)
135 3zyq_A Hepatocyte growth facto 52.8 45 0.0015 36.1 9.4 74 1178-1251 41-117 (226)
136 2fv2_A RCD1 required for cell 52.3 73 0.0025 35.6 10.9 127 1182-1308 101-238 (268)
137 3jxy_A Alkylpurine DNA glycosy 51.6 67 0.0023 34.7 10.6 137 1037-1190 70-208 (232)
138 3o2t_A Symplekin; heat repeat, 51.1 3.6E+02 0.012 31.6 28.5 148 903-1059 25-185 (386)
139 2b6c_A Hypothetical protein EF 50.8 87 0.003 33.5 11.2 126 1078-1212 63-189 (220)
140 3ebb_A Phospholipase A2-activa 50.2 1.2E+02 0.0042 34.3 12.8 153 1131-1294 103-263 (304)
141 1dvp_A HRS, hepatocyte growth 46.1 86 0.003 33.6 10.3 73 1179-1251 39-114 (220)
142 1upk_A MO25 protein; transfera 46.1 4E+02 0.014 30.8 20.9 110 1073-1208 167-280 (341)
143 2jak_A Serine/threonine-protei 45.2 1.4E+02 0.0048 35.2 12.5 103 895-999 166-271 (392)
144 1w9c_A CRM1 protein, exportin 41.9 50 0.0017 37.9 7.9 70 1183-1252 74-151 (321)
145 3g2s_A C-terminal fragment of 41.8 1.8E+02 0.0061 29.6 11.3 90 1068-1157 46-142 (149)
146 1x5b_A Signal transducing adap 40.2 1.8E+02 0.0063 29.9 11.2 78 1068-1146 50-130 (163)
147 2b6c_A Hypothetical protein EF 38.9 44 0.0015 35.9 6.5 98 1081-1187 101-198 (220)
148 4fxw_B Splicing factor 1; UHM, 37.8 22 0.00077 35.5 3.7 17 783-799 35-51 (124)
149 1juq_A ADP-ribosylation factor 36.1 1.4E+02 0.0048 31.0 9.6 90 1068-1157 48-144 (171)
150 1elk_A Target of MYB1; superhe 33.4 1.1E+02 0.0036 31.4 8.1 73 1179-1251 50-129 (157)
151 3ebb_A Phospholipase A2-activa 27.8 5.3E+02 0.018 29.1 13.3 75 982-1056 187-262 (304)
152 1mhq_A ADP-ribosylation factor 26.3 2.2E+02 0.0074 28.9 8.8 90 1068-1157 36-132 (148)
153 1dvp_A HRS, hepatocyte growth 22.1 4.1E+02 0.014 28.2 10.6 78 1068-1145 40-119 (220)
154 1vsy_4 Proteasome activator BL 21.3 5E+02 0.017 33.2 12.7 112 901-1017 337-457 (799)
155 3rru_A TOM1L1 protein; structu 20.8 1.1E+02 0.0039 31.2 5.5 77 1179-1255 50-133 (152)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.7e-31 Score=318.90 Aligned_cols=331 Identities=19% Similarity=0.278 Sum_probs=276.7
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik 981 (1359)
.+++.+...++|++|.||..|+++|..++..+|++.. ...++..++.++++...+. ..++.+|+.++..++....
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT----KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH----HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccc----hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 3566677778999999999999999999998887632 2346677777777776666 6778899999999886543
Q ss_pred --cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 982 --PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 982 --Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
+|++.++|.+..+++|+++.||..++.+++.++..++. ...+..+++.|...|+|.+++|+..++.+++.+...+
T Consensus 318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 68899999999999999999999999999999998873 3345678888999999999999999999999999887
Q ss_pred CCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10461 1060 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 1138 (1359)
Q Consensus 1060 G~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~-g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~ 1138 (1359)
|.+. ....++|.+..+++|.+|+||.+++++++.++.. +.+++... ++..++.+|+|....||++|+.+++.
T Consensus 395 ~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~----l~~~l~~~l~d~~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK----LNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp CHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHH----HHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred CHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHH----HHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 6432 2457899999999999999999999999999884 55444333 33444678999999999999999999
Q ss_pred HHHHhCchh----HHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc----ccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1139 IAKAIGPHD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF----TVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1139 IAk~~Gped----Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~----~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
+++.+|++. +++.|+..++..++.+|.+++.+++.+++.+++. .++|.|++.++|++++||..++++|+.++
T Consensus 468 l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 468 LVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHH
Confidence 999999864 4555555555667789999999999999999864 79999999999999999999999999999
Q ss_pred HHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1211 EYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1211 e~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
+.+|. +++ ..++|+|..++.|+|.+||..|+.++..+
T Consensus 548 ~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 548 PILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 98885 333 68999999999999999999999988775
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.95 E-value=3.8e-26 Score=272.77 Aligned_cols=402 Identities=12% Similarity=0.094 Sum_probs=323.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
+++.|...++|+++.||..|++.+..++..+|.+... +.++..++.++++..... ..++.+++.++..++.. .
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK----SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHH----HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHH----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 4566667789999999999999999999988875222 234555555566655444 56778889998887642 3
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
+...++|.+..+++|++..||..|+++++.++..++. +.+...+++.+.+.+.|..++|+..++.+|+.++..+|..
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 4577899999999999999999999999999987753 3345668888899999999999999999999999987643
Q ss_pred CC-CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10461 1063 KM-TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1063 ~l-sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk 1141 (1359)
.. .+....++|.+..+++|.+|.||.+++.+++.++....... ....+...++.+|+|.+..||.+++.+++.+.+
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 10 02356788888889999999999999999999987433211 012244455677899899999999999999999
Q ss_pred HhCch----hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc----ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHh
Q psy10461 1142 AIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF----TVLPALMNEYRVPELNVQNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1142 ~~Gpe----dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~----~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~I 1213 (1359)
.+|.+ .+++.|+..++..++.+|.+++.+++.++..+|+. .++|.++..|+|++.+||..++.+|+.++..+
T Consensus 393 ~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp HSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 98875 45666676677777889999999999999998864 68999999999999999999999999999999
Q ss_pred hhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHH
Q psy10461 1214 GEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR 1293 (1359)
Q Consensus 1214 G~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr 1293 (1359)
|. ..++..++|.|..++.|.+..+|.+++.++..++.. +|.+....++++.++..+.+.+++|+..++.++..+.
T Consensus 473 ~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 473 GK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV---CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp CH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred Cc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHH
Confidence 86 345688999999988899999999999999988743 3444555677888888888899999999999999999
Q ss_pred HhhchHHHHHhHhhhhccccccchhhHHHHHH
Q psy10461 1294 VALGPVRILQYVLQGLFHPARKVRDVYWKIYN 1325 (1359)
Q Consensus 1294 ~aLG~~~ll~~vLpgLfhpA~kvrd~~WRvyn 1325 (1359)
..+|...+.+.++|.+..... |.-|.++.
T Consensus 548 ~~~~~~~~~~~~~p~l~~l~~---d~d~~vr~ 576 (588)
T 1b3u_A 548 PILDNSTLQSEVKPILEKLTQ---DQDVDVKY 576 (588)
T ss_dssp GGSCHHHHHHHHHHHHHHHTT---CSSHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHcC---CCchhHHH
Confidence 999998888888888876644 55566663
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.92 E-value=1.3e-21 Score=244.71 Aligned_cols=390 Identities=12% Similarity=0.106 Sum_probs=290.0
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc----c
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG----K 978 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg----~ 978 (1359)
+++.|+..++|+++.||..++.++..++..+++..........++..++..+.+. ... ..++.+|+.+++.++ .
T Consensus 412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccch
Confidence 4566677788999999999999999999988764222233446777777777765 444 677888999999886 5
Q ss_pred ccccchHhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc---------------cC
Q psy10461 979 RVKPYLPQICGTILWRLNN--KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE---------------EY 1041 (1359)
Q Consensus 979 ~ikPyl~qILpiIl~LL~D--es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D---------------e~ 1041 (1359)
.+.||+..|++.+..++++ .++.||..++++++.++...+.. ...++..+++.+++.|.+ ..
T Consensus 491 ~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~ 569 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSL 569 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHH
Confidence 6789999999999999984 44799999999999999887632 134566777777777653 24
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHH
Q psy10461 1042 PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE-KVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL 1120 (1359)
Q Consensus 1042 pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~-rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLel 1120 (1359)
.+++..++.++..++..+|. .+.|+...++|.+..++++.++ .||+.++.+++.++....+.+... +..++..++..
T Consensus 570 ~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~ 647 (861)
T 2bpt_A 570 QELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKY-LETFSPYLLKA 647 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHH
Confidence 55667889999999999986 3667778888888888988888 999999999999988544333322 33455555677
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHhhhccc--chhHHHHHHHHHHHhhhcCcc------ccHHH
Q psy10461 1121 LKAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCSPF------TVLPA 1186 (1359)
Q Consensus 1121 LkD~~~sVR~AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~qe--~~VRv~ta~AIg~LAea~gP~------~VLPa 1186 (1359)
|.+....+|..++.+++.|++.+|.+ .+++.++..+...+ ..+|.++..+++.++..+|.. .++|.
T Consensus 648 l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~ 727 (861)
T 2bpt_A 648 LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727 (861)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77777889999999999999998863 45555667776543 679999999999999888653 78898
Q ss_pred HHHhcCCCC-----------chhHHHHHHHHHHHHHHhh---hhchhhHHhHHHHHHHHHhcc----ChHHHHHHHHHHH
Q psy10461 1187 LMNEYRVPE-----------LNVQNGVLKALSFLFEYIG---EMGKDYIYAVTPLLEDALMDR----DLVHRQTACATIK 1248 (1359)
Q Consensus 1187 LLnlLkDpE-----------~nVR~~VlkaLs~Iae~IG---~~~kdYL~~VlPlLedaL~D~----D~~VRqtA~saIk 1248 (1359)
+++.+.... .+||.+++.++..++..+| ..+.+|+..+++.|..++.|. +..+|.+|+.++.
T Consensus 728 l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~ 807 (861)
T 2bpt_A 728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIG 807 (861)
T ss_dssp HHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 888887421 4699999999999999998 457889999999999988874 8899999999999
Q ss_pred HHHhhhcCCCchhHHh-hhHHhhhcccc---cCChHHHHHHHHHHHHHHHhhc
Q psy10461 1249 HMALGVYGFGCEDALT-HLLNYVWPNIF---ETSPHLVQAFMDAVEGLRVALG 1297 (1359)
Q Consensus 1249 ~LAl~~~glG~Edali-HlLnlvlPnI~---Etsp~Vi~~ileaLeaLr~aLG 1297 (1359)
.|+..+.|-....-+. .+++.++..+. +.+..++.++--+++.++..++
T Consensus 808 ~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~~ 860 (861)
T 2bpt_A 808 DIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp HHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 9974432211111112 22333333322 2334566666667777665443
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.91 E-value=1.4e-21 Score=244.55 Aligned_cols=384 Identities=13% Similarity=0.141 Sum_probs=303.3
Q ss_pred HhHHHHHhhhcCC-------CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHH
Q psy10461 902 SEIINRVVDDLKD-------ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIV 973 (1359)
Q Consensus 902 ~eiI~~Ll~~LKD-------es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~La 973 (1359)
..+++.++..+++ ++|.+|..|...|..++..+|.. +.+.+++.+...+++..... +.++.+|+.++
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~-----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-----ILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh-----HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 5567778777763 46899999999999999998844 23356666666666654444 67888999999
Q ss_pred hhcc-cccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-HHhHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy10461 974 NQLG-KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ-EEKLMGHLGVVLYEYLGEEYPEVLGSILGA 1051 (1359)
Q Consensus 974 e~Lg-~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~-e~~lL~~Ll~iLle~L~De~pEVl~siL~A 1051 (1359)
+.++ ..+.+|+.++++.+...++|+++.||..+++++++++..++... ....+..+++.|+..|.+. +.++..++.+
T Consensus 398 ~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~a 476 (861)
T 2bpt_A 398 DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWT 476 (861)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 8876 56789999999999999999999999999999999999886421 1356888999999999886 8899999999
Q ss_pred HHHHHHHhC---CCCCCCchhchHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH----
Q psy10461 1052 LKAIVNVIG---MTKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK---- 1122 (1359)
Q Consensus 1052 L~aIa~vlG---~~~lsp~l~~lLP~L~~LLk--Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk---- 1122 (1359)
+..++..++ ...+.+++..+++.+..+++ |.++.||.+++++++.++......+... +..++..+++.|.
T Consensus 477 l~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 477 IINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET-SASISTFVMDKLGQTMS 555 (861)
T ss_dssp HHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHH-HHHHHHHHHHHHHHHHh
Confidence 999999876 24456777777788888886 5558999999999999998766543322 2334444444444
Q ss_pred -----------hhHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHhhhcccc-hhHHHHHHHHHHHhhhcCc----
Q psy10461 1123 -----------AHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP---- 1180 (1359)
Q Consensus 1123 -----------D~~~sVR~AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~qe~-~VRv~ta~AIg~LAea~gP---- 1180 (1359)
+....+|..++.+|+.|++.+|.+ .+++.++..++..+. .+|..+..+++.++..++.
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 635 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK 635 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH
T ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH
Confidence 235679999999999999998863 456666777776666 7899999999999988864
Q ss_pred c--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccC--hHHHHHHHHHHHHHHhhhcC
Q psy10461 1181 F--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYG 1256 (1359)
Q Consensus 1181 ~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D--~~VRqtA~saIk~LAl~~~g 1256 (1359)
+ .++|.+++.+++++.+||..++.+++.+++.+|..+.+|+..++|.+...+.+.+ ..+|..+..++..|+..+.
T Consensus 636 ~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~- 714 (861)
T 2bpt_A 636 YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG- 714 (861)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh-
Confidence 2 7999999999999999999999999999999998888999999999999888764 8899999999999885542
Q ss_pred CCchhHHhhhHHhhhccccc--C-C------------hHHHHHHHHHHHHHHHhhc
Q psy10461 1257 FGCEDALTHLLNYVWPNIFE--T-S------------PHLVQAFMDAVEGLRVALG 1297 (1359)
Q Consensus 1257 lG~EdaliHlLnlvlPnI~E--t-s------------p~Vi~~ileaLeaLr~aLG 1297 (1359)
+.+.++++.++|.+.. . . ..++..++++++.+...+|
T Consensus 715 ----~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 715 ----ADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp ----GGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----hhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2355556666665543 1 1 3477889999999999998
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.90 E-value=2.7e-21 Score=244.83 Aligned_cols=417 Identities=15% Similarity=0.119 Sum_probs=310.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHH
Q psy10461 915 ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILW 993 (1359)
Q Consensus 915 es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~ 993 (1359)
.+|.+|+.|+.+|..++..+|.. +.+.++..+...+++..... +.++.+||.+++.++..+.+|+.++++.+..
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~~-----~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~ 407 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQ 407 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 56889999999999999988754 22345555555666654444 7888999999999988888999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHH
Q psy10461 994 RLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLP 1073 (1359)
Q Consensus 994 LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP 1073 (1359)
+++|+++.||.+|++++++++..+........+..+++.|++.|.|..++|+.+++.++..+++..+.. +.|++..+++
T Consensus 408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~ 486 (852)
T 4fdd_A 408 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILD 486 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHH
Confidence 999999999999999999999988643334677889999999999889999999999999999988754 6777788888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch---
Q psy10461 1074 RLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE----WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--- 1146 (1359)
Q Consensus 1074 ~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE----~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe--- 1146 (1359)
.+..++++.+.+....++++++.++......+...+ +|+.+......++|....+| .++++++.|++.+|..
T Consensus 487 ~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 487 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHH
Confidence 888888877777778889999999874333222211 22222222234556666675 7899999999999873
Q ss_pred ---hHHHHHHHhhh-----------------cccchhHHHHHHHHHHHhhhcCcc--------ccHHHHHHhcCCCCchh
Q psy10461 1147 ---DVLATLLNNLK-----------------VQERQNRVCTTVAIAIVAETCSPF--------TVLPALMNEYRVPELNV 1198 (1359)
Q Consensus 1147 ---dVlp~LL~~Lk-----------------~qe~~VRv~ta~AIg~LAea~gP~--------~VLPaLLnlLkDpE~nV 1198 (1359)
.+++.+++.++ ..+..+|.++..+++.++..+|.. .+++.++..+.|+.++|
T Consensus 566 ~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~v 645 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhH
Confidence 22332333322 124568999999999999888743 58999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccccc--
Q psy10461 1199 QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE-- 1276 (1359)
Q Consensus 1199 R~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~E-- 1276 (1359)
|..++.+++.++..+|..+..|+..++|.+.+.+.+.+..+|+.|+.+++.++..+.. ....-+..+++.+++.+..
T Consensus 646 r~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 646 RQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYIPMVLHQLVEIINRPN 724 (852)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999888889999999999999855421 1222233444455554433
Q ss_pred CChHHHHHHHHHHHHHHHhhchHHH---HHhHhhhhcccc-----ccchhhHHHHHHhhhhccccchhhccc
Q psy10461 1277 TSPHLVQAFMDAVEGLRVALGPVRI---LQYVLQGLFHPA-----RKVRDVYWKIYNSLYIGGQDALISAYP 1340 (1359)
Q Consensus 1277 tsp~Vi~~ileaLeaLr~aLG~~~l---l~~vLpgLfhpA-----~kvrd~~WRvyn~~y~~~~~Alv~~~P 1340 (1359)
....++.+++.++..+... +++.+ ++.+++.+..-- ..-++...+-...+.-++..++++.++
T Consensus 725 ~~~~~~~~a~~~igrl~~~-~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~ 795 (852)
T 4fdd_A 725 TPKTLLENTAITIGRLGYV-CPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFI 795 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHH-CHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred CCchHHHHHHHHHHHHHHh-CHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 2446888899999998877 55443 344444332211 112445555555666667777776665
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.90 E-value=1.5e-21 Score=247.16 Aligned_cols=427 Identities=14% Similarity=0.184 Sum_probs=314.8
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
..+-..|+..|.|++..+|..++.++..|+...++..|++ +++.++..+++..... +.++.+++.+++..+..+
T Consensus 89 ~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~-----ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 89 DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD-----LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTT-----HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 4567778888999999999999999999999878877764 6777777777655444 678888999999887643
Q ss_pred -----ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q psy10461 981 -----KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI 1055 (1359)
Q Consensus 981 -----kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aI 1055 (1359)
..++..+++.+...++|.++.||.+|+.+++.+....... ....+..+++.|+..+.|..++++..++.+|..+
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~-~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH-HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999998776433211 1234556778888888898999999999999999
Q ss_pred HHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--CCchhhHHHHHHHHHHHHHH-----------H
Q psy10461 1056 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG--PEYVSAREWMRICFELLELL-----------K 1122 (1359)
Q Consensus 1056 a~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g--~e~v~~kE~mrIc~eLLelL-----------k 1122 (1359)
+...+ +.+.+++..+++.+..+++|..+.||..+++.+..+++.. ..++.+. +.+++..+++.+ .
T Consensus 243 ~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~-~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 243 LEVRM-DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH-LPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HHHCH-HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT-HHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred HHhCH-HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHcCCcHhHHHHhcC
Confidence 88653 2244556677777777889999999999999999987632 1111111 223333334443 2
Q ss_pred h-----------hHHHHHHHHHHHHHHHHHHhCch---hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc----c--c
Q psy10461 1123 A-----------HKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----F--T 1182 (1359)
Q Consensus 1123 D-----------~~~sVR~AAv~tLg~IAk~~Gpe---dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP----~--~ 1182 (1359)
| ..++||++|..+|+.++..+|.. .+++.+.+.+.+.++.+|.+++.++|.+++.++. + .
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3 23468999999999999998742 2344455556677888999999999999998853 2 7
Q ss_pred cHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhh-chhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchh
Q psy10461 1183 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM-GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED 1261 (1359)
Q Consensus 1183 VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~-~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Ed 1261 (1359)
++|.+++.++|+.+.||..++++|+.+++.++.. ...|+..++|.|...+.|.+..||..|+.++..++-.+..
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~----- 475 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT----- 475 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-----
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH-----
Confidence 9999999999999999999999999999988753 4668899999999999999999999999999998744332
Q ss_pred HHhhhHHhhhcccc----cCChHHHHHHHHHHHHHHHhhchHH----HHHhHhhhhcc-------ccccchhhHHHHHHh
Q psy10461 1262 ALTHLLNYVWPNIF----ETSPHLVQAFMDAVEGLRVALGPVR----ILQYVLQGLFH-------PARKVRDVYWKIYNS 1326 (1359)
Q Consensus 1262 aliHlLnlvlPnI~----Etsp~Vi~~ileaLeaLr~aLG~~~----ll~~vLpgLfh-------pA~kvrd~~WRvyn~ 1326 (1359)
.+..+++.+++.+. ....+....+++++..+..++|... +++.++|.+++ ..+.++ ..-+....
T Consensus 476 ~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~ 554 (852)
T 4fdd_A 476 ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSS 554 (852)
T ss_dssp GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHH
Confidence 13333444444332 2334444568899999998888744 77788887773 222222 22333334
Q ss_pred hhhccccchhhccccc
Q psy10461 1327 LYIGGQDALISAYPRI 1342 (1359)
Q Consensus 1327 ~y~~~~~Alv~~~P~l 1342 (1359)
+...-...++||.|.+
T Consensus 555 i~~~~g~~~~~~~~~i 570 (852)
T 4fdd_A 555 VATALQSGFLPYCEPV 570 (852)
T ss_dssp HHHHHGGGGHHHHHHH
T ss_pred HHHHHhHhHHHHHHHH
Confidence 4444456788887763
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.87 E-value=4.6e-20 Score=242.34 Aligned_cols=432 Identities=13% Similarity=0.174 Sum_probs=309.5
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccc----hhhhHHHHHHHHHHHhhcc-CchhH-HHHHHHHHHHHhh
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAAD----IDSRLEEQLIDGILYAFQE-QTTED-VVMLNGFGTIVNQ 975 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~----l~~~L~~~Lld~LLplLqd-~~~eD-~v~lkaLg~Lae~ 975 (1359)
+.+++.|+..+.|++..+|..|+.+|..++..+++.. ......+.++..++..+.+ ...+. ..++.+|+.+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999998752 1122233566666666664 32333 6778889999998
Q ss_pred cccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccC-hHHHHHHHHHHHH
Q psy10461 976 LGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEY-PEVLGSILGALKA 1054 (1359)
Q Consensus 976 Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~-pEVl~siL~AL~a 1054 (1359)
.|..+.||+..+++.+...+.|+++.||.+|+.+++.++..++. .++..+++.|++.|.+.. ++++..++.+++.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~----~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999987652 345566777777764432 3556667899999
Q ss_pred HHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHH-------------
Q psy10461 1055 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL------------- 1121 (1359)
Q Consensus 1055 Ia~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelL------------- 1121 (1359)
++...|. .+.+++.+++|.+...++|.++.||+.++.+++.++..+.+.+.+. +..+...++..+
T Consensus 241 l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-l~~li~~ll~~l~~d~~~~~~~d~~ 318 (1230)
T 1u6g_C 241 ISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPH-VSTIINICLKYLTYDPNYNYDDEDE 318 (1230)
T ss_dssp HHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHH-HHHHHHHHTTCCCCC----------
T ss_pred HHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHh-HHHHHHHHHHHhCCCCCCCCccccc
Confidence 9998875 4778889999999999999999999999999999999766543221 111222111111
Q ss_pred ------------------------HhhHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHhhhcccchhHHHHHHHH
Q psy10461 1122 ------------------------KAHKKAIRRATVNTFGYIAKAIGP------HDVLATLLNNLKVQERQNRVCTTVAI 1171 (1359)
Q Consensus 1122 ------------------------kD~~~sVR~AAv~tLg~IAk~~Gp------edVlp~LL~~Lk~qe~~VRv~ta~AI 1171 (1359)
.|..+.||++|+.+|+.++...+. +.+++.++..++..+..+|.+++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAY 398 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 112357999999999999987653 13455566666667778999999888
Q ss_pred HHHhhhcCc-------------------------cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHH
Q psy10461 1172 AIVAETCSP-------------------------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP 1226 (1359)
Q Consensus 1172 g~LAea~gP-------------------------~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlP 1226 (1359)
+.+...++. ..++|.+++.++|++..||.+++.+|+.+++.++....+|+..++|
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 887765432 1578888888999999999999999999999887666789999999
Q ss_pred HHHHHHhccCh--HHHHHHHHHHHHHHhhhcCCCch---hHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhch---
Q psy10461 1227 LLEDALMDRDL--VHRQTACATIKHMALGVYGFGCE---DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP--- 1298 (1359)
Q Consensus 1227 lLedaL~D~D~--~VRqtA~saIk~LAl~~~glG~E---daliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~--- 1298 (1359)
.+.+++.|... .+|..++..+..+. ...|.+ ..+..+++.++..+.+.+..|+..++.++..+..++|.
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~---~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 555 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVIL---CNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHH---HSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHH---HhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999864 67766666666654 333432 23445556666666667777887888999999988886
Q ss_pred ------HHHHHhHhhhhcc------ccccchhhHHHHHHhhhhccccchhhccccc
Q psy10461 1299 ------VRILQYVLQGLFH------PARKVRDVYWKIYNSLYIGGQDALISAYPRI 1342 (1359)
Q Consensus 1299 ------~~ll~~vLpgLfh------pA~kvrd~~WRvyn~~y~~~~~Alv~~~P~l 1342 (1359)
..+++.++|.++. ....+|...-+....+.-...+.+.+|+|.+
T Consensus 556 ~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~ 611 (1230)
T 1u6g_C 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT 611 (1230)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 2344555555432 2223454444444444444445555665543
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.86 E-value=1e-19 Score=238.98 Aligned_cols=424 Identities=10% Similarity=0.114 Sum_probs=303.4
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-hH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-ED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
..++..|+..|.|++..||..|+.+|..++...+..... .+++.++..+.+... .. ..++.+++.++...|..
T Consensus 174 ~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~-----~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~ 248 (1230)
T 1u6g_C 174 PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV-----DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 248 (1230)
T ss_dssp HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CT-----THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH
Confidence 457888889999999999999999999999877765322 355566655554322 22 56788999999999998
Q ss_pred cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHH--------------------------
Q psy10461 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVL-------------------------- 1033 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iL-------------------------- 1033 (1359)
+++|+.++++.+...++|+++.||..++++++.++...+... ..++..+++.+
T Consensus 249 ~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 249 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 999999999999999999999999999999998887543210 12233333333
Q ss_pred ----------------------------------------------------HHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 1034 ----------------------------------------------------YEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 1034 ----------------------------------------------------le~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
...++|...+|+..++.++..++..+|.
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 407 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRP 407 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred cccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcc
Confidence 3333444455555555666666555442
Q ss_pred C------------------CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh
Q psy10461 1062 T------------------KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1123 (1359)
Q Consensus 1062 ~------------------~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD 1123 (1359)
. .+.+.+..++|.+...++|.+|++|.+++.+++.++..+...+... +.+++..++..|+|
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~-l~~ll~~l~~~L~d 486 (1230)
T 1u6g_C 408 VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH-IPVLVPGIIFSLND 486 (1230)
T ss_dssp C------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHTTC
T ss_pred ccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH-HHHHHHHHHHHHcC
Confidence 0 0011223344444445899999999999999999998776666543 66688888899998
Q ss_pred hH--HHHHHHHHHHHHHHHHHhCchh-------HHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc-----------c--
Q psy10461 1124 HK--KAIRRATVNTFGYIAKAIGPHD-------VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-----------F-- 1181 (1359)
Q Consensus 1124 ~~--~sVR~AAv~tLg~IAk~~Gped-------Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP-----------~-- 1181 (1359)
.. ..+|..++..++.+.+..|++. +++.|+..+...++.+|..+..+++.+++.+++ +
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 566 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 566 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 75 4899999999999998888764 455556656555555676677888888888775 2
Q ss_pred ccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCc
Q psy10461 1182 TVLPALMNEY--RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC 1259 (1359)
Q Consensus 1182 ~VLPaLLnlL--kDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~ 1259 (1359)
.++|.+++.+ .|++++||.+++.+|+.+++.+|.....|+..++|.|.+.+.++. .|..++.++..++......+.
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~--~r~~~~~al~~i~~~~~~~~~ 644 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDL 644 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHhCccccch
Confidence 7999999999 788899999999999999999999888899999999988887654 677777888887643333345
Q ss_pred hhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchHH-------HHHhHhhhhccccccchhhHHHHHHhhhhccc
Q psy10461 1260 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR-------ILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQ 1332 (1359)
Q Consensus 1260 EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~-------ll~~vLpgLfhpA~kvrd~~WRvyn~~y~~~~ 1332 (1359)
+..+.++++.+...+.+.+..++.+++.++..+....|..+ ++..++|.+.+.-.++....|.+...++-...
T Consensus 645 ~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~ 724 (1230)
T 1u6g_C 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence 55666777777777778889999999999999999887532 22233333323233355566666666654443
Q ss_pred cc
Q psy10461 1333 DA 1334 (1359)
Q Consensus 1333 ~A 1334 (1359)
..
T Consensus 725 ~~ 726 (1230)
T 1u6g_C 725 SS 726 (1230)
T ss_dssp GG
T ss_pred hh
Confidence 33
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.86 E-value=4.6e-19 Score=222.12 Aligned_cols=433 Identities=13% Similarity=0.115 Sum_probs=297.5
Q ss_pred hHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 903 EIINRVVDDLKDE--NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 903 eiI~~Ll~~LKDe--s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
.++..|+..++|+ ++.+|..|++++..++..++...-.......++..+...+++...+. ..++.+|+.++...+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 3566677778877 79999999999999887555321111111124555545555444333 67889999999999998
Q ss_pred cccchH-hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh------------------hh--HHhHHHHHHHHHHHHhc
Q psy10461 980 VKPYLP-QICGTILWRLNNKSAKVRQQAADLISRIAVVMKT------------------CQ--EEKLMGHLGVVLYEYLG 1038 (1359)
Q Consensus 980 ikPyl~-qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~------------------~~--e~~lL~~Ll~iLle~L~ 1038 (1359)
+.+|+. .+++.+...++|.+..||..|.+++..++..... +. ....+..+++.+++.|.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 999999 9999999999999999999999999999875310 00 01245677888888874
Q ss_pred -------ccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-CchhhHHH
Q psy10461 1039 -------EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGP-EYVSAREW 1110 (1359)
Q Consensus 1039 -------De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~-e~v~~kE~ 1110 (1359)
++...++..+..+++.++...|.. .+..++|.+...++|.+|++|.+++.+++.++..+. +.+... +
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~ 406 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCEDD----IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V 406 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCcHh----hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-H
Confidence 234467778889999999888732 255677777778899999999999999999987544 333322 3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC---
Q psy10461 1111 MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--- 1179 (1359)
Q Consensus 1111 mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g--- 1179 (1359)
..++..++..|+|.+..||.+|+.+|+.+++.+++ +.+++.|+..++.. ..+|..++.+++.+++.++
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~ 485 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAA 485 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcc
Confidence 44566667888999999999999999999998764 24566667666653 5688888888888877643
Q ss_pred ---------------cc--ccHHHHHHhcCCCC---chhHH---------------------------------------
Q psy10461 1180 ---------------PF--TVLPALMNEYRVPE---LNVQN--------------------------------------- 1200 (1359)
Q Consensus 1180 ---------------P~--~VLPaLLnlLkDpE---~nVR~--------------------------------------- 1200 (1359)
|+ .++|.|++.+++.+ .++|.
T Consensus 486 ~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 565 (876)
T 1qgr_A 486 DVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQME 565 (876)
T ss_dssp SCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 78888888887652 34544
Q ss_pred -----------------HHHHHHHHHHHHhh-hhchhhHHhHHHHHHHHHhccC--hHHHHHHHHHHHHHHhhhcCCCch
Q psy10461 1201 -----------------GVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCE 1260 (1359)
Q Consensus 1201 -----------------~VlkaLs~Iae~IG-~~~kdYL~~VlPlLedaL~D~D--~~VRqtA~saIk~LAl~~~glG~E 1260 (1359)
.++.+++.++..+| .....|+..++|.|..++.+.. ..+|..++.++..++..+. -.+.
T Consensus 566 ~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~-~~~~ 644 (876)
T 1qgr_A 566 SHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG-GEFL 644 (876)
T ss_dssp TSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG-GGGG
T ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH-hhHH
Confidence 44455555555555 5556677888888888887664 3678778888888764321 1222
Q ss_pred hHHhhhHHhhhcccccC-ChHHHHHHHHHHHHHHHhhchH------HHHHhHhhhhcc--ccccchhhHHHHHHhhhhcc
Q psy10461 1261 DALTHLLNYVWPNIFET-SPHLVQAFMDAVEGLRVALGPV------RILQYVLQGLFH--PARKVRDVYWKIYNSLYIGG 1331 (1359)
Q Consensus 1261 daliHlLnlvlPnI~Et-sp~Vi~~ileaLeaLr~aLG~~------~ll~~vLpgLfh--pA~kvrd~~WRvyn~~y~~~ 1331 (1359)
.-+..+++.+.+.+.+. ++.++..++.++..+..++|.. .+++.++..+-. ....++...-.....+....
T Consensus 645 ~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 724 (876)
T 1qgr_A 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI 724 (876)
T ss_dssp GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh
Confidence 33344555555555555 7889999999999999998863 244444444433 22346666555555555444
Q ss_pred ccchhhccccc
Q psy10461 1332 QDALISAYPRI 1342 (1359)
Q Consensus 1332 ~~Alv~~~P~l 1342 (1359)
...+.+|+|.+
T Consensus 725 g~~~~~~l~~~ 735 (876)
T 1qgr_A 725 GGEFKKYLEVV 735 (876)
T ss_dssp GGGGGGGHHHH
T ss_pred chhHHHHHHHH
Confidence 45577776654
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.85 E-value=4.7e-19 Score=222.08 Aligned_cols=390 Identities=12% Similarity=0.070 Sum_probs=289.2
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc---
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG--- 977 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg--- 977 (1359)
..+++.|+..++|+++.||..|+.++.+++..+++..........++..++..+.+. ... ..++.+|+.++..++
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~ 485 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAA 485 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcc
Confidence 346888889999999999999999999999987764212233446778888888774 333 567788888888875
Q ss_pred -----------cccccchHhHHHHHHHhhcCC---CHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc----
Q psy10461 978 -----------KRVKPYLPQICGTILWRLNNK---SAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE---- 1039 (1359)
Q Consensus 978 -----------~~ikPyl~qILpiIl~LL~De---s~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D---- 1039 (1359)
..+.||+..|++.+...+.+. +..+|..+.++++.++..++.. ...++..+++.+++.+.+
T Consensus 486 ~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~ 564 (876)
T 1qgr_A 486 DVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKTTLVIMERLQQVLQM 564 (876)
T ss_dssp SCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999875 4689999999999999887642 245677788888777643
Q ss_pred -------c----ChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhCCCchh
Q psy10461 1040 -------E----YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGRIADRGPEYVS 1106 (1359)
Q Consensus 1040 -------e----~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~--~rVR~AAielIg~IA~~g~e~v~ 1106 (1359)
. ++++...++.++..++..+|...+.|+...++|.+..++++.+ +.||..++.+++.++......+.
T Consensus 565 ~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 644 (876)
T 1qgr_A 565 ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644 (876)
T ss_dssp TTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH
Confidence 1 1556677889999999888722355677788888888888765 58999999999999885333222
Q ss_pred hHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHhhhc--ccchhHHHHHHHHHHHhhh
Q psy10461 1107 AREWMRICFELLELLKAH-KKAIRRATVNTFGYIAKAIGP------HDVLATLLNNLKV--QERQNRVCTTVAIAIVAET 1177 (1359)
Q Consensus 1107 ~kE~mrIc~eLLelLkD~-~~sVR~AAv~tLg~IAk~~Gp------edVlp~LL~~Lk~--qe~~VRv~ta~AIg~LAea 1177 (1359)
+. +..++..++..|.+. +..||.+|+.+++.|+..+|. +.+++.|++.++. .+..+|.+++.+++.++..
T Consensus 645 ~~-~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 645 KY-MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp GG-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence 21 223444556778887 889999999999999998875 3566667777776 3457999999999999998
Q ss_pred cCcc------ccHHHHHHhcCCCC-----------chhHHHHHHHHHHHHHHhhh----------hchhhHHhHHHHHHH
Q psy10461 1178 CSPF------TVLPALMNEYRVPE-----------LNVQNGVLKALSFLFEYIGE----------MGKDYIYAVTPLLED 1230 (1359)
Q Consensus 1178 ~gP~------~VLPaLLnlLkDpE-----------~nVR~~VlkaLs~Iae~IG~----------~~kdYL~~VlPlLed 1230 (1359)
+|+. .++|.+++.+++.. .++|..+++++..++..+|. ...+|++.+++.+..
T Consensus 724 ~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 803 (876)
T 1qgr_A 724 IGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDH 803 (876)
T ss_dssp HGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHH
Confidence 8764 68888888887542 37999999999999999875 356799999999988
Q ss_pred HHhcc--ChHHHHHHHHHHHHHHhhhcCCCchhH-HhhhHHhhhc-ccccCChHHHHHHHHHHHHHHH
Q psy10461 1231 ALMDR--DLVHRQTACATIKHMALGVYGFGCEDA-LTHLLNYVWP-NIFETSPHLVQAFMDAVEGLRV 1294 (1359)
Q Consensus 1231 aL~D~--D~~VRqtA~saIk~LAl~~~glG~Eda-liHlLnlvlP-nI~Etsp~Vi~~ileaLeaLr~ 1294 (1359)
+..|+ +..+|..|+.++..|+..+..-....- ..++++.++. .+.+.++.++..+..+++.++.
T Consensus 804 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 804 IAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 88887 789999999999998754421000111 1123333443 4446788999988888887764
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.81 E-value=7.7e-18 Score=195.04 Aligned_cols=322 Identities=16% Similarity=0.161 Sum_probs=248.5
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCcc-chhhhHHHHHHHHHHHhhccC--chhH-HHHHHHHHHHHhhc-
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAA-DIDSRLEEQLIDGILYAFQEQ--TTED-VVMLNGFGTIVNQL- 976 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe-~l~~~L~~~Lld~LLplLqd~--~~eD-~v~lkaLg~Lae~L- 976 (1359)
+.+-..|+..|.+++..+ ..++.+|..|+...++. .|. .++..++..+++. .... +.++.+|+.+++..
T Consensus 89 ~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~-----~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 89 REVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP-----ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp HHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT-----THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 445667888899999999 99999999999987774 564 3677777777765 3333 68888999999987
Q ss_pred ccccccchHhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhhhhhH-HhHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy10461 977 GKRVKPYLPQICGTILWRLNNK--SAKVRQQAADLISRIAVVMKTCQE-EKLMGHLGVVLYEYLGEEYPEVLGSILGALK 1053 (1359)
Q Consensus 977 g~~ikPyl~qILpiIl~LL~De--s~~VR~aAAe~Is~LA~vl~~~~e-~~lL~~Ll~iLle~L~De~pEVl~siL~AL~ 1053 (1359)
+..+.+|++.+++.+...++|. ++.||.+|+.+++.+...+..... ......+++.+.+.+.+..++++..++.+|.
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~ 242 (462)
T 1ibr_B 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (462)
T ss_dssp GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 6667899999999999999998 799999999999987665542111 1122334666667777888899999999999
Q ss_pred HHHHHhCCCCCCCchh-chHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------------------CCchhhHHHH
Q psy10461 1054 AIVNVIGMTKMTPPIK-DLLPRLTPILKNRHEKVQENCIDLVGRIADRG---------------------PEYVSAREWM 1111 (1359)
Q Consensus 1054 aIa~vlG~~~lsp~l~-~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g---------------------~e~v~~kE~m 1111 (1359)
.++...+ +.+.+++. .+++.+...+++.++.||..+++.+..++... ..++.. .+.
T Consensus 243 ~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 320 (462)
T 1ibr_B 243 KIMSLYY-QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG-ALQ 320 (462)
T ss_dssp HHHHHCG-GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHH-HHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHH-Hhh
Confidence 9998865 33566677 88888888889999999999999999987631 111111 122
Q ss_pred HHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHhCchhHHH----HHHHhhhcccchhHHHHHHHHHHHhhhcCc
Q psy10461 1112 RICFELLELLKA-------HKKAIRRATVNTFGYIAKAIGPHDVLA----TLLNNLKVQERQNRVCTTVAIAIVAETCSP 1180 (1359)
Q Consensus 1112 rIc~eLLelLkD-------~~~sVR~AAv~tLg~IAk~~GpedVlp----~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP 1180 (1359)
.++..++..|.+ ..+++|.+|..+|+.++..+| +.+++ .+...+++.++.+|.++..++|.+++.|.+
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 344444555532 346899999999999999998 45444 445566778888999999999999998863
Q ss_pred -------cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhc--hhhHHhHHHHHHHHH
Q psy10461 1181 -------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG--KDYIYAVTPLLEDAL 1232 (1359)
Q Consensus 1181 -------~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~--kdYL~~VlPlLedaL 1232 (1359)
..++|.+++.|+|+.+.||..+|++|+.+++.++... ..|+..++|.|...|
T Consensus 400 ~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp TTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 2799999999999999999999999999999998753 578888888766544
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=7.2e-17 Score=186.94 Aligned_cols=347 Identities=13% Similarity=0.089 Sum_probs=248.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHH-HHHHHHHHhhccC-chhH-HHHHHHHHHHHhhcccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEE-QLIDGILYAFQEQ-TTED-VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~-~Lld~LLplLqd~-~~eD-~v~lkaLg~Lae~Lg~~ik 981 (1359)
++.|+..++++++.+|..|+..|.+++..-....+...+.. .++..|+.++++. ..+. ..++.+++.++..-....+
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 67788888999999999999999998762222212211111 3556666666665 3333 5566677777653322222
Q ss_pred cc-hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHH
Q psy10461 982 PY-LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM-GHLGVVLYEYLGE-EYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 982 Py-l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL-~~Ll~iLle~L~D-e~pEVl~siL~AL~aIa~v 1058 (1359)
.. -..+++.+..+++++++.||..|+.++++|+..-..+.. .++ ...++.|...|.+ ..++++..++.+|..++..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH-HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 11 146899999999999999999999999999864332211 122 2467788888874 5788999999999998864
Q ss_pred hCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10461 1059 IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 1138 (1359)
Q Consensus 1059 lG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~ 1138 (1359)
.+...-.......+|.+..++++.++.||..++.+|..++....+.....-...++..++.+|.+....||..|+.+|+.
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 32111112246799999999999999999999999999976332111111011245566788888889999999999999
Q ss_pred HHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc-------cccHHHHHHhcCCCCchhHHHHHH
Q psy10461 1139 IAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLK 1204 (1359)
Q Consensus 1139 IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP-------~~VLPaLLnlLkDpE~nVR~~Vlk 1204 (1359)
|+...+. ..+++.|+..++..+..+|..++.+++.++..+.. ..++|.|++.|+++++.||..+++
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 9864211 14677888888887778999999999999864321 379999999999999999999999
Q ss_pred HHHHHHHHhhhh-chhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q psy10461 1205 ALSFLFEYIGEM-GKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1205 aLs~Iae~IG~~-~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LAl 1252 (1359)
+|+.++....+. ...++ ..++|.|.+++.+.+..+|..++.++..++.
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999988753322 22223 3588999999999999999988988888764
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.75 E-value=6e-16 Score=179.17 Aligned_cols=391 Identities=11% Similarity=0.039 Sum_probs=279.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCc--hhH-HHHHHHHHHHHhhc-----
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT--TED-VVMLNGFGTIVNQL----- 976 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~--~eD-~v~lkaLg~Lae~L----- 976 (1359)
+..++..+.+.+..+|+.|-+.|..+...--+ .....++..+.+.+ .+. ..+...|..++..-
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~---------~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLP---------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChH---------HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 34566677789999999999999986652111 24455566666542 222 44555555554221
Q ss_pred -------ccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc--ChHHHHH
Q psy10461 977 -------GKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE--YPEVLGS 1047 (1359)
Q Consensus 977 -------g~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De--~pEVl~s 1047 (1359)
...-......|...|+..+.++++.| .+++.+|+.|+....+ ......+++.|++.+.+. ++.++..
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~---~~~w~~ll~~L~~~l~~~~~~~~~r~~ 149 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKES 149 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcc---ccccHHHHHHHHHHhccCCCCHHHHHH
Confidence 11111234567777888899999999 9999999999987542 123456888888888877 7888888
Q ss_pred HHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCCCchhhHHHHH-HHHHHHHHHHhh
Q psy10461 1048 ILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR--HEKVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLELLKAH 1124 (1359)
Q Consensus 1048 iL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr--~~rVR~AAielIg~IA~~g~e~v~~kE~mr-Ic~eLLelLkD~ 1124 (1359)
++.+|..++.....+.+.+....+++.+...++|. ++.||.+++++++.+.....+......... +...+...+.+.
T Consensus 150 al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (462)
T 1ibr_B 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (462)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 99999999887643445566677888888888888 799999999999987643221111110011 122223456677
Q ss_pred HHHHHHHHHHHHHHHHHHhCc------h-hHHHHHHHhhhcccchhHHHHHHHHHHHhhhc-------------------
Q psy10461 1125 KKAIRRATVNTFGYIAKAIGP------H-DVLATLLNNLKVQERQNRVCTTVAIAIVAETC------------------- 1178 (1359)
Q Consensus 1125 ~~sVR~AAv~tLg~IAk~~Gp------e-dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~------------------- 1178 (1359)
...||.+++.+|+.++..++. . .+++.++..++..+..+|..+...++.+++..
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence 889999999999999987654 2 66776777777777778998888888877642
Q ss_pred --Cc------cccHHHHHHhcCC-------CCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHH
Q psy10461 1179 --SP------FTVLPALMNEYRV-------PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1243 (1359)
Q Consensus 1179 --gP------~~VLPaLLnlLkD-------pE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA 1243 (1359)
.. ..++|.+++.+.+ .+.++|..++.+|+.++..+| ...+..++|.+...+.|.+-.+|.+|
T Consensus 310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT---TTHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 11 2588888888853 346899999999999999998 35668899999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchH----HHHHhHhhhhcc
Q psy10461 1244 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV----RILQYVLQGLFH 1311 (1359)
Q Consensus 1244 ~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~----~ll~~vLpgLfh 1311 (1359)
+.++..++-++..-.....+..+++.+.+.+.+.++.|+.++..+++.++..+|.. ..++.++++|++
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 99998887544311122334567778888888899999999999999999999874 356777777764
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.75 E-value=1.4e-16 Score=191.21 Aligned_cols=350 Identities=13% Similarity=0.088 Sum_probs=251.0
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccC-chhH-HHHHHHHHHHHhhccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ-TTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~-~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
..+..|+..|+++++.+|..|+..|.+++.......+..-+...++..|+.++.+. ..+. ..++.+|+.++.......
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34788889999999999999999999987643222222111123556666677665 3333 456666777665332211
Q ss_pred ccc-hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 981 KPY-LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 981 kPy-l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
... -..+++.|..++++.++.||..|+++|++|+..-..+...-.-...++.|+..|.+..++++..++++|..++..-
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 111 1456888889999999999999999999998543222221122356788888888888899999999999988643
Q ss_pred CCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10461 1060 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 1139 (1359)
Q Consensus 1060 G~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~I 1139 (1359)
+...-.......+|.|+.++.+.++.||..++.+|+.++....+.....--..++..|+.+|.+....||..|+.+|+.|
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 11111122457899999999999999999999999999864332211110112455667888888899999999999999
Q ss_pred HHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc-------cccHHHHHHhcCCCCchhHHHHHHH
Q psy10461 1140 AKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKA 1205 (1359)
Q Consensus 1140 Ak~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP-------~~VLPaLLnlLkDpE~nVR~~Vlka 1205 (1359)
+..-+. ..+++.|+..|+..+..+|..++.+++.++..+.. ..++|.|++.|++++..||..++++
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 853111 24677888888888888999999999999864321 2699999999999999999999999
Q ss_pred HHHHHHHhhh--hchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q psy10461 1206 LSFLFEYIGE--MGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1206 Ls~Iae~IG~--~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl 1252 (1359)
|+.++...++ ....++ ..++|.|.+++.+.+..+|..++.+|..|..
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999876543 222333 3588899999999999999988988888763
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.68 E-value=6.1e-15 Score=176.45 Aligned_cols=348 Identities=14% Similarity=0.135 Sum_probs=249.0
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCc-hhH-HHHHHHHHHHHhhccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT-TED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~-~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
+-++.|+..|+++++.+|..|+..|.+++..-.......-+..-++..|+.++.+.. .+. ..++.+|+.++.......
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347888999999999999999999999977443222222122235566677777654 333 566777888776433222
Q ss_pred ccc-hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHH
Q psy10461 981 KPY-LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 981 kPy-l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEVl~siL~AL~aIa~v 1058 (1359)
... -..+++.|..++.+.++.||..|+++|++|+..-..+...-.-...++.|+..| .+..++++..++++|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 111 135889999999999999999999999999864332211111123677888888 566788888999999988764
Q ss_pred hCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10461 1059 IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 1138 (1359)
Q Consensus 1059 lG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~ 1138 (1359)
.... ........+|.|+.++.+.++.|+..++.+|+.++....+.....--..++..|+.+|.+....||..|+.+|+.
T Consensus 234 ~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 234 KPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 2111 111235689999999999999999999999999985332111110001245566788998889999999999999
Q ss_pred HHHHhCc-------hhHHHHHHHhhhcc-cchhHHHHHHHHHHHhhhcCc-------cccHHHHHHhcCCCCchhHHHHH
Q psy10461 1139 IAKAIGP-------HDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVL 1203 (1359)
Q Consensus 1139 IAk~~Gp-------edVlp~LL~~Lk~q-e~~VRv~ta~AIg~LAea~gP-------~~VLPaLLnlLkDpE~nVR~~Vl 1203 (1359)
|+..-.. ..+++.|+..|+.. +..+|..++.+++.++..... ..++|.|+.+|++.+..||..++
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 392 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9862111 24577888888877 777899999999998853211 27899999999999999999999
Q ss_pred HHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1204 KALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1204 kaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
++|+.++....+....|+ ..+++.|.+++.+.+..++..++.+|..|.
T Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999998876433334444 467888888999999999988888888874
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.67 E-value=2.4e-15 Score=174.17 Aligned_cols=345 Identities=16% Similarity=0.099 Sum_probs=244.6
Q ss_pred hHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc
Q psy10461 903 EIINRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 903 eiI~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
.+++.|+..|+++ ++.+|..|+..|..++..- ++....-+...++..|+.++++...+. ..++.+|+.++..... .
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~-~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM-C 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-H
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH-H
Confidence 6789999999999 8999999999999988621 111111011235666777777655444 5677778887764322 1
Q ss_pred ccch--HhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy10461 981 KPYL--PQICGTILWRLNN-KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN 1057 (1359)
Q Consensus 981 kPyl--~qILpiIl~LL~D-es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~ 1057 (1359)
+.++ ..+++.+..++++ .+..||..|++++++|+....+......+...++.|...|.+.+++++..++.+|..++.
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 1111 3578888888885 799999999999999985431111123446688889999988888898888888888764
Q ss_pred HhCCCCCCC-chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10461 1058 VIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTF 1136 (1359)
Q Consensus 1058 vlG~~~lsp-~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tL 1136 (1359)
..... ... .....+|.++.++++.++.||..++.+|+.++..........--..++..++.+|.+....||..|+.+|
T Consensus 222 ~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 222 GPNDK-IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300 (450)
T ss_dssp SSHHH-HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCcHH-HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21000 000 0125889999999999999999999999999863321111000012455667888888899999999999
Q ss_pred HHHHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc--------cccHHHHHHhcCCCCchhHHH
Q psy10461 1137 GYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRVPELNVQNG 1201 (1359)
Q Consensus 1137 g~IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP--------~~VLPaLLnlLkDpE~nVR~~ 1201 (1359)
+.|+..-.. ..+++.|+..++..+..+|..++.+++.++....+ ..++|.|++.+++++..||..
T Consensus 301 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 380 (450)
T 2jdq_A 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQV 380 (450)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999852111 25677788888877778999999999999865433 269999999999999999999
Q ss_pred HHHHHHHHHHHhhhh-------chhhHHhH-----HHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1202 VLKALSFLFEYIGEM-------GKDYIYAV-----TPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1202 VlkaLs~Iae~IG~~-------~kdYL~~V-----lPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
++.+|..++...... ...|...+ ++.|..++.+.+..++..|..+|..+
T Consensus 381 a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 381 ALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999888765431 13455444 57788888888888888777777654
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.63 E-value=2.3e-14 Score=172.01 Aligned_cols=346 Identities=13% Similarity=0.084 Sum_probs=245.5
Q ss_pred HhHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
..+++.|+..|+++ ++.+|..|+.+|..++..- ++....-+....+..|+.++++...+. ..++.+|+.++......
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 34688999999997 8999999999999987621 110000001124556666676655444 66777788877543211
Q ss_pred cc-cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 980 VK-PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 980 ik-Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
-. -.-..+++.|..++.+.+..||..|+++|++|+..-...........+++.|...|.+.+++++..++.+|..++..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 10 11235788899999999999999999999999854311111334566788888999888899999888999888743
Q ss_pred hCCCCCCCch-hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10461 1059 IGMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG 1137 (1359)
Q Consensus 1059 lG~~~lsp~l-~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg 1137 (1359)
.... ..... ..++|.|+.++++.++.||..++.+|+.|+..........--..++..++.+|.+....||..|+.+|+
T Consensus 288 ~~~~-~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 288 PQEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp CHHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHH-HHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1100 00001 267899999999999999999999999998633211110000124455678899888999999999999
Q ss_pred HHHHHhCc--------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc--c--------ccHHHHHHhcCCCCchhH
Q psy10461 1138 YIAKAIGP--------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--F--------TVLPALMNEYRVPELNVQ 1199 (1359)
Q Consensus 1138 ~IAk~~Gp--------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP--~--------~VLPaLLnlLkDpE~nVR 1199 (1359)
.|+.. .+ ..+++.|+..|+..+..+|..++.+++.++....+ . .++|.|+.+|+++++.||
T Consensus 367 ~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99862 22 24567788888877778999999999999876554 2 699999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh-------chhhHH-----hHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1200 NGVLKALSFLFEYIGEM-------GKDYIY-----AVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1200 ~~VlkaLs~Iae~IG~~-------~kdYL~-----~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
..++++|..++...... ...|.. ..++.|+.++.+.+..++..|..+|..+
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999998888765431 122332 2477888888899999988777777664
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.55 E-value=2.3e-13 Score=162.88 Aligned_cols=344 Identities=14% Similarity=0.098 Sum_probs=243.2
Q ss_pred HhHHHHHhhhcCCCC-HHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDEN-EQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes-~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
..+++.|+..|++++ +.+|..|+.+|..++.. .++....-+..-.+..|+.++.+...+. ..++.+|+.++.....
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~- 193 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK- 193 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-
Confidence 346889999999887 99999999999999872 1221111111125566677777655444 6777788888754322
Q ss_pred cccch--HhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy10461 980 VKPYL--PQICGTILWRL-NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV 1056 (1359)
Q Consensus 980 ikPyl--~qILpiIl~LL-~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa 1056 (1359)
.+..+ ..+++.|..++ .+.+..||..|+++|++|+..-.. .........++.|...|.+..++++..++.+|..++
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 11122 24677888888 678999999999999999865321 113445678888999998888999999889988876
Q ss_pred HHhCCCCCCC-chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Q psy10461 1057 NVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH-KKAIRRATVN 1134 (1359)
Q Consensus 1057 ~vlG~~~lsp-~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~-~~sVR~AAv~ 1134 (1359)
...... ... .....+|.++.++++.++.||..++.+|+.|+..........--..++..|+.+|.+. ...||..|+.
T Consensus 273 ~~~~~~-~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~ 351 (528)
T 4b8j_A 273 DGTNDK-IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACW 351 (528)
T ss_dssp SSCHHH-HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred cCCHHH-HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHH
Confidence 321100 000 0124789999999999999999999999999863321111100012445567888888 8999999999
Q ss_pred HHHHHHHHhCch--------hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc--------cccHHHHHHhcCCCCchh
Q psy10461 1135 TFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRVPELNV 1198 (1359)
Q Consensus 1135 tLg~IAk~~Gpe--------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP--------~~VLPaLLnlLkDpE~nV 1198 (1359)
+|+.|+.. .++ .+++.|+..|+..+..+|..++.+++.++....+ ..+++.|+++|++++..|
T Consensus 352 ~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 430 (528)
T 4b8j_A 352 TISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 430 (528)
T ss_dssp HHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 99999862 221 4567788888877778999999999998876433 278999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh-------chhhHH-----hHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1199 QNGVLKALSFLFEYIGEM-------GKDYIY-----AVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1199 R~~VlkaLs~Iae~IG~~-------~kdYL~-----~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
+..++.+|..++...... ...|.. ..+..|+++..+.+..++..|..++..+
T Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 431 VTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999888765431 112322 2456677778888888888888777665
No 19
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-16 Score=129.99 Aligned_cols=45 Identities=82% Similarity=1.518 Sum_probs=41.1
Q ss_pred HHHHHHhhHHHhhhccCCCCChHHhhhcCCCCCeecCCCCCCCCC
Q psy10461 333 PEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYIPI 377 (1359)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 377 (1359)
|+|.++++|++|+++|||||||||||+|||+||+||+||++|+|+
T Consensus 3 p~~~~~~~~~~ei~~rnrpltDEeLD~~LP~GY~il~pP~~Y~pi 47 (47)
T 2fho_A 3 PEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPI 47 (47)
T ss_dssp CCCCCCCCCCCCCCCCCCCSCTTHHHHHSCTTEEECCCCTTCCCC
T ss_pred HHHhhhhhhhhccccccCCCCHHHHHHhCCCCCeecCCCCCCCCC
Confidence 344466799999999999999999999999999999999999995
No 20
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.54 E-value=6.4e-13 Score=160.06 Aligned_cols=345 Identities=14% Similarity=0.112 Sum_probs=228.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhccccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikP 982 (1359)
++.|+..+++++..++..|+..+.++.+.=....++.-+..-++..|+.+|+.....+ ..++.+|+.++..-.+..+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 6778899999999999999999999864211111111111123444555565443322 45566777776543322222
Q ss_pred ch-HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh-----HHHHHHHHHHHHHH
Q psy10461 983 YL-PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP-----EVLGSILGALKAIV 1056 (1359)
Q Consensus 983 yl-~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p-----EVl~siL~AL~aIa 1056 (1359)
.+ ...+|.|..+|++++..||..|+++|++|+..-..+...-.-...+++|...|..... ..+..++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 2478999999999999999999999999985433222211112346677777754332 34556666676665
Q ss_pred HHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy10461 1057 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTF 1136 (1359)
Q Consensus 1057 ~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tL 1136 (1359)
..-............+|.|..++++.++.|+..++.+|..++....+......-..++..|+.+|.+.+..|+..++.+|
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 43211100012356889999999999999999999999999863322111100112455667889988899999999999
Q ss_pred HHHHHHhCchh---------HHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-------ccccHHHHHHhcCCCCchhHH
Q psy10461 1137 GYIAKAIGPHD---------VLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQN 1200 (1359)
Q Consensus 1137 g~IAk~~Gped---------Vlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-------P~~VLPaLLnlLkDpE~nVR~ 1200 (1359)
+.|+.. .+. +++.|+..|++.+..+|..++.+++.|+.... ...++|.|+..|++.+..||.
T Consensus 299 ~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 299 GNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 998753 222 23344555666677789999999998874321 127999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1201 GVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1201 ~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
.++++|+.++.........|+ .-++|.|.++|...|..++..++.+|..|.
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999888764333222233 356778888999899888887777777764
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.52 E-value=2.3e-12 Score=155.57 Aligned_cols=348 Identities=14% Similarity=0.102 Sum_probs=229.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ik 981 (1359)
.++.++..+++++...+..|+..+.++...-....++.-+..-++..|+.+|+.....+ ..++.+|..++..-....+
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36778889999999999999999998764221111222111123444555555433222 4455667777654333221
Q ss_pred -cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCh-----HHHHHHHHHHHHH
Q psy10461 982 -PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP-----EVLGSILGALKAI 1055 (1359)
Q Consensus 982 -Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~p-----EVl~siL~AL~aI 1055 (1359)
-.-...+|.|..++.+++..||..|+++|++|+..-..+...-.-...+++|+..|..... ..+..+++++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 1123578999999999999999999999999985432222111112346677777754332 3455666666666
Q ss_pred HHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10461 1056 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1135 (1359)
Q Consensus 1056 a~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~t 1135 (1359)
+..-............+|.|..++.+.+..|+..++.+|..++....+.....--..++..|+.+|.+....|+..|+.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 54321110001135688999999999999999999999999986432211110001244556788988889999999999
Q ss_pred HHHHHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-------ccccHHHHHHhcCCCCchhHHH
Q psy10461 1136 FGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNG 1201 (1359)
Q Consensus 1136 Lg~IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-------P~~VLPaLLnlLkDpE~nVR~~ 1201 (1359)
|+.|+..-.. ..+++.|+..|++.+..+|..++.+++.|+.... ...++|.|+.+|++.+..||..
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 396 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA 396 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence 9999752111 1234556777777777899998999998875321 1279999999999999999999
Q ss_pred HHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1202 VLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1202 VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
++++|+.++.........|+ .-++|.|.++|...|..++..++.+|..|.
T Consensus 397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999888764332222233 346778888999889888887777777764
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.47 E-value=1.5e-12 Score=159.69 Aligned_cols=378 Identities=13% Similarity=0.081 Sum_probs=212.6
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPY 983 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPy 983 (1359)
+..|...|+|+++.+|..|++++..+ +... +.+.++..+..++.+..... ..++.+++.++...++.+..
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~----~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~- 158 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCI----RVDK----ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED- 158 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTC----CSGG----GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcC----ChHH----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-
Confidence 67788899999999999999888764 3332 33356666777777766665 67777888888855543321
Q ss_pred hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 984 l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
..+++.+..++.|+++.||..|+.+++.++..-.....-.+....+..|+..|.+..+-....++..+..+. ..
T Consensus 159 -~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~----~~- 232 (591)
T 2vgl_B 159 -QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN----PK- 232 (591)
T ss_dssp -HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC----CC-
T ss_pred -ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC----CC-
Confidence 368899999999999999999999999987643210000122234445555555545544444555443322 11
Q ss_pred CCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---CCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10461 1064 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG---PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1064 lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g---~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IA 1140 (1359)
-......+++.+.+++++.++.|+.+|+.++..++... .+.+... ..++...|+. |.+....||..|+.+|+.|+
T Consensus 233 ~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVT-LLSGEPEVQYVALRNINLIV 310 (591)
T ss_dssp SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHH-HTTSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHH-HhcCCccHHHHHHHHHHHHH
Confidence 01123567888888899999999999999999986522 2222210 1112222222 22344566666666666666
Q ss_pred HHhC------------------------------------chhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc--cc
Q psy10461 1141 KAIG------------------------------------PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FT 1182 (1359)
Q Consensus 1141 k~~G------------------------------------pedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP--~~ 1182 (1359)
...+ .+.++..|+..++..+..+|..++.+|+.+|..+.+ ..
T Consensus 311 ~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~ 390 (591)
T 2vgl_B 311 QKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER 390 (591)
T ss_dssp HHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH
Confidence 5421 122333333333333444555555555555554432 14
Q ss_pred cHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHh-ccChHHHHHHHHHHHHHHhhhcCCCchh
Q psy10461 1183 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCED 1261 (1359)
Q Consensus 1183 VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~-D~D~~VRqtA~saIk~LAl~~~glG~Ed 1261 (1359)
+++.|++.+++....|+..++.++..+........ ..+++.|.+.+. +.+..+|..++.+|...+-... +
T Consensus 391 ~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~-----~ 461 (591)
T 2vgl_B 391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY----ESIIATLCENLDSLDEPDARAAMIWIVGEYAERID-----N 461 (591)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT-----T
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH----HHHHHHHHHHHHhccCHHHHHHHHHHHHccccccc-----C
Confidence 55555555555555555555555444443332211 122232333333 2344455544444444321111 1
Q ss_pred HHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhchH--HHHHhHhhhh
Q psy10461 1262 ALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV--RILQYVLQGL 1309 (1359)
Q Consensus 1262 aliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~~--~ll~~vLpgL 1309 (1359)
...++..+...+.+.++.|+..++.++-.+....... ..+++++...
T Consensus 462 -~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~ 510 (591)
T 2vgl_B 462 -ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLA 510 (591)
T ss_dssp -HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 1233444555666678888888888887766544332 3555566544
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.47 E-value=2.3e-12 Score=157.98 Aligned_cols=370 Identities=15% Similarity=0.134 Sum_probs=252.4
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc-c
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR-V 980 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~-i 980 (1359)
.+++.+...++|.++.||+.|+.++.++.. .+++.+.. ..+++.+..++.|....+ ..++.+|+.++..-+.. .
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~~~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQMVED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCCHHH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhhccc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 445668889999999999999999999998 55663332 146677778887766555 55666677766554432 2
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhC
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG 1060 (1359)
....+..+..|+..+.+.++.++....++++.+++. .+.....+++.+...|.+.++.|+..++.++..+...++
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-----~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-----DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-----SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 344566677777777888999988888877776532 123345677777778888888888888777777654321
Q ss_pred CCCCCCchh----chHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhh----------------HH-----------
Q psy10461 1061 MTKMTPPIK----DLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSA----------------RE----------- 1109 (1359)
Q Consensus 1061 ~~~lsp~l~----~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~----------------kE----------- 1109 (1359)
.. ...++ .+.+.++.++ +....||..++..|+.++...++.+.. .+
T Consensus 272 ~~--~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~ 348 (591)
T 2vgl_B 272 KD--SDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQ 348 (591)
T ss_dssp BT--TBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCS
T ss_pred CC--HHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCCh
Confidence 00 01122 3334444444 578899999999999998753332211 00
Q ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc--ccc
Q psy10461 1110 --WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FTV 1183 (1359)
Q Consensus 1110 --~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP--~~V 1183 (1359)
+..+..+|+..+++....+|+.++.+++.++..+++ +.+++.|++.++....+++..+..++..+...+.. ..+
T Consensus 349 ~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~ 428 (591)
T 2vgl_B 349 ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESI 428 (591)
T ss_dssp STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHH
Confidence 123444555667777889999999999999998764 57888899999877777887777888887766532 368
Q ss_pred HHHHHHhcC-CCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhH
Q psy10461 1184 LPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA 1262 (1359)
Q Consensus 1184 LPaLLnlLk-DpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Eda 1262 (1359)
++.|...+. +.++.++..++|.|+..++.+.. ...++..+.+-+.+++..||..+++++..+....+.. .+..
T Consensus 429 v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~ 502 (591)
T 2vgl_B 429 IATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQEL 502 (591)
T ss_dssp HHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHH
Confidence 999999997 46788999999887766544422 1234443433455778899998888888887554432 2244
Q ss_pred HhhhHHhhhccccc-CChHHHHHHHHHHHHHH
Q psy10461 1263 LTHLLNYVWPNIFE-TSPHLVQAFMDAVEGLR 1293 (1359)
Q Consensus 1263 liHlLnlvlPnI~E-tsp~Vi~~ileaLeaLr 1293 (1359)
+.++|.... .+ .+++|+.++.+.+.-+.
T Consensus 503 i~~ll~~~~---~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 503 VQQVLSLAT---QDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HHHHHHHHH---TTCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhh---hcCCChHHHHHHHHHHHHHC
Confidence 445444332 34 67799999998886653
No 24
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.46 E-value=5.7e-12 Score=138.54 Aligned_cols=251 Identities=16% Similarity=0.090 Sum_probs=186.7
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
.++.|+..|+|+++.+|..|+..|..+. .. ..++.++.++++..... ..++.+++.+ +. ...
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~--------~~~~~L~~~l~d~~~~vR~~A~~aL~~l----~~-~~~ 86 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG----GQ--------DAVRLAIEFCSDKNYIRRDIGAFILGQI----KI-CKK 86 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC----CH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHS----CC-CTT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC----Cc--------hHHHHHHHHHcCCCHHHHHHHHHHHHHh----cc-ccc
Confidence 4788889999999999999999998754 32 46677777787765544 4455455443 21 122
Q ss_pred chHhHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 983 YLPQICGTIL-WRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 983 yl~qILpiIl-~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
.+..+++.+. .+++|+++.||..|++.++.++..... .....++.|...|.+.+++|+..++.+|+.+..
T Consensus 87 ~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 87 CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 3566777776 467899999999999999999854321 122467778888999999999988787775432
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk 1141 (1359)
...+|.+..+++|.++.||..++..++.+..... .+...++.+|+|....||..|+.+|+.++
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~- 220 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK- 220 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC-
Confidence 2578999999999999999999999998842111 13345578889999999999999998875
Q ss_pred HhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCC-CCchhHHHHHHHH
Q psy10461 1142 AIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV-PELNVQNGVLKAL 1206 (1359)
Q Consensus 1142 ~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkD-pE~nVR~~VlkaL 1206 (1359)
....++.|+..++..+ +|..++.+++.++. ..++|.|...+++ +..+++..++..|
T Consensus 221 ---~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 221 ---DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 5678888888887543 89888888888754 4799999999975 4566666666554
No 25
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=99.45 E-value=3.3e-14 Score=111.75 Aligned_cols=39 Identities=82% Similarity=1.423 Sum_probs=37.7
Q ss_pred CCCHHHHHHhhHHHhhhccCCCCChHHhhhcCCCCCeec
Q psy10461 330 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 368 (1359)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 368 (1359)
+|||+++|+++|++|+++|||||||||||+|||+|||||
T Consensus 1 ~mtpe~~~~~~~~~ei~~RNrpltDEeLD~mLP~GYkIl 39 (39)
T 3lqv_P 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCCCHHHHHHTCCSSEEEC
T ss_pred CCCHHHHHHHHhhccchhhcCCCCHHHHHHhCCCCcccC
Confidence 489999999999999999999999999999999999996
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=1e-11 Score=134.67 Aligned_cols=193 Identities=13% Similarity=0.163 Sum_probs=157.9
Q ss_pred HHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHH
Q psy10461 950 GILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLN-NKSAKVRQQAADLISRIAVVMKTCQEEKLMG 1027 (1359)
Q Consensus 950 ~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~-Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~ 1027 (1359)
.|...+++..-.+ ..++..|..+++..+......+.++++.|..++. |.+..||..|+.+++.|+..++... ...+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHH
Confidence 3444555544444 6778889999998666555667899999999994 9999999999999999999887532 46788
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-CCchh
Q psy10461 1028 HLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG-PEYVS 1106 (1359)
Q Consensus 1028 ~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g-~e~v~ 1106 (1359)
.+++.|++.++|..+.|+..+..++..++...+ +..++|.+...+++++|.||..++..|+.+.... .+.+.
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 899999999999999999999999999987543 5689999999999999999999999999987653 33222
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHH
Q psy10461 1107 AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA 1150 (1359)
Q Consensus 1107 ~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp 1150 (1359)
...+..++..++..|.|.+..||.+|..+++.|+..+|.+.+.+
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~ 214 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTP 214 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 33356677788899999999999999999999999999754444
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=4.6e-12 Score=137.36 Aligned_cols=181 Identities=10% Similarity=0.167 Sum_probs=154.8
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhCch--
Q psy10461 1070 DLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIGPH-- 1146 (1359)
Q Consensus 1070 ~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelL-kD~~~sVR~AAv~tLg~IAk~~Gpe-- 1146 (1359)
.+-+.+...+.+++|++|.+++..|..++..+....... +.+++..+...| +|.+..||.+|+.+|+.|++.+|+.
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444567778889999999999999999988654433222 445676777888 5999999999999999999998872
Q ss_pred ----hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh--hchhh
Q psy10461 1147 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDY 1220 (1359)
Q Consensus 1147 ----dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~--~~kdY 1220 (1359)
.+++.|+..++..+..+|.++..++..+++.++...++|.|+..+++..+.||..++..|+.++...++ ....|
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 577888888888877899999999999999888778999999999999999999999999998877764 35678
Q ss_pred HHhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1221 IYAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1221 L~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
+..++|.|..++.|++..||..|..++..|+
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887
No 28
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.40 E-value=2.3e-11 Score=133.65 Aligned_cols=251 Identities=13% Similarity=0.108 Sum_probs=183.6
Q ss_pred HHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhH
Q psy10461 947 LIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKL 1025 (1359)
Q Consensus 947 Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~l 1025 (1359)
.++.++..|.+..... ..++.+++.+. -...++.+..+++|+++.||..|+.+++.++..- ..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~------~~ 87 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK------KC 87 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT------TT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc------cc
Confidence 3566777777655444 44555555442 1567888999999999999999999998886321 12
Q ss_pred HHHHHHHHHH-HhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCc
Q psy10461 1026 MGHLGVVLYE-YLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEY 1104 (1359)
Q Consensus 1026 L~~Ll~iLle-~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~ 1104 (1359)
+..+++.|.. .+.|.+++|+..++.+|+.+..... ......+|.+...++|.++.||.+++..++.++...
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~--- 159 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA--- 159 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C---
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH---
Confidence 2335555553 4678889999999999999875421 113467888888999999999999999999876521
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccH
Q psy10461 1105 VSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL 1184 (1359)
Q Consensus 1105 v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VL 1184 (1359)
.+..|+.+|+|....||..|+.+|+.++. ....+++.|+..++..+..+|..++.+++.++ ...++
T Consensus 160 --------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~~~~~ 225 (280)
T 1oyz_A 160 --------TIPLLINLLKDPNGDVRNWAAFAININKY--DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----DKRVL 225 (280)
T ss_dssp --------CHHHHHHHHTCSSHHHHHHHHHHHHHHTC--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----CGGGH
T ss_pred --------HHHHHHHHHcCCCHHHHHHHHHHHHhhcc--CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----CHhhH
Confidence 22345678899999999999999998742 24578888999898888889999999998876 45799
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc-ChHHHHHHHHHH
Q psy10461 1185 PALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR-DLVHRQTACATI 1247 (1359)
Q Consensus 1185 PaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~-D~~VRqtA~saI 1247 (1359)
|.|+..++|++ ||..++.+|+.+ |. ..++|.|..++.+. +..++..+..++
T Consensus 226 ~~L~~~l~d~~--vr~~a~~aL~~i----~~------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 226 SVLCDELKKNT--VYDDIIEAAGEL----GD------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHTSSS--CCHHHHHHHHHH----CC------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHhcCcc--HHHHHHHHHHhc----Cc------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 99999999965 899998887665 43 36778888888654 555555444444
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.40 E-value=3.3e-10 Score=134.21 Aligned_cols=377 Identities=9% Similarity=0.075 Sum_probs=234.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHH--HHHHHHHHHhhccCc-hhH-HHHHHHHHHHHhhcccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLE--EQLIDGILYAFQEQT-TED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~--~~Lld~LLplLqd~~-~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
.++.|+..|+++++.+|..|+..|..++..-... ..+. ...+..++..+.+.. .+. ..++.++..++..-...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~---~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR---HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH---HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH---HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 4888999999999999999999999998632110 0000 134555556665432 222 45555566554321111
Q ss_pred cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHHHHHHhcccChHHHHHHHHHHHHHHH-
Q psy10461 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKL-MGHLGVVLYEYLGEEYPEVLGSILGALKAIVN- 1057 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~l-L~~Ll~iLle~L~De~pEVl~siL~AL~aIa~- 1057 (1359)
..-.-...++.+..+++++++.||..|+.+|.+++..-..... .+ -...++.|.+.|.+.++++...++.+|..++.
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH-HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH-HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 1111235788999999999999999999999999875332111 11 13467777777777666665554444443321
Q ss_pred -------------------HhCCCC----------------CCCch------hchHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1058 -------------------VIGMTK----------------MTPPI------KDLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1058 -------------------vlG~~~----------------lsp~l------~~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
.+.... ..+.. ...+|.+..++++.+..+++.++..+..
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 000000 00000 1356777778888889999999999999
Q ss_pred HHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--------hhHHHHHHHhhhcc--cchhHHH
Q psy10461 1097 IADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--------HDVLATLLNNLKVQ--ERQNRVC 1166 (1359)
Q Consensus 1097 IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--------edVlp~LL~~Lk~q--e~~VRv~ 1166 (1359)
++........ ...++..|+.+|.+....+|..|+.+|+.|+.. ++ ...++.|+..++.. +..+|..
T Consensus 254 l~~~~~~~~~---~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 254 LSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHTTCTTCSC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCChhhHH---HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 9874332211 123455667888888899999999999999763 22 13566777777642 2468888
Q ss_pred HHHHHHHHhhhcC----------ccccHHHHHHhcCCCC-chhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHh
Q psy10461 1167 TTVAIAIVAETCS----------PFTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM 1233 (1359)
Q Consensus 1167 ta~AIg~LAea~g----------P~~VLPaLLnlLkDpE-~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~ 1233 (1359)
++.+++.++.... ....+|.|++.|+++. ..||..++++|+.++. +......+ ..++|.|.+++.
T Consensus 330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHH
Confidence 8899998864321 1268999999999987 4899999999988874 32222222 467888888888
Q ss_pred ccChHHHHHHHHHHHH----------------------HHhhhcCCCchhHHh--hhHHhhhcccccCChHHHHHHHHHH
Q psy10461 1234 DRDLVHRQTACATIKH----------------------MALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAV 1289 (1359)
Q Consensus 1234 D~D~~VRqtA~saIk~----------------------LAl~~~glG~Edali--HlLnlvlPnI~Etsp~Vi~~ileaL 1289 (1359)
+.+..+|..|+.++.. ++... .....+. ..++.+...+.+.+++++..+..++
T Consensus 408 ~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~---~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l 484 (529)
T 1jdh_A 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV---HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484 (529)
T ss_dssp HHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc---hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHH
Confidence 8887777655544433 21100 0000111 2345566667778888888777777
Q ss_pred HHHH
Q psy10461 1290 EGLR 1293 (1359)
Q Consensus 1290 eaLr 1293 (1359)
..+.
T Consensus 485 ~~l~ 488 (529)
T 1jdh_A 485 CELA 488 (529)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6543
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.39 E-value=2.9e-11 Score=153.27 Aligned_cols=385 Identities=9% Similarity=0.037 Sum_probs=249.3
Q ss_pred HhHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
..++..|+..|+++ ++.+|..|+.+|..++.. .+....-...-.+..|+.++++..... ..++.+|..++......
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 46788888888754 999999999999997653 111111111134566677777654444 56677777777664432
Q ss_pred cccch-HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH--------hhhhhH----------------------------
Q psy10461 980 VKPYL-PQICGTILWRLNNKSAKVRQQAADLISRIAVV--------MKTCQE---------------------------- 1022 (1359)
Q Consensus 980 ikPyl-~qILpiIl~LL~Des~~VR~aAAe~Is~LA~v--------l~~~~e---------------------------- 1022 (1359)
.+... ..+++.+..++++.+..||..|+.++..++.. +.....
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 22222 46889999999999999999999888877631 000000
Q ss_pred -----HhH-HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1023 -----EKL-MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1023 -----~~l-L~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
..+ -...++.|...|.+..++++..++++|..++...... ......+|.|+.++++.++.||..++.+|+.
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 000 0123455666666666777777778888777543211 1245789999999999999999999999999
Q ss_pred HHhhCCCchhhHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhCc----------hhHHHHHHHhhhcccc-hh
Q psy10461 1097 IADRGPEYVSAREWMRICFELLELLKAH--KKAIRRATVNTFGYIAKAIGP----------HDVLATLLNNLKVQER-QN 1163 (1359)
Q Consensus 1097 IA~~g~e~v~~kE~mrIc~eLLelLkD~--~~sVR~AAv~tLg~IAk~~Gp----------edVlp~LL~~Lk~qe~-~V 1163 (1359)
|+....+.....--...+..|+.+|.+. ...||..|+.+|+.|+...+. ...++.|+..|+..+. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 9763321111000011444566777764 248999999999998753221 2346778888886665 78
Q ss_pred HHHHHHHHHHHhhhc------CccccHHHHHHhcCCCCch----------------------hHHHHHHHHHHHHHHhhh
Q psy10461 1164 RVCTTVAIAIVAETC------SPFTVLPALMNEYRVPELN----------------------VQNGVLKALSFLFEYIGE 1215 (1359)
Q Consensus 1164 Rv~ta~AIg~LAea~------gP~~VLPaLLnlLkDpE~n----------------------VR~~VlkaLs~Iae~IG~ 1215 (1359)
|..++.+++.|+..- ....++|.|+.+|++...+ |+..++.+|..++.. .
T Consensus 506 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--I 583 (780)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--H
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--h
Confidence 988899999887311 1126899999999865433 455666666555421 1
Q ss_pred hchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhh--hHHhhhcccccCChHHHHHHHHHHHH
Q psy10461 1216 MGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEG 1291 (1359)
Q Consensus 1216 ~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliH--lLnlvlPnI~Etsp~Vi~~ileaLea 1291 (1359)
.....+ ..++|.|..++.+.+..++..|+.++..|+..-. ....+.. .++.++..+.+.+++|+..+..+|..
T Consensus 584 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~---~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~ 660 (780)
T 2z6g_A 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE---AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 660 (780)
T ss_dssp HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHH---HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH---HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 111112 3567888889999999999989989888762211 1112222 24445555567889999999999988
Q ss_pred HHHhh
Q psy10461 1292 LRVAL 1296 (1359)
Q Consensus 1292 Lr~aL 1296 (1359)
+...-
T Consensus 661 l~~~~ 665 (780)
T 2z6g_A 661 MSEDK 665 (780)
T ss_dssp HHTTS
T ss_pred HHcCC
Confidence 77643
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.38 E-value=1.7e-10 Score=146.23 Aligned_cols=381 Identities=9% Similarity=0.072 Sum_probs=238.9
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCc-hhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT-TED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~-~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
...++.|+..|+++++.+|..|+.+|..++.......... ..+.++..|+..|.+.. .+. ..++.+|..++..-...
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~-~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH-hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 3468888888889999999999999999986432110000 00135556666666442 233 45555666654432111
Q ss_pred cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcccChHHHHHHHHHHHHHHH-
Q psy10461 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM-GHLGVVLYEYLGEEYPEVLGSILGALKAIVN- 1057 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL-~~Ll~iLle~L~De~pEVl~siL~AL~aIa~- 1057 (1359)
..-.-..+++.|..++++.++.||..|+.+|.+|+..-..+.. .+. ...++.|.+.|.+...++...++.+|..++.
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~-~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH-HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 1111235789999999999999999999999999875332111 111 3466777777766665555544444443321
Q ss_pred -------------------HhCCCC----------------CCCch------hchHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1058 -------------------VIGMTK----------------MTPPI------KDLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1058 -------------------vlG~~~----------------lsp~l------~~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
.+.... ..+.. ...+|.+..++++.+..+++.++.++..
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~ 386 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 110000 00000 1235667777888888899999999999
Q ss_pred HHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--------hhHHHHHHHhhhcc-cc-hhHHH
Q psy10461 1097 IADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--------HDVLATLLNNLKVQ-ER-QNRVC 1166 (1359)
Q Consensus 1097 IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--------edVlp~LL~~Lk~q-e~-~VRv~ 1166 (1359)
++......... ..++..|+.+|++....||+.|+.+|+.|+.. ++ ...++.|+..|... +. .+|..
T Consensus 387 L~~~~~~~~~~---~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~ 462 (780)
T 2z6g_A 387 LSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462 (780)
T ss_dssp HHTTCTTCSCC---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhccchhhhhh---hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHH
Confidence 88754332111 22455667888888899999999999999763 11 23567778777653 33 68999
Q ss_pred HHHHHHHHhhhcC----------ccccHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHh
Q psy10461 1167 TTVAIAIVAETCS----------PFTVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM 1233 (1359)
Q Consensus 1167 ta~AIg~LAea~g----------P~~VLPaLLnlLkDpE~-nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~ 1233 (1359)
++.+++.|+.... ....+|.|+++|+++.. .||..+|++|+.++. +......+ ..++|.|.+++.
T Consensus 463 Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 463 AICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998875322 13679999999998875 899999999988874 22112222 357787777776
Q ss_pred ccChH----------------------HHHHHHHHHHHHHhhhcCCCchhHH--hhhHHhhhcccccCChHHHHHHHHHH
Q psy10461 1234 DRDLV----------------------HRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAV 1289 (1359)
Q Consensus 1234 D~D~~----------------------VRqtA~saIk~LAl~~~glG~Edal--iHlLnlvlPnI~Etsp~Vi~~ileaL 1289 (1359)
+.+.. ++..++.+|..|+.... ....+ ...++.+...+.+.++.++..+..+|
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~---~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 617 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH---NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 617 (780)
T ss_dssp HHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH---HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh---hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 65433 34455566666542110 00111 12355666667778888998877777
Q ss_pred HHHH
Q psy10461 1290 EGLR 1293 (1359)
Q Consensus 1290 eaLr 1293 (1359)
..+.
T Consensus 618 ~~L~ 621 (780)
T 2z6g_A 618 CELA 621 (780)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.36 E-value=1.1e-10 Score=138.20 Aligned_cols=383 Identities=9% Similarity=0.033 Sum_probs=238.7
Q ss_pred HhHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKD-ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKD-es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
...+..|+..|++ +++.+|..|+..|..++.. ++....-.....+..|+.++++...+. ..++.++..++......
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch
Confidence 3567888888875 4899999999999987653 111111111124556666676654433 56677777777654332
Q ss_pred cccc-hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh-------hhhH-H---------------------------
Q psy10461 980 VKPY-LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK-------TCQE-E--------------------------- 1023 (1359)
Q Consensus 980 ikPy-l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~-------~~~e-~--------------------------- 1023 (1359)
.... -...++.+..++++.+..+|..++.++.+++..-. .+.. +
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 1111 25688999999999999999999989888763100 0000 0
Q ss_pred ------hHH-HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1024 ------KLM-GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1024 ------~lL-~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
.++ ...++.|...+.+..++++..++++|..++...... ......+|.++.++++.++.||..++.+++.
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 000 123455556666667778888888888877653211 1245789999999999999999999999999
Q ss_pred HHhhCCCchhhHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhCc----------hhHHHHHHHhhhcccc-hh
Q psy10461 1097 IADRGPEYVSAREWMRICFELLELLKAH--KKAIRRATVNTFGYIAKAIGP----------HDVLATLLNNLKVQER-QN 1163 (1359)
Q Consensus 1097 IA~~g~e~v~~kE~mrIc~eLLelLkD~--~~sVR~AAv~tLg~IAk~~Gp----------edVlp~LL~~Lk~qe~-~V 1163 (1359)
++....+.....--...+..++.+|.+. ...||..|+.+|+.|+..-+. ...++.|+..++..+. .+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9764321111100011344566778763 368999999999998653221 1346677888886653 68
Q ss_pred HHHHHHHHHHHhhhc------CccccHHHHHHhcCCCCchhHHHHHHHHHH---------------HHHHhhhhc-----
Q psy10461 1164 RVCTTVAIAIVAETC------SPFTVLPALMNEYRVPELNVQNGVLKALSF---------------LFEYIGEMG----- 1217 (1359)
Q Consensus 1164 Rv~ta~AIg~LAea~------gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~---------------Iae~IG~~~----- 1217 (1359)
|..++.+++.++..- ....++|.|++.|++.+..||..++++++. .+..+...+
T Consensus 373 ~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~ 452 (529)
T 1jdh_A 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN 452 (529)
T ss_dssp HHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchH
Confidence 888888888887421 112789999999998888888876665543 111111110
Q ss_pred hh-hH-HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHh--hhHHhhhcccccCChHHHHHHHHHHHHH
Q psy10461 1218 KD-YI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1218 kd-YL-~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Edali--HlLnlvlPnI~Etsp~Vi~~ileaLeaL 1292 (1359)
.. +. ..++|.|..++.|.+..+|..++.++..++..-. ++ ..+. ..++.+...+...+++|+..+..+++.+
T Consensus 453 ~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~--~~-~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--AA-EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH--HH-HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHH--HH-HHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 11 11 3466888889999999999988888888752100 01 1111 2234455555568889998887777654
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.35 E-value=3.4e-11 Score=145.49 Aligned_cols=345 Identities=13% Similarity=0.103 Sum_probs=231.0
Q ss_pred HhHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLK-DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LK-Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
..+|+.|+..|+ ++++.++..|+.+|..++.. .++....-+..-.+..|+.++.+...+. +.++.+|+.++.....
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~-~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~- 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA- 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-
Confidence 346899999996 56799999999999999862 1111000011123455666666665555 6777788888753221
Q ss_pred cccc--hHhHHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy10461 980 VKPY--LPQICGTILWRLNNKS-----AKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGAL 1052 (1359)
Q Consensus 980 ikPy--l~qILpiIl~LL~Des-----~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL 1052 (1359)
.+.. -...++.+..++.+.+ ..+.+.++.++++++..-........+..+++.|...|.+.++++...++++|
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1111 1235677777777543 45677788888888754332222344566888999999988999999888998
Q ss_pred HHHHHHhCCCCCCC-chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10461 1053 KAIVNVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRA 1131 (1359)
Q Consensus 1053 ~aIa~vlG~~~lsp-~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~A 1131 (1359)
..++..-... ... ....++|.++.++.+.++.|+..++.+|+.|+....+.....--...+..|+.+|.+.+..||+.
T Consensus 276 ~~l~~~~~~~-~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 276 SYLTDGPNER-IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHSSCHHH-HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHhhhhhhhh-HHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 8876421000 000 01257899999999999999999999999997532211100000012223567888889999999
Q ss_pred HHHHHHHHHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc--------ccHHHHHHhcCCCCc
Q psy10461 1132 TVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--------TVLPALMNEYRVPEL 1196 (1359)
Q Consensus 1132 Av~tLg~IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~--------~VLPaLLnlLkDpE~ 1196 (1359)
|+.+|+.|+..-.. ..+++.|+..++..+..+|..++.|++.++....++ .+++.|+++|+.++.
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 99999999863111 246777888888888889999999999887655442 689999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhc--hhhHHh-----HHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1197 NVQNGVLKALSFLFEYIGEMG--KDYIYA-----VTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1197 nVR~~VlkaLs~Iae~IG~~~--kdYL~~-----VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
+++..++.+|..|+....... ..|-.. .+..|+.+..+.+..++..|..+|..
T Consensus 435 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999988876543211 111111 24456667777888888877766644
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.35 E-value=6.1e-10 Score=137.41 Aligned_cols=379 Identities=9% Similarity=0.070 Sum_probs=238.7
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhH-HHHHHHHHHHhhccCch-hH-HHHHHHHHHHHhhccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRL-EEQLIDGILYAFQEQTT-ED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L-~~~Lld~LLplLqd~~~-eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
.++.|+..|+++++.+|..|+..|..++...... ..-. ....+..|+..|.+... +. ..++.+|..++..-....
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~--~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH--HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH--HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 4788889999999999999999999998743211 0000 01355666666765422 33 445555555443322111
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcccChHHHHHHHHHHHHHHH--
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM-GHLGVVLYEYLGEEYPEVLGSILGALKAIVN-- 1057 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL-~~Ll~iLle~L~De~pEVl~siL~AL~aIa~-- 1057 (1359)
.-+-..+++.|..++++.++.||..|+.+|.+|+..-..+.. .+. ...++.|.+.|.+.++++...++.+|..++.
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~-~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH-HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 112235889999999999999999999999999875432211 111 3467777777776666555544444444431
Q ss_pred ------------------HhCCCC----------------CCCch------hchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy10461 1058 ------------------VIGMTK----------------MTPPI------KDLLPRLTPILKNRHEKVQENCIDLVGRI 1097 (1359)
Q Consensus 1058 ------------------vlG~~~----------------lsp~l------~~lLP~L~~LLkDr~~rVR~AAielIg~I 1097 (1359)
.+.... ..+.. ...+|.++.++++.+..+++.++.+|..+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 110000 00000 12467777778888899999999999999
Q ss_pred HhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--------hhHHHHHHHhhhccc--chhHHHH
Q psy10461 1098 ADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--------HDVLATLLNNLKVQE--RQNRVCT 1167 (1359)
Q Consensus 1098 A~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--------edVlp~LL~~Lk~qe--~~VRv~t 1167 (1359)
+........ ...++..|+.+|.+....||..|+.+|+.|+.. ++ ...++.|+..+...+ ..+|..+
T Consensus 252 ~~~~~~~~~---~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 252 SDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp GGGCTTCCS---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcchhhhh---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 875432211 123555667888888889999999999999763 21 135667777776532 4688888
Q ss_pred HHHHHHHhhhcCc----------cccHHHHHHhcCCCC-chhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhcc
Q psy10461 1168 TVAIAIVAETCSP----------FTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDR 1235 (1359)
Q Consensus 1168 a~AIg~LAea~gP----------~~VLPaLLnlLkDpE-~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~ 1235 (1359)
+.+++.|+...+. ...+|.|+++|+++. ..||..++++|+.++..-.. ....+ ..++|.|.+++.+.
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhcc
Confidence 9999988643221 268999999999876 68999999999887642111 11122 45778787777765
Q ss_pred ChH----------------------HHHHHHHHHHHHHhhhcCCCchhHHh--hhHHhhhcccccCChHHHHHHHHHHHH
Q psy10461 1236 DLV----------------------HRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEG 1291 (1359)
Q Consensus 1236 D~~----------------------VRqtA~saIk~LAl~~~glG~Edali--HlLnlvlPnI~Etsp~Vi~~ileaLea 1291 (1359)
+.. ++..++.++..|+... .....+. ..++.+...+.+.+++++..+..++..
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~---~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 483 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV---HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH---HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 443 3444555555554211 0111111 235556666667788888777777655
Q ss_pred HH
Q psy10461 1292 LR 1293 (1359)
Q Consensus 1292 Lr 1293 (1359)
+.
T Consensus 484 l~ 485 (644)
T 2z6h_A 484 LA 485 (644)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.34 E-value=2.3e-11 Score=146.59 Aligned_cols=345 Identities=13% Similarity=0.101 Sum_probs=229.9
Q ss_pred hHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc
Q psy10461 903 EIINRVVDDLK-DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 903 eiI~~Ll~~LK-Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
.+|+.|+..|+ ++++.++..|+.+|..|+.. .++....-+..-.+..|+.+|++...+. +.++.+|+.++..... .
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-F 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-H
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-H
Confidence 46899999998 45689999999999999852 1111110011123456667777665555 6777788888754322 1
Q ss_pred ccc--hHhHHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy10461 981 KPY--LPQICGTILWRLNNKS-----AKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALK 1053 (1359)
Q Consensus 981 kPy--l~qILpiIl~LL~Des-----~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~ 1053 (1359)
+.. -...++.+..++...+ ..+.+.++.++++++..-........+..+++.|...|.+.+++++..++++|.
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 111 1234667777776543 456777888888887533222223345668889999999889999998889988
Q ss_pred HHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy10461 1054 AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATV 1133 (1359)
Q Consensus 1054 aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv 1133 (1359)
.++..-....-.-....++|.++.++.+.+..|+..++.+|+.|+..........--...+..|+.+|++.+..||+.|+
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 87532100000000124789999999999999999999999999753221110000000112234667888899999999
Q ss_pred HHHHHHHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc--------cccHHHHHHhcCCCCchh
Q psy10461 1134 NTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRVPELNV 1198 (1359)
Q Consensus 1134 ~tLg~IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP--------~~VLPaLLnlLkDpE~nV 1198 (1359)
.+|+.|+..-.. ..+++.|+..++..+..+|..++.+++.++....+ ..+++.|+++|+++++++
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 999999753111 24677788888888888999999999988765543 278999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhc--hhh---HH--hHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1199 QNGVLKALSFLFEYIGEMG--KDY---IY--AVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1199 R~~VlkaLs~Iae~IG~~~--kdY---L~--~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
+..++.+|..|++...... ..| +. -.+..|+.+...++..+++.|..+|..
T Consensus 418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999988887643211 112 21 235567777777888888877766644
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.34 E-value=5e-11 Score=131.65 Aligned_cols=204 Identities=16% Similarity=0.189 Sum_probs=162.3
Q ss_pred HHHHhhccCchhH-HHHHHHHHH-HHhhccccc--ccchHhHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHhh-hhhHH
Q psy10461 950 GILYAFQEQTTED-VVMLNGFGT-IVNQLGKRV--KPYLPQICGTILWRL-NNKSAKVRQQAADLISRIAVVMK-TCQEE 1023 (1359)
Q Consensus 950 ~LLplLqd~~~eD-~v~lkaLg~-Lae~Lg~~i--kPyl~qILpiIl~LL-~Des~~VR~aAAe~Is~LA~vl~-~~~e~ 1023 (1359)
.|...+++..-.+ ..++..++. +++...+.. ......++..|...+ +|.+..||..|+.+++.||..+. .....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 3445555554444 677888888 887766655 445568899999999 89999999999999999998886 43222
Q ss_pred hHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC
Q psy10461 1024 KLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPE 1103 (1359)
Q Consensus 1024 ~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e 1103 (1359)
.+...+++.+++.++|..+.|+..+..++.+++..++.....+++..+++.|+..+++++|.||++++.+|..++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 67788999999999999999999999999999998754322233778999999999999999999999999999986653
Q ss_pred ---chhhHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Q psy10461 1104 ---YVSAREW-MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLN 1154 (1359)
Q Consensus 1104 ---~v~~kE~-mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~ 1154 (1359)
.+.. .+ ..++..+...|.|.+..||.+|+++++.|++.+|.+.+.+.+-+
T Consensus 180 ~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 180 GYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp CSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred cchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 2222 13 34666777889999999999999999999999999888777643
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.33 E-value=1.3e-10 Score=143.72 Aligned_cols=381 Identities=13% Similarity=0.093 Sum_probs=250.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPY 983 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPy 983 (1359)
+..|-..|++.+...|+.++.++-.+.. +|-. .. .+.-+++-++++...+. ..+.-.+..+++.-. ..
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~-~G~d-~~-----~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~----e~ 104 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHM-LGYP-AH-----FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQ----DV 104 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHH-TTCC-CG-----GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH----HH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHH-cCCC-Cc-----chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc----HH
Confidence 4556667777777888888887776644 6754 11 24455566666554444 333222222222111 12
Q ss_pred hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 984 l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
+--+++.|..-++|+++.||..|..++++|+. .+++..+++.+...|.+..+.|++.++-++..++.... +
T Consensus 105 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~- 175 (618)
T 1w63_A 105 HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-E- 175 (618)
T ss_dssp HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-G-
T ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-H-
Confidence 34567788888999999999999999999972 34566788899999999999999999999999987532 1
Q ss_pred CCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh---------------hHHHH
Q psy10461 1064 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA---------------HKKAI 1128 (1359)
Q Consensus 1064 lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD---------------~~~sV 1128 (1359)
.+..+++.+..++.|+++.|+.+++.++..|+....+. ...+..+...++.+|++ .....
T Consensus 176 ---~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 176 ---LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp ---GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred ---HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 24578888888999999999999999999987532211 11122334444555554 24566
Q ss_pred HHHHHHHHHHHHHHhCch------hHHHHHHHhh---hcccchhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcCCCCc
Q psy10461 1129 RRATVNTFGYIAKAIGPH------DVLATLLNNL---KVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPEL 1196 (1359)
Q Consensus 1129 R~AAv~tLg~IAk~~Gpe------dVlp~LL~~L---k~qe~~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLkDpE~ 1196 (1359)
+..+++.|+.++.. .++ +++..++... +..+..+.+.++.++..+.. .+. ..+..|...+.++++
T Consensus 251 q~~il~~L~~l~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~ 327 (618)
T 1w63_A 251 QVRILRLLRILGRN-DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDK 327 (618)
T ss_dssp HHHHHHHHHHHTTT-CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSST
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCC
Confidence 67778888877653 221 2333443322 12223466666666665432 121 356778888899999
Q ss_pred hhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccccc
Q psy10461 1197 NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE 1276 (1359)
Q Consensus 1197 nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~E 1276 (1359)
|||..++.+|..++..-+..+.+|...|++ ++.|.|..+|..|..++..|+ ..-..+. ++..++..+.+
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~----~l~d~d~~Ir~~alelL~~l~---~~~nv~~----iv~eL~~~l~~ 396 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVD----CLKDLDVSIKRRAMELSFALV---NGNNIRG----MMKELLYFLDS 396 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHH----GGGSSCHHHHHHHHHHHHHHC---CSSSTHH----HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHHHH----HccCCChhHHHHHHHHHHHHc---ccccHHH----HHHHHHHHHHh
Confidence 999999999999888766555555555555 667899999998888888775 2211233 34445555556
Q ss_pred CChHHHHHHHHHHHHHHHhhch--HHHHHhHhhhhccccccchhhHHHHH
Q psy10461 1277 TSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPARKVRDVYWKIY 1324 (1359)
Q Consensus 1277 tsp~Vi~~ileaLeaLr~aLG~--~~ll~~vLpgLfhpA~kvrd~~WRvy 1324 (1359)
.+.+++..++.+|..++....+ .-++..++..+-.....+.+..|...
T Consensus 397 ~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l 446 (618)
T 1w63_A 397 CEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNL 446 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 8889999999999999886543 33455555444433444556556554
No 38
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.32 E-value=5.7e-10 Score=137.69 Aligned_cols=385 Identities=10% Similarity=0.049 Sum_probs=248.0
Q ss_pred HhHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
..++..|+..|++. ++.+|..|+..|..++.. ++....-...-.+..|+.++++...+. ..++.++..++......
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh
Confidence 45688888888765 899999999999977653 111111001124556666777654443 56677777777654332
Q ss_pred cccc-hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh-------hH-----------------------------
Q psy10461 980 VKPY-LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTC-------QE----------------------------- 1022 (1359)
Q Consensus 980 ikPy-l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~-------~e----------------------------- 1022 (1359)
...+ -..+++.|..++++.++.++..++.++.+++..-..+ ..
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 2222 2578899999999999999999999998887411000 00
Q ss_pred -----HhHH-HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1023 -----EKLM-GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1023 -----~~lL-~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
..++ ...++.|...|.+.+++++..++++|..++..... .......+|.++.++++.++.||+.++.+|..
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0000 11345555566666777777888888887654321 12355789999999999999999999999999
Q ss_pred HHhhCCCchhhHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHhCc----------hhHHHHHHHhhhccc-chh
Q psy10461 1097 IADRGPEYVSAREWMRICFELLELLKAHK--KAIRRATVNTFGYIAKAIGP----------HDVLATLLNNLKVQE-RQN 1163 (1359)
Q Consensus 1097 IA~~g~e~v~~kE~mrIc~eLLelLkD~~--~sVR~AAv~tLg~IAk~~Gp----------edVlp~LL~~Lk~qe-~~V 1163 (1359)
|+....+.....--...+..|+.+|.+.. ..||..|+.+|+.|+...+. ...++.|+..|+..+ ..+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 97743211110000114555677787643 69999999999999753221 135677788887654 468
Q ss_pred HHHHHHHHHHHhhhc------CccccHHHHHHhcCCCCchhH----------------------HHHHHHHHHHHHHhhh
Q psy10461 1164 RVCTTVAIAIVAETC------SPFTVLPALMNEYRVPELNVQ----------------------NGVLKALSFLFEYIGE 1215 (1359)
Q Consensus 1164 Rv~ta~AIg~LAea~------gP~~VLPaLLnlLkDpE~nVR----------------------~~VlkaLs~Iae~IG~ 1215 (1359)
|..++.+++.++..- ....++|.|++.|++...+|| ..++.+|..++..-
T Consensus 370 ~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-- 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-- 447 (644)
T ss_dssp HHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH--
Confidence 888888888887421 123789999999987655444 44555554443211
Q ss_pred hchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHh--hhHHhhhcccccCChHHHHHHHHHHHH
Q psy10461 1216 MGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEG 1291 (1359)
Q Consensus 1216 ~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Edali--HlLnlvlPnI~Etsp~Vi~~ileaLea 1291 (1359)
....++ ..++|.|.+++.+.+..++..|+.++..++..-. ....+. ..++.+...+...+++|+.++..+|..
T Consensus 448 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~---~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~ 524 (644)
T 2z6h_A 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE---AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 524 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHH---HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHH---HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHH
Confidence 112223 3578888889999999999888888888763200 111121 123445555566889999998888877
Q ss_pred HHHhh
Q psy10461 1292 LRVAL 1296 (1359)
Q Consensus 1292 Lr~aL 1296 (1359)
+...-
T Consensus 525 l~~~~ 529 (644)
T 2z6h_A 525 MSEDK 529 (644)
T ss_dssp HTTTS
T ss_pred HhccC
Confidence 76543
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.31 E-value=7.9e-10 Score=136.58 Aligned_cols=367 Identities=12% Similarity=0.047 Sum_probs=231.4
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccc---
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGK--- 978 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~--- 978 (1359)
.+++.+...|+|.++.||+.|+.++.++... .|+.+ +.+++.+..++.|....+ ..++.+|+.++..-++
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3477788889999999999999999999984 34411 123444444555543333 3344445554433221
Q ss_pred ccccchHhHHHHHHHhhc-----------CCCHHHHHHHHHHHHHHHHHh-----------hh-----------------
Q psy10461 979 RVKPYLPQICGTILWRLN-----------NKSAKVRQQAADLISRIAVVM-----------KT----------------- 1019 (1359)
Q Consensus 979 ~ikPyl~qILpiIl~LL~-----------Des~~VR~aAAe~Is~LA~vl-----------~~----------------- 1019 (1359)
.+...++.++..|..++. ..++-.+..+.++++.++..- ..
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 112233333333333221 135666666666555554310 00
Q ss_pred -hh--------HHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHH
Q psy10461 1020 -CQ--------EEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENC 1090 (1359)
Q Consensus 1020 -~~--------e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AA 1090 (1359)
|. ...+.......|...|.+.++++...++.++..++..-. ..+.++++.++..+.|....||..+
T Consensus 296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-----~~~~~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-----NAVQRHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-----HHHGGGHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-----HHHHHHHHHHHHHccCCChhHHHHH
Confidence 00 011112234455555666778888888888888876532 1255788888999999999999999
Q ss_pred HHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhhcccchhHHHHH
Q psy10461 1091 IDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTT 1168 (1359)
Q Consensus 1091 ielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk~qe~~VRv~ta 1168 (1359)
++++..++.... +..++.+++..+.+....+|+.++.+++.+|..+.+ +.+++.|++.++....+++..+.
T Consensus 371 lelL~~l~~~~n-------v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~ 443 (618)
T 1w63_A 371 MELSFALVNGNN-------IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAV 443 (618)
T ss_dssp HHHHHHHCCSSS-------THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHH
T ss_pred HHHHHHHccccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHH
Confidence 999999876332 234667778888888889999999999999998865 47888888888866655665555
Q ss_pred HHHHHHhhhcCcc---ccHHHHHHhcCC---CCchhHHHHHHHHHHHHHHhhhh-chh------hHHhHHHHHHHHHh--
Q psy10461 1169 VAIAIVAETCSPF---TVLPALMNEYRV---PELNVQNGVLKALSFLFEYIGEM-GKD------YIYAVTPLLEDALM-- 1233 (1359)
Q Consensus 1169 ~AIg~LAea~gP~---~VLPaLLnlLkD---pE~nVR~~VlkaLs~Iae~IG~~-~kd------YL~~VlPlLedaL~-- 1233 (1359)
.++-.+... .|. .++..|...+.+ .++.++ .++|.|+..++.+... ..+ .-..+.+.|..++.
T Consensus 444 ~~l~~ii~~-~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 521 (618)
T 1w63_A 444 PNLIQLITN-SVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN 521 (618)
T ss_dssp HHHHHHHHH-SCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST
T ss_pred HHHHHHHhc-ChhHHHHHHHHHHHHHhcccccHHHHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc
Confidence 555555433 232 467777777764 244444 6888888877766320 000 01235566666664
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHH
Q psy10461 1234 DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 1294 (1359)
Q Consensus 1234 D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~ 1294 (1359)
..+..+|..+.+++..+...... ..+.+.++|..+. .+.+++|+.++.+.+.-+..
T Consensus 522 ~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~---~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 522 MSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYG---SSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcC
Confidence 56789998888888787765543 3566667666653 35788999998888866543
No 40
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.25 E-value=2.8e-09 Score=135.24 Aligned_cols=403 Identities=15% Similarity=0.121 Sum_probs=262.8
Q ss_pred ChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcc-
Q psy10461 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLG- 977 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg- 977 (1359)
..+..++.|+..+.+++..++..|+..+...+.. ++ ....+...-+..|+.++++..... ..++-++..+....+
T Consensus 287 ~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~-~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 287 AREGILQMILAMATTDDELQQRVACECLIAASSK--KD-KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp HTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HH-HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred hccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cH-HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 3456688899999999999999999999986543 22 111111122244445555433222 222224444443222
Q ss_pred c-ccc----cchHhHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhhhhhHHhHH--HHHHHHHHHHhcccChHHHHHH
Q psy10461 978 K-RVK----PYLPQICGTILWRLNNK--SAKVRQQAADLISRIAVVMKTCQEEKLM--GHLGVVLYEYLGEEYPEVLGSI 1048 (1359)
Q Consensus 978 ~-~ik----Pyl~qILpiIl~LL~De--s~~VR~aAAe~Is~LA~vl~~~~e~~lL--~~Ll~iLle~L~De~pEVl~si 1048 (1359)
+ .++ .-+.+|++.+..++.++ +..+|+.|++.|+.++..-..+ ..+. ...++.|++.|+..++.+...+
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk--~~lv~d~g~Ip~LV~LL~s~d~~i~~~a 441 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK--EKLIEDKASIHALMDLARGGNQSCLYGV 441 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHH--HHHHHCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHH--HHHHHccchHHHHHHHhCCCChHHHHHH
Confidence 1 112 22578899999999887 8999999999999997543322 2222 3578888888887788888888
Q ss_pred HHHHHHHHHHhCCC-------CCCCc----------------hh---------chHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy10461 1049 LGALKAIVNVIGMT-------KMTPP----------------IK---------DLLPRLTPILKNRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1049 L~AL~aIa~vlG~~-------~lsp~----------------l~---------~lLP~L~~LLkDr~~rVR~AAielIg~ 1096 (1359)
+.+|..++..-..+ .+..+ .+ ..+|.++.+++..++.||+.++++|+.
T Consensus 442 l~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 442 VTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNA 521 (810)
T ss_dssp HHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888887632100 00000 01 368888889999999999999999999
Q ss_pred HHhhCCCchhhHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch---------hHHHHHHHhhhcccch-hH
Q psy10461 1097 IADRGPEYVSAREWMR--ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQERQ-NR 1164 (1359)
Q Consensus 1097 IA~~g~e~v~~kE~mr--Ic~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe---------dVlp~LL~~Lk~qe~~-VR 1164 (1359)
|+.. .+. ...+.+ ....|+.+|++....+|+.|+.+|..|+..-.++ .+++.|+..|..+... .+
T Consensus 522 LA~d-~~~--r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~ 598 (810)
T 3now_A 522 VCGL-KEL--RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALEN 598 (810)
T ss_dssp HHTS-HHH--HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHH
T ss_pred HcCC-HHH--HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHH
Confidence 9852 111 111111 3445678888877889999999999998654432 3467788887654332 34
Q ss_pred HHHHHHHHHHhhhcC-------ccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhcc
Q psy10461 1165 VCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDR 1235 (1359)
Q Consensus 1165 v~ta~AIg~LAea~g-------P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~ 1235 (1359)
..++.|+..|+..-. ....+|.|+++|.++...||..++.+|+.++..- .....++ ..++|+|..++...
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCC
Confidence 566788887775321 1267999999999999999999999998876421 1122233 25788998899888
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCchhHHh--hhHHhhhcccccCChHHHHHHHHHHHHHHHhhch----HHHHHhHhhhh
Q psy10461 1236 DLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP----VRILQYVLQGL 1309 (1359)
Q Consensus 1236 D~~VRqtA~saIk~LAl~~~glG~Edali--HlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~----~~ll~~vLpgL 1309 (1359)
+..+|..|+.+|..|+-+... .....+. ..++.+...+...+.+++.+...++..+... +. .++-.-+++.|
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L 755 (810)
T 3now_A 678 DEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELL 755 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHH
Confidence 999999999999999753111 0112222 2455566666668889998888888777552 22 22333345566
Q ss_pred cccc
Q psy10461 1310 FHPA 1313 (1359)
Q Consensus 1310 fhpA 1313 (1359)
..+.
T Consensus 756 ~~LL 759 (810)
T 3now_A 756 SGLG 759 (810)
T ss_dssp TTSC
T ss_pred HHHH
Confidence 6554
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.23 E-value=8.7e-10 Score=141.85 Aligned_cols=386 Identities=12% Similarity=0.078 Sum_probs=223.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHh-------hccCch--hH--HHHHHHHHHHHhhcccccc--
Q psy10461 915 ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYA-------FQEQTT--ED--VVMLNGFGTIVNQLGKRVK-- 981 (1359)
Q Consensus 915 es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLpl-------Lqd~~~--eD--~v~lkaLg~Lae~Lg~~ik-- 981 (1359)
.++.+|..|++++..++..-.+.+.. .+...++..++.+ .++... ++ +.+++.|..+++.....+.
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYP-KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCH-HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccH-HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999998731111111 1122233332221 122111 13 4556666666644333222
Q ss_pred ---------cchHhHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHh-hhh--------h--HHhHHHHHHHHHHHH
Q psy10461 982 ---------PYLPQICGTILWRLNN-----KSAKVRQQAADLISRIAVVM-KTC--------Q--EEKLMGHLGVVLYEY 1036 (1359)
Q Consensus 982 ---------Pyl~qILpiIl~LL~D-----es~~VR~aAAe~Is~LA~vl-~~~--------~--e~~lL~~Ll~iLle~ 1036 (1359)
+++..+++.++..+.+ .+..|+..+.+.|..++..+ ..+ . ....+..++..++..
T Consensus 335 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 414 (971)
T 2x1g_F 335 ITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK 414 (971)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788887776643 57789999999999998733 111 0 134666777777777
Q ss_pred hc--------ccCh-------HHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcC-----CCHHHHHHHHHHHHH
Q psy10461 1037 LG--------EEYP-------EVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKN-----RHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1037 L~--------De~p-------EVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkD-----r~~rVR~AAielIg~ 1096 (1359)
+. ++++ +.+..+...+..++..+| + ..+..+++.+...+.. .+|+.+++++.+++.
T Consensus 415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~---~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ 490 (971)
T 2x1g_F 415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-D---YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQS 490 (971)
T ss_dssp TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-T---HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-H---HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 62 1122 233445566777776655 2 1123344444444433 789999999999999
Q ss_pred HHhhCCCchhhHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHhhhcccchhHHHHHH
Q psy10461 1097 IADRGPEYVSAREWMRICFELLELLK--AHKKAIRRATVNTFGYIAKAIGPH-----DVLATLLNNLKVQERQNRVCTTV 1169 (1359)
Q Consensus 1097 IA~~g~e~v~~kE~mrIc~eLLelLk--D~~~sVR~AAv~tLg~IAk~~Gpe-----dVlp~LL~~Lk~qe~~VRv~ta~ 1169 (1359)
|++.+....... +.+++. +++-|. |.+..||..++.++|.+++.+..+ .+++.|+..+ . ..|+..++.
T Consensus 491 iae~~~~~~~~~-l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 491 VAEHFGGEEKRQ-IPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp TTTC------CH-HHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHhhcChhhhHH-HHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 998665433211 233333 333344 457899999999999999988742 4566666666 2 568888899
Q ss_pred HHHHHhhhcCc----c--ccHHHHHHhcCCC--CchhHHHHHHHHHHHHHHhh-hhchhhHHh----HHHHHHHHHhcc-
Q psy10461 1170 AIAIVAETCSP----F--TVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIG-EMGKDYIYA----VTPLLEDALMDR- 1235 (1359)
Q Consensus 1170 AIg~LAea~gP----~--~VLPaLLnlLkDp--E~nVR~~VlkaLs~Iae~IG-~~~kdYL~~----VlPlLedaL~D~- 1235 (1359)
||..+++.|+. + .++..|.+.+..+ +.+++..++.+++.++..++ .....|+.. ++..++.++...
T Consensus 566 al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 645 (971)
T 2x1g_F 566 GLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADS 645 (971)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998853 3 5666666777653 46899999999999988765 233444443 444444444332
Q ss_pred -ChHHHHHHHHHHHHHHhhhcCCCc-----------hhHHhhhHHhhhcccc------cCChHHHHHHHHHHHHHHHhhc
Q psy10461 1236 -DLVHRQTACATIKHMALGVYGFGC-----------EDALTHLLNYVWPNIF------ETSPHLVQAFMDAVEGLRVALG 1297 (1359)
Q Consensus 1236 -D~~VRqtA~saIk~LAl~~~glG~-----------EdaliHlLnlvlPnI~------Etsp~Vi~~ileaLeaLr~aLG 1297 (1359)
+..-+......+..|+-.+..++. .+.+.++++.+||.+. ..+..+..+++.++..+..++|
T Consensus 646 ~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 646 KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhh
Confidence 222333333444444322222211 1223344444554221 2466888899999999888888
Q ss_pred hHH--HHHhHhhhhc
Q psy10461 1298 PVR--ILQYVLQGLF 1310 (1359)
Q Consensus 1298 ~~~--ll~~vLpgLf 1310 (1359)
.++ +++.+++.++
T Consensus 726 ~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 726 SSFQPMLQDLCLFIV 740 (971)
T ss_dssp C--CTHHHHHHHHHH
T ss_pred hhccccHHHHHHHHH
Confidence 753 3444444443
No 42
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.23 E-value=1.1e-09 Score=141.40 Aligned_cols=338 Identities=11% Similarity=0.072 Sum_probs=207.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc---
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR--- 979 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~--- 979 (1359)
+-..|+..+.+++..+|..+..+|..|+..-.|+.|++ +++.++..+++..... ..++.++..+++.....
T Consensus 86 ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~-----ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~ 160 (960)
T 1wa5_C 86 IKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPT-----LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRS 160 (960)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTT-----HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhH-----HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44456666666779999999999999999877787875 7788888887653333 67778888888755321
Q ss_pred ----------cccchHhHHHHHHH---hhcCCCH---HHHHHHHHHHHHHHHHhhhh-------hHHhHHHHHHHHHHHH
Q psy10461 980 ----------VKPYLPQICGTILW---RLNNKSA---KVRQQAADLISRIAVVMKTC-------QEEKLMGHLGVVLYEY 1036 (1359)
Q Consensus 980 ----------ikPyl~qILpiIl~---LL~Des~---~VR~aAAe~Is~LA~vl~~~-------~e~~lL~~Ll~iLle~ 1036 (1359)
+..+++.++.++.. .+++.+. .+| .+.+++..+..++... ...+.+...++.+...
T Consensus 161 ~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 161 DELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 12233333333322 2555432 244 2333333333333210 0022344455555554
Q ss_pred hccc----------C-----hHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc-----CCCHHHHHHHHHHHHH
Q psy10461 1037 LGEE----------Y-----PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK-----NRHEKVQENCIDLVGR 1096 (1359)
Q Consensus 1037 L~De----------~-----pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk-----Dr~~rVR~AAielIg~ 1096 (1359)
|... . ..+...++.+|..+....+.. +.+++.+++..+..++. .....++..+++.+..
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~-f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDV-FGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 4221 0 123456777777777664321 22333334443333443 4567899999999998
Q ss_pred HHhhCC--Cchh-hHHHHHHH-HHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHhCchhHH
Q psy10461 1097 IADRGP--EYVS-AREWMRIC-FELLELLK-----------------------AHKKAIRRATVNTFGYIAKAIGPHDVL 1149 (1359)
Q Consensus 1097 IA~~g~--e~v~-~kE~mrIc-~eLLelLk-----------------------D~~~sVR~AAv~tLg~IAk~~GpedVl 1149 (1359)
+++... ..+. ...+.++| ..+++.+. +..+++|.+|.+.|..++..+| +.++
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~ 397 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVT 397 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHH
T ss_pred HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHH
Confidence 875211 1221 11133344 22333321 1234799999999999999988 5555
Q ss_pred HHHHH----hhh------cccchhHHHHHHHHHHHhhh---cC-c-c------ccHHH----HHHhcCCC---CchhHHH
Q psy10461 1150 ATLLN----NLK------VQERQNRVCTTVAIAIVAET---CS-P-F------TVLPA----LMNEYRVP---ELNVQNG 1201 (1359)
Q Consensus 1150 p~LL~----~Lk------~qe~~VRv~ta~AIg~LAea---~g-P-~------~VLPa----LLnlLkDp---E~nVR~~ 1201 (1359)
+.+++ .+. ..++..|.++..++|.+|+. |. + . .+.+. ++..|+|+ .+-||..
T Consensus 398 ~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~ 477 (960)
T 1wa5_C 398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD 477 (960)
T ss_dssp HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHH
Confidence 54433 344 45667899999999999875 21 1 1 44443 45556888 7889999
Q ss_pred HHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q psy10461 1202 VLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1202 VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl 1252 (1359)
+|++|+.+++.+. .+++..++|.+...+.|.+..||..||.++..+..
T Consensus 478 a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 478 AIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 9999998888763 56888999999989999999999999999999864
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=2.1e-10 Score=120.86 Aligned_cols=189 Identities=20% Similarity=0.161 Sum_probs=151.8
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKM 1064 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~l 1064 (1359)
...++.+..+++|+++.||..|+..++.++. ...++.|.+.|.+.++.++..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4567788889999999999999999998753 1245667888888899999888888877531
Q ss_pred CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q psy10461 1065 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 1144 (1359)
Q Consensus 1065 sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~G 1144 (1359)
...++.+..+++|.++.||.+++..++.+.... .+..|+.+|.|....||..|+.+|+.+ |
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-----------~~~~L~~~l~d~~~~vr~~a~~aL~~~----~ 140 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGEI----G 140 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-----------GHHHHHHHTTCSSHHHHHHHHHHHHHH----C
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHhCCCHHHHHHHHHHHHHc----C
Confidence 267899999999999999999999999885411 223456788999999999999999987 4
Q ss_pred chhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhh
Q psy10461 1145 PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1145 pedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG 1214 (1359)
....++.|+..++..+..||..++.+++.+. ...+++.|...++|+++.||..++.+|..+....+
T Consensus 141 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 141 DERAVEPLIKALKDEDGWVRQSAADALGEIG----GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 5577888888888888889999999999875 35689999999999999999999999977765543
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=7.8e-10 Score=115.59 Aligned_cols=184 Identities=18% Similarity=0.209 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchh
Q psy10461 1027 GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVS 1106 (1359)
Q Consensus 1027 ~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~ 1106 (1359)
....+.+++.|.+.+++++..++.+|..+.. ...++.+..+++|.++.||..++..++.+... +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~--~--- 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE--R--- 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G---
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--H---
Confidence 3467778899999999999988788776431 26788999999999999999999999988531 1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHH
Q psy10461 1107 AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPA 1186 (1359)
Q Consensus 1107 ~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPa 1186 (1359)
....++.+|.|....||..|+.+|+.+ +....++.|+..++..+..+|..++.+++.+.. ...++.
T Consensus 77 ------~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~ 142 (201)
T 3ltj_A 77 ------AVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD----ERAVEP 142 (201)
T ss_dssp ------GHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----GGGHHH
T ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHH
Confidence 223446788999999999999999986 445678888888888888899999999998753 468999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1187 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1187 LLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
|+..++|+++.||..++.+|+.+ |. ...++.|..++.|.+..||..|..++..+
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~----~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEI----GG------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH----CS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh----Cc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998776 32 46788888899999999999888888765
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=6.7e-10 Score=116.99 Aligned_cols=183 Identities=19% Similarity=0.202 Sum_probs=149.6
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH
Q psy10461 1029 LGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR 1108 (1359)
Q Consensus 1029 Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k 1108 (1359)
.++.|.+.|.+.++.++..++.+|..+.. ...+|.+..+++|.++.||..++..++.+... .
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-------~ 81 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------R 81 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-------G
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------H
Confidence 45667788888899999888777776431 26789999999999999999999999998631 1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHH
Q psy10461 1109 EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM 1188 (1359)
Q Consensus 1109 E~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLL 1188 (1359)
....++.+|+|....||.+|+.+|+.++ ....++.|+..++..+..+|..++.+++.+. ....++.|+
T Consensus 82 ----~~~~L~~~l~~~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~ 149 (211)
T 3ltm_A 82 ----AVEPLIKALKDEDGWVRQSAAVALGQIG----DERAVEPLIKALKDEDWFVRIAAAFALGEIG----DERAVEPLI 149 (211)
T ss_dssp ----GHHHHHHHTTCSSHHHHHHHHHHHHHHC----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----CGGGHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Confidence 2234467889999999999999999874 4567888999898888889999999999874 346899999
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1189 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1189 nlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
..++|+++.||..++.+|+.+ +. ..+++.|..++.|.+..||..|..+|..+.
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~----~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEI----GG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHH----CS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHHHHh----Cc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 999999999999999998776 32 467888888999999999999888887765
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=2.8e-10 Score=119.04 Aligned_cols=188 Identities=20% Similarity=0.142 Sum_probs=154.6
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhC
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG 1060 (1359)
.++-....+.++.+++|+++.||..|+..++.+... ..++.|.+.|.+.++.++..++.+|+.+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---
Confidence 456678889999999999999999999999987531 245667788888899999888777776521
Q ss_pred CCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10461 1061 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1061 ~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IA 1140 (1359)
...++.+..++.|.++.||.+++..++.+.... ....++.+|.|....||..|+.+|+.+.
T Consensus 75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-----------GHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 267899999999999999999999999985411 2234567889999999999999999874
Q ss_pred HHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHH
Q psy10461 1141 KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209 (1359)
Q Consensus 1141 k~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~I 1209 (1359)
....++.|+..++..+..+|..++.+++.+. ....++.|...++|+++.||..++.+|+.+
T Consensus 136 ----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 136 ----DERAVEPLIKALKDEDGWVRQSAADALGEIG----GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4577888888888888889999999999873 456899999999999999999999998664
No 47
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.19 E-value=3.5e-09 Score=135.72 Aligned_cols=387 Identities=13% Similarity=0.079 Sum_probs=231.0
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHh-------hccCchhH-HHHHHHHHHHH
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYA-------FQEQTTED-VVMLNGFGTIV 973 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLpl-------Lqd~~~eD-~v~lkaLg~La 973 (1359)
..+++.++..+. ++.+|..|++++..++..-.+.... .+...++..++.. +.+...+. ..+++.|..++
T Consensus 240 ~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~ 316 (963)
T 2x19_B 240 EALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALG 316 (963)
T ss_dssp HHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345666666663 6789999999999998743222111 1122233322221 12111111 34555566655
Q ss_pred hhccccc------ccchHhHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHhh--------hhhH--HhHHHHHHHH
Q psy10461 974 NQLGKRV------KPYLPQICGTILWRLNN-----KSAKVRQQAADLISRIAVVMK--------TCQE--EKLMGHLGVV 1032 (1359)
Q Consensus 974 e~Lg~~i------kPyl~qILpiIl~LL~D-----es~~VR~aAAe~Is~LA~vl~--------~~~e--~~lL~~Ll~i 1032 (1359)
+.....+ .+++..++..++....+ .+..|+..+.+.|..++..+. .+.. ...+..++.+
T Consensus 317 ~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 396 (963)
T 2x19_B 317 ENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV 396 (963)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5433322 26677888888877775 466688899999999987331 1111 3566677777
Q ss_pred HHHHhc--------ccC-------hHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHh----cCCCHHHHHHHHHH
Q psy10461 1033 LYEYLG--------EEY-------PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL----KNRHEKVQENCIDL 1093 (1359)
Q Consensus 1033 Lle~L~--------De~-------pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL----kDr~~rVR~AAiel 1093 (1359)
++..+. ++. .+.+..+...+..++...|.. .+..+++.+...+ .+.+|+.+++++.+
T Consensus 397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~----~l~~~~~~l~~~l~~~~~~~~w~~~eaal~a 472 (963)
T 2x19_B 397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE----LLSNLYDKLGRLLTSSEEPYSWQHTEALLYG 472 (963)
T ss_dssp HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 777662 011 122344556677777776522 1233444444455 56789999999999
Q ss_pred HHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHhhhcccchhHHHHH
Q psy10461 1094 VGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-----DVLATLLNNLKVQERQNRVCTT 1168 (1359)
Q Consensus 1094 Ig~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe-----dVlp~LL~~Lk~qe~~VRv~ta 1168 (1359)
|+.+++.+.+..... +.++.. ++.-|.+.+..||..++.++|.+++.+..+ .+++.|+..|.. ..||..++
T Consensus 473 l~~i~~~~~~~~~~~-l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~ 548 (963)
T 2x19_B 473 FQSIAETIDVNYSDV-VPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSV 548 (963)
T ss_dssp HHHHTTSCCSSCCSH-HHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHH
T ss_pred HHHHHhhcCchhhHH-HHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 999998765433221 222222 111233345679999999999999876532 456666766643 67888999
Q ss_pred HHHHHHhhhcC----cc--ccHHHHHHhcCC--CCchhHHHHHHHHHHHHHHhh-hhchhhHHhHHHHHHHHHh----c-
Q psy10461 1169 VAIAIVAETCS----PF--TVLPALMNEYRV--PELNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALM----D- 1234 (1359)
Q Consensus 1169 ~AIg~LAea~g----P~--~VLPaLLnlLkD--pE~nVR~~VlkaLs~Iae~IG-~~~kdYL~~VlPlLedaL~----D- 1234 (1359)
.+|..+++.|+ |+ .++..|.+.+.. -..++|..++.+++.++..++ .....|+..+++.+...+. .
T Consensus 549 ~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 628 (963)
T 2x19_B 549 STLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI 628 (963)
T ss_dssp HHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998875 43 566666666664 356789999999999987776 5566788777765554432 1
Q ss_pred cChHHHH---HHHHHHHHHHhhhcCC-C----------------chhHHhhhHHhhhcccc------cCChHHHHHHHHH
Q psy10461 1235 RDLVHRQ---TACATIKHMALGVYGF-G----------------CEDALTHLLNYVWPNIF------ETSPHLVQAFMDA 1288 (1359)
Q Consensus 1235 ~D~~VRq---tA~saIk~LAl~~~gl-G----------------~EdaliHlLnlvlPnI~------Etsp~Vi~~ilea 1288 (1359)
.+...+. .....+..++..+... + ..+.+..+...+||-+. -.++.+...+..+
T Consensus 629 ~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~ 708 (963)
T 2x19_B 629 PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAI 708 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 1333333 2333444444333221 0 11223344444554322 1456788888888
Q ss_pred HHHHHHhhchH
Q psy10461 1289 VEGLRVALGPV 1299 (1359)
Q Consensus 1289 LeaLr~aLG~~ 1299 (1359)
+..+..++|..
T Consensus 709 l~~~~~~~~~~ 719 (963)
T 2x19_B 709 FEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHSSST
T ss_pred HHHHHHhhccc
Confidence 88888888853
No 48
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.17 E-value=1.7e-08 Score=130.36 Aligned_cols=371 Identities=12% Similarity=0.151 Sum_probs=222.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhcc---CchhH----HHHHHHHHHHHhhcc-c--cccc-
Q psy10461 914 DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQE---QTTED----VVMLNGFGTIVNQLG-K--RVKP- 982 (1359)
Q Consensus 914 Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd---~~~eD----~v~lkaLg~Lae~Lg-~--~ikP- 982 (1359)
++.+.+|..|...|..++..+|.. + .+.++..+...+++ ....+ +.++.+||.+++.+. . -+..
T Consensus 372 ~d~~s~R~aa~~~L~~l~~~~~~~-v----~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~ 446 (960)
T 1wa5_C 372 SDTDTRRRACTDFLKELKEKNEVL-V----TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST 446 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHCHHH-H----HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCB
T ss_pred ccccCcHHHHHHHHHHHHHHcchh-H----HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccc
Confidence 445689999999999999988832 2 22333333333331 11122 678889999987531 1 1221
Q ss_pred ----chHhH-HHHHHHhhcCC---CHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Q psy10461 983 ----YLPQI-CGTILWRLNNK---SAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKA 1054 (1359)
Q Consensus 983 ----yl~qI-LpiIl~LL~De---s~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~a 1054 (1359)
.+.++ ...+.+.++|. .+.||.+|++++++++..+. .+.+..+++.++..|.+..+-|...++.||..
T Consensus 447 ~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~ 522 (960)
T 1wa5_C 447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQTDEYVVYTYAAITIEK 522 (960)
T ss_dssp CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 33333 34566667887 99999999999999998774 35678888999999988778888888899999
Q ss_pred HHHHhC----------CCCCCCchhchHHHHHHHhcCCC---HH--HHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHH
Q psy10461 1055 IVNVIG----------MTKMTPPIKDLLPRLTPILKNRH---EK--VQENCIDLVGRIADRGPEYVSAREWMRICFELLE 1119 (1359)
Q Consensus 1055 Ia~vlG----------~~~lsp~l~~lLP~L~~LLkDr~---~r--VR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLe 1119 (1359)
++...+ ...+.|++.+++..+..++.... .+ ....++++|+.++....+.+.+. ...++..+..
T Consensus 523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~ 601 (960)
T 1wa5_C 523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIE 601 (960)
T ss_dssp HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHH
T ss_pred HHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHH
Confidence 887432 23467777778888777776531 22 44678888888877544433332 2223333333
Q ss_pred HH----Hh-hHHHHHHHHHHHHHHHHHHhCch-------hHHHHHHHhhhcccchhHHHHHHHHHHHhhhc---Ccc--c
Q psy10461 1120 LL----KA-HKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC---SPF--T 1182 (1359)
Q Consensus 1120 lL----kD-~~~sVR~AAv~tLg~IAk~~Gpe-------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~---gP~--~ 1182 (1359)
.+ ++ .....+..++++++.|+...+++ .+++.+...|..+...+.-.+...++.+.+.. .++ .
T Consensus 602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 681 (960)
T 1wa5_C 602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKP 681 (960)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGG
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHH
Confidence 33 22 25567788999999999986764 33444444444332223333445555555443 333 6
Q ss_pred cHHHHH--HhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCch
Q psy10461 1183 VLPALM--NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE 1260 (1359)
Q Consensus 1183 VLPaLL--nlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~E 1260 (1359)
++|.++ ..++.+. ++. .++..|..+....+..... +..++-.+.+++.+... +..++..+..++..+.+
T Consensus 682 ~~~~l~~~~~~~~~~-~~~-~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~---- 752 (960)
T 1wa5_C 682 LAQPLLAPNVWELKG-NIP-AVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDM---- 752 (960)
T ss_dssp GHHHHTSGGGGCCTT-THH-HHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCH----
T ss_pred HHHHHcCHHHhcCCC-Cch-hHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCH----
Confidence 788887 6676542 443 4555664444433322111 23455556666655542 36678888888765543
Q ss_pred hHHhhhHHhhh----cccccC-ChHHHHHHHHHHHHHHHhhchHHHHH
Q psy10461 1261 DALTHLLNYVW----PNIFET-SPHLVQAFMDAVEGLRVALGPVRILQ 1303 (1359)
Q Consensus 1261 daliHlLnlvl----PnI~Et-sp~Vi~~ileaLeaLr~aLG~~~ll~ 1303 (1359)
..+..+++.++ +.+... .+.++..++..+..++...|++.+++
T Consensus 753 ~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 800 (960)
T 1wa5_C 753 NRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIH 800 (960)
T ss_dssp HHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHH
Confidence 22444444444 443322 35566667777777777777765443
No 49
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.11 E-value=4.3e-09 Score=133.46 Aligned_cols=413 Identities=13% Similarity=0.067 Sum_probs=258.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHH--HHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccchHh
Q psy10461 910 DDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLE--EQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYLPQ 986 (1359)
Q Consensus 910 ~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~--~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl~q 986 (1359)
..+...+..-...|+.+++.+.. |+.+....+. .-.++.|+.++.+..... ..++.+|+.++.....+ .-....
T Consensus 254 ~~~~~~~~~~~~~a~~alt~i~~--g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R-~~I~~~ 330 (810)
T 3now_A 254 DKLLAPDMESKVRVTVAITALLN--GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKA-KALCEQ 330 (810)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHS--SSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHH-HTTHHH
T ss_pred HHhccCChHhHHHHHHHHHHHhc--CCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHH-HHHHHc
Confidence 45555666666777777777664 3322222111 134566667776554333 57777788766552211 111122
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh-----hHHhHHHHHHHHHHHHhccc--ChHHHHHHHHHHHHHHHHh
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTC-----QEEKLMGHLGVVLYEYLGEE--YPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~-----~e~~lL~~Ll~iLle~L~De--~pEVl~siL~AL~aIa~vl 1059 (1359)
-++.|..+++.++..+|..|+..|++++..-+.. ....-+..+++.|...|... +++++..++++|..+...-
T Consensus 331 gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~ 410 (810)
T 3now_A 331 GVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA 410 (810)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH
T ss_pred CcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc
Confidence 2389999999999999999999999998533211 11234566788888888766 7889999989998884321
Q ss_pred CCC-CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-C-----------chh----------hHH-HH----
Q psy10461 1060 GMT-KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGP-E-----------YVS----------ARE-WM---- 1111 (1359)
Q Consensus 1060 G~~-~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~-e-----------~v~----------~kE-~m---- 1111 (1359)
..+ .+. .....+|.|+.+++..+..++..++.+|+.|+.... . +.. ..+ .-
T Consensus 411 ~vk~~lv-~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 411 ECKEKLI-EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHH-HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 100 000 012589999999998889999999999999987211 0 000 000 10
Q ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc
Q psy10461 1112 -----RICFELLELLKAHKKAIRRATVNTFGYIAKAIGP------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP 1180 (1359)
Q Consensus 1112 -----rIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP 1180 (1359)
..+..|+.+|+.....||+.|+.+|+.|+..-.. +.+++.|+..|++.+...|..++.|++.++-.-.|
T Consensus 490 ~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 1233456778888899999999999999853110 13567788888877667788889999888754332
Q ss_pred ---------cccHHHHHHhcCCC-CchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1181 ---------FTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1181 ---------~~VLPaLLnlLkDp-E~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
..++|.|+++|... ....++.++++|..++..-.......+ .-.+|.|..++.+.+..+|..|+.+|..
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 24799999999854 334567899999887753211111222 2467888889989999999999999999
Q ss_pred HHhhhcCCCchhHH--hhhHHhhhcccccCChHHHHHHHHHHHHHHHh-h-chHH------HHHhHhhhhccccccc-hh
Q psy10461 1250 MALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVA-L-GPVR------ILQYVLQGLFHPARKV-RD 1318 (1359)
Q Consensus 1250 LAl~~~glG~Edal--iHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~a-L-G~~~------ll~~vLpgLfhpA~kv-rd 1318 (1359)
|+.+-.. ....+ ...++.++..+...+..++..+..+|..++.. - .... .+..+..-+-+...++ ..
T Consensus 650 La~~~~~--~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~ 727 (810)
T 3now_A 650 LVMSEDV--IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHR 727 (810)
T ss_dssp HTTSHHH--HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHH
T ss_pred HhCChHH--HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHH
Confidence 8743211 11111 01344455555557778887777777666541 1 1111 2223333333333333 35
Q ss_pred hHHHHHHhhh
Q psy10461 1319 VYWKIYNSLY 1328 (1359)
Q Consensus 1319 ~~WRvyn~~y 1328 (1359)
..|=++|.+.
T Consensus 728 A~~aL~NL~~ 737 (810)
T 3now_A 728 GIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6788887655
No 50
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.6e-09 Score=119.63 Aligned_cols=177 Identities=9% Similarity=0.103 Sum_probs=146.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HHhhCCCchh-hHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhC-ch----
Q psy10461 1075 LTPILKNRHEKVQENCIDLVGR-IADRGPEYVS-AREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIG-PH---- 1146 (1359)
Q Consensus 1075 L~~LLkDr~~rVR~AAielIg~-IA~~g~e~v~-~kE~mrIc~eLLelL-kD~~~sVR~AAv~tLg~IAk~~G-pe---- 1146 (1359)
+...+++.+|+-|.++++.|.. +...+..... ..++..++..+...| +|.+..||.+|+++++.|++.++ +.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3446689999999999999999 8765554431 212344666667888 78899999999999999999887 32
Q ss_pred ---hHHHHHHHhhhcccchhHHHHHHHHHHHhhhc------C-ccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh-
Q psy10461 1147 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETC------S-PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE- 1215 (1359)
Q Consensus 1147 ---dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~------g-P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~- 1215 (1359)
.+++.|++.++.....||-.+..|+..+++.+ + ...+++.|+..|+.+.+.||..+++.|..+++..+.
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 46778888888777778888889999999988 3 447999999999999999999999999999988773
Q ss_pred --hchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1216 --MGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1216 --~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
.+..|+ ..++|.|..++.|.+..||..|..++..++
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 355688 999999999999999999999999988886
No 51
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.07 E-value=1.3e-09 Score=115.91 Aligned_cols=227 Identities=16% Similarity=0.068 Sum_probs=166.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh-CCC-CC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI-GMT-KM 1064 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl-G~~-~l 1064 (1359)
.++.+..++++.++.+|..|+.++.+++..-......-.-...++.|...|.+.++++...++.+|..++..- ... .+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3677888899999999999999999998644311111111246788888998888899888888888875420 000 00
Q ss_pred CCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q psy10461 1065 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 1144 (1359)
Q Consensus 1065 sp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~G 1144 (1359)
.....+|.++.++++.++.||..++.+|+.++....+.....--...+..++.+|++....+|..|+.+|+.|+..-.
T Consensus 83 --~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 83 --VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp --HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred --HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 011478999999999999999999999999986332211111001245566788998889999999999999986311
Q ss_pred c-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-------ccccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1145 P-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1145 p-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-------P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
. ..+++.|+..++..+..+|..++.+++.++.... ...+++.|++.++++++.||..++++|+.++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 1 2367788888888777899999999998875321 1268999999999999999999999999988
Q ss_pred HHhhh
Q psy10461 1211 EYIGE 1215 (1359)
Q Consensus 1211 e~IG~ 1215 (1359)
..-+.
T Consensus 241 ~~~~~ 245 (252)
T 4hxt_A 241 SGGWL 245 (252)
T ss_dssp HTCBC
T ss_pred cCCCc
Confidence 76554
No 52
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.05 E-value=3.1e-08 Score=127.45 Aligned_cols=343 Identities=12% Similarity=0.100 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhcc-----Cch-hHHHHHHHHHHHHhhcccccccchHhHHHHH
Q psy10461 918 QYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQE-----QTT-EDVVMLNGFGTIVNQLGKRVKPYLPQICGTI 991 (1359)
Q Consensus 918 ~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd-----~~~-eD~v~lkaLg~Lae~Lg~~ikPyl~qILpiI 991 (1359)
.+|+.+.+.+..++..+|.. +.+ .++..+...++. ..- +.++++.+|+.+++.+.....+++.++++++
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~-~l~----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l 510 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDY-ILE----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL 510 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTH-HHH----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH-HHH----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 68999999999999877733 222 233333333322 111 2278888999999999877789999999966
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhc
Q psy10461 992 LWRLN-NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKD 1070 (1359)
Q Consensus 992 l~LL~-Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~ 1070 (1359)
..+.. |.++.||..+++++++++..+... .+.+..+++.|+..| + +.|...++.++..+++..+.. +.|++.+
T Consensus 511 ~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~-l~p~~~~ 584 (971)
T 2x1g_F 511 AEIPYEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ-LKPYADP 584 (971)
T ss_dssp HHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH-HHHHHHH
T ss_pred HhcCccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh-ccccHHH
Confidence 55542 579999999999999999988742 367888888888888 4 778888889999999876533 4555666
Q ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCC-CchhhHHHHHHHHHHHHHHH----hh--HHHHHHHHHHHHHHHHH
Q psy10461 1071 LLPRLTPILKN--RHEKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLK----AH--KKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1071 lLP~L~~LLkD--r~~rVR~AAielIg~IA~~g~-e~v~~kE~mrIc~eLLelLk----D~--~~sVR~AAv~tLg~IAk 1141 (1359)
++..+..++.+ -+..++..++++|+.++...+ +..... +..++..++..+. .. ...-+...+..++.|+.
T Consensus 585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 66666666665 457899999999999987532 222221 2233333333222 11 11234445555555543
Q ss_pred HhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc--ccHHHHHHhcCCC--CchhHHHHHHHHHHHHHHhhhhc
Q psy10461 1142 AIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMG 1217 (1359)
Q Consensus 1142 ~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~--~VLPaLLnlLkDp--E~nVR~~VlkaLs~Iae~IG~~~ 1217 (1359)
.+. .+...-...+-. .+ ..+.+.++ .++|.+...+.+. ...|...+|..++.++..+|..+
T Consensus 664 ~~~----------~l~~~~~~~~~~---~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~ 728 (971)
T 2x1g_F 664 LFS----------SLNTDVDEQATD---QP--IVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSF 728 (971)
T ss_dssp HHH----------HHTC------------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHh----------hcCCCcCccccc---cc--CCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhc
Confidence 321 111000000000 00 01112222 6888888887542 45789999999999999999888
Q ss_pred hhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCch----hHHhhhHHhhhccc-----------ccCChHHH
Q psy10461 1218 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE----DALTHLLNYVWPNI-----------FETSPHLV 1282 (1359)
Q Consensus 1218 kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~E----daliHlLnlvlPnI-----------~Etsp~Vi 1282 (1359)
..|+..+++.|...+..... ......+..+ +..+|.+ ..+.+++..+...+ .+..|+++
T Consensus 729 ~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~---i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~ 802 (971)
T 2x1g_F 729 QPMLQDLCLFIVASFQTRCC---APTLEISKTA---IVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTM 802 (971)
T ss_dssp CTHHHHHHHHHHHHCC--CC---HHHHHHHHHH---HTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCc---hHHHHHHHHH---HHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHH
Confidence 88999999988766654221 1233344443 3445542 23333333322221 22467777
Q ss_pred HHHHHHHHHHH
Q psy10461 1283 QAFMDAVEGLR 1293 (1359)
Q Consensus 1283 ~~ileaLeaLr 1293 (1359)
...+.-+..+.
T Consensus 803 ~~~f~ll~~~l 813 (971)
T 2x1g_F 803 ETFFGCLTQII 813 (971)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 53
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.04 E-value=3e-07 Score=117.89 Aligned_cols=363 Identities=13% Similarity=0.084 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhc---cCc-hhH-HHHHHHHHHHHhhcccccccchHhHHHHHH
Q psy10461 918 QYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ---EQT-TED-VVMLNGFGTIVNQLGKRVKPYLPQICGTIL 992 (1359)
Q Consensus 918 ~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLq---d~~-~eD-~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl 992 (1359)
.+|+.+.+.|..++..+|.. +.+.+++.+...++ +.. -.. +.++.+||.+++.+.....+++.++++.+.
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~-----~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~ 496 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAE-----LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP 496 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHH-----HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHccHH-----HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 46888999999988877744 22233443334442 111 122 678999999999988777889999999766
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchH
Q psy10461 993 WRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLL 1072 (1359)
Q Consensus 993 ~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lL 1072 (1359)
.+ .++++.||..+++++++++..+... .+++..+++.|++.|.+ +.|...++.+|..++...+ +.+.|++.+++
T Consensus 497 ~l-~~~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~-~~l~p~~~~il 570 (963)
T 2x19_B 497 RI-SISNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK-YDLPPYAANIV 570 (963)
T ss_dssp GS-CCCSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG-GGCTTTHHHHH
T ss_pred hC-CCCcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH-HHHHhhHHHHH
Confidence 54 4468999999999999999988732 36788888999999965 8888889999999998765 34778888888
Q ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHHhhCC-CchhhHHHHHHHHHHHHHHHh----h-HH---HHHHHHHHHHHHHHH
Q psy10461 1073 PRLTPILKN--RHEKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKA----H-KK---AIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1073 P~L~~LLkD--r~~rVR~AAielIg~IA~~g~-e~v~~kE~mrIc~eLLelLkD----~-~~---sVR~AAv~tLg~IAk 1141 (1359)
..+..++.. -+..+|..++++|+.++...+ +.+.+. +..++..+...+.. . .. ..+..+.++|+.+++
T Consensus 571 ~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~ 649 (963)
T 2x19_B 571 AVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT 649 (963)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888887764 467899999999999987543 222221 22233333332221 1 12 234467777888888
Q ss_pred HhCc---------------------h-------hHHHHHHHhhh--cccchhHHHHHHHHHHHhhhcCc----c--ccHH
Q psy10461 1142 AIGP---------------------H-------DVLATLLNNLK--VQERQNRVCTTVAIAIVAETCSP----F--TVLP 1185 (1359)
Q Consensus 1142 ~~Gp---------------------e-------dVlp~LL~~Lk--~qe~~VRv~ta~AIg~LAea~gP----~--~VLP 1185 (1359)
.++. + .+.+.++..+. .++..+...++.+++.++..+|. + .+++
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~ 729 (963)
T 2x19_B 650 TLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCE 729 (963)
T ss_dssp HCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHH
T ss_pred HcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 7762 1 12222232332 23345666667788887777763 2 3444
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhhh--hchhhHHhH----HHHHHHHHh-c--cChHHHHHHHHHHHHHHhhhcC
Q psy10461 1186 ALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAV----TPLLEDALM-D--RDLVHRQTACATIKHMALGVYG 1256 (1359)
Q Consensus 1186 aLLnlLkDpE~nVR~~VlkaLs~Iae~IG~--~~kdYL~~V----lPlLedaL~-D--~D~~VRqtA~saIk~LAl~~~g 1256 (1359)
.++..++.. + -..++..++.+...+|. ...+++..+ +.++..++. | ++++++......+..+...+..
T Consensus 730 ~l~~~~~~~-~--~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~ 806 (963)
T 2x19_B 730 MLGRMYSTI-P--QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPD 806 (963)
T ss_dssp HHHHHHHHS-C--CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHcC-C--ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcH
Confidence 444444431 1 12466666666664433 223344332 333222332 2 3688988777777777544433
Q ss_pred CCc-hhH-HhhhHHhhhcccccCChHHHHHHHHHHHHHHHh
Q psy10461 1257 FGC-EDA-LTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 1295 (1359)
Q Consensus 1257 lG~-Eda-liHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~a 1295 (1359)
.-. ... +.++++.++-.+....+++...+++.+..+...
T Consensus 807 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 807 LFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp GGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 211 122 455666666666667778887788877766544
No 54
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=99.02 E-value=1.8e-10 Score=90.80 Aligned_cols=39 Identities=82% Similarity=1.423 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHhhhhhccCCCCChHHHHhhcCCCceec
Q psy10461 783 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 821 (1359)
Q Consensus 783 ~m~pe~~~~~~~e~~i~~rnf~~~DEEm~ki~p~glkVV 821 (1359)
.|||+++|.|+|+++|++||+|++|||++.++|+|||||
T Consensus 1 ~mtpe~~~~~~~~~ei~~RNrpltDEeLD~mLP~GYkIl 39 (39)
T 3lqv_P 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCCCHHHHHHTCCSSEEEC
T ss_pred CCCHHHHHHHHhhccchhhcCCCCHHHHHHhCCCCcccC
Confidence 499999999999999999999999999999999999986
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.02 E-value=2.4e-07 Score=114.85 Aligned_cols=370 Identities=12% Similarity=0.077 Sum_probs=222.8
Q ss_pred hHHHHHhhhc--CCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccc
Q psy10461 903 EIINRVVDDL--KDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 903 eiI~~Ll~~L--KDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ 979 (1359)
.+++.+...| .|.++.||+.|+-++.++.. +.|+.+.. ..+++.+..++.|....+ ..++.++..++..-+..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~~---~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVPM---GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCCC---CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcCc---hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 3455556677 89999999999999999998 55553331 035566666776655544 44455566666544443
Q ss_pred cccchHhHHHHHHHhhcC--------------------------------CCHHHHHHHHHHHHHHHHHhh---------
Q psy10461 980 VKPYLPQICGTILWRLNN--------------------------------KSAKVRQQAADLISRIAVVMK--------- 1018 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~D--------------------------------es~~VR~aAAe~Is~LA~vl~--------- 1018 (1359)
..++++.++..+..++.+ +++..+....+++..+...+.
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 445555555554444321 234444444343333321110
Q ss_pred ----------hhh--------HHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc
Q psy10461 1019 ----------TCQ--------EEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK 1080 (1359)
Q Consensus 1019 ----------~~~--------e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk 1080 (1359)
.|. ...++...+..|...|.+..+++.-.++.++..++..-+. ...+..+.+.++..++
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~~i~~~L~ 378 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhc
Confidence 000 0233444455555556555677766666666666543210 0135677888888888
Q ss_pred -CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHhhh
Q psy10461 1081 -NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLK 1157 (1359)
Q Consensus 1081 -Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--edVlp~LL~~Lk 1157 (1359)
|....||..+++++-.++.. ..+..++.+|+..+.+....+|+.++..++.+|..+.+ +.++..|++.++
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~~-------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~ 451 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCDR-------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIR 451 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred cCCCHhHHHHHHHHHHHHcCh-------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 89999999999998888642 23566888888889888889999999999999999876 467788888777
Q ss_pred cccchhHHHHHHHHHHHhhhcCc--cccHHHHHHhcCCCCchhHHHHH----HHHHHHHHHhhhhchhhH--HhHHHHHH
Q psy10461 1158 VQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVL----KALSFLFEYIGEMGKDYI--YAVTPLLE 1229 (1359)
Q Consensus 1158 ~qe~~VRv~ta~AIg~LAea~gP--~~VLPaLLnlLkDpE~nVR~~Vl----kaLs~Iae~IG~~~kdYL--~~VlPlLe 1229 (1359)
....++.-.+...+-.+...... ...+..++..+.+++. +..++ |.|+..++.+... +++ ..++..+.
T Consensus 452 ~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~--~~~li~~~~wilGEy~~~~~~~--~~~~p~~~l~~l~ 527 (621)
T 2vgl_A 452 IAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPAC--HENLVKVGGYILGEFGNLIAGD--PRSSPLIQFNLLH 527 (621)
T ss_dssp HHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHTHHHHSS--TTSCHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccc--hHHHHHHHHHHhcchHHHhccc--CCCCHHHHHHHHH
Confidence 54444443333444433322211 1466777888888775 44455 5555555444321 111 13344444
Q ss_pred HHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHH
Q psy10461 1230 DALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR 1293 (1359)
Q Consensus 1230 daL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr 1293 (1359)
+-+.+++..+|..+..++..+...++. ..+.+.++|..... +.+.+++|+.++.+.+.-+.
T Consensus 528 ~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~-~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 528 SKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQ-LKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHH-HSCSSHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHc
Confidence 456678899998777777777654432 22344444333221 12578899999888775543
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.02 E-value=2.3e-09 Score=113.97 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=161.6
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc-
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK- 981 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik- 981 (1359)
.++.|+..|+++++.+|..|+..|..++..-. +....-+....+..|+.++++...+. ..++.+++.++........
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 47889999999999999999999999887432 11111111235666777777765444 5666677777654222111
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
-.-..+++.+..+++++++.||..|+.++++++..-......-.-...++.|.+.|.+..++++..++.+|..++..-..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 11235789999999999999999999999999853222111111234678888889888899999888888888642100
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk 1141 (1359)
..-.-.....+|.+..++++.++.||..++.+|..++....+......-...+..++.+|++....+|+.|+.+|+.|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 00000012488999999999999999999999999986222111110001134456677888888999999999999987
Q ss_pred HhC
Q psy10461 1142 AIG 1144 (1359)
Q Consensus 1142 ~~G 1144 (1359)
..+
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 643
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.00 E-value=2.8e-09 Score=114.52 Aligned_cols=221 Identities=17% Similarity=0.116 Sum_probs=159.7
Q ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCC-chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH
Q psy10461 1030 GVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR 1108 (1359)
Q Consensus 1030 l~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp-~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k 1108 (1359)
++.++..|.+.++++...++.+|..+...-. ..... .....+|.++.++++.++.||..++.+|+.++....+.....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC-chHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5567778888888888888788865443210 00000 012578999999999999999999999999986332211111
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC--
Q psy10461 1109 EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-- 1179 (1359)
Q Consensus 1109 E~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-- 1179 (1359)
--...+..++.+|++....||..|+.+|+.|+..-.. ..+++.|+..++..+..+|..++.+++.++....
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 0011445567888988899999999999999763221 2467788888988877899999999999885331
Q ss_pred -----ccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1180 -----PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1180 -----P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
...++|.|++.++++++.||..++++|+.++..-......++ ..++|.|.+++.+.+..+|..|+.+|..|+
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 137899999999999999999999999888732211122222 358888999999999999998888887764
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.97 E-value=3.1e-08 Score=117.99 Aligned_cols=341 Identities=14% Similarity=0.125 Sum_probs=216.0
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchh-hhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADID-SRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 905 I~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~-~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
++.|+..|+++++.++..|+..|..++.. .+... .-...-.+..|+.++.+...+. ..++.+|..++..- ...+.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~ 80 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKL 80 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHH
Confidence 67788899999999999999999998742 22111 1111234456666777654444 56666677776531 12221
Q ss_pred ch--HhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh--------cc--------cChH
Q psy10461 983 YL--PQICGTILWRLN-NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL--------GE--------EYPE 1043 (1359)
Q Consensus 983 yl--~qILpiIl~LL~-Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L--------~D--------e~pE 1043 (1359)
.+ ...+|.+..++. +.++.++..|+++|.+|+.. ..+ ...++...++.|...| ++ ..++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~-~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SST-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHh-HHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 11 345788888998 78999999999999999965 322 2334446777788877 22 2456
Q ss_pred HHHHHHHHHHHHHHHhCC-CCCCCchhchHHHHHHHhcC------CCHHHHHHHHHHHHHHHhh----------------
Q psy10461 1044 VLGSILGALKAIVNVIGM-TKMTPPIKDLLPRLTPILKN------RHEKVQENCIDLVGRIADR---------------- 1100 (1359)
Q Consensus 1044 Vl~siL~AL~aIa~vlG~-~~lsp~l~~lLP~L~~LLkD------r~~rVR~AAielIg~IA~~---------------- 1100 (1359)
+...++++|..++..-.. ..+.. ....+|.|+.++++ ...+++++++..+..++..
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 667787888877642100 00100 11578888887763 3456777777666665310
Q ss_pred -----------CCC-----------ch-------h--hHHH---HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHh--
Q psy10461 1101 -----------GPE-----------YV-------S--AREW---MRICFELLELLKAH-KKAIRRATVNTFGYIAKAI-- 1143 (1359)
Q Consensus 1101 -----------g~e-----------~v-------~--~kE~---mrIc~eLLelLkD~-~~sVR~AAv~tLg~IAk~~-- 1143 (1359)
|-. .+ . ..++ ...+..|+.+|+.. ...++++|+-+|..|+..-
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 000 00 0 0000 11333456677654 5789999999999886421
Q ss_pred ----------CchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc-----cccHHHHHHhcCCCCc------hhHHHH
Q psy10461 1144 ----------GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-----FTVLPALMNEYRVPEL------NVQNGV 1202 (1359)
Q Consensus 1144 ----------GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP-----~~VLPaLLnlLkDpE~------nVR~~V 1202 (1359)
.....++.|+..|+..+..++..++.++..++..-.- ..++|.|+++|..+++ +|...+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 1234567888889888888888889999988753210 1689999999997654 467777
Q ss_pred HHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhcc-ChHHHHHHHHHHHHHH
Q psy10461 1203 LKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDR-DLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1203 lkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~-D~~VRqtA~saIk~LA 1251 (1359)
|.+|..+...-........ .-.+|.|.+++... +..++..|+.+|..+.
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 8777766532222222222 46888899999888 7888888888887653
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.94 E-value=1.7e-07 Score=116.26 Aligned_cols=386 Identities=14% Similarity=0.108 Sum_probs=231.9
Q ss_pred HHHHhhhcCC---CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc
Q psy10461 905 INRVVDDLKD---ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 905 I~~Ll~~LKD---es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
+..|-..|++ .+...|+.++.++--+.. +|-+ +. .+.-+++.++++...+. ..+.-.+..+++.-.
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~-~G~d-~s-----~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--- 106 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFL-LGHD-ID-----FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--- 106 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHH-HSCC-CC-----SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH---
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCC-Cc-----hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc---
Confidence 4445556653 378889999998876644 6764 22 24555666777665554 333333333332222
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh--cccChHHHHHHHHHHHHHHHH
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL--GEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L--~De~pEVl~siL~AL~aIa~v 1058 (1359)
..+--+++.|..=++|+++.+|-.|..++++|.. .+++..+.+.+...| .|..|-|++.++-++..++..
T Consensus 107 -e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 107 -ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp -HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 3345567888888999999999999999999852 356677889999999 899999999988888888885
Q ss_pred hCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhh-------------H
Q psy10461 1059 IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH-------------K 1125 (1359)
Q Consensus 1059 lG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~-------------~ 1125 (1359)
. .+.+ ++ ..+++.+..++.|+++.|+.+++.++..++....+.+... ...++..|-.++.+. .
T Consensus 179 ~-p~~~-~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 179 S-PDLV-PM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS-VSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp C-GGGC-CC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTH-HHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred C-hhhc-Cc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 3 2322 11 3789999999999999999999999999987543211100 111111111222211 2
Q ss_pred HHHHHHHHHHHHHHHHHhCch------hHHHHHHHhhhc---------cc--chhHHHHHHHHHHHhhhcCcc---ccHH
Q psy10461 1126 KAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKV---------QE--RQNRVCTTVAIAIVAETCSPF---TVLP 1185 (1359)
Q Consensus 1126 ~sVR~AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~---------qe--~~VRv~ta~AIg~LAea~gP~---~VLP 1185 (1359)
...+-..++.|..++..-.++ +++..+++.+.. .+ ..|-+.++.++-.+.. .+. .++.
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~~~~~~~~ 332 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS--EPNLLVRACN 332 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC--cHHHHHHHHH
Confidence 334444444444443210111 233334433211 01 1233333333333321 111 4567
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHh-ccChHHHHHHHHHHHHHHhhhcCCCchhHHh
Q psy10461 1186 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALT 1264 (1359)
Q Consensus 1186 aLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~-D~D~~VRqtA~saIk~LAl~~~glG~Edali 1264 (1359)
.|...|.++++|+|..++.+|..++..-+. .+++....+.+..++. |.|..+|..+..++-.|+ .++-+.
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~-------~~~Nv~ 403 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC-------DRSNAQ 403 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC-------CHHHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc-------ChhhHH
Confidence 777778889999999999999887654321 1222223333444566 889999988888877764 334455
Q ss_pred hhHHhhhcccccCChHHHHHHHHHHHHHHHhhch--HHHHHhHhhhhccccccchhhHHHH
Q psy10461 1265 HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPARKVRDVYWKI 1323 (1359)
Q Consensus 1265 HlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG~--~~ll~~vLpgLfhpA~kvrd~~WRv 1323 (1359)
.++..+..++.+.+.+++..++.++..++.-..+ .-+++.++.-+-.....+.+..|..
T Consensus 404 ~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~ 464 (621)
T 2vgl_A 404 QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYR 464 (621)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 5666666666678888888888888887765443 3344544444443333444555533
No 60
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.93 E-value=2.2e-07 Score=121.15 Aligned_cols=373 Identities=9% Similarity=0.055 Sum_probs=213.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccc----------------
Q psy10461 916 NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGK---------------- 978 (1359)
Q Consensus 916 s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~---------------- 978 (1359)
+..+|......+..|+..-.|+.|++ +++.++..++. .... ..++.+|..+++...+
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~-----ll~~L~~~~~~-~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~ 186 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPE-----FIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKN 186 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTT-----HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchH-----HHHHHHHHHcc-ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 47899999999999999877787874 56666666652 2211 4556666666655442
Q ss_pred ccccchHhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhh---------------------------------------
Q psy10461 979 RVKPYLPQICGTILWRLNN-KSAKVRQQAADLISRIAVVMK--------------------------------------- 1018 (1359)
Q Consensus 979 ~ikPyl~qILpiIl~LL~D-es~~VR~aAAe~Is~LA~vl~--------------------------------------- 1018 (1359)
.++.++..|+..+...+++ .+..++..+.+++......+.
T Consensus 187 ~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~ 266 (1049)
T 3m1i_C 187 SMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKI 266 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCC
Confidence 1344566666666655543 345566666555543221111
Q ss_pred -hhh--HHhHHHHHHHHHHHHh------------------cccChHHHHHHHHHHHHHHHH----hCCC-CCCCchhchH
Q psy10461 1019 -TCQ--EEKLMGHLGVVLYEYL------------------GEEYPEVLGSILGALKAIVNV----IGMT-KMTPPIKDLL 1072 (1359)
Q Consensus 1019 -~~~--e~~lL~~Ll~iLle~L------------------~De~pEVl~siL~AL~aIa~v----lG~~-~lsp~l~~lL 1072 (1359)
... ....+..+++.++..+ .+.+.+....++..+..+... +... ...+.+..++
T Consensus 267 ~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 346 (1049)
T 3m1i_C 267 PQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAH 346 (1049)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 000 0001111111111111 122233333444444333222 2110 0112223344
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh------CCCchhhHHHHHHHHHHHHHH---------H------------h-h
Q psy10461 1073 PRLTPILKNRHEKVQENCIDLVGRIADR------GPEYVSAREWMRICFELLELL---------K------------A-H 1124 (1359)
Q Consensus 1073 P~L~~LLkDr~~rVR~AAielIg~IA~~------g~e~v~~kE~mrIc~eLLelL---------k------------D-~ 1124 (1359)
+.++.+..+.+..|+..+++....+++. ....+... +.+++..+++.+ . | .
T Consensus 347 ~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~-l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d 425 (1049)
T 3m1i_C 347 QYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEI-CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1049)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH-HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccch
Confidence 4444455677889999999999998872 11112111 333444333321 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhh------cccchhHHHHHHHHHHHhhhcCcc-------ccHHHHHHhc
Q psy10461 1125 KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK------VQERQNRVCTTVAIAIVAETCSPF-------TVLPALMNEY 1191 (1359)
Q Consensus 1125 ~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk------~qe~~VRv~ta~AIg~LAea~gP~-------~VLPaLLnlL 1191 (1359)
....|+++.+.|..++.. +++++++.+++.+. ..++..|.++..++|.|++.|+.. .|++.|+++.
T Consensus 426 ~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 236788999999999866 55666666555443 245678999999999999888642 3555555533
Q ss_pred C-----CCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCC------C-c
Q psy10461 1192 R-----VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF------G-C 1259 (1359)
Q Consensus 1192 k-----DpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~gl------G-~ 1259 (1359)
. |+.+-||..+|.+++.+++.+... .+|+..|++.|.+.+.|.+..|+..||.++..++-.|... | .
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~ 583 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 2 466778878999998888777642 5688999998888888889999999999999997654321 0 0
Q ss_pred hhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHHhhc
Q psy10461 1260 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 1297 (1359)
Q Consensus 1260 EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~aLG 1297 (1359)
+.-+..++..+...+.+...+-...+++++..+..+.|
T Consensus 584 ~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 00011222222222222344445678899988888887
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.92 E-value=1.9e-09 Score=115.89 Aligned_cols=235 Identities=14% Similarity=0.151 Sum_probs=153.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
-.+.++..|+++++.+|..|+..|..++.. ..+....-+....+..|+.++++...+. ..++.+++.++..-......
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 367788899999999999999999776664 2221221112235566777777765444 56666777776533222111
Q ss_pred ch-HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 983 YL-PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 983 yl-~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
.+ ..+++.|..+++++++.||..|+.+|++|+..-......-.-...++.|...|.+..++++..++.+|..++..-..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 11 24889999999999999999999999999754332111111224678888889888889999888888888642100
Q ss_pred CCCCC-chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10461 1062 TKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1062 ~~lsp-~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IA 1140 (1359)
. ... .....+|.++.++++.++.||..++.+|+.++....+.....--..+...++.+|.+....||+.|+.+|+.|+
T Consensus 172 ~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 172 Q-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp H-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred H-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 0 000 01357899999999999999999999999998532211110000013334455666666677777777777654
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.91 E-value=3.3e-07 Score=112.84 Aligned_cols=344 Identities=13% Similarity=0.086 Sum_probs=217.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
-++.|+..|+++++.++..|+..|..++..-... ...-...-.+..|+.+|.+...+. ..++.+|..|+..-+...+.
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~-k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV-KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3788999999999999999999999888521111 000001123455666676655444 56666777776531111111
Q ss_pred --chHhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc------------------ccC
Q psy10461 983 --YLPQICGTILWRLNN-KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG------------------EEY 1041 (1359)
Q Consensus 983 --yl~qILpiIl~LL~D-es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~------------------De~ 1041 (1359)
.-...++.|..+|.. .+..++..|+.+|.+|+..=. .+..++..-+++|...|. ..+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~--~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS--IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG--GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch--hhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 123567888888885 688999999999999986211 122333334555555431 124
Q ss_pred hHHHHHHHHHHHHHHHHhCC-C-CCCCchhchHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhCCC-------ch-
Q psy10461 1042 PEVLGSILGALKAIVNVIGM-T-KMTPPIKDLLPRLTPILK------NRHEKVQENCIDLVGRIADRGPE-------YV- 1105 (1359)
Q Consensus 1042 pEVl~siL~AL~aIa~vlG~-~-~lsp~l~~lLP~L~~LLk------Dr~~rVR~AAielIg~IA~~g~e-------~v- 1105 (1359)
+++..++.++|..++..-.. + .+-. ..-+++.|+.+++ +...+.+++|+.+|..|+..+.. +.
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 67888887888877532100 0 0000 1134566666654 24567889999999887653210 10
Q ss_pred ------------hh--HHH---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-----------HhCchhHHHHHHHhh
Q psy10461 1106 ------------SA--REW---MRICFELLELLKA-HKKAIRRATVNTFGYIAK-----------AIGPHDVLATLLNNL 1156 (1359)
Q Consensus 1106 ------------~~--kE~---mrIc~eLLelLkD-~~~sVR~AAv~tLg~IAk-----------~~GpedVlp~LL~~L 1156 (1359)
.. .++ ..+...|+.+|++ .+..++++|+.+|..|+. .+..+..++.|+..|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 00 011 1233455677865 478999999999998863 222345688889999
Q ss_pred hcccchhHHHHHHHHHHHhhhcCc-----cccHHHHHHhcCCCC--------chhHHHHHHHHHHHHHHhhhhchhhH-H
Q psy10461 1157 KVQERQNRVCTTVAIAIVAETCSP-----FTVLPALMNEYRVPE--------LNVQNGVLKALSFLFEYIGEMGKDYI-Y 1222 (1359)
Q Consensus 1157 k~qe~~VRv~ta~AIg~LAea~gP-----~~VLPaLLnlLkDpE--------~nVR~~VlkaLs~Iae~IG~~~kdYL-~ 1222 (1359)
...+..++..++.++..++....- ..++|.|+++|..+. .++...+|.+|..+...-....+..+ .
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 888878899999999999864432 168999999998763 35778888888766432122233333 4
Q ss_pred hHHHHHHHHHhcc--ChHHHHHHHHHHHHHH
Q psy10461 1223 AVTPLLEDALMDR--DLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1223 ~VlPlLedaL~D~--D~~VRqtA~saIk~LA 1251 (1359)
-.+|.|..++.+. ...++..|+.++..|+
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 6788899999875 5667777888998875
No 63
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.90 E-value=2.9e-07 Score=117.65 Aligned_cols=302 Identities=15% Similarity=0.104 Sum_probs=197.3
Q ss_pred hHHHHHhhhcC---CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCc-------hhH--HHHHHHHH
Q psy10461 903 EIINRVVDDLK---DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT-------TED--VVMLNGFG 970 (1359)
Q Consensus 903 eiI~~Ll~~LK---Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~-------~eD--~v~lkaLg 970 (1359)
+.+..|-..|. .+++.+|--|+-.|+-+....+.+ .+..|.+.+.+.+ .+. +.++.++|
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45666777776 678999999999999876655422 3455555555433 111 33444555
Q ss_pred HHHhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHH
Q psy10461 971 TIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILG 1050 (1359)
Q Consensus 971 ~Lae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~ 1050 (1359)
.+.-+.+ -.+++..|...+.|++..+|..||-.++.+- ++.|.. +.+..++..+.+ +...++++.+.-
T Consensus 463 la~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~--vGTgn~-~ai~~LL~~~~e---~~~e~vrR~aal 530 (963)
T 4ady_A 463 LAAMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCM--LGTGKP-EAIHDMFTYSQE---TQHGNITRGLAV 530 (963)
T ss_dssp HHSTTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCCCH-HHHHHHHHHHHH---CSCHHHHHHHHH
T ss_pred HHhcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh--cccCCH-HHHHHHHHHHhc---cCcHHHHHHHHH
Confidence 5443333 2578888888899889999988888877662 233332 333444444443 345567777666
Q ss_pred HHHHHHHHhCCCCCCCchhchHHHHHHHh-cCCCHHHHHHHHHHHHHH-HhhCCCchhhHHHHHHHHHHHHHH-HhhHHH
Q psy10461 1051 ALKAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGRI-ADRGPEYVSAREWMRICFELLELL-KAHKKA 1127 (1359)
Q Consensus 1051 AL~aIa~vlG~~~lsp~l~~lLP~L~~LL-kDr~~rVR~AAielIg~I-A~~g~e~v~~kE~mrIc~eLLelL-kD~~~s 1127 (1359)
+|+-+. +|. .+..+.++..+ .+.+|-||..++-+++.- |..|. .. .+..||..+ .|.++.
T Consensus 531 gLGll~--~g~-------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~------aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 531 GLALIN--YGR-------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NS------AVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHT--TTC-------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HH------HHHHHHHHHHHCSCHH
T ss_pred HHHhhh--CCC-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HH------HHHHHHHHhccCCcHH
Confidence 666552 232 25677777755 478999999999888854 33343 11 223344443 456788
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHhhh-cccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHH
Q psy10461 1128 IRRATVNTFGYIAKAIGPHDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL 1206 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~GpedVlp~LL~~Lk-~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaL 1206 (1359)
||++|+-.||.|+- |..+..+.++..|. ..+..+|..++.|+|.++-.-+-..++..|..+++|++..||.+++.+|
T Consensus 594 VRraAViaLGlI~~--g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 594 VRRAAVIALGFVLL--RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHHHHHTS--SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999999998854 44455677777654 4567799999999999986555567999999999999999999999999
Q ss_pred HHHHHHhhhhchhhHHhHHHHHHHHHhc--cChHHHHHHH
Q psy10461 1207 SFLFEYIGEMGKDYIYAVTPLLEDALMD--RDLVHRQTAC 1244 (1359)
Q Consensus 1207 s~Iae~IG~~~kdYL~~VlPlLedaL~D--~D~~VRqtA~ 1244 (1359)
+.|.---.+.....+.+++-.|.....| +|..+|..+.
T Consensus 672 G~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~ 711 (963)
T 4ady_A 672 SMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGAC 711 (963)
T ss_dssp HHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 8875322122222444555555555655 4556665433
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.85 E-value=2.1e-08 Score=104.92 Aligned_cols=183 Identities=18% Similarity=0.149 Sum_probs=137.8
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc---
Q psy10461 1069 KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--- 1145 (1359)
Q Consensus 1069 ~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--- 1145 (1359)
....|.+..++++.++.||..++..|..++....+.....--...+..++.+|++....||..|+.+|+.|+..-..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 35778889999999999999999999999863322111100012455667889988899999999999999842111
Q ss_pred ----hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcC-------ccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhh
Q psy10461 1146 ----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1146 ----edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-------P~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG 1214 (1359)
...++.|+..|+..+..+|..++.+++.++.... ...++|.|++.+++++.+||..++++|..++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1357788888988888899999999999885321 12689999999999999999999999998876422
Q ss_pred hhchhhH-HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1215 EMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1215 ~~~kdYL-~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
......+ ..++|.|.+++.+.+..+|..|+.++..|+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2111122 357888999999999999999999998875
No 65
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.78 E-value=4.2e-06 Score=109.38 Aligned_cols=369 Identities=11% Similarity=0.080 Sum_probs=216.0
Q ss_pred hHHHHHh-hhcCCCCHHHHHHHHHHHHHHHH-hc-Ccc-chhhhHHHHHHHHHH---------------HhhccCchhH-
Q psy10461 903 EIINRVV-DDLKDENEQYRKMVMESIEKTMS-NL-GAA-DIDSRLEEQLIDGIL---------------YAFQEQTTED- 962 (1359)
Q Consensus 903 eiI~~Ll-~~LKDes~~VR~~Aa~~L~~Ia~-~L-Gpe-~l~~~L~~~Lld~LL---------------plLqd~~~eD- 962 (1359)
.+++.++ ..|. ++.+|..|+++|..|+. .. ++. ..++ ....++..++ +.+.+...+|
T Consensus 235 ~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~-~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~ 311 (1023)
T 4hat_C 235 NILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKR-QTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQ 311 (1023)
T ss_dssp SHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHH-HHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHH
T ss_pred hHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHH-HHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchH
Confidence 3566666 5553 57799999999999987 33 331 1221 1122222222 2233322233
Q ss_pred ---HHHHHHHHHHHhhcccccc--cchHhHHH----HHHHhhcCCCHHHHHHHHHHHHHHHHHhhh---hh--HHhHHHH
Q psy10461 963 ---VVMLNGFGTIVNQLGKRVK--PYLPQICG----TILWRLNNKSAKVRQQAADLISRIAVVMKT---CQ--EEKLMGH 1028 (1359)
Q Consensus 963 ---~v~lkaLg~Lae~Lg~~ik--Pyl~qILp----iIl~LL~Des~~VR~aAAe~Is~LA~vl~~---~~--e~~lL~~ 1028 (1359)
..+++.|..+.+.....+. |+..+++. .++.....++..|=.-+.+.|..++..+-. +. -...+.+
T Consensus 312 e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~ 391 (1023)
T 4hat_C 312 SFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ 391 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 3345555555555555442 44445543 677777788888888899999999885531 11 1467778
Q ss_pred HHHHHHHHhc--c-------c----------ChHHH---HHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc--CCCH
Q psy10461 1029 LGVVLYEYLG--E-------E----------YPEVL---GSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK--NRHE 1084 (1359)
Q Consensus 1029 Ll~iLle~L~--D-------e----------~pEVl---~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk--Dr~~ 1084 (1359)
|..+|+..+. + + .+|.. +..-..|..++...+.+ -++.+++.+...+. +.+|
T Consensus 392 L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~----~~~~~~~~l~~~l~~~~~~W 467 (1023)
T 4hat_C 392 LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID----TEEIMISKLARQIDGSEWSW 467 (1023)
T ss_dssp HHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHSSTTCCH
T ss_pred HHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHHHHhcCCCCCH
Confidence 8888887762 1 1 11211 11224444444443311 12223343333333 3689
Q ss_pred HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcc
Q psy10461 1085 KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-----AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ 1159 (1359)
Q Consensus 1085 rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk-----D~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~q 1159 (1359)
..|++++.++|.|++...+.....-+..+...|+.++. |.+..||..++-++|.+++.+... +..|
T Consensus 468 ~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---~~~L------ 538 (1023)
T 4hat_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFL------ 538 (1023)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC---HHHH------
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc---HHHH------
Confidence 99999999999999854432111214445555666664 466667888888888877754210 0001
Q ss_pred cchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhc--------hhhHHhHHHHHHHH
Q psy10461 1160 ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG--------KDYIYAVTPLLEDA 1231 (1359)
Q Consensus 1160 e~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~--------kdYL~~VlPlLeda 1231 (1359)
..+|..|+..+.++.+.|+.++|+++..+++.|+... ..|+..++..+..+
T Consensus 539 ---------------------~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~ 597 (1023)
T 4hat_C 539 ---------------------RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1023)
T ss_dssp ---------------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred ---------------------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHH
Confidence 1356778888888888999999999999999998644 34888888877777
Q ss_pred HhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccccc----------C------C---hHHHHHHHHHHHHH
Q psy10461 1232 LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE----------T------S---PHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1232 L~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~E----------t------s---p~Vi~~ileaLeaL 1292 (1359)
..+-+..-+..+..+|.++. ...+.+.....++..+++.+.+ . + ...+.++++++.++
T Consensus 598 ~~~l~~~~~~~lyeai~~vi---~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v 674 (1023)
T 4hat_C 598 TADLQPQQVHTFYKACGIII---SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAV 674 (1023)
T ss_dssp HTTSCHHHHHHHHHHHHHHH---TTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHH---HhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHH
Confidence 76444444444455555554 4455444344444444432221 0 1 12334688888999
Q ss_pred HHhhchHH--HHHhHhhhhcc
Q psy10461 1293 RVALGPVR--ILQYVLQGLFH 1311 (1359)
Q Consensus 1293 r~aLG~~~--ll~~vLpgLfh 1311 (1359)
+.++|..+ .+..+++-+++
T Consensus 675 ~~~lg~~f~~~~~~i~~~~l~ 695 (1023)
T 4hat_C 675 CTSMGADFYPQLGHIYYNMLQ 695 (1023)
T ss_dssp HHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHH
Confidence 99999855 34455555543
No 66
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.75 E-value=4.9e-07 Score=108.45 Aligned_cols=317 Identities=11% Similarity=0.077 Sum_probs=190.3
Q ss_pred HhHHHHHhhhcCC------------CCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHH
Q psy10461 902 SEIINRVVDDLKD------------ENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGF 969 (1359)
Q Consensus 902 ~eiI~~Ll~~LKD------------es~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaL 969 (1359)
.-.++.|+..|++ +++.+|..|+.+|+.|+..-+.. ... .....++++|...
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~-~~~----~~~~~~~~~l~~~----------- 132 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDD-KRG----RREIRVLHLLEQI----------- 132 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSC-HHH----HHHHHHHHHHHHH-----------
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcch-hHH----HHHHHHHHHHHHh-----------
Confidence 4457888888885 34799999999999999855433 111 1122233332210
Q ss_pred HHHHhhcccccccchHhHHHHHHHhh-cC---CCHHHHH-------HHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHh
Q psy10461 970 GTIVNQLGKRVKPYLPQICGTILWRL-NN---KSAKVRQ-------QAADLISRIAVVMKTCQEEKLM-GHLGVVLYEYL 1037 (1359)
Q Consensus 970 g~Lae~Lg~~ikPyl~qILpiIl~LL-~D---es~~VR~-------aAAe~Is~LA~vl~~~~e~~lL-~~Ll~iLle~L 1037 (1359)
+.|...++..+.... .+ +++ ||. +|+++|++|+.. ..+.. .++ ...+++|...|
T Consensus 133 -----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~nls~~-~e~R~-~i~~~G~l~~Lv~LL 198 (458)
T 3nmz_A 133 -----------RAYCETCWEWQEAHEPGMDQDKNP-MPAPVEHQICPAVCVLMKLSFD-EEHRH-AMNELGGLQAIAELL 198 (458)
T ss_dssp -----------HHHHHHHHHHHTTTSSSSCCCSCC---CCCTTTTHHHHHHHHHHTTS-HHHHH-HHHHTTHHHHHHHHH
T ss_pred -----------hhhhHHHHHHHHhhccccccccCC-ccchhhHHHHHHHHHHHHhcCC-HHHHH-HHHHCCCHHHHHHHH
Confidence 011111122222211 11 111 555 777777777643 11111 110 12233344443
Q ss_pred c-----------ccChHHHHHHHHHHHHHHHHhCCCCCCCc---hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCC
Q psy10461 1038 G-----------EEYPEVLGSILGALKAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPE 1103 (1359)
Q Consensus 1038 ~-----------De~pEVl~siL~AL~aIa~vlG~~~lsp~---l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e 1103 (1359)
. ...+++...+.++|..++..- ...... ....+|.|+.+|+..+..|++.++.+|..|+....
T Consensus 199 ~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~- 275 (458)
T 3nmz_A 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD- 275 (458)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-
T ss_pred hhhhcccccccCCCCHHHHHHHHHHHHHHhCCC--cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-
Confidence 1 123455666777777776321 100001 12468999999999999999999999999975311
Q ss_pred chhhHH-HH--HHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhC--------chhHHHHHHHhhhcccc----hhHHHH
Q psy10461 1104 YVSARE-WM--RICFELLELL-KAHKKAIRRATVNTFGYIAKAIG--------PHDVLATLLNNLKVQER----QNRVCT 1167 (1359)
Q Consensus 1104 ~v~~kE-~m--rIc~eLLelL-kD~~~sVR~AAv~tLg~IAk~~G--------pedVlp~LL~~Lk~qe~----~VRv~t 1167 (1359)
...+. +. ..+..|+.+| ......+++.|+.+|..|+.... ....++.|+..|+.... .++..+
T Consensus 276 -~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A 354 (458)
T 3nmz_A 276 -VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG 354 (458)
T ss_dssp -HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHH
Confidence 11111 11 1344566764 44567899999999999987321 12356677777775432 266666
Q ss_pred HHHHHHHhhh--cCc--------cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhcc
Q psy10461 1168 TVAIAIVAET--CSP--------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDR 1235 (1359)
Q Consensus 1168 a~AIg~LAea--~gP--------~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~ 1235 (1359)
+-++..|+.. ..+ ...+|.|+.+|++++..||..++++|..++.. ......++ .-++|.|.+++...
T Consensus 355 ~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 355 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSK 433 (458)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred HHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCC
Confidence 7777777752 122 26899999999999999999999999888631 12223333 45788899999888
Q ss_pred ChHHHHHHHHHHHHHHhh
Q psy10461 1236 DLVHRQTACATIKHMALG 1253 (1359)
Q Consensus 1236 D~~VRqtA~saIk~LAl~ 1253 (1359)
+..+|..|+.+|..|+.+
T Consensus 434 ~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 434 HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 999999999999998743
No 67
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=6.1e-10 Score=91.79 Aligned_cols=44 Identities=75% Similarity=1.305 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhhccCCCCChHHHHhhcCCCceecCCCccccc
Q psy10461 786 PEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAACFF 829 (1359)
Q Consensus 786 pe~~~~~~~e~~i~~rnf~~~DEEm~ki~p~glkVV~~p~~~~~ 829 (1359)
|+|+++++|+++|++||+++||||++.|+|+||+||.+|++|.+
T Consensus 3 p~~~~~~~~~~ei~~rnrpltDEeLD~~LP~GY~il~pP~~Y~p 46 (47)
T 2fho_A 3 PEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP 46 (47)
T ss_dssp CCCCCCCCCCCCCCCCCCCSCTTHHHHHSCTTEEECCCCTTCCC
T ss_pred HHHhhhhhhhhccccccCCCCHHHHHHhCCCCCeecCCCCCCCC
Confidence 45557789999999999999999999999999999999999865
No 68
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.70 E-value=9.9e-06 Score=105.72 Aligned_cols=309 Identities=11% Similarity=0.130 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHHHHHh-cCccc--hhh---hHHHHHHHHHH-----------HhhccCchhH----HHHHHHHHHHHh
Q psy10461 916 NEQYRKMVMESIEKTMSN-LGAAD--IDS---RLEEQLIDGIL-----------YAFQEQTTED----VVMLNGFGTIVN 974 (1359)
Q Consensus 916 s~~VR~~Aa~~L~~Ia~~-LGpe~--l~~---~L~~~Lld~LL-----------plLqd~~~eD----~v~lkaLg~Lae 974 (1359)
++.+|..|+++|..++.. +++.. ... .+...+++.+. ..+.+...+| ..+++.|..+++
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~ 326 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 789999999999999875 22220 111 11112222211 1121222222 234444444443
Q ss_pred hccc------ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh---hhh--HHhHHHHHHHHHHHHhc--c--
Q psy10461 975 QLGK------RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK---TCQ--EEKLMGHLGVVLYEYLG--E-- 1039 (1359)
Q Consensus 975 ~Lg~------~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~---~~~--e~~lL~~Ll~iLle~L~--D-- 1039 (1359)
.... ..++++..+++.++....+++..|+..+.+.|..++..+. .+. ...++..++.+++..+. +
T Consensus 327 ~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~ 406 (1049)
T 3m1i_C 327 RNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEV 406 (1049)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcce
Confidence 3222 2457788899999988888899999999999999998541 111 14677888888887761 0
Q ss_pred -c--------------ChH---HHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc--CCCHHHHHHHHHHHHHHHh
Q psy10461 1040 -E--------------YPE---VLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1040 -e--------------~pE---Vl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk--Dr~~rVR~AAielIg~IA~ 1099 (1359)
| ..| ....+...|..++...+.. .+.-+++.+...+. +.+|+.+++++.++|.|+.
T Consensus 407 ~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~----~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~ 482 (1049)
T 3m1i_C 407 LVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID----TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG 482 (1049)
T ss_dssp CEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTT
T ss_pred eeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 0 011 1223445666666443211 12223333333343 4789999999999999987
Q ss_pred hCCCchhhHH-HHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHhhhcccchhHHHHH
Q psy10461 1100 RGPEYVSARE-WMRICFELLELL-----KAHKKAIRRATVNTFGYIAKAIGPH-----DVLATLLNNLKVQERQNRVCTT 1168 (1359)
Q Consensus 1100 ~g~e~v~~kE-~mrIc~eLLelL-----kD~~~sVR~AAv~tLg~IAk~~Gpe-----dVlp~LL~~Lk~qe~~VRv~ta 1168 (1359)
.+.+.. ... +..+...++.+. +|++..||..++.++|.+++.+..+ .+++.|++.+...+..||..++
T Consensus 483 ~~~~~~-e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~ 561 (1049)
T 3m1i_C 483 TMSEDT-EKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMAC 561 (1049)
T ss_dssp SSCHHH-HHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred ccCchh-hHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 543221 111 233333333332 2456667767899999988876542 3444556666666677999999
Q ss_pred HHHHHHhhhcC------------cc--ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh--hchhhHHhHHHHHH
Q psy10461 1169 VAIAIVAETCS------------PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAVTPLLE 1229 (1359)
Q Consensus 1169 ~AIg~LAea~g------------P~--~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~--~~kdYL~~VlPlLe 1229 (1359)
.||..+++.|+ |+ .++..+...+...+..-+..+..+++.++...+. ....|+..+++.+.
T Consensus 562 ~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~ 638 (1049)
T 3m1i_C 562 DTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN 638 (1049)
T ss_dssp HHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999886 33 3444444445554555567888999999888773 35567777666543
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.70 E-value=7e-07 Score=115.14 Aligned_cols=286 Identities=18% Similarity=0.233 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHhhcc-cccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-HHhHHHHHHHHHHHHhccc
Q psy10461 963 VVMLNGFGTIVNQLG-KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ-EEKLMGHLGVVLYEYLGEE 1040 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg-~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~-e~~lL~~Ll~iLle~L~De 1040 (1359)
......+..++..-+ ...-+ ..++..+...+.|+..- ..|+..+..||...+.+. .+.++-.+++.+++.++|.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 32 HEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp HHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 444444555555322 22223 47999999999997655 888899999986664311 1455656899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHH
Q psy10461 1041 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE 1119 (1359)
Q Consensus 1041 ~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr-~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLe 1119 (1359)
...|+.++-.+.++++..+... ...-+||.|+..+++. .|..+.++..+|+.++..+++.+... +..++..+.+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~ 182 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPV----AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR-MPELIPVLSE 182 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGG----GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh-ccchhcchHh
Confidence 9999999989999999987543 3567899999877644 79999999999999998664333222 3334444445
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhH
Q psy10461 1120 LLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQ 1199 (1359)
Q Consensus 1120 lLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR 1199 (1359)
...|.+..|..+|.+++-.++..++..+|.+ .+|.|++.+.+|+. |.
T Consensus 183 ~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~--------------------------------~~~~~~~~~~~p~~-~~ 229 (986)
T 2iw3_A 183 TMWDTKKEVKAAATAAMTKATETVDNKDIER--------------------------------FIPSLIQCIADPTE-VP 229 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG--------------------------------GHHHHHHHHHCTTH-HH
T ss_pred hcccCcHHHHHHHHHHHHHHHhcCCCcchhh--------------------------------hHHHHHHHhcChhh-hH
Confidence 5667789999999999988888776644322 35667777777643 32
Q ss_pred HHHHHHH---HHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccccc
Q psy10461 1200 NGVLKAL---SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE 1276 (1359)
Q Consensus 1200 ~~VlkaL---s~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~E 1276 (1359)
. +++.| .|++++ -..-+.-++|+|.+.|.++....++.++-++..|+..+.. ...+..+|+.++|.+..
T Consensus 230 ~-~~~~l~~~tfv~~v----~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~---~~~~~~f~~~l~p~~~~ 301 (986)
T 2iw3_A 230 E-TVHLLGATTFVAEV----TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED---PQVIAPFLGKLLPGLKS 301 (986)
T ss_dssp H-HHHHHTTCCCCSCC----CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC---HHHHHHHHTTTHHHHHH
T ss_pred H-HHHHhhcCeeEeee----cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC---HHHHhhhhhhhhhHHHH
Confidence 2 22222 122221 1224457899999999998877666667788888744432 23455788889987663
Q ss_pred -----CChHHHHHHHHHHHHHHHhhch
Q psy10461 1277 -----TSPHLVQAFMDAVEGLRVALGP 1298 (1359)
Q Consensus 1277 -----tsp~Vi~~ileaLeaLr~aLG~ 1298 (1359)
.+|++|.-+-.|++.|..+.|.
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 7899998888888888776553
No 70
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.66 E-value=6.1e-06 Score=107.40 Aligned_cols=395 Identities=10% Similarity=0.057 Sum_probs=231.8
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHH--HHHhhccCc--hhHHHHHHHHHHHHhhcc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDG--ILYAFQEQT--TEDVVMLNGFGTIVNQLG 977 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~--LLplLqd~~--~eD~v~lkaLg~Lae~Lg 977 (1359)
..+++.++..|.+ +.+|..|+++|..|+..-... ... ..++.. +-+.+.... .+|.-.++.++.++..+|
T Consensus 232 ~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~--~~k--~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~g 305 (980)
T 3ibv_A 232 EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKP--LEK--LNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQG 305 (980)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCH--HHH--HHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCCh--hhH--HHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 4567788888876 799999999999998753321 111 012221 122222211 122112222232222222
Q ss_pred cc------------------cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh------H--HhHHHHHHH
Q psy10461 978 KR------------------VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ------E--EKLMGHLGV 1031 (1359)
Q Consensus 978 ~~------------------ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~------e--~~lL~~Ll~ 1031 (1359)
.. ..+++..+++.++..+.+++..|-..+.++|..+...++... . ..++..++.
T Consensus 306 e~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~ 385 (980)
T 3ibv_A 306 VELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLE 385 (980)
T ss_dssp HHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 11 126788999999999999999999999999998887665211 1 367778888
Q ss_pred HHHHHhc-----cc-----------ChHHHHHHHHHHHHHHHHhCCCCCCCchhchHH----HHHH----Hh---cCCCH
Q psy10461 1032 VLYEYLG-----EE-----------YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLP----RLTP----IL---KNRHE 1084 (1359)
Q Consensus 1032 iLle~L~-----De-----------~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP----~L~~----LL---kDr~~ 1084 (1359)
.++..+. ++ |.+ .+..++.+..++.++|.+ .++. .+.+ .+ .+.+|
T Consensus 386 ~li~k~~yp~d~~~~~~~d~ed~~~F~e-~Rk~l~~l~d~~~~l~~~-------~~l~~~~~~i~~~l~~~l~~~~~~~W 457 (980)
T 3ibv_A 386 AIIKKMKYDESQEWDDDPDSEEEAEFQE-MRKKLKIFQDTINSIDSS-------LFSSYMYSAITSSLSTAATLSPENSW 457 (980)
T ss_dssp HHHHTTSCCTTCCCCCCSSSSTHHHHHH-HHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHccCCCccccccccchhHHHHHHH-HHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 8887762 11 123 334445777777777643 3344 3333 23 24569
Q ss_pred HHHHHHHHHHHHHHhhCCCchh---h--HHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhCch-hHHHHHH
Q psy10461 1085 KVQENCIDLVGRIADRGPEYVS---A--REWMRICFELLELLK-----AHKKAIRRATVNTFGYIAKAIGPH-DVLATLL 1153 (1359)
Q Consensus 1085 rVR~AAielIg~IA~~g~e~v~---~--kE~mrIc~eLLelLk-----D~~~sVR~AAv~tLg~IAk~~Gpe-dVlp~LL 1153 (1359)
+.+++++-+++.+++.+..... . ....++..-+..++. +.+..||..++.++|..++.+..+ +.++.+|
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 9999999999999996543110 0 001123322334554 678999999999999999988642 3444444
Q ss_pred Hh------hhcccchhHHHHHHHHHHHhhhcCcc--ccHHHHHHhc----CC-CC--------------------chhHH
Q psy10461 1154 NN------LKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEY----RV-PE--------------------LNVQN 1200 (1359)
Q Consensus 1154 ~~------Lk~qe~~VRv~ta~AIg~LAea~gP~--~VLPaLLnlL----kD-pE--------------------~nVR~ 1200 (1359)
+. +.+.+..||..++.+|..+++.|.+. ..++.+++.+ .- .+ .+-|.
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 617 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQL 617 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHH
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHH
Confidence 44 33445568989999999999999643 2234444444 31 11 12467
Q ss_pred HHHHHHHHHHHHhhh---hchhhHHhHHH-HHHH---HHhcc----ChHHH-HHHHHHHHHHHhhhcCC-----CchhHH
Q psy10461 1201 GVLKALSFLFEYIGE---MGKDYIYAVTP-LLED---ALMDR----DLVHR-QTACATIKHMALGVYGF-----GCEDAL 1263 (1359)
Q Consensus 1201 ~VlkaLs~Iae~IG~---~~kdYL~~VlP-lLed---aL~D~----D~~VR-qtA~saIk~LAl~~~gl-----G~Edal 1263 (1359)
.+..+++.+....+. ....|+..+++ ++.+ ++... +...+ .....++..++.++... .+...+
T Consensus 618 ~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f 697 (980)
T 3ibv_A 618 YLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASF 697 (980)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHH
Confidence 788888888877652 33456765554 3333 33221 21111 01234445566544322 123344
Q ss_pred hhhHHhhhcccc--cCChHHHHHHHHHHHHHHHhhchHH--HHHhHhhhhc
Q psy10461 1264 THLLNYVWPNIF--ETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF 1310 (1359)
Q Consensus 1264 iHlLnlvlPnI~--Etsp~Vi~~ileaLeaLr~aLG~~~--ll~~vLpgLf 1310 (1359)
...++.++.-+. ..+..|+.++..++..+-.++|.++ +++.++..+.
T Consensus 698 ~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 698 NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 454444433222 3677899999999999999999864 3444444333
No 71
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.61 E-value=2.1e-07 Score=97.30 Aligned_cols=196 Identities=19% Similarity=0.127 Sum_probs=130.2
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCC--C
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM--T 1062 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~--~ 1062 (1359)
....+.+..+++++++.||..|+.+|++++..-......-.-...++.|.+.|.+.+++++..++.+|..++..-.. .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34456778899999999999999999999843221111111124678888999888899998888888887531100 0
Q ss_pred CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10461 1063 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1063 ~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~ 1142 (1359)
.+ .....+|.++.++++.++.||..++.+|+.|+....+.....--......|+.+|++....+|..|+.+|+.|+..
T Consensus 91 ~i--~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 91 AV--IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HH--HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HH--HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 00 0124789999999999999999999999999863322111100011344556777777778888888888888753
Q ss_pred hCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1143 IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1143 ~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
+++ ....++ ...+++.|+++++++...||..++.+|..++
T Consensus 169 -~~~-~~~~~~--------------------------~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNE-QKQAVK--------------------------EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHH-HHHHHH--------------------------HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcH-HHHHHH--------------------------HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 110000 1146788888888888888888888887664
No 72
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.59 E-value=8.1e-06 Score=97.17 Aligned_cols=296 Identities=10% Similarity=0.057 Sum_probs=179.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy10461 988 CGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPP 1067 (1359)
Q Consensus 988 LpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~ 1067 (1359)
++.+..+|+..++.++..|+..|.+++..-..+...-.-...++.|.+.|...++++...++++|..++..- .+ ....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~-~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TT-NKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HH-HHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HH-HHHH
Confidence 456677788889999999999999997421111111122346788899998888888888888888886420 00 0000
Q ss_pred --hhchHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH--------hh--------HHHH
Q psy10461 1068 --IKDLLPRLTPILK-NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK--------AH--------KKAI 1128 (1359)
Q Consensus 1068 --l~~lLP~L~~LLk-Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk--------D~--------~~sV 1128 (1359)
-...+|.++.+|+ +.+..+++.++.+|..|+.. .+.-... .......|+.+|. +. ...|
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i-~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEEL-IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHH-HHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHH-HhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 1136899999998 88899999999999999974 3221111 1123445566672 22 2356
Q ss_pred HHHHHHHHHHHHHHhCch---------hHHHHHHHhhhc------ccchhHHHHHHHHHHHh------------------
Q psy10461 1129 RRATVNTFGYIAKAIGPH---------DVLATLLNNLKV------QERQNRVCTTVAIAIVA------------------ 1175 (1359)
Q Consensus 1129 R~AAv~tLg~IAk~~Gpe---------dVlp~LL~~Lk~------qe~~VRv~ta~AIg~LA------------------ 1175 (1359)
.+.|+.+|..|+.. ++ .+++.|+..++. .+..+...+..++..++
T Consensus 160 ~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 160 FFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 66999999988864 21 456667666653 11122211111122211
Q ss_pred -----------------h--------------hc---C-----ccccHHHHHHhcCCC-CchhHHHHHHHHHHHHHHhhh
Q psy10461 1176 -----------------E--------------TC---S-----PFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGE 1215 (1359)
Q Consensus 1176 -----------------e--------------a~---g-----P~~VLPaLLnlLkDp-E~nVR~~VlkaLs~Iae~IG~ 1215 (1359)
. .. | -..+++.|+.+|+.. .+.++..++++|+.++..-+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 0 00 0 014688889998754 478999999999887631111
Q ss_pred hc----hhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHh-hhHHhhhcccccCC------hHHH
Q psy10461 1216 MG----KDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT-HLLNYVWPNIFETS------PHLV 1282 (1359)
Q Consensus 1216 ~~----kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Edali-HlLnlvlPnI~Ets------p~Vi 1282 (1359)
.. +..+ ..++|.|.+++.+.+..++..|+.+|..|+..-. ....+. +.++.+...+...+ ++++
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~---~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL---LHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG---GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH---HHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 10 1122 3567999999999999999999999999985322 122221 33344444443332 3566
Q ss_pred HHHHHHHHHH
Q psy10461 1283 QAFMDAVEGL 1292 (1359)
Q Consensus 1283 ~~ileaLeaL 1292 (1359)
..++.++..+
T Consensus 395 ~~~l~~l~ni 404 (457)
T 1xm9_A 395 SSACYTVRNL 404 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.58 E-value=3.7e-06 Score=88.71 Aligned_cols=210 Identities=20% Similarity=0.326 Sum_probs=157.7
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhCch
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK-KAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~-~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
-++++-.++..|.|.-|-||.+++..+..++..-++.. ..+...|+-||+.+. =-.-.+...+||.+++. .|+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~-----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY-----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHH
Confidence 45788888889999999999999999999988544322 234455666665432 22335677899999987 676
Q ss_pred ---hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhh
Q psy10461 1147 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDY 1220 (1359)
Q Consensus 1147 ---dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdY 1220 (1359)
.+.|.|..|++.-+.+.|+..+.+++.|+.+. |. .|.--++.+|.+|+..=|..++. | .+.+|.+.-.|
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl~aLn---F-i~alGen~~~y 178 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKLTALN---F-IEAMGENSFKY 178 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHHHHHH---H-HHTCCTTTHHH
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHHHHHH---H-HHHHhccCccc
Confidence 45778888888888889999999999998765 32 57777888889888666655544 3 34467777789
Q ss_pred HHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHH
Q psy10461 1221 IYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 1294 (1359)
Q Consensus 1221 L~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~ 1294 (1359)
+...+|-|..+|.|.|..||..|..++.|+|..- ..+-..+...+.-+.++|..|...+-+++..+..
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n------pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLN------DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9899999999999999999999999999998432 2233444445566677898898888888877654
No 74
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.57 E-value=1.4e-05 Score=104.02 Aligned_cols=417 Identities=10% Similarity=0.042 Sum_probs=246.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccccch---H--hH
Q psy10461 914 DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKPYL---P--QI 987 (1359)
Q Consensus 914 Des~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikPyl---~--qI 987 (1359)
..+..++..++++|...+..++...+.. ..+++.+..++.+ .+. ..++++|..++..... ...++ . .+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~---~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~-~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVN---EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMK-PLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHC---HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhc---chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHhH
Confidence 4677899999999999988766653333 2677776666654 222 6777778777776432 11111 1 11
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhhhhhH--------------HhHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy10461 988 CGTILWRLN-NKSAKVRQQAADLISRIAVVMKTCQE--------------EKLMGHLGVVLYEYLGEEYPEVLGSILGAL 1052 (1359)
Q Consensus 988 LpiIl~LL~-Des~~VR~aAAe~Is~LA~vl~~~~e--------------~~lL~~Ll~iLle~L~De~pEVl~siL~AL 1052 (1359)
.+.+..+.. +++..++...|.+++.++..+-.+ . ...+..+++.++..++..+.|+...++.-+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 222222222 578888888898888887655433 1 156677888888999888888877665655
Q ss_pred HHHHHHh---CC-CCCCCchhchHHHHHHHh----c---CCCH-------------HHHHHHHHHHHHHHhhCCCchhhH
Q psy10461 1053 KAIVNVI---GM-TKMTPPIKDLLPRLTPIL----K---NRHE-------------KVQENCIDLVGRIADRGPEYVSAR 1108 (1359)
Q Consensus 1053 ~aIa~vl---G~-~~lsp~l~~lLP~L~~LL----k---Dr~~-------------rVR~AAielIg~IA~~g~e~v~~k 1108 (1359)
..+...+ .. ..+.+..++++++++..+ + |..| ..|..+..++..++..+++.+-.+
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5554432 11 123344567777777732 1 1111 245555544545554444322211
Q ss_pred HHHHHHHHHHHH----H---HhhHHHHHHHHHHHHHHHHHHhCch------------hHHHHHHHhhh-----cccchhH
Q psy10461 1109 EWMRICFELLEL----L---KAHKKAIRRATVNTFGYIAKAIGPH------------DVLATLLNNLK-----VQERQNR 1164 (1359)
Q Consensus 1109 E~mrIc~eLLel----L---kD~~~sVR~AAv~tLg~IAk~~Gpe------------dVlp~LL~~Lk-----~qe~~VR 1164 (1359)
++..+.++ + .+..|..+++++-.|+.+++.+... .+++.|...++ .....||
T Consensus 437 ----~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~ 512 (980)
T 3ibv_A 437 ----MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ 512 (980)
T ss_dssp ----HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred ----HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 22222333 3 2357899999999999999987531 24443444333 3345689
Q ss_pred HHHHHHHHHHhhhcC--cc---ccHHHHHH--hcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhcc--
Q psy10461 1165 VCTTVAIAIVAETCS--PF---TVLPALMN--EYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR-- 1235 (1359)
Q Consensus 1165 v~ta~AIg~LAea~g--P~---~VLPaLLn--lLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~-- 1235 (1359)
.+++..+|..++-+. |. .+|+.|+. .+.++...||.+++.++..+++.+.....+|+..++..+.+++.-.
T Consensus 513 ~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~ 592 (980)
T 3ibv_A 513 LLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVS 592 (980)
T ss_dssp HHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCC
Confidence 999999998887774 32 45666666 6667888999999999999999999877788888888877766511
Q ss_pred ---Ch----------------HHHHHHHHHHHHHHhhhcCCCc-hhHHhhhHHhhhccccc--------C-C--hH--HH
Q psy10461 1236 ---DL----------------VHRQTACATIKHMALGVYGFGC-EDALTHLLNYVWPNIFE--------T-S--PH--LV 1282 (1359)
Q Consensus 1236 ---D~----------------~VRqtA~saIk~LAl~~~glG~-EdaliHlLnlvlPnI~E--------t-s--p~--Vi 1282 (1359)
+. +-+-....++..|. ...+. .+....++..+++.++. . + .+ .+
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li---~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i 669 (980)
T 3ibv_A 593 PVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI---SSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV 669 (980)
T ss_dssp CCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHH
T ss_pred CCCcccccccchhhhcccCCchHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHH
Confidence 10 11222233344432 22221 12223344444433222 1 1 11 22
Q ss_pred HHHHHHHHHHHHhhc--------hHHHHHhHhhhh----c--cccccchhhHHHHHHhhhhccccchhhccccccc
Q psy10461 1283 QAFMDAVEGLRVALG--------PVRILQYVLQGL----F--HPARKVRDVYWKIYNSLYIGGQDALISAYPRIQN 1344 (1359)
Q Consensus 1283 ~~ileaLeaLr~aLG--------~~~ll~~vLpgL----f--hpA~kvrd~~WRvyn~~y~~~~~Alv~~~P~l~~ 1344 (1359)
..++.++..++...- ...++..+++.+ - .--..+|+...+.+-.+..--...+.|++|.+-.
T Consensus 670 ~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHH
Confidence 346667777776442 122344444444 1 2234588888888877777777789999997754
No 75
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.56 E-value=1.5e-05 Score=104.26 Aligned_cols=320 Identities=12% Similarity=0.134 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccC---chhH----HHHHHHHHHHHhhcccc-cccchHhHHH
Q psy10461 918 QYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ---TTED----VVMLNGFGTIVNQLGKR-VKPYLPQICG 989 (1359)
Q Consensus 918 ~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~---~~eD----~v~lkaLg~Lae~Lg~~-ikPyl~qILp 989 (1359)
.+|.+- ++|..+..-+|+ .++..+++.++++ +..+ ++++-+||.+++++... ..++++++++
T Consensus 429 ~f~~~R-d~L~~l~~l~~~---------~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~ 498 (1023)
T 4hat_C 429 LYKSER-EVLVYLTHLNVI---------DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1023)
T ss_dssp HHHHHH-HHHHHHHHHCHH---------HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHhccCHH---------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 444443 556555553333 3555555555421 1112 68889999999988764 6799999999
Q ss_pred HHHHhhc-----CCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC--
Q psy10461 990 TILWRLN-----NKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT-- 1062 (1359)
Q Consensus 990 iIl~LL~-----Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~-- 1062 (1359)
.|+.++. |..+.||..+++++|+.+..+.. ..++|..++..|++.|.+..+.|..+++++|..+++..+..
T Consensus 499 ~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~--~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~ 576 (1023)
T 4hat_C 499 DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV 576 (1023)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999987 57788999999999999999863 35678999999999998888999999999999998875421
Q ss_pred -----CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHH-HHHHHHH----HH----------HH
Q psy10461 1063 -----KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWM-RICFELL----EL----------LK 1122 (1359)
Q Consensus 1063 -----~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~m-rIc~eLL----el----------Lk 1122 (1359)
.++|++.+++..+..+..+-...-+..+.++++.++...+......+++ +++..+. .+ +.
T Consensus 577 ~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~ 656 (1023)
T 4hat_C 577 IQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLL 656 (1023)
T ss_dssp SCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGG
T ss_pred ccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhc
Confidence 1244555555555556666667778899999999998655322111111 1221111 11 11
Q ss_pred hhHHHHHH--HHHHHHHHHHHHhCch------hHHHHHHHhhhccc-----------------chhHHHHHH--HHHHHh
Q psy10461 1123 AHKKAIRR--ATVNTFGYIAKAIGPH------DVLATLLNNLKVQE-----------------RQNRVCTTV--AIAIVA 1175 (1359)
Q Consensus 1123 D~~~sVR~--AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~qe-----------------~~VRv~ta~--AIg~LA 1175 (1359)
|. +.+++ ...+++..++...|.. .+.+.+++..+.-. ..+|.+-.+ .+-.+.
T Consensus 657 d~-~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~ 735 (1023)
T 4hat_C 657 DS-ETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLV 735 (1023)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHH
Confidence 11 12222 2345666777777762 33444444332110 012322111 111111
Q ss_pred -----hhcCcc--------ccHHHHHHhcCCCCchhH-HHHHHHHHHHHHHhhhhchhhHHhHHHHHH----HHHhc---
Q psy10461 1176 -----ETCSPF--------TVLPALMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLE----DALMD--- 1234 (1359)
Q Consensus 1176 -----ea~gP~--------~VLPaLLnlLkDpE~nVR-~~VlkaLs~Iae~IG~~~kdYL~~VlPlLe----daL~D--- 1234 (1359)
...... .++..++..|+...+..| ..|+..++.+...+|....+++..|+..+. +++++
T Consensus 736 ~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~ 815 (1023)
T 4hat_C 736 ETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFT 815 (1023)
T ss_dssp HHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccc
Confidence 111111 244445666777777777 588888899999999876666655554332 33444
Q ss_pred cChHHHHHHHHHHHHH
Q psy10461 1235 RDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1235 ~D~~VRqtA~saIk~L 1250 (1359)
+.++||..--..++.+
T Consensus 816 ~~Pe~r~~ff~ll~~~ 831 (1023)
T 4hat_C 816 EYPEHRVEFYKLLKVI 831 (1023)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHH
Confidence 4688884434444444
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.54 E-value=9.8e-06 Score=103.84 Aligned_cols=271 Identities=15% Similarity=0.140 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhhcccccccchHhHHHHHHHhhcCCC--------HHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Q psy10461 963 VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKS--------AKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLY 1034 (1359)
Q Consensus 963 ~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~LL~Des--------~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLl 1034 (1359)
.-++.++|.+..+.+. .++..|...+.+.+ +.||..|+-.|+.+. ++.+. ++.+.. |.
T Consensus 413 ~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~--~GS~~-eev~e~----L~ 478 (963)
T 4ady_A 413 GGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA--MGSAN-IEVYEA----LK 478 (963)
T ss_dssp HHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS--TTCCC-HHHHHH----HH
T ss_pred HHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh--cCCCC-HHHHHH----HH
Confidence 4556667777655542 45666666666555 789999888877753 23222 233333 34
Q ss_pred HHhcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHH
Q psy10461 1035 EYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRI 1113 (1359)
Q Consensus 1035 e~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~L-LkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrI 1113 (1359)
..|.++...+...+.-+|+-+. +|.. ..+.+..|+.. ..+.+..||+.++..||.+.-...+ .
T Consensus 479 ~~L~dd~~~~~~~AalALGli~--vGTg-----n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~ 542 (963)
T 4ady_A 479 EVLYNDSATSGEAAALGMGLCM--LGTG-----KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------L 542 (963)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH--TTCC-----CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------G
T ss_pred HHHhcCCHHHHHHHHHHHhhhh--cccC-----CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------H
Confidence 4444444322223333444432 2322 33566666664 3577899999999999987542222 2
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhc-ccchhHHHHHHHHHHHhhhcCccccHHHHHHh-
Q psy10461 1114 CFELLELLK-AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV-QERQNRVCTTVAIAIVAETCSPFTVLPALMNE- 1190 (1359)
Q Consensus 1114 c~eLLelLk-D~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~-qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnl- 1190 (1359)
|..++..|. +.++.+|..++-++|.-..--|....+..||..+.. .+..+|..++.++|.|+- |..+.+|.++..
T Consensus 543 ~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--g~~e~v~rlv~~L 620 (963)
T 4ady_A 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--RDYTTVPRIVQLL 620 (963)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--SSCSSHHHHTTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--CCHHHHHHHHHHH
Confidence 344456665 467889999999888655555666777777777653 344689888888887752 333567777774
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhH----Hhhh
Q psy10461 1191 YRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA----LTHL 1266 (1359)
Q Consensus 1191 LkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Eda----liHl 1266 (1359)
+++.+++||.+++.+|+.++- |. .. ..++..|..++.|.|..||+.|+-++.-+ +.|.-++ +..+
T Consensus 621 ~~~~d~~VR~gAalALGli~a--Gn-~~---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I-----g~gtnna~~~rva~~ 689 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACA--GK-GL---QSAIDVLDPLTKDPVDFVRQAAMIALSMI-----LIQQTEKLNPQVADI 689 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTS--SS-CC---HHHHHHHHHHHTCSSHHHHHHHHHHHHHH-----STTCCTTTCTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhcc--CC-Cc---HHHHHHHHHHccCCCHHHHHHHHHHHHHH-----hcCCccccchHHHHH
Confidence 467889999999999988753 22 11 46778888899999999999876555544 3332222 4455
Q ss_pred HHhhhccccc
Q psy10461 1267 LNYVWPNIFE 1276 (1359)
Q Consensus 1267 LnlvlPnI~E 1276 (1359)
+..+...+.+
T Consensus 690 l~~L~~~~~d 699 (963)
T 4ady_A 690 NKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 5555555544
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.53 E-value=7.3e-06 Score=86.52 Aligned_cols=214 Identities=13% Similarity=0.190 Sum_probs=154.3
Q ss_pred HhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccc
Q psy10461 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKR 979 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ 979 (1359)
.+++..++..|-|+-|-||+.|+..+..++.+.+. +..++++.++-.+.-++.=+ ..+.++||.++..-++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e------l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED------LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG------GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH------HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 45788999999999999999999999999986643 34468888887776544422 55678899988877654
Q ss_pred cccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Q psy10461 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI 1059 (1359)
Q Consensus 980 ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl 1059 (1359)
+ ..++|+|..-..-.++.+|...+-.+..|+..- +.++..++.-+...|.+.+..-...+++-++ .+
T Consensus 105 v----~~vVp~lfanyrigd~kikIn~~yaLeeIaran-----P~l~~~v~rdi~smltskd~~Dkl~aLnFi~----al 171 (253)
T 2db0_A 105 V----KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-----PMLMASIVRDFMSMLSSKNREDKLTALNFIE----AM 171 (253)
T ss_dssp H----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHH----TC
T ss_pred H----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCChHHHHHHHHHHH----HH
Confidence 4 577888887777789999999888888887543 3455556666666665444333333433333 34
Q ss_pred CCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10461 1060 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 1139 (1359)
Q Consensus 1060 G~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~I 1139 (1359)
|..+ .-+..++||++..+|.|++..||.++++.++.+|...+. +-.++...+.-++|...-|.....+.|+.|
T Consensus 172 Gen~-~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk------lRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 172 GENS-FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK------LRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp CTTT-HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred hccC-ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4332 236778999999999999999999999999999985442 333555556677787777777777777766
Q ss_pred HH
Q psy10461 1140 AK 1141 (1359)
Q Consensus 1140 Ak 1141 (1359)
+-
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.43 E-value=1.8e-05 Score=97.58 Aligned_cols=337 Identities=14% Similarity=0.044 Sum_probs=196.0
Q ss_pred HHHHHHHhhccCchhH-HHHHHHHHHHHhhccc-ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh-hhhhHH
Q psy10461 947 LIDGILYAFQEQTTED-VVMLNGFGTIVNQLGK-RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM-KTCQEE 1023 (1359)
Q Consensus 947 Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~-~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl-~~~~e~ 1023 (1359)
.+..|+.+|++...+. ..++.++..++..-.. ...-.-...+|.|..+|...+..|+..|+.+|.+|+..- ..+...
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 4566677776654433 3344555555532211 111112346799999999999999999999999998521 111111
Q ss_pred hHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHhc------------------CCCH
Q psy10461 1024 KLMGHLGVVLYEYLGE-EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILK------------------NRHE 1084 (1359)
Q Consensus 1024 ~lL~~Ll~iLle~L~D-e~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLk------------------Dr~~ 1084 (1359)
-.-..-++.|...|.. ...++...+.++|-.++..-..+ ..-...-+|.|+.++. ....
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k--~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK--MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH--HHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 1112357778888865 45677777777777775421000 0012234677777541 1236
Q ss_pred HHHHHHHHHHHHHHhhCCCchhhHHHHH----HHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHh-----------
Q psy10461 1085 KVQENCIDLVGRIADRGPEYVSAREWMR----ICFELLELLKA------HKKAIRRATVNTFGYIAKAI----------- 1143 (1359)
Q Consensus 1085 rVR~AAielIg~IA~~g~e~v~~kE~mr----Ic~eLLelLkD------~~~sVR~AAv~tLg~IAk~~----------- 1143 (1359)
.|+++++.+|..++....+ .+..+. +...|+.+|++ ....+.+.|+-+|-.|+-..
T Consensus 207 ~V~~nAa~~L~NLs~~~~~---~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSE---ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHH---HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred HHHHHHHHHHHHHhcCCHH---HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 8999999999999863321 111222 22344555553 23345566666665555321
Q ss_pred ----------------Cch-----hHHHHHHHhhhc-ccchhHHHHHHHHHHHhhhc-----------CccccHHHHHHh
Q psy10461 1144 ----------------GPH-----DVLATLLNNLKV-QERQNRVCTTVAIAIVAETC-----------SPFTVLPALMNE 1190 (1359)
Q Consensus 1144 ----------------Gpe-----dVlp~LL~~Lk~-qe~~VRv~ta~AIg~LAea~-----------gP~~VLPaLLnl 1190 (1359)
|.+ .+++.|+..|+. .+..++..++-|+..++..- .....+|.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 001 234566777753 34567888888888775321 223679999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhhhhchhhH-HhHHHHHHHHHhccC--------hHHHHHHHHHHHHHHhhhcCCCchh
Q psy10461 1191 YRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRD--------LVHRQTACATIKHMALGVYGFGCED 1261 (1359)
Q Consensus 1191 LkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL-~~VlPlLedaL~D~D--------~~VRqtA~saIk~LAl~~~glG~Ed 1261 (1359)
|+.+...|+..++++|+.++..- .....| ..++|.|..+|...+ ..+...||.++..|.-+-. ....
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~--~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~--~~~~ 439 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDA--RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL--EAAK 439 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCh--hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH--HHHH
Confidence 99999999999999999987643 334444 568888888887652 4556667777766641100 0111
Q ss_pred HHh--hhHHhhhcccccC--ChHHHHHHHHHHHHH
Q psy10461 1262 ALT--HLLNYVWPNIFET--SPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1262 ali--HlLnlvlPnI~Et--sp~Vi~~ileaLeaL 1292 (1359)
++. ..++.++..+... ++.+...+...|..|
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 111 2344455444333 556665555555443
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.37 E-value=1.4e-05 Score=95.88 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=143.6
Q ss_pred hHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHhhCCCchhhHH-H---HHHHHHHHHHHHhhHHHHHHHHHHH
Q psy10461 1071 LLPRLTPILK-----------NRHEKVQENCIDLVGRIADRGPEYVSARE-W---MRICFELLELLKAHKKAIRRATVNT 1135 (1359)
Q Consensus 1071 lLP~L~~LLk-----------Dr~~rVR~AAielIg~IA~~g~e~v~~kE-~---mrIc~eLLelLkD~~~sVR~AAv~t 1135 (1359)
.++.|+.++. +.+..+++.++.+|..|+..... .+. + ...+..|+.+|+.....|+..|+.+
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~---~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 266 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---NKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc---cHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 5666777663 12357899999999999863221 111 1 1134456777888788999999999
Q ss_pred HHHHHHHhCch--------hHHHHHHHhh-hcccchhHHHHHHHHHHHhhhcC--------ccccHHHHHHhcCCCCc--
Q psy10461 1136 FGYIAKAIGPH--------DVLATLLNNL-KVQERQNRVCTTVAIAIVAETCS--------PFTVLPALMNEYRVPEL-- 1196 (1359)
Q Consensus 1136 Lg~IAk~~Gpe--------dVlp~LL~~L-k~qe~~VRv~ta~AIg~LAea~g--------P~~VLPaLLnlLkDpE~-- 1196 (1359)
|..|+..-+.+ ..++.|+..| +..+..++..++.++..|+..+. -...||.|+++|+.+..
T Consensus 267 L~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcc
Confidence 99997521111 3466778764 44455677777778887776441 23689999999987654
Q ss_pred --hhHHHHHHHHHHHHHHh--hhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHh--hhHH
Q psy10461 1197 --NVQNGVLKALSFLFEYI--GEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT--HLLN 1268 (1359)
Q Consensus 1197 --nVR~~VlkaLs~Iae~I--G~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~Edali--HlLn 1268 (1359)
+|+..++++|..++.++ ++.....+ .-.+|.|..+|.+.+..++..|+.+|..|+.+... ....+. ..++
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~i~~~G~I~ 424 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK--DQEALWDMGAVS 424 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH--HHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHH
Confidence 48999999998887642 22222222 35688888899988888998899999998732110 112222 1245
Q ss_pred hhhcccccCChHHHHHHHHHHHHHHH
Q psy10461 1269 YVWPNIFETSPHLVQAFMDAVEGLRV 1294 (1359)
Q Consensus 1269 lvlPnI~Etsp~Vi~~ileaLeaLr~ 1294 (1359)
.+...+...++.++..+..+|..|..
T Consensus 425 ~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 425 MLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 55555555677788777777766643
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.33 E-value=9.4e-06 Score=90.08 Aligned_cols=196 Identities=12% Similarity=0.110 Sum_probs=136.4
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhcccccccchHhH
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQI 987 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~~ikPyl~qI 987 (1359)
|-..|.+.+|..|..|++.+.++.......... +..+ ..+..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~--------~~~~-----------------------------~~~~~~ 56 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISR--------DDNI-----------------------------QIYWRD 56 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC-----------------------------------------------CCTTSC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccc--------hhHH-----------------------------HHHHHH
Confidence 446899999999999999998877644332100 1000 112234
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh-----HHhHHHHHHHHHHHH-hcccChHHHHHHHHHHHHHHHHhCC
Q psy10461 988 CGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ-----EEKLMGHLGVVLYEY-LGEEYPEVLGSILGALKAIVNVIGM 1061 (1359)
Q Consensus 988 LpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~-----e~~lL~~Ll~iLle~-L~De~pEVl~siL~AL~aIa~vlG~ 1061 (1359)
.+.+...+.|.+..|-..+++++..++..+.... ....+..+++.|++. |++..+-++..++.++..++...+
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~- 135 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT- 135 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-
Confidence 5566678899999999999999999987654211 134566788888887 788888777777777777765432
Q ss_pred CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCCCchhhHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10461 1062 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD-RGPEYVSAREWM-RICFELLELLKAHKKAIRRATVNTFGYI 1139 (1359)
Q Consensus 1062 ~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~e~v~~kE~m-rIc~eLLelLkD~~~sVR~AAv~tLg~I 1139 (1359)
+...++..+...+++++|+||..++..|..+.. .|...++.+... .++..+..+|.|.+..||.+|.+.++.|
T Consensus 136 -----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 136 -----SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp -----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 134567777778899999999999999998765 566555544322 2444456778999999999999999999
Q ss_pred HHHhCch
Q psy10461 1140 AKAIGPH 1146 (1359)
Q Consensus 1140 Ak~~Gpe 1146 (1359)
-..+|+.
T Consensus 211 y~~~G~~ 217 (278)
T 4ffb_C 211 YKVTGNN 217 (278)
T ss_dssp HTC----
T ss_pred HHHhCcc
Confidence 9988863
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.26 E-value=5.6e-06 Score=93.94 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhhcccccccchHhHHHHHHH-hhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcc-c
Q psy10461 964 VMLNGFGTIVNQLGKRVKPYLPQICGTILW-RLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM-GHLGVVLYEYLGE-E 1040 (1359)
Q Consensus 964 v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~-LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL-~~Ll~iLle~L~D-e 1040 (1359)
.++..|..+++..+....-+-...++.+.. +|+++++.||..|+++|++++..-..+.. .++ ...++.|+..|.. .
T Consensus 59 ~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~-~vv~~g~l~~Ll~LL~~~~ 137 (296)
T 1xqr_A 59 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE-QVLGLGALRKLLRLLDRDA 137 (296)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH-HHHHCCCHHHHHHHHccCC
Confidence 455556666654432111112346788888 99999999999999999999854332222 122 2467778888864 3
Q ss_pred ChHHHHHHHHHHHHHHHHhC--CCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHH
Q psy10461 1041 YPEVLGSILGALKAIVNVIG--MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELL 1118 (1359)
Q Consensus 1041 ~pEVl~siL~AL~aIa~vlG--~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLL 1118 (1359)
.++++..++++|..++.... .+.+ .....+|.|+.++++.+.+||..++.+|..++....+.....--...+..|+
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~--~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQF--LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHH--HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHH--HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 67888888899998864210 0000 0125788999999999999999999999999875433222110112455566
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q psy10461 1119 ELLKAHKKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1119 elLkD~~~sVR~AAv~tLg~IAk~ 1142 (1359)
.+|.+....||+.|..+|+.|+..
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 777777777888888888888764
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.26 E-value=8.6e-06 Score=90.37 Aligned_cols=179 Identities=9% Similarity=0.075 Sum_probs=128.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch-
Q psy10461 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE----WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH- 1146 (1359)
Q Consensus 1072 LP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE----~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe- 1146 (1359)
|| +..-|.+++|+.|..+++.+..+...........+ +..++..+-..++|.+..|...+++++..+++.++..
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 55678899999999999999887653321111110 1122223345678999999999999999999877652
Q ss_pred -----------hHHHHHHHh-hhcccchhHHHHHHHHHHHhhhcCc-cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHh
Q psy10461 1147 -----------DVLATLLNN-LKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVPELNVQNGVLKALSFLFEYI 1213 (1359)
Q Consensus 1147 -----------dVlp~LL~~-Lk~qe~~VRv~ta~AIg~LAea~gP-~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~I 1213 (1359)
.+++.|+.. +.+....+|..+..++-.+++.+++ +.++..++..++...+.||..++..|..+.+.+
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 234444443 3344445677767777777777765 578889999999999999999999999999988
Q ss_pred hhhc---hhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1214 GEMG---KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1214 G~~~---kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
|... +..+..+++.+..++.|+|..||..|..++..+-
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8632 3355677788888999999999999888887764
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.25 E-value=1.1e-05 Score=93.74 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCc---hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHH-HH--HHHH
Q psy10461 1042 PEVLGSILGALKAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE-WM--RICF 1115 (1359)
Q Consensus 1042 pEVl~siL~AL~aIa~vlG~~~lsp~---l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE-~m--rIc~ 1115 (1359)
+++...+..+|..++..- ...... ....+|.|+.+|++.+..||+.++.+|..|+....+ ..+. +. ..+.
T Consensus 98 ~~~q~~Aa~aL~nLa~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~--~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV--NSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH--HHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH--HHHHHHHHCCCHH
Confidence 455666667777664211 000000 124699999999999999999999999999763111 1111 11 1344
Q ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHHHhC--------chhHHHHHHHhhhcccc----hhHHHHHHHHHHHhhhc--Cc
Q psy10461 1116 ELLELL-KAHKKAIRRATVNTFGYIAKAIG--------PHDVLATLLNNLKVQER----QNRVCTTVAIAIVAETC--SP 1180 (1359)
Q Consensus 1116 eLLelL-kD~~~sVR~AAv~tLg~IAk~~G--------pedVlp~LL~~Lk~qe~----~VRv~ta~AIg~LAea~--gP 1180 (1359)
.|+.+| +.....+++.|+.+|..|+.... ....++.|+..|+.... .++..++-++..|+..+ .+
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 253 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH
Confidence 566764 44567899999999999886211 12356677777775432 36777777777777521 22
Q ss_pred --------cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy10461 1181 --------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1181 --------~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~L 1250 (1359)
...+|.|+.+|+++...||..++++|..++..- .....++ .-++|.|.+++...+..+|..|+.+|..|
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 268999999999999999999999998876311 1122333 35789999999999999999999999999
Q ss_pred Hhh
Q psy10461 1251 ALG 1253 (1359)
Q Consensus 1251 Al~ 1253 (1359)
+.+
T Consensus 333 ~~~ 335 (354)
T 3nmw_A 333 MAN 335 (354)
T ss_dssp HTT
T ss_pred HcC
Confidence 754
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.20 E-value=4.6e-05 Score=98.54 Aligned_cols=295 Identities=14% Similarity=0.211 Sum_probs=190.2
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhc-CccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccc--ccccch
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNL-GAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGK--RVKPYL 984 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~L-Gpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~--~ikPyl 984 (1359)
++..+.-.+..-|+.|+..+..+...- +...+.. .+++.+.-++.+..+. +.++.+++.+++..+. .+.||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE----HFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH----HHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccch----hHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccch
Confidence 444444433444566777776665532 2222222 4566666666554333 6677789999977654 467999
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc--ChHHHHHHHHHHHHHHHHhCCC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE--YPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De--~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
-.++|.++.++.|+...||.+|...+..|+..+.+ .-+..++|.|+++|... .+.. -.++..++.+++.. .+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~kw~~k-~~~l~~~~~~~~~~-~~ 167 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP----VAIKALLPHLTNAIVETNKWQEK-IAILAAFSAMVDAA-KD 167 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHh-HH
Confidence 99999999999999999999999999999988873 34477889999998432 2222 23556677766553 22
Q ss_pred CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10461 1063 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1063 ~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~-g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk 1141 (1359)
++.-.+.+++|.+...+-|-++.|..++...+..++.. +..++..+ ...|+.-+.++
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~-----~~~~~~~~~~p----------------- 225 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERF-----IPSLIQCIADP----------------- 225 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGG-----HHHHHHHHHCT-----------------
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhh-----HHHHHHHhcCh-----------------
Confidence 23233556666666677899999999999999998873 33333322 22233333333
Q ss_pred HhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhh--hchh
Q psy10461 1142 AIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKD 1219 (1359)
Q Consensus 1142 ~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~--~~kd 1219 (1359)
++ .|..+..|...-. |...++-+++ -++|.|.+.|++.+..++..++--+..|++.+.. ....
T Consensus 226 ----~~-~~~~~~~l~~~tf-v~~v~~~~l~---------~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~ 290 (986)
T 2iw3_A 226 ----TE-VPETVHLLGATTF-VAEVTPATLS---------IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAP 290 (986)
T ss_dssp ----TH-HHHHHHHHTTCCC-CSCCCHHHHH---------HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ----hh-hHHHHHHhhcCee-EeeecchhHH---------HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhh
Confidence 22 2222222211100 0011111122 3679999999999888888777777888887754 4677
Q ss_pred hHHhHHHHHHHHHhc-cChHHHHHHHHHHHHH
Q psy10461 1220 YIYAVTPLLEDALMD-RDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1220 YL~~VlPlLedaL~D-~D~~VRqtA~saIk~L 1250 (1359)
|++.++|.|+.+... .|+.+|..+..++..|
T Consensus 291 f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 291 FLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 999999999986644 4789998877777776
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.18 E-value=1.6e-05 Score=92.33 Aligned_cols=215 Identities=14% Similarity=0.070 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCch--hchHH
Q psy10461 998 KSAKVRQQAADLISRIAVVMKTCQEEKL--MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI--KDLLP 1073 (1359)
Q Consensus 998 es~~VR~aAAe~Is~LA~vl~~~~e~~l--L~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l--~~lLP 1073 (1359)
.++.++..|++.|.+|+..-.. ....+ ....++.|...|...++++...++++|..++..-+.+ ....+ ..-+|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~k~~i~~~G~Ip 173 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-HHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-HHHHHHHCCCHH
Confidence 3578999999999999843211 11112 2456899999998888999998889888886421000 00001 13688
Q ss_pred HHHHH-hcCCCHHHHHHHHHHHHHHHhhCCCchhhHH-HHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHh--Cc
Q psy10461 1074 RLTPI-LKNRHEKVQENCIDLVGRIADRGPEYVSARE-WMRICFELLELLKAHKK----AIRRATVNTFGYIAKAI--GP 1145 (1359)
Q Consensus 1074 ~L~~L-LkDr~~rVR~AAielIg~IA~~g~e~v~~kE-~mrIc~eLLelLkD~~~----sVR~AAv~tLg~IAk~~--Gp 1145 (1359)
.|+.+ ++..+..+++.++.++..|+..+.+.-...- ....+..|+.+|.+... .|++.|+.+|..|+..+ ++
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 253 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH
Confidence 89986 5677899999999999999874432211110 01133445667765433 58999999999988631 22
Q ss_pred h--------hHHHHHHHhhhcccchhHHHHHHHHHHHhhhc-------CccccHHHHHHhcCCCCchhHHHHHHHHHHHH
Q psy10461 1146 H--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SPFTVLPALMNEYRVPELNVQNGVLKALSFLF 1210 (1359)
Q Consensus 1146 e--------dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~-------gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Ia 1210 (1359)
+ ..++.|+..|+..+..++..++.++..++... ....++|.|+++|+++...+|..++++|..++
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2 35777888888777778888888888887321 11278999999999999999999999998887
Q ss_pred HHhh
Q psy10461 1211 EYIG 1214 (1359)
Q Consensus 1211 e~IG 1214 (1359)
..-.
T Consensus 334 ~~~~ 337 (354)
T 3nmw_A 334 ANRP 337 (354)
T ss_dssp TTCC
T ss_pred cCCH
Confidence 6533
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.13 E-value=6.9e-05 Score=84.99 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=127.8
Q ss_pred hchHHHHHHHhcCCCH------------HHHHHHHHHHHHHHhhCCCchhhHHH--HHHHHHHHH-HHHhhHHHHHHHHH
Q psy10461 1069 KDLLPRLTPILKNRHE------------KVQENCIDLVGRIADRGPEYVSAREW--MRICFELLE-LLKAHKKAIRRATV 1133 (1359)
Q Consensus 1069 ~~lLP~L~~LLkDr~~------------rVR~AAielIg~IA~~g~e~v~~kE~--mrIc~eLLe-lLkD~~~sVR~AAv 1133 (1359)
-+.++.++.++++..+ .-|..+++.|..++.... ....+ ...+..++. +|++....||..|+
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d---na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD---NAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH---HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh---hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 3456666666665421 235556666666654111 11111 113345678 88888899999999
Q ss_pred HHHHHHHHHhCc--------hhHHHHHHHhhhcc-cchhHHHHHHHHHHHhhhcCc-------cccHHHHHHhcCCCCch
Q psy10461 1134 NTFGYIAKAIGP--------HDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELN 1197 (1359)
Q Consensus 1134 ~tLg~IAk~~Gp--------edVlp~LL~~Lk~q-e~~VRv~ta~AIg~LAea~gP-------~~VLPaLLnlLkDpE~n 1197 (1359)
.+||.|+.. ++ ...++.|+..|+.. +..+|..++.|++.++....+ ...+|.|+.+|++++..
T Consensus 104 ~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 104 QLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 999999874 22 14577888888854 556899999999988754422 26899999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhh
Q psy10461 1198 VQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALG 1253 (1359)
Q Consensus 1198 VR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~ 1253 (1359)
||..+|++|+.++.. .+....++ .-++|.|..+|...|..+|..|+.+|..|+-+
T Consensus 183 v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999998875 33333344 45888888999999999999999999988743
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.13 E-value=8.7e-05 Score=83.15 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=118.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhC---CCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHh
Q psy10461 1079 LKNRHEKVQENCIDLVGRIADRG---PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNN 1155 (1359)
Q Consensus 1079 LkDr~~rVR~AAielIg~IA~~g---~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~ 1155 (1359)
+.|.+..|-..+++++..+.... ...+...|...++..+++=|.|.++.||..+-..+..|...++++.+.+.+++.
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g 175 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA 175 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 44889999999999999875521 112333334445555566678899999999999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHhhhcC--ccccH---HHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHh
Q psy10461 1156 LKVQERQNRVCTTVAIAIVAETCS--PFTVL---PALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA 1223 (1359)
Q Consensus 1156 Lk~qe~~VRv~ta~AIg~LAea~g--P~~VL---PaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~ 1223 (1359)
+++.++..|.-+...++.+-+..| |...+ |.+.+++.|++.+||..++.++..+...+|+..-.|+..
T Consensus 176 ~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 176 LKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred HccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 999988899988888888877777 34677 999999999999999999999999999999865555543
No 88
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.00089 Score=84.56 Aligned_cols=309 Identities=12% Similarity=0.118 Sum_probs=189.8
Q ss_pred ChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHH--HHHHHHHHHhhccCchhH--HHHHHHHHHHHhh
Q psy10461 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLE--EQLIDGILYAFQEQTTED--VVMLNGFGTIVNQ 975 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~--~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~ 975 (1359)
...+....+...|.+++...|+.|++.|..+.. .++ +.+.++ ...+..|+..+.+..... .-++..|+.+++.
T Consensus 331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl--~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSL--KAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT--SSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC--CHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 345577888888888877779999999987642 222 111111 233455555555421111 1223333333332
Q ss_pred cccc---------ccc------------------------------chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q psy10461 976 LGKR---------VKP------------------------------YLPQICGTILWRLNNKSAKVRQQAADLISRIAVV 1016 (1359)
Q Consensus 976 Lg~~---------ikP------------------------------yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~v 1016 (1359)
.... ++. +-..++|.+..+++..++.+|.+|+++|.+|+..
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 2210 000 1123778899999999999999999999999865
Q ss_pred hhhhhHHhHHHHHHHHHHHHhcccChH---HHHHHHHHHHHHHHHhCCCC-C-CCchhchHHHHHHHhcC-CC-------
Q psy10461 1017 MKTCQEEKLMGHLGVVLYEYLGEEYPE---VLGSILGALKAIVNVIGMTK-M-TPPIKDLLPRLTPILKN-RH------- 1083 (1359)
Q Consensus 1017 l~~~~e~~lL~~Ll~iLle~L~De~pE---Vl~siL~AL~aIa~vlG~~~-l-sp~l~~lLP~L~~LLkD-r~------- 1083 (1359)
-+ +...-.=...+++|+..|.+.... ....++.+|..+........ + ......-+|.|+.+|.. ..
T Consensus 488 ~~-~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~ 566 (778)
T 3opb_A 488 KN-FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH 566 (778)
T ss_dssp GG-GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred HH-HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccc
Confidence 22 221111124567788887554322 45567777777763321110 0 00123688999998872 11
Q ss_pred ------HHHHHHHHHHHHHHHhhCC---CchhhHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc--hhH-
Q psy10461 1084 ------EKVQENCIDLVGRIADRGP---EYVSAREWMR---ICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HDV- 1148 (1359)
Q Consensus 1084 ------~rVR~AAielIg~IA~~g~---e~v~~kE~mr---Ic~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp--edV- 1148 (1359)
..-+..++.+|..||.... +.+..+ +.+ .+..+.++|.+.+..||++|+.++..|+..-.. +.+
T Consensus 567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~-Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~ 645 (778)
T 3opb_A 567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKH-IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFF 645 (778)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH-HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTS
T ss_pred ccccccHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 1236788899999988432 122111 221 334456777778889999999999999852110 111
Q ss_pred ----------HHHHHHhhhcccchhHHHHHHHHHHHhhhcC-------c-cccHHHHHHhcCC--CCchhHHHHHHHHHH
Q psy10461 1149 ----------LATLLNNLKVQERQNRVCTTVAIAIVAETCS-------P-FTVLPALMNEYRV--PELNVQNGVLKALSF 1208 (1359)
Q Consensus 1149 ----------lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~g-------P-~~VLPaLLnlLkD--pE~nVR~~VlkaLs~ 1208 (1359)
++.|+..+...+..+|.+++-|++.++.... . ...+..+++.|++ ++.++|.+++.++..
T Consensus 646 ~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 646 NLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725 (778)
T ss_dssp CCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5567788888888889988888887743221 1 2578889999998 889999999999999
Q ss_pred HHHHh
Q psy10461 1209 LFEYI 1213 (1359)
Q Consensus 1209 Iae~I 1213 (1359)
|+++.
T Consensus 726 L~~~~ 730 (778)
T 3opb_A 726 LFEVI 730 (778)
T ss_dssp HHTTC
T ss_pred HHHhh
Confidence 99855
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.94 E-value=5.3e-05 Score=90.99 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc---------hhHHHHHHHhhh-------cccc---hhHHHHHHHHHH
Q psy10461 1113 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGP---------HDVLATLLNNLK-------VQER---QNRVCTTVAIAI 1173 (1359)
Q Consensus 1113 Ic~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp---------edVlp~LL~~Lk-------~qe~---~VRv~ta~AIg~ 1173 (1359)
+|..|+.-|-|.+|.+|.-|+-.|..|.+..|. .++...|+-.|. +.+. .||.+++.++|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 787778888899999999999999999988763 255555543332 1122 489999999999
Q ss_pred HhhhcCc-cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q psy10461 1174 VAETCSP-FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1174 LAea~gP-~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl 1252 (1359)
+ ..+.+ +.+|-.++..+..++-+||.+.+-.|..+.+.+. + +..|+|++...|.|.|.+||..|++++.-++
T Consensus 255 L-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA- 327 (800)
T 3oc3_A 255 I-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP- 327 (800)
T ss_dssp H-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-
T ss_pred H-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-
Confidence 9 66644 4777777777788999999999999877722222 2 6789999999999999999999999988776
Q ss_pred hhcCCCchhHHhhhHHhhhcccccCCh--HHHHHHHHHHHHHHHhhc----hHHHHHhHhhhhccccccchhhHHHHHHh
Q psy10461 1253 GVYGFGCEDALTHLLNYVWPNIFETSP--HLVQAFMDAVEGLRVALG----PVRILQYVLQGLFHPARKVRDVYWKIYNS 1326 (1359)
Q Consensus 1253 ~~~glG~EdaliHlLnlvlPnI~Etsp--~Vi~~ileaLeaLr~aLG----~~~ll~~vLpgLfhpA~kvrd~~WRvyn~ 1326 (1359)
.-+.+..+++.+|..+.+.+. .-...+|+.+..++..=. ...+++.++|-+.|....||...++...+
T Consensus 328 ------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~t 401 (800)
T 3oc3_A 328 ------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKN 401 (800)
T ss_dssp ------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTT
T ss_pred ------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 114567888889987765211 112345555555543211 12577889999999999999999998855
Q ss_pred hh
Q psy10461 1327 LY 1328 (1359)
Q Consensus 1327 ~y 1328 (1359)
+.
T Consensus 402 fL 403 (800)
T 3oc3_A 402 LS 403 (800)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 90
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.94 E-value=0.012 Score=77.24 Aligned_cols=369 Identities=11% Similarity=0.096 Sum_probs=188.1
Q ss_pred hHHHHH-hhhcCCCCHHHHHHHHHHHHHHHHhcCccchhh---hHHHHHHHHH---HHh-------hccCchhH----HH
Q psy10461 903 EIINRV-VDDLKDENEQYRKMVMESIEKTMSNLGAADIDS---RLEEQLIDGI---LYA-------FQEQTTED----VV 964 (1359)
Q Consensus 903 eiI~~L-l~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~---~L~~~Lld~L---Lpl-------Lqd~~~eD----~v 964 (1359)
.++..| ...| .++.+|..|+++|..|+.. ......+ .+...++..+ +|. +.....+| ..
T Consensus 247 ~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k-~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~ 323 (1073)
T 3gjx_A 247 KLISTLIYKFL--NVPMFRNVSLKCLTEIAGV-SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQN 323 (1073)
T ss_dssp SHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS-CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHH
T ss_pred hHHHHHHHHhc--CChHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHH
Confidence 356665 3555 3668999999999999885 2222222 1222222221 221 11122333 22
Q ss_pred HHHHHHHHHhhccccc------ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhh------------------
Q psy10461 965 MLNGFGTIVNQLGKRV------KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTC------------------ 1020 (1359)
Q Consensus 965 ~lkaLg~Lae~Lg~~i------kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~------------------ 1020 (1359)
+++.|..+++.....+ .+++..++..++.....++..|=.-.-+.|..|+..+-..
T Consensus 324 l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~ 403 (1073)
T 3gjx_A 324 LSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFD 403 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 3334444433333222 2344455555677777888888888999999998766311
Q ss_pred ---h---HHhHHHHHHHHHHHHhc--------c-cC--------hHHHH-HHHHHHHHHH---HHhCCCCCCCchhchHH
Q psy10461 1021 ---Q---EEKLMGHLGVVLYEYLG--------E-EY--------PEVLG-SILGALKAIV---NVIGMTKMTPPIKDLLP 1073 (1359)
Q Consensus 1021 ---~---e~~lL~~Ll~iLle~L~--------D-e~--------pEVl~-siL~AL~aIa---~vlG~~~lsp~l~~lLP 1073 (1359)
. -...+.++..++...|. | ++ .|.-. .+...+..+. ..++... ....+++
T Consensus 404 ~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~---~~~i~~~ 480 (1073)
T 3gjx_A 404 IPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVD---TEIIMTK 480 (1073)
T ss_dssp SCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHH---HHHHHHH
Confidence 0 02456666677776652 0 11 11100 1111222221 1222110 0222333
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1074 RLTPILK--NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-----AHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1074 ~L~~LLk--Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk-----D~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
.+...+. +-+|..++++..++|.|+....+.....-+..+...|+.+.. |++.-||...+-++|...+.+...
T Consensus 481 ~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h 560 (1073)
T 3gjx_A 481 KLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH 560 (1073)
T ss_dssp HHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC
Confidence 3333222 356999999999999998533321121213344444454442 333345444445666655543210
Q ss_pred -hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhc--------
Q psy10461 1147 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG-------- 1217 (1359)
Q Consensus 1147 -dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~-------- 1217 (1359)
.++ ..++..|+.-+.++.+.|+..+|.|+..+++.|+...
T Consensus 561 ~~~L-------------------------------~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~ 609 (1073)
T 3gjx_A 561 WKFL-------------------------------KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEV 609 (1073)
T ss_dssp HHHH-------------------------------HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCS
T ss_pred HHHH-------------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 011 1345556666677777888888888888888887632
Q ss_pred hhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccccc----------------CChH-
Q psy10461 1218 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE----------------TSPH- 1280 (1359)
Q Consensus 1218 kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~E----------------tsp~- 1280 (1359)
..|+.+++..+..+..+=+..-......++.+++ ...+.+.....++..+++...+ .+++
T Consensus 610 ~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi---~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~ 686 (1073)
T 3gjx_A 610 MPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI---GAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPET 686 (1073)
T ss_dssp SCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHH
Confidence 2366666665555544323222222334444443 4444433333344433322211 1332
Q ss_pred --HHHHHHHHHHHHHHhhchHH--HHHhHhhhhcc
Q psy10461 1281 --LVQAFMDAVEGLRVALGPVR--ILQYVLQGLFH 1311 (1359)
Q Consensus 1281 --Vi~~ileaLeaLr~aLG~~~--ll~~vLpgLfh 1311 (1359)
.+.+++.+..+++.++|..+ .+..+++.+++
T Consensus 687 i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~ 721 (1073)
T 3gjx_A 687 VKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLN 721 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHH
Confidence 33567888889999999855 45556665543
No 91
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.94 E-value=8.2e-07 Score=87.64 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=89.9
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhH
Q psy10461 1069 KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 1148 (1359)
Q Consensus 1069 ~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedV 1148 (1359)
...++.+..+|+|.++.||..++..++.+... .+ ..|+..|+|.+..||..|+.+|+.++ ....
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~---~~---------~~L~~~L~d~~~~vR~~A~~aL~~~~----~~~a 74 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE---AF---------EPLLESLSNEDWRIRGAAAWIIGNFQ----DERA 74 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST---TH---------HHHHHGGGCSCHHHHHHHHHHHGGGC----SHHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch---HH---------HHHHHHHcCCCHHHHHHHHHHHHhcC----CHHH
Confidence 35677788889999999999999888766431 11 34467889999999999999998864 4567
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHH
Q psy10461 1149 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALS 1207 (1359)
Q Consensus 1149 lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs 1207 (1359)
++.|+..++..+..||..++.+++.++ ....+|.|+..++|+++.||..++.+|+
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG----GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 788888888888889999999999875 3458999999999999999999998874
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.93 E-value=0.00033 Score=78.45 Aligned_cols=153 Identities=13% Similarity=0.176 Sum_probs=117.4
Q ss_pred hHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh---HHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhC
Q psy10461 984 LPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ---EEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 984 l~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~---e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG 1060 (1359)
+.-++..+..++.|.++.|=..+.+.+..+...+.... .+.....++|.|++.+||....++..+...+..+..+..
T Consensus 85 lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~ 164 (266)
T 2of3_A 85 SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG 164 (266)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC
Confidence 34456655656779999999999999999988886421 134457789999999999887787777777777777653
Q ss_pred CCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10461 1061 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD-RGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 1139 (1359)
Q Consensus 1061 ~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~I 1139 (1359)
...+++.+..-+++++||+|..|++.++.+.. .|.. +.+ ...+...+..+|.|.+.+||.+|++++..+
T Consensus 165 -------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~-~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 165 -------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLK-SLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp -------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGG-GGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccc-cccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34688889888899999999999999999877 5654 222 111113445788999999999999999999
Q ss_pred HHHhCch
Q psy10461 1140 AKAIGPH 1146 (1359)
Q Consensus 1140 Ak~~Gpe 1146 (1359)
=...|..
T Consensus 235 y~~~Gd~ 241 (266)
T 2of3_A 235 FKFEGDQ 241 (266)
T ss_dssp HHHHTTH
T ss_pred HHHhhHH
Confidence 8888864
No 93
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.0056 Score=77.41 Aligned_cols=365 Identities=10% Similarity=0.081 Sum_probs=197.3
Q ss_pred HHHHhhhc-CCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch-hH-H-HHHHHHHHHHhhccccc
Q psy10461 905 INRVVDDL-KDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-ED-V-VMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 905 I~~Ll~~L-KDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~-eD-~-v~lkaLg~Lae~Lg~~i 980 (1359)
.+.+...+ +..+..+...+++.|+..+ +++.++.-+.+.+++.|.+.-. +. + .++-++..+.... ..-
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaAC-------i~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~-~~~ 328 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSAC-------IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFT-KLT 328 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHC-------CSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGG-TCT
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHh-------CCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCC-CCC
Confidence 44455455 3455666666666665432 3344555556666665543211 12 1 1111222222211 122
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh--hhhhHHhHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHH
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM--KTCQEEKLMGHLGVVLYEYLGE-EYPEVLGSILGALKAIVN 1057 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl--~~~~e~~lL~~Ll~iLle~L~D-e~pEVl~siL~AL~aIa~ 1057 (1359)
..-+.++...+...+.+.+...|+-|.+.|+-++-.- +.....+ ..++..|++.++. .++++.-.++..|..+.+
T Consensus 329 ~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d--~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 329 CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN--ESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC--HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC--HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 3456789999998888877777999999998886321 1100001 2234455555653 455555555454444443
Q ss_pred HhCCCCCCCchhchHHHHHHHhcCCCHHH------HHHHHHH----HHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHH
Q psy10461 1058 VIGMTKMTPPIKDLLPRLTPILKNRHEKV------QENCIDL----VGRIADRGPEYVSAREWMRICFELLELLKAHKKA 1127 (1359)
Q Consensus 1058 vlG~~~lsp~l~~lLP~L~~LLkDr~~rV------R~AAiel----Ig~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~s 1127 (1359)
.. +.+++ ...-+-.+....+.+.+.. -...... ...+.+.| +...|+.+|+.....
T Consensus 407 ~~--~~~~~-e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaG-----------vIp~Lv~Ll~S~s~~ 472 (778)
T 3opb_A 407 LP--EEXXX-XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTE-----------LISFLKREMHNLSPN 472 (778)
T ss_dssp CC--CCCCC-CCC------------------CCTHHHHHHHHHHHHHHHTTTTT-----------HHHHHHHHGGGSCHH
T ss_pred CC--cccch-hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCc-----------CHHHHHHHHcCCCHH
Confidence 32 11111 0111111111111111110 0000000 00111111 333446778888889
Q ss_pred HHHHHHHHHHHHHHHhCc------hhHHHHHHHhhhcccc---hhHHHHHHHHHHHhhhcC------c---cccHHHHHH
Q psy10461 1128 IRRATVNTFGYIAKAIGP------HDVLATLLNNLKVQER---QNRVCTTVAIAIVAETCS------P---FTVLPALMN 1189 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~Gp------edVlp~LL~~Lk~qe~---~VRv~ta~AIg~LAea~g------P---~~VLPaLLn 1189 (1359)
+|+.|+.+|..|+..-.. +..++.|+..+..... ..|..++.|++.++-... . .+.+|.|++
T Consensus 473 ~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~ 552 (778)
T 3opb_A 473 CKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFE 552 (778)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHH
Confidence 999999999999864111 2346678888775432 278899999998874332 1 378999999
Q ss_pred hcC-CCCch------------h-HHHHHHHHHHHHHHhh---hh-chhhHH--hHHHHHHHHHhccChHHHHHHHHHHHH
Q psy10461 1190 EYR-VPELN------------V-QNGVLKALSFLFEYIG---EM-GKDYIY--AVTPLLEDALMDRDLVHRQTACATIKH 1249 (1359)
Q Consensus 1190 lLk-DpE~n------------V-R~~VlkaLs~Iae~IG---~~-~kdYL~--~VlPlLedaL~D~D~~VRqtA~saIk~ 1249 (1359)
+|. +++.. . ++.++.+|.-++..=+ +. ....+. ..+|.|++++.+.+..+|..|+.++..
T Consensus 553 LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N 632 (778)
T 3opb_A 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN 632 (778)
T ss_dssp TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 998 33321 2 6799999988886431 11 233444 489999999998899999999999999
Q ss_pred HHhhhcCC-----Cch-hHHhhhHHhhhcccccCChHHHHHHHHHHHHHH
Q psy10461 1250 MALGVYGF-----GCE-DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR 1293 (1359)
Q Consensus 1250 LAl~~~gl-----G~E-daliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr 1293 (1359)
|+..-.+. ..+ +.-..-++.++..+-..+..++.++..++..+.
T Consensus 633 L~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 633 MMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 97433321 111 110011344444444578888888777775553
No 94
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.90 E-value=0.0054 Score=80.59 Aligned_cols=329 Identities=15% Similarity=0.184 Sum_probs=194.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccC---ch---hH-HHHHHHHHHHHhhccc-cccc
Q psy10461 911 DLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ---TT---ED-VVMLNGFGTIVNQLGK-RVKP 982 (1359)
Q Consensus 911 ~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~---~~---eD-~v~lkaLg~Lae~Lg~-~ikP 982 (1359)
..||-+....+.+++..-.....+++. .++..+++.++++ +. .. +.++-++|+++..+.. .-++
T Consensus 446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~--------~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~ 517 (1073)
T 3gjx_A 446 FMKDTDSINLYKNMRETLVYLTHLDYV--------DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKR 517 (1073)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHH
T ss_pred HHhhcchHHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccc
Confidence 345554433334444332334456665 4555666666532 11 12 6777788888866654 3468
Q ss_pred chHhHHHHHHHhhcCC-----CHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy10461 983 YLPQICGTILWRLNNK-----SAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN 1057 (1359)
Q Consensus 983 yl~qILpiIl~LL~De-----s~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~ 1057 (1359)
++.++++.|+.++..+ .+.||...+.++|+....+.. ...+|..++.-|++.+.+.+++|...++.+|..++.
T Consensus 518 ~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~--h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 518 FLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA--HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh--CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999998655 456777777899999998873 256888888899999999899999999899999988
Q ss_pred HhCCCC-------CCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHH-HHH-------HHH----
Q psy10461 1058 VIGMTK-------MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMR-ICF-------ELL---- 1118 (1359)
Q Consensus 1058 vlG~~~-------lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mr-Ic~-------eLL---- 1118 (1359)
..+..- ..|++.+++..+..+..+-..+-.....++++.+++..+......+++. +|. .++
T Consensus 596 ~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~ 675 (1073)
T 3gjx_A 596 KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQAT 675 (1073)
T ss_dssp HTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 865321 2344555555555566666777778888999998885543221111111 111 111
Q ss_pred ---HHHHhhHHHHHH--HHHHHHHHHHHHhCch------hHHHHHHHhhhc-----------------ccchhHHHHHHH
Q psy10461 1119 ---ELLKAHKKAIRR--ATVNTFGYIAKAIGPH------DVLATLLNNLKV-----------------QERQNRVCTTVA 1170 (1359)
Q Consensus 1119 ---elLkD~~~sVR~--AAv~tLg~IAk~~Gpe------dVlp~LL~~Lk~-----------------qe~~VRv~ta~A 1170 (1359)
++|+|.. .+++ ...++...++...|.. .+.+.+++..+. +...+|.+-++-
T Consensus 676 ~~~~~~~d~~-~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik 754 (1073)
T 3gjx_A 676 KNVDILKDPE-TVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVK 754 (1073)
T ss_dssp HCGGGGGCHH-HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHH
T ss_pred cCchhccChH-HHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHH
Confidence 1123332 1332 2234555667777762 233334433221 111123332222
Q ss_pred HHH--Hhhh-cC----c----cc----cHHHHHHhcCCCCchhH-HHHHHHHHHHHHHhhhhchhhHHhHHHHHH----H
Q psy10461 1171 IAI--VAET-CS----P----FT----VLPALMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLE----D 1230 (1359)
Q Consensus 1171 Ig~--LAea-~g----P----~~----VLPaLLnlLkDpE~nVR-~~VlkaLs~Iae~IG~~~kdYL~~VlPlLe----d 1230 (1359)
-++ +.+. ++ + .. ++.+++..|+...|..| ..|+..++.+...+|....+++..|+..+. +
T Consensus 755 ~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~ 834 (1073)
T 3gjx_A 755 RETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLN 834 (1073)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 111 2221 11 1 12 44445566777777778 488999999999999887787777666443 2
Q ss_pred HHh---ccChHHHHHHHHHHHHH
Q psy10461 1231 ALM---DRDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1231 aL~---D~D~~VRqtA~saIk~L 1250 (1359)
++. ++.++||..--..++.+
T Consensus 835 mi~~~f~~~Pe~r~~ff~ll~~~ 857 (1073)
T 3gjx_A 835 MINKDFEEYPEHRTNFFLLLQAV 857 (1073)
T ss_dssp HHSSCSSSCHHHHHHHHHHHHHH
T ss_pred HHhCCcccCcHHHHHHHHHHHHH
Confidence 343 33688994433444444
No 95
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.90 E-value=0.0096 Score=79.29 Aligned_cols=264 Identities=14% Similarity=0.094 Sum_probs=141.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh-hhHHhHHHHH----HHHHHHHh--------cccChHHHHHHHHHHH
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKT-CQEEKLMGHL----GVVLYEYL--------GEEYPEVLGSILGALK 1053 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~-~~e~~lL~~L----l~iLle~L--------~De~pEVl~siL~AL~ 1053 (1359)
+++.+..++.+ +.+|.+|+++|..|+..-.. .....++..+ +.-+++.+ .|++.+.+..++..+.
T Consensus 250 ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~ 327 (1204)
T 3a6p_A 250 LLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLC 327 (1204)
T ss_dssp HHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHH
Confidence 55555555553 56788888888888752111 0011222222 11233332 2233455554444444
Q ss_pred HHHHHh----CC---CCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---C-CchhhH--HHHHHHHH-H--
Q psy10461 1054 AIVNVI----GM---TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG---P-EYVSAR--EWMRICFE-L-- 1117 (1359)
Q Consensus 1054 aIa~vl----G~---~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g---~-e~v~~k--E~mrIc~e-L-- 1117 (1359)
.++..+ .. ....+.+..+++.+..+.++.+..|-..+.+.-..+...- . +.+... .+.+++.. +
T Consensus 328 ~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k 407 (1204)
T 3a6p_A 328 ALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVK 407 (1204)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 433221 10 0134456778888887777766555555554444333311 0 000000 01111100 0
Q ss_pred -----------HHHHH-h---------hHHHHHHHHHHHHHHHHHHhCchhHHH----HHHHhhhc----c---------
Q psy10461 1118 -----------LELLK-A---------HKKAIRRATVNTFGYIAKAIGPHDVLA----TLLNNLKV----Q--------- 1159 (1359)
Q Consensus 1118 -----------LelLk-D---------~~~sVR~AAv~tLg~IAk~~GpedVlp----~LL~~Lk~----q--------- 1159 (1359)
..|+. | .-...|+...+.+..++... |+..+. .|...+.. .
T Consensus 408 ~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~-p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~ 486 (1204)
T 3a6p_A 408 MGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD-PKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVG 486 (1204)
T ss_dssp CCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTCC-------------
T ss_pred hcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 01220 0 12367999999999998875 333333 33222221 0
Q ss_pred ------------cchhHHHHHHHHHHHhhhc-----Ccc---ccHHHHHHhc---CCCCchhHHHHHHHHHHHHHHhhhh
Q psy10461 1160 ------------ERQNRVCTTVAIAIVAETC-----SPF---TVLPALMNEY---RVPELNVQNGVLKALSFLFEYIGEM 1216 (1359)
Q Consensus 1160 ------------e~~VRv~ta~AIg~LAea~-----gP~---~VLPaLLnlL---kDpE~nVR~~VlkaLs~Iae~IG~~ 1216 (1359)
.+....+...+++.+++.| .+. .++|.|+..+ +...|.+|..++.+++.+++++..
T Consensus 487 ~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~- 565 (1204)
T 3a6p_A 487 TGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY- 565 (1204)
T ss_dssp ----CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-
T ss_pred cccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-
Confidence 1112344556666776666 122 3567777764 344677899999998888877763
Q ss_pred chhhHHhHHHHHHHHHhc------------cChHHHHHHHHHHHHHHhhh
Q psy10461 1217 GKDYIYAVTPLLEDALMD------------RDLVHRQTACATIKHMALGV 1254 (1359)
Q Consensus 1217 ~kdYL~~VlPlLedaL~D------------~D~~VRqtA~saIk~LAl~~ 1254 (1359)
..+|+..|+..|...+.+ ..+.+|..||++++.|+-.+
T Consensus 566 ~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~ 615 (1204)
T 3a6p_A 566 RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY 615 (1204)
T ss_dssp CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 456888888877777766 34578899999999987554
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.79 E-value=0.001 Score=72.91 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=141.0
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch--
Q psy10461 1069 KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-- 1146 (1359)
Q Consensus 1069 ~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe-- 1146 (1359)
++.+-.+..++.|+++.|+.++..+|+.+-+..........+.++.+.++.++++.+..|---|+++++.|-+..+..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 357888889999999999999999999998876555555556677888888899888888888999999998876542
Q ss_pred ---hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc-ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHH
Q psy10461 1147 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY 1222 (1359)
Q Consensus 1147 ---dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~-~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~ 1222 (1359)
.+...+.+.++.++.-++.-++..+|.+ ....+. .|+..+..+++..++.||...++++..|+.+-+. +..+.
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--~~i~~ 188 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--SGHLT 188 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS--CCCGG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC--HHHHH
Confidence 3566677777766666788888888888 444443 7889999999999999999999998777665543 23445
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1223 AVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1223 ~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
.|+--+.+++..+|..++..|..++..+.
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 55666667888889999988888887763
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.77 E-value=0.00032 Score=81.61 Aligned_cols=306 Identities=11% Similarity=0.091 Sum_probs=152.4
Q ss_pred HHHHHhhhcCCC--CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccc
Q psy10461 904 IINRVVDDLKDE--NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRV 980 (1359)
Q Consensus 904 iI~~Ll~~LKDe--s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~i 980 (1359)
+++. ...+.+. ++.-++.++.++-.+.. .| +.........++-.++-+++....+. ..+.-.+..++.. .
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~-~G-~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~--- 99 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLIN-QG-EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A--- 99 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHH-HT-CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S---
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHH-CC-CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H---
Confidence 4554 3556655 44444556666655444 56 32332222345555566788766555 3333233333332 1
Q ss_pred ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhC
Q psy10461 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1060 (1359)
Q Consensus 981 kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG 1060 (1359)
+-+--+++.|..=++|+++.+|--|..++++|. .+.++..+.+.+.+.|.|..|-|+++++-+...+....
T Consensus 100 -~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~-------~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~- 170 (355)
T 3tjz_B 100 -EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT-------DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS- 170 (355)
T ss_dssp -SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC-------CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-
T ss_pred -HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-
Confidence 122256788888899999999999999999884 24677788899999999999999997554444333221
Q ss_pred CCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHH
Q psy10461 1061 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAI--RRATVNTFGY 1138 (1359)
Q Consensus 1061 ~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sV--R~AAv~tLg~ 1138 (1359)
....+.++..+..++.|+++.|..+++.++..|..... ..+.++ ++-|... .+ -.+-+..+..
T Consensus 171 ----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-----~a~~kL----v~~l~~~--~l~~~~~q~~llr~ 235 (355)
T 3tjz_B 171 ----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-----LAVSKM----ISKFTRH--GLKSPFAYCMMIRV 235 (355)
T ss_dssp ----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-----HHHHHH----HHHHHSS--CCSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-----HHHHHH----HHHHhcC--CCcChHHHHHHHHH
Confidence 11245677888888999999999988888888865321 111122 2222221 00 0111222222
Q ss_pred HHHHhCc-------hhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcCCCCchhHHHHHHHHHH
Q psy10461 1139 IAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGVLKALSF 1208 (1359)
Q Consensus 1139 IAk~~Gp-------edVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLkDpE~nVR~~VlkaLs~ 1208 (1359)
+++ +++ +.++..|.+.|++.+..|-+.++.+|-.+.. +... ..+..|...|..+++|+|+.++..|..
T Consensus 236 l~~-~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 236 ASR-QLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNK 313 (355)
T ss_dssp HTC-C-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred HHH-hccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 222 222 2344455555666665666666666655544 2111 234445555668889999999999988
Q ss_pred HHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHH
Q psy10461 1209 LFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT 1246 (1359)
Q Consensus 1209 Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~sa 1246 (1359)
+...-.... ...-.-+++++.|.|+..+..|..+
T Consensus 314 l~~~~P~~v----~~~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 314 VAMKHPSAV----TACNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp --------------------------------------
T ss_pred HHHHCcHHH----HHHHHHHHHHccCCcHhHHHHHHHH
Confidence 877654322 2333456668889997777655543
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.75 E-value=2.1e-06 Score=84.66 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=89.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCC
Q psy10461 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195 (1359)
Q Consensus 1116 eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE 1195 (1359)
.++.+|+|....||..|+..|+.++ ... ++.|+..|++.+..+|..++.+++.++. ...++.|+..|+|++
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~----~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----~~a~~~L~~~L~d~~ 86 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMG----DEA-FEPLLESLSNEDWRIRGAAAWIIGNFQD----ERAVEPLIKLLEDDS 86 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCS----STT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----HHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhC----chH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHcCCC
Confidence 3457788888899999999988654 334 4888899998888899998888887753 357999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHH
Q psy10461 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIK 1248 (1359)
Q Consensus 1196 ~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk 1248 (1359)
+.||..++++|+.+. . ...+|.|..++.|.|..||..|+.++.
T Consensus 87 ~~VR~~A~~aL~~~~----~------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 87 GFVRSGAARSLEQIG----G------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp THHHHHHHHHHHHHC----S------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhC----c------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999987653 2 356788888999999999988776654
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.69 E-value=0.00037 Score=81.12 Aligned_cols=273 Identities=9% Similarity=0.000 Sum_probs=139.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccccccc
Q psy10461 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVKP 982 (1359)
Q Consensus 904 iI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ikP 982 (1359)
+...++..+...+...|+++--.+..++.. ..+.+ ...+.|.--+++.+.-. ..++++++.+. ...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~------~~~ 135 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQIT------DST 135 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHC------CTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCC------CHH
Confidence 455566788899999999999999887775 33321 22344444455544322 44555555542 234
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCC
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~ 1062 (1359)
.+..|.+.+...+.|.++.||.+|+-++.++.+... +++...+.-+.+.+.|.++-|..+++.++..+...-
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--- 207 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--- 207 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---
Confidence 578899999999999999999999999887765433 456667778888888889989888878777776421
Q ss_pred CCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy10461 1063 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1063 ~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~ 1142 (1359)
+..+..++.-+....-+-..+.+.+|..++..+.+..+. +-.+++.-+.++|+....+|--.|++++-.|...
T Consensus 208 ------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 208 ------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 112333333232211000222334444444444432111 1122444445678877889999999999887652
Q ss_pred hCchhH---HHHHHHhhhcccchhHHHHHHHHHHHhhhcCcc---ccHHHHHHhcCCCCchhHHHHHHHH
Q psy10461 1143 IGPHDV---LATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGVLKAL 1206 (1359)
Q Consensus 1143 ~GpedV---lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~---~VLPaLLnlLkDpE~nVR~~VlkaL 1206 (1359)
+...+ ...|.-.+.+.++.+|+.+...+..|+... |. ..-.-+.+++.|+.+.+..-++.+|
T Consensus 281 -~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~-P~~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 281 -SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH-PSAVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred -CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 22221 112333355677789999888877776543 22 3455678889999999887777665
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.60 E-value=0.00021 Score=85.97 Aligned_cols=241 Identities=12% Similarity=0.103 Sum_probs=159.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-C--C---CchhhHHHHHHHHHH-H----HHHHhh-HHHHHHHHHHHHHH
Q psy10461 1071 LLPRLTPILKNRHEKVQENCIDLVGRIADR-G--P---EYVSAREWMRICFEL-L----ELLKAH-KKAIRRATVNTFGY 1138 (1359)
Q Consensus 1071 lLP~L~~LLkDr~~rVR~AAielIg~IA~~-g--~---e~v~~kE~mrIc~eL-L----elLkD~-~~sVR~AAv~tLg~ 1138 (1359)
+.-.+..-|-|..|.+|-.|+-.|..|... | . ...+..-..|+|-.| | +...|. ..=||+.|+.+||.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 666666666799999999999999988652 2 1 112222133433211 1 113343 55699999999999
Q ss_pred HHHHhCch-hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc-cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhh
Q psy10461 1139 IAKAIGPH-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM 1216 (1359)
Q Consensus 1139 IAk~~Gpe-dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP-~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~ 1216 (1359)
+ ...+++ .++..++..+....|.+|-+...++-.+.+.+.. ..|+++++..|+|++-+||..++.+|.-++
T Consensus 255 L-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA------ 327 (800)
T 3oc3_A 255 I-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP------ 327 (800)
T ss_dssp H-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC------
T ss_pred H-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc------
Confidence 9 766654 5566666666777889999988888888555542 378999999999999999999999986666
Q ss_pred chhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhh--cCCCchhHHhhhHHhhhcccccCChHHHHHHHHHHHHHHH
Q psy10461 1217 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV--YGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 1294 (1359)
Q Consensus 1217 ~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~--~glG~EdaliHlLnlvlPnI~Etsp~Vi~~ileaLeaLr~ 1294 (1359)
..+.+..++-.+=+.|.|-|. .-.+..+++.-||-.| +.....+ ..+++.+||.+.-+.+.||.+++.++..+.
T Consensus 328 ~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~~a~~d--p~LVPRL~PFLRHtITSVR~AVL~TL~tfL- 403 (800)
T 3oc3_A 328 ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPELSIP--PERLKDIFPCFTSPVPEVRTSILNMVKNLS- 403 (800)
T ss_dssp CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCTTCCCC--SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-
T ss_pred chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCcccccC--hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-
Confidence 234566777777777665431 1111112222222111 1111112 278999999998899999999999996654
Q ss_pred hhchHHHHHhHhhhhc-cccccchhhHHHHHH
Q psy10461 1295 ALGPVRILQYVLQGLF-HPARKVRDVYWKIYN 1325 (1359)
Q Consensus 1295 aLG~~~ll~~vLpgLf-hpA~kvrd~~WRvyn 1325 (1359)
.+.++..+.|.+. +.-..+++.--+++.
T Consensus 404 ---~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 ---EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ---CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5667778887765 665556665555553
No 101
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.57 E-value=0.0027 Score=69.67 Aligned_cols=189 Identities=12% Similarity=0.160 Sum_probs=143.4
Q ss_pred ChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhccc
Q psy10461 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGK 978 (1359)
Q Consensus 900 g~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~ 978 (1359)
..++.+..|+..|.|+++.++..|+..|.++.+..+. .........+++.++-++.+..... =-++++++.++++.+-
T Consensus 30 ~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~-~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 30 EDKRALFLILELAGEDDETTRLRAFVALGEILKRADS-DLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 3456889999999999999999999999999996543 2444445567777777665432222 2345678888877653
Q ss_pred ccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy10461 979 RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV 1058 (1359)
Q Consensus 979 ~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~v 1058 (1359)
. ..-+..+...+..+.+..+...+..||+.++.+ .+.. ....+...+++.+...++++-...+.+|-.++..
T Consensus 109 ~-~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 109 G-SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE------DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp C-HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred C-HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 2 234578889999999999999999999999999 4333 2344666777777777888888888888888776
Q ss_pred hCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q psy10461 1059 IGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1100 (1359)
Q Consensus 1059 lG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~ 1100 (1359)
-+.. ..+.+++..+..++++.++-+++-+++.+..|...
T Consensus 181 S~D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 181 SADS---GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CSSC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred cCCH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5432 23678888889999999999999999999999874
No 102
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.53 E-value=3.6e-05 Score=85.18 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=120.7
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHH-HHHHHHHHHHhhcccccccchHhHH
Q psy10461 910 DDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDV-VMLNGFGTIVNQLGKRVKPYLPQIC 988 (1359)
Q Consensus 910 ~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~-v~lkaLg~Lae~Lg~~ikPyl~qIL 988 (1359)
..++|+++.||..|+.. +++. .|..+++|.+..+. .+. ..++.
T Consensus 57 ~ll~d~~~~VR~~AA~~-------l~~~------------~l~~L~~D~~~~VR~~aA-------~~L~~---------- 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRY-------SPVE------------ALTPLIRDSDEVVRRAVA-------YRLPR---------- 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTT-------SCGG------------GGGGGTTCSSHHHHHHHH-------TTSCS----------
T ss_pred HHhcCCCHHHHHHHHHh-------CCHH------------HHHHHccCcCHHHHHHHH-------HHCCH----------
Confidence 34589999999999984 3333 23445566555542 222 22331
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCCch
Q psy10461 989 GTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPI 1068 (1359)
Q Consensus 989 piIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l 1068 (1359)
+.+..+++|+++.||..++..+ . .. .|...+.|.+++|+..+... ++ +
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l-------~----~~-------~L~~L~~D~d~~VR~~aA~~-------l~-----~-- 148 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL-------P----LE-------QLEQMAADRDYLVRAYVVQR-------IP-----P-- 148 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS-------C----TG-------GGGGGTTCSSHHHHHHHHHH-------SC-----G--
T ss_pred HHHHHHHcCCCHHHHHHHHHhC-------C----HH-------HHHHHHcCCCHHHHHHHHHh-------cC-----H--
Confidence 3467789999999999999843 1 11 12233678888888877542 21 1
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhH
Q psy10461 1069 KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 1148 (1359)
Q Consensus 1069 ~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedV 1148 (1359)
+ .+..+++|.+|.||.+++..++ . . + +..+++|..+.||.+++..+ +.
T Consensus 149 -~---~l~~l~~D~d~~VR~~aa~~l~------~-----~----l---l~~ll~D~d~~VR~aaa~~l-------~~--- 196 (244)
T 1lrv_A 149 -G---RLFRFMRDEDRQVRKLVAKRLP------E-----E----S---LGLMTQDPEPEVRRIVASRL-------RG--- 196 (244)
T ss_dssp -G---GGGGTTTCSCHHHHHHHHHHSC------G-----G----G---GGGSTTCSSHHHHHHHHHHC-------CG---
T ss_pred -H---HHHHHHcCCCHHHHHHHHHcCC------H-----H----H---HHHHHcCCCHHHHHHHHHhC-------CH---
Confidence 1 2334678999999999987521 1 0 1 12467899999999998763 22
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHH
Q psy10461 1149 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSF 1208 (1359)
Q Consensus 1149 lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~ 1208 (1359)
+.|+..++..+++||..++.+++ ++.|..+ +|++..||..+..+|++
T Consensus 197 -~~L~~Ll~D~d~~VR~~aa~~l~-----------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 197 -DDLLELLHDPDWTVRLAAVEHAS-----------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp -GGGGGGGGCSSHHHHHHHHHHSC-----------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred -HHHHHHHcCCCHHHHHHHHHcCC-----------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 23555567888899999777754 3555555 99999999988776643
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.45 E-value=3.2e-05 Score=85.60 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=108.1
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHH-HHHHHHHHHHhhcccccccchHh
Q psy10461 908 VVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDV-VMLNGFGTIVNQLGKRVKPYLPQ 986 (1359)
Q Consensus 908 Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~-v~lkaLg~Lae~Lg~~ikPyl~q 986 (1359)
|...++|+++.||.+|+.. +++. .|..++.|...++. .+.. .++.
T Consensus 79 l~~L~~D~~~~VR~~aA~~-------L~~~------------~L~~ll~D~d~~VR~~aA~-------~l~~-------- 124 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYR-------LPRE------------QLSALMFDEDREVRITVAD-------RLPL-------- 124 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTT-------SCSG------------GGGGTTTCSCHHHHHHHHH-------HSCT--------
T ss_pred HHHHccCcCHHHHHHHHHH-------CCHH------------HHHHHHcCCCHHHHHHHHH-------hCCH--------
Confidence 5667899999999999974 4433 24455666655552 2222 2221
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCCC
Q psy10461 987 ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 1066 (1359)
Q Consensus 987 ILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~lsp 1066 (1359)
..+..+++|+++.||..+|..+ . .. .+...+.|.+++|+.+++++ ++
T Consensus 125 --~~L~~L~~D~d~~VR~~aA~~l-------~----~~-------~l~~l~~D~d~~VR~~aa~~-------l~------ 171 (244)
T 1lrv_A 125 --EQLEQMAADRDYLVRAYVVQRI-------P----PG-------RLFRFMRDEDRQVRKLVAKR-------LP------ 171 (244)
T ss_dssp --GGGGGGTTCSSHHHHHHHHHHS-------C----GG-------GGGGTTTCSCHHHHHHHHHH-------SC------
T ss_pred --HHHHHHHcCCCHHHHHHHHHhc-------C----HH-------HHHHHHcCCCHHHHHHHHHc-------CC------
Confidence 2356788999999999999832 1 11 12344678899999988664 21
Q ss_pred chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1067 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1067 ~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
.++ +..+++|.+|.||.+++..+ .. ..+..+++|..+.||.+++.+++
T Consensus 172 --~~l---l~~ll~D~d~~VR~aaa~~l------~~------------~~L~~Ll~D~d~~VR~~aa~~l~--------- 219 (244)
T 1lrv_A 172 --EES---LGLMTQDPEPEVRRIVASRL------RG------------DDLLELLHDPDWTVRLAAVEHAS--------- 219 (244)
T ss_dssp --GGG---GGGSTTCSSHHHHHHHHHHC------CG------------GGGGGGGGCSSHHHHHHHHHHSC---------
T ss_pred --HHH---HHHHHcCCCHHHHHHHHHhC------CH------------HHHHHHHcCCCHHHHHHHHHcCC---------
Confidence 122 22467899999999999763 11 11246789999999999999876
Q ss_pred hHHHHHHHhhhcccchhHHHHHHHHH
Q psy10461 1147 DVLATLLNNLKVQERQNRVCTTVAIA 1172 (1359)
Q Consensus 1147 dVlp~LL~~Lk~qe~~VRv~ta~AIg 1172 (1359)
.+ +|..|+..+++||..++.++|
T Consensus 220 --~~-~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 --LE-ALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp --HH-HHHHCCCCCHHHHHHHHCCC-
T ss_pred --HH-HHHHccCCCHHHHHHHHHHhC
Confidence 12 344456667889998776554
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.43 E-value=0.00026 Score=77.86 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=101.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhh-cccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCc
Q psy10461 1118 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL 1196 (1359)
Q Consensus 1118 LelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk-~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~ 1196 (1359)
..+.++.+++||-.|+..|+.+ . ...++++.|.+.+. ...+.||.+++.+|+.++...+|+.+++.+..-++|++.
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~ 153 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNL 153 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCH
Confidence 3455677899999999998887 3 33567777666343 445679999999999999988999899999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHh
Q psy10461 1197 NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1197 nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl 1252 (1359)
+||..++..+...+.. ...+.....++|+|+.+..|++..||.+.+..|..++-
T Consensus 154 ~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 154 HTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp HHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 9998777765322221 22333446799999999999999999988889988873
No 105
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.37 E-value=0.051 Score=72.41 Aligned_cols=370 Identities=10% Similarity=0.077 Sum_probs=192.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhhccc--ccccchHhH----HH
Q psy10461 916 NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGK--RVKPYLPQI----CG 989 (1359)
Q Consensus 916 s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD~v~lkaLg~Lae~Lg~--~ikPyl~qI----Lp 989 (1359)
+..++..+++++.....-.+...+.+. ...+++.+..++.+... ...++.+|..++..-.. ...+++..+ +.
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~-~~~ll~~l~~~l~~~~l-r~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~ 297 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSMSHITAE-NCKLLEILCLLLNEQEL-QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH 297 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHTT-TSHHHHHHHHGGGCTTT-HHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCHHHHHhc-cchHHHHHHHHcCCHHH-HHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence 456777888887765554443211110 00245544444443211 15667777777764321 001111111 11
Q ss_pred HHHHhh--------cCCCHHHHHHHHHHHHHHHHHhhhhh-------HHhHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Q psy10461 990 TILWRL--------NNKSAKVRQQAADLISRIAVVMKTCQ-------EEKLMGHLGVVLYEYLGEEYPEVLGSILGALKA 1054 (1359)
Q Consensus 990 iIl~LL--------~Des~~VR~aAAe~Is~LA~vl~~~~-------e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~a 1054 (1359)
.+...+ .|.+..+++..++++..++..+..+. ....+..++..+++.+.....++...++.....
T Consensus 298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ 377 (1204)
T 3a6p_A 298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA 377 (1204)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHH
Confidence 222222 33467888999999998886554321 134566778888888766544444444443333
Q ss_pred HHHHhCCCCCCCchhchHHHHHHHh-----c-----CCC---------------------HHHHHHHHHHHHHHHhhCCC
Q psy10461 1055 IVNVIGMTKMTPPIKDLLPRLTPIL-----K-----NRH---------------------EKVQENCIDLVGRIADRGPE 1103 (1359)
Q Consensus 1055 Ia~vlG~~~lsp~l~~lLP~L~~LL-----k-----Dr~---------------------~rVR~AAielIg~IA~~g~e 1103 (1359)
+.+..... ..+...++++.|++++ + +.. +..|..+.+.+..++...+.
T Consensus 378 ll~~~~~~-~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~ 456 (1204)
T 3a6p_A 378 LFRHEILS-RDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK 456 (1204)
T ss_dssp HHSCTTTT-TCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhccccc-ccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33322111 1122445666666543 1 110 23566666666666653321
Q ss_pred chhhHHHHHHHHHHH-HHHH-------------------------hhHHHHHHHHHHHHHHHHHHh---C--c---hhHH
Q psy10461 1104 YVSAREWMRICFELL-ELLK-------------------------AHKKAIRRATVNTFGYIAKAI---G--P---HDVL 1149 (1359)
Q Consensus 1104 ~v~~kE~mrIc~eLL-elLk-------------------------D~~~sVR~AAv~tLg~IAk~~---G--p---edVl 1149 (1359)
. ....|...+ ..+. +..+...++....++.+++.+ . + ..+.
T Consensus 457 ~-----~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~ 531 (1204)
T 3a6p_A 457 T-----SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDG 531 (1204)
T ss_dssp H-----HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHH
T ss_pred H-----HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHH
Confidence 1 111221111 1111 112334566666666666554 1 1 1356
Q ss_pred HHHHHhhh---cccchhHHHHHHHHHHHhhhcC--cc---ccHHHHHHhcCC------------CCchhHHHHHHHHHHH
Q psy10461 1150 ATLLNNLK---VQERQNRVCTTVAIAIVAETCS--PF---TVLPALMNEYRV------------PELNVQNGVLKALSFL 1209 (1359)
Q Consensus 1150 p~LL~~Lk---~qe~~VRv~ta~AIg~LAea~g--P~---~VLPaLLnlLkD------------pE~nVR~~VlkaLs~I 1209 (1359)
+.|++.+- -.+..+|......|+.+++-+. |. .||..|+..+.+ ...+||..+|.++..+
T Consensus 532 ~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 532 IELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 66766632 2355688888888988887663 33 455555555544 2347999999999999
Q ss_pred HHHhhhhchhhHHhHHHHHHHHHhccC---hHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhccccc--CChHHHHH
Q psy10461 1210 FEYIGEMGKDYIYAVTPLLEDALMDRD---LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE--TSPHLVQA 1284 (1359)
Q Consensus 1210 ae~IG~~~kdYL~~VlPlLedaL~D~D---~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~E--tsp~Vi~~ 1284 (1359)
++.++....+|+..+...+..++.... ..=+.....++..+| ..++-+.....+|..+++.+.+ .++++..
T Consensus 612 ~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia---~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~- 687 (1204)
T 3a6p_A 612 CRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS---NQFKNYERQKVFLEELMAPVASIWLSQDMHR- 687 (1204)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHHSCHHHHH-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHccHHHHH-
Confidence 999998888899999998888775433 222233334444443 2233344445555656654443 4444442
Q ss_pred HHHHHHHHHHhhc
Q psy10461 1285 FMDAVEGLRVALG 1297 (1359)
Q Consensus 1285 ileaLeaLr~aLG 1297 (1359)
.+.....++..+|
T Consensus 688 ~~s~~~~f~~~~G 700 (1204)
T 3a6p_A 688 VLSDVDAFIAYVG 700 (1204)
T ss_dssp HHHCHHHHHHHHT
T ss_pred hhcCHHHHHHHhC
Confidence 3333344444444
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.13 E-value=0.0029 Score=69.59 Aligned_cols=137 Identities=14% Similarity=0.082 Sum_probs=100.7
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhCch
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE-LLKAHKKAIRRATVNTFGYIAKAIGPH 1146 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLe-lLkD~~~sVR~AAv~tLg~IAk~~Gpe 1146 (1359)
..++++....+.++....||..++.+|+.+ . . ... ++..+.+ +-.|..+.||+.+..+|+.++...+++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~----~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K----DKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T----SHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C----cHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 346666667788899999999999988876 2 1 111 2222334 345678999999999999999877888
Q ss_pred hHHHHHHHhhhcccchhHHHHHHHHHHHhh----hcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhh
Q psy10461 1147 DVLATLLNNLKVQERQNRVCTTVAIAIVAE----TCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 1214 (1359)
Q Consensus 1147 dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAe----a~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG 1214 (1359)
..++.+..-.++++..||.+++...-.-+. ...|..++|.|-++..|++..||..|..+|..+.+.-.
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 877877777778888898886655322121 12345789999999999999999999999988776544
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.67 E-value=0.34 Score=60.21 Aligned_cols=322 Identities=13% Similarity=0.162 Sum_probs=165.9
Q ss_pred cccChHhHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH---HHHHHHHHHH
Q psy10461 897 RLVGASEIINRVVDDLKDE-NEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED---VVMLNGFGTI 972 (1359)
Q Consensus 897 ~klg~~eiI~~Ll~~LKDe-s~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD---~v~lkaLg~L 972 (1359)
.+-.+++.|..|++.+.+. -..=|+.|+..|..+++....+ +...-+..|+..|++...++ ++++..+-.+
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-----Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l 89 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-----VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI 89 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-----HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-----hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4557788899999988866 4577999999999988754433 33345677777776554332 3333333222
Q ss_pred HhhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy10461 973 VNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGAL 1052 (1359)
Q Consensus 973 ae~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL 1052 (1359)
...-+.. .. ...-..+..++-..+++.+-+. ..-+..|+..|.+.+-.++...+..|
T Consensus 90 ~~~~~~~-~~----------------~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL 146 (651)
T 3grl_A 90 ISNDEEE-EV----------------EENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLL 146 (651)
T ss_dssp HCCC-------------------------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hCCCCcc-cc----------------cccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHH
Confidence 2111100 00 0000111112222233333211 12566778888777778888888888
Q ss_pred HHHHHHhCCCCCCCc---hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHH-HHHHHHHHHHHHhhHH--
Q psy10461 1053 KAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREW-MRICFELLELLKAHKK-- 1126 (1359)
Q Consensus 1053 ~aIa~vlG~~~lsp~---l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~-mrIc~eLLelLkD~~~-- 1126 (1359)
..++..-+.+ .... ...=+|+|+.+|.|.+..+|-.++-+|..++.... .+.+.=. ......|+.+++....
T Consensus 147 ~~L~~~r~~~-~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~-~iQklVAFEnaFe~Lf~Ii~~Eg~~~ 224 (651)
T 3grl_A 147 TSLLKQLGPQ-VQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG-AIQKIVAFENAFERLLDIITEEGNSD 224 (651)
T ss_dssp HHHHHHSHHH-HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHHTGGG
T ss_pred HHHHhcCcHH-HHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH-HHHHHHHHhccHHHHHHHHHhcCCCc
Confidence 8887552211 0000 11457888999999999999999999999987433 2211100 0122233455544322
Q ss_pred --HHHHHHHHHHHHHHHHhCc--hh------HHHHHHHhhhccc----ch-hHHH-HHHHHHHHhhhcCc----------
Q psy10461 1127 --AIRRATVNTFGYIAKAIGP--HD------VLATLLNNLKVQE----RQ-NRVC-TTVAIAIVAETCSP---------- 1180 (1359)
Q Consensus 1127 --sVR~AAv~tLg~IAk~~Gp--ed------Vlp~LL~~Lk~qe----~~-VRv~-ta~AIg~LAea~gP---------- 1180 (1359)
.|=.-|...+..|.+. ++ |. .++.|.+.|+..+ |. -|+. ...++..|.--|.|
T Consensus 225 Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~n 303 (651)
T 3grl_A 225 GGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSC 303 (651)
T ss_dssp SHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 2323334444444443 32 22 2334455554322 11 1222 11222222222211
Q ss_pred ------cccHHHHHHhcCCCC--chhHHHHHHHHHHHHHHhhh-hchhhH-----------HhHHHHHHHHHhcc-ChHH
Q psy10461 1181 ------FTVLPALMNEYRVPE--LNVQNGVLKALSFLFEYIGE-MGKDYI-----------YAVTPLLEDALMDR-DLVH 1239 (1359)
Q Consensus 1181 ------~~VLPaLLnlLkDpE--~nVR~~VlkaLs~Iae~IG~-~~kdYL-----------~~VlPlLedaL~D~-D~~V 1239 (1359)
..++..|++++..+. ..|+..++.+++.+.. |. ..++++ ..++.+|..++.+. ..++
T Consensus 304 Q~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir--gN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~l 381 (651)
T 3grl_A 304 QKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR--GCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVL 381 (651)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHH
Confidence 168889999988653 4477777777655432 21 123333 23444555545443 4688
Q ss_pred HHHHHHHHHHHH
Q psy10461 1240 RQTACATIKHMA 1251 (1359)
Q Consensus 1240 RqtA~saIk~LA 1251 (1359)
|.+|+..++..-
T Consensus 382 R~Aa~~cl~ay~ 393 (651)
T 3grl_A 382 RCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777653
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.99 E-value=1.2 Score=53.74 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhCchhHHH----HHHHhhhcc-----cchhHHHHHHHHHHHhhhcCc-c---ccHHHHHHhcC--
Q psy10461 1128 IRRATVNTFGYIAKAIGPHDVLA----TLLNNLKVQ-----ERQNRVCTTVAIAIVAETCSP-F---TVLPALMNEYR-- 1192 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~GpedVlp----~LL~~Lk~q-----e~~VRv~ta~AIg~LAea~gP-~---~VLPaLLnlLk-- 1192 (1359)
+..++-.++..++.......++. .+++.+..- +...++-...+++.++..||. + ..|+.+.+.|.
T Consensus 241 lI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~y 320 (507)
T 3u0r_A 241 LLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEY 320 (507)
T ss_dssp HHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence 33444444555554444333333 345544421 112466677888999999983 2 57888887774
Q ss_pred ---------------CCCchhHHHHHHHHHHHHHHhhhhchhhH
Q psy10461 1193 ---------------VPELNVQNGVLKALSFLFEYIGEMGKDYI 1221 (1359)
Q Consensus 1193 ---------------DpE~nVR~~VlkaLs~Iae~IG~~~kdYL 1221 (1359)
+.+++.++.-+.||-+.|..++....+|+
T Consensus 321 mP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 321 MPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp SCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred CCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 13366789999999999999987666555
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.80 E-value=1.4 Score=53.13 Aligned_cols=238 Identities=13% Similarity=0.078 Sum_probs=119.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Q psy10461 1074 RLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLL 1153 (1359)
Q Consensus 1074 ~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL 1153 (1359)
+++.+|.|....||.++|..|+.|+.- ++ +.++.+.|..+|......-+..+-++|-.|-+. .+...+..|+
T Consensus 69 a~lDLcEDed~~IR~qaik~Lp~~ck~--~~-----i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~-Dpk~tl~~lf 140 (507)
T 3u0r_A 69 AQLDLCEDEDVSIRRQAIKELPQFATG--EN-----LPRVADILTQLLQTDDSAEFNLVNNALLSIFKM-DAKGTLGGLF 140 (507)
T ss_dssp HHHHHHTCSSHHHHHHHHHHGGGGCCT--TC-----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHhhHHHhhh--hh-----hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 345567788888888888888887653 22 445777777888766666666666777666665 5555555555
Q ss_pred HhhhcccchhHHHHHHHHHHHhhhcCc-----c---ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHH
Q psy10461 1154 NNLKVQERQNRVCTTVAIAIVAETCSP-----F---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 1225 (1359)
Q Consensus 1154 ~~Lk~qe~~VRv~ta~AIg~LAea~gP-----~---~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~Vl 1225 (1359)
..+...+..+|.-+...|..-...+++ + .|+-.+.+.|+| +....+..+-.|-.-.+..+. ..-...++
T Consensus 141 ~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D-VT~~EF~L~m~lL~~lkl~~t--~~g~qeLv 217 (507)
T 3u0r_A 141 SQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED-VTGEEFVLFMKILSGLKSLQT--VSGRQQLV 217 (507)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHTSGGGSS--HHHHHHHH
T ss_pred HHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhcccccC--chHHHHHH
Confidence 554444556676544444332222222 1 344555555543 222222222221000000000 00013455
Q ss_pred HHHHHHHh-c-----cC-hHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCCh-----HHHHHHHHHHHHHH
Q psy10461 1226 PLLEDALM-D-----RD-LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSP-----HLVQAFMDAVEGLR 1293 (1359)
Q Consensus 1226 PlLedaL~-D-----~D-~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp-----~Vi~~ileaLeaLr 1293 (1359)
.++.+-.. | .| ..+.+...-+-.++.+-..+.....-+..+...|+|.+-+-.. +.+..++..+..++
T Consensus 218 ~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s 297 (507)
T 3u0r_A 218 ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMS 297 (507)
T ss_dssp HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHc
Confidence 55554311 1 12 2233322213333433333333334444556667776655322 36777888887776
Q ss_pred HhhchHHHHHhHhhhhccccccchhhHHHHHHhhhhccccchhhccccccc
Q psy10461 1294 VALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQN 1344 (1359)
Q Consensus 1294 ~aLG~~~ll~~vLpgLfhpA~kvrd~~WRvyn~~y~~~~~Alv~~~P~l~~ 1344 (1359)
...|.. .+.+...--|| +-|..|+|....
T Consensus 298 ~~~~~~--------------e~a~~~l~~iy--------~~L~~ymP~~p~ 326 (507)
T 3u0r_A 298 SFCGDM--------------EKLETNLRKLF--------DKLLEYMPLPPE 326 (507)
T ss_dssp TTCCCC--------------TTHHHHHHHHH--------HHHHTTSCCCC-
T ss_pred cCCCcc--------------chHHHHHHHHH--------HHHHHHCCCCcc
Confidence 665522 22223333466 667778886654
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.37 E-value=0.7 Score=54.35 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=83.7
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh---
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI--- 1059 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl--- 1059 (1359)
.++++++.|+.+..|.+..||+..+++|...+.. ..+++..++..|...|.|+++.|++.++.++..++..+
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888899999999999999999888752 24667888888888899999999999888888887542
Q ss_pred --CCCCCC-------CchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1060 --GMTKMT-------PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1060 --G~~~ls-------p~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
.....+ ..+..+.-.|+.++.+.+..||-.|+.++..+..
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 001000 0122344444556778889999999999999765
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.19 E-value=0.19 Score=55.13 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=73.2
Q ss_pred HHHHHHhhhcccc--hhHHHHHHHHHHHhhhcCc-------cccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchh
Q psy10461 1149 LATLLNNLKVQER--QNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKD 1219 (1359)
Q Consensus 1149 lp~LL~~Lk~qe~--~VRv~ta~AIg~LAea~gP-------~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kd 1219 (1359)
++.++..|++.+. +++.+++.++..++..-.+ ...+|.|+.+|+.+..+||..++++|..++..- ...+.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHH
Confidence 5666777776655 5666666666666533211 257899999999999999999999998886421 12233
Q ss_pred hH--HhHHHHHHHHHhc-cChHHHHHHHHHHHHHHh
Q psy10461 1220 YI--YAVTPLLEDALMD-RDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1220 YL--~~VlPlLedaL~D-~D~~VRqtA~saIk~LAl 1252 (1359)
.+ .-.+|.|.++|.. .+..++..|+.++-.|+.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 33 3467888888874 688899888889999874
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.08 E-value=1.7 Score=48.38 Aligned_cols=112 Identities=13% Similarity=0.239 Sum_probs=62.0
Q ss_pred chHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh---
Q psy10461 983 YLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI--- 1059 (1359)
Q Consensus 983 yl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vl--- 1059 (1359)
+++++++.++.+..|.+..||+..+++|...+.. +.+++...+..|...|.|+++.|++.++.++..++..+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-----k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-----KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666666655555411 13445555555555555555666655555555554442
Q ss_pred --CCCCCCC-------chhchHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q psy10461 1060 --GMTKMTP-------PIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099 (1359)
Q Consensus 1060 --G~~~lsp-------~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~ 1099 (1359)
.....+. .+..+--.|..++.+.+..||-.|++++..+..
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 0000000 011233444556778899999999999999764
No 113
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.99 E-value=0.12 Score=56.88 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=111.2
Q ss_pred hchHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhCCCchhhHH-HH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy10461 1069 KDLLPRLTPILKNRHE--KVQENCIDLVGRIADRGPEYVSARE-WM--RICFELLELLKAHKKAIRRATVNTFGYIAKAI 1143 (1359)
Q Consensus 1069 ~~lLP~L~~LLkDr~~--rVR~AAielIg~IA~~g~e~v~~kE-~m--rIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~ 1143 (1359)
.--+|.++.+|+..++ .++..++..|..++.... +.+. +. ..+..|+.+|+.....+|+.|+.+|..|+..
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~---~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~- 82 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKS---EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE- 82 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH---HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc---HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-
Confidence 3568999999987766 888888889988876332 1111 11 1345567889888899999999999999862
Q ss_pred Cch--------hHHHHHHHhhhc-ccchhHHHHHHHHHHHhhhcCc-----cccHHHHHHhcCC----------------
Q psy10461 1144 GPH--------DVLATLLNNLKV-QERQNRVCTTVAIAIVAETCSP-----FTVLPALMNEYRV---------------- 1193 (1359)
Q Consensus 1144 Gpe--------dVlp~LL~~Lk~-qe~~VRv~ta~AIg~LAea~gP-----~~VLPaLLnlLkD---------------- 1193 (1359)
.++ ..++.|+..|+. .+..++..++.++-.++....- ..-+|.|+.++-.
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCccccccccccc
Confidence 121 346678888874 4566788777777777643311 1357777776531
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhchh-------hHHhHHHHHHHHHhcc--ChHHHHHHHHHHHHHHh
Q psy10461 1194 PELNVQNGVLKALSFLFEYIGEMGKD-------YIYAVTPLLEDALMDR--DLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1194 pE~nVR~~VlkaLs~Iae~IG~~~kd-------YL~~VlPlLedaL~D~--D~~VRqtA~saIk~LAl 1252 (1359)
.+.+|+.++..+|.-++-. ++..+. .+..++-++.....+. |...+..+..++..|++
T Consensus 163 ~~~~v~~na~~~L~nLss~-~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSA-GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTS-CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 2457998888888666431 111111 2234444444433332 33344445567777763
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.57 E-value=0.17 Score=63.45 Aligned_cols=156 Identities=18% Similarity=0.146 Sum_probs=93.9
Q ss_pred HhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH-HHhcccChHHHHHHHHHHHHHHHHhCCCC
Q psy10461 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLY-EYLGEEYPEVLGSILGALKAIVNVIGMTK 1063 (1359)
Q Consensus 985 ~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLl-e~L~De~pEVl~siL~AL~aIa~vlG~~~ 1063 (1359)
.+|+|+|. .|+..++.+|..||.+|++|+..-. +..--.-.+++..++ ..|.|...+|+..+.++|+.++...|.+.
T Consensus 34 ~~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~-~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLK-DLKSPDAKSRTTAAGAIANIVQDAK-CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcH-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 46777765 4788999999999999999985322 111112223455544 45788899999999999999877654321
Q ss_pred CCC-chhchHHHHHHHhcC-------------CC--------HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHH
Q psy10461 1064 MTP-PIKDLLPRLTPILKN-------------RH--------EKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 1121 (1359)
Q Consensus 1064 lsp-~l~~lLP~L~~LLkD-------------r~--------~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelL 1121 (1359)
... .-.++++.|..+++. .. |.+-.+++.+|..++....+-+....-...+..++..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 100 112355555554321 00 22445566677777764432222111122444555666
Q ss_pred Hhh---HHHHHHHHHHHHHHHHHH
Q psy10461 1122 KAH---KKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1122 kD~---~~sVR~AAv~tLg~IAk~ 1142 (1359)
.+. ..+|+.+|..+|..+++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc
Confidence 443 357999999999988774
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.22 E-value=1.6 Score=57.51 Aligned_cols=270 Identities=14% Similarity=0.168 Sum_probs=147.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCCCCCC
Q psy10461 986 QICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMT 1065 (1359)
Q Consensus 986 qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa~vlG~~~ls 1065 (1359)
++...+..++.+....|...++.....|...+..+..++ |. -+++.+.+ .+..+.-+ ++++..+ |.
T Consensus 289 ~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~lR~~~~e~-L~----~l~~~~~~-~~~~r~~~---lDal~~a-GT---- 354 (1056)
T 1lsh_A 289 EIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGV-LQ----SIWHKLHQ-QKDYRRWI---LDAVPAM-AT---- 354 (1056)
T ss_dssp HHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHH-HH----HHHHHHTT-SHHHHHHH---HHHHHHH-CS----
T ss_pred HHHHHHHHHHhccccccCcchHHHHHHHHHHHhcCCHHH-HH----HHHHHHhc-cHHHHHHH---HHHhHhc-CC----
Confidence 333344444443333344556666666666665443333 11 23333322 23333323 4444433 31
Q ss_pred CchhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHH
Q psy10461 1066 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA----HKKAIRRATVNTFGYIAK 1141 (1359)
Q Consensus 1066 p~l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD----~~~sVR~AAv~tLg~IAk 1141 (1359)
.+-+-.+..+++++.-...+ +++++....... .+..++++.+ .+++++ .+..+|..|+-++|.++.
T Consensus 355 ---~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~---~Pt~e~l~~~---~~l~~~~~~~~~~~l~~ta~La~gslV~ 424 (1056)
T 1lsh_A 355 ---SEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ---QATRESLSYA---RELLNTSFIRNRPILRKTAVLGYGSLVF 424 (1056)
T ss_dssp ---HHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC---CCCHHHHHHH---HHHHTCHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC---CCCHHHHHHH---HHHHhCcccccCHHHHHHHHHHHHHHHH
Confidence 14455555555554433333 444554433221 1334455544 445543 245799999999998887
Q ss_pred HhC------chhHHHHH----HHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCC-----C--CchhHHHHHH
Q psy10461 1142 AIG------PHDVLATL----LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV-----P--ELNVQNGVLK 1204 (1359)
Q Consensus 1142 ~~G------pedVlp~L----L~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkD-----p--E~nVR~~Vlk 1204 (1359)
..- +.+++..+ .+.+...+..-++....|+|.++. | ..++.|+..+.. . ...||..++.
T Consensus 425 k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p-~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ 500 (1056)
T 1lsh_A 425 RYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIM 500 (1056)
T ss_dssp HHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---h-hHHHHHHHhhcCccccccccchHHHHHHHH
Confidence 652 12333333 333444444445666677777664 3 477888887742 1 2347888999
Q ss_pred HHHHHHHHhhhhchhhHHhHHHHHHHHHhcc--ChHHHHHHHHHHHHHHhhhcCCCchhHHhhhHHhhhcccccCChHHH
Q psy10461 1205 ALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLV 1282 (1359)
Q Consensus 1205 aLs~Iae~IG~~~kdYL~~VlPlLedaL~D~--D~~VRqtA~saIk~LAl~~~glG~EdaliHlLnlvlPnI~Etsp~Vi 1282 (1359)
+|..+...-. ..+-+.|..+.+|. +..+|.+|+.++-.- .+. ...+.++...++ .|.+.+|.
T Consensus 501 ALr~~~~~~p-------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~---~~~l~~ia~~l~---~E~~~QV~ 564 (1056)
T 1lsh_A 501 ALRNIAKRDP-------RKVQEIVLPIFLNVAIKSELRIRSCIVFFES---KPS---VALVSMVAVRLR---REPNLQVA 564 (1056)
T ss_dssp TTTTGGGTCH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCC---HHHHHHHHHHHT---TCSCHHHH
T ss_pred HHHHhhhhch-------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcC---HHHHHHHHHHHh---hCchHHHH
Confidence 9866653211 24666666677554 678888777655331 122 234455554454 46899999
Q ss_pred HHHHHHHHHHHHhhchH
Q psy10461 1283 QAFMDAVEGLRVALGPV 1299 (1359)
Q Consensus 1283 ~~ileaLeaLr~aLG~~ 1299 (1359)
..+...|.+++..-.|.
T Consensus 565 sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 565 SFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 99999999998887764
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.16 E-value=1.4 Score=57.96 Aligned_cols=174 Identities=15% Similarity=0.135 Sum_probs=112.8
Q ss_pred HhHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhh----hhhHHhHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy10461 985 PQICGTILWRLNN----KSAKVRQQAADLISRIAVVMK----TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIV 1056 (1359)
Q Consensus 985 ~qILpiIl~LL~D----es~~VR~aAAe~Is~LA~vl~----~~~e~~lL~~Ll~iLle~L~De~pEVl~siL~AL~aIa 1056 (1359)
.+++..+..++++ .++.+|..|.-.++.++.-.- .|. .+.+..+...|.+.+.....+....+|.+|+.+.
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 4455555556654 578899988888888775431 232 3556667777777776555555555666666543
Q ss_pred HHhCCCCCCCchhchHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHh--hHHH
Q psy10461 1057 NVIGMTKMTPPIKDLLPRLTPILK-------NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA--HKKA 1127 (1359)
Q Consensus 1057 ~vlG~~~lsp~l~~lLP~L~~LLk-------Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD--~~~s 1127 (1359)
. ...++.|.+++. +...+||.+|+++|..++..- +.. +-..+++++.| ...+
T Consensus 469 ~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~----p~~----v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 469 Q-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD----PRK----VQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp C-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC----HHH----HHHHHHHHHHCTTSCHH
T ss_pred C-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc----hHH----HHHHHHHHhcCCCCChH
Confidence 2 145666666553 335689999999999987421 111 22334788855 4778
Q ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHhhhc-ccchhHHHHHHHHHHHhhhcCcc
Q psy10461 1128 IRRATVNTFGYIAKAIGPHDVLATLLNNLKV-QERQNRVCTTVAIAIVAETCSPF 1181 (1359)
Q Consensus 1128 VR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~-qe~~VRv~ta~AIg~LAea~gP~ 1181 (1359)
||-+|+..| -+.-++...+..|...+.. .+.+|+--+...|..+++...|.
T Consensus 530 vRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 530 LRIRSCIVF---FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHHH---HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHH---HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 999988765 3333556777778777764 45567777778888888888774
No 117
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=92.44 E-value=0.75 Score=57.26 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=76.2
Q ss_pred ccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH---HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCC-
Q psy10461 1182 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI---YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF- 1257 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL---~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~gl- 1257 (1359)
+-++.|+++|+..+..||..+++.|..++..-+....+++ +.-+|.|.++|.|....+|+-+...|..|+-+-..+
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 5789999999999999999999999999988776555555 367889999999999999998888888876332211
Q ss_pred ---CchhHHhhhHHhhhc-ccccCChHHHHHHHHHHHHH
Q psy10461 1258 ---GCEDALTHLLNYVWP-NIFETSPHLVQAFMDAVEGL 1292 (1359)
Q Consensus 1258 ---G~EdaliHlLnlvlP-nI~Etsp~Vi~~ileaLeaL 1292 (1359)
-+|.+|.-+++++.. ... ...-|...++..+..+
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~-~Ggivv~DCL~ll~nL 239 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNS-DGGIVVEDCLILLQNL 239 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGG-GSHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCC-ccchhHHHHHHHHHHH
Confidence 234445454444442 111 1223444555555444
No 118
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=90.79 E-value=2.4 Score=45.48 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch---hH----HHHHHHHHHHHhhcccccccchHhHHHH
Q psy10461 918 QYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT---ED----VVMLNGFGTIVNQLGKRVKPYLPQICGT 990 (1359)
Q Consensus 918 ~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~---eD----~v~lkaLg~Lae~Lg~~ikPyl~qILpi 990 (1359)
..|..|++.|.. .-|-+ +++..|+.++.++.. .+ ..+++....++.+-.-.+.||+++++|.
T Consensus 23 ~~r~~aL~sL~~---D~gL~--------~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~Lips 91 (196)
T 4atg_A 23 DMKDIAIECLEK---ESGLQ--------QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPS 91 (196)
T ss_dssp TTHHHHHHHHHH---CSSCT--------TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHhc---CCChh--------hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 458887776654 44444 345555544433211 12 4566677777777776789999999999
Q ss_pred HHHhhcC---CCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc
Q psy10461 991 ILWRLNN---KSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE 1039 (1359)
Q Consensus 991 Il~LL~D---es~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~D 1039 (1359)
++..+-. ....+|+-||.+++.|+...+..- ..+-..+...+...+-|
T Consensus 92 vLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 92 LLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcC
Confidence 9887643 122799999999999998776311 34455666666666644
No 119
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=90.20 E-value=14 Score=48.54 Aligned_cols=269 Identities=11% Similarity=0.100 Sum_probs=142.9
Q ss_pred hhcccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhh---HHhHHHHHHHHHHHHhc-ccChHHHHHHH
Q psy10461 974 NQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ---EEKLMGHLGVVLYEYLG-EEYPEVLGSIL 1049 (1359)
Q Consensus 974 e~Lg~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~---e~~lL~~Ll~iLle~L~-De~pEVl~siL 1049 (1359)
.+.|+ ..++.|.+.+..++.|.+-.--+.|||++++|.--.+.+. .+.+-.-+.+.|...|. +-.+|....--
T Consensus 499 rn~~~---~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~ 575 (997)
T 1vsy_5 499 SGFCE---LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWS 575 (997)
T ss_dssp TTTCC---CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHH
T ss_pred cccch---hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH
Confidence 45564 3478899999999999999999999999999854333211 12333445555555555 34454443211
Q ss_pred H-------------------------------------------HHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHH
Q psy10461 1050 G-------------------------------------------ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKV 1086 (1359)
Q Consensus 1050 ~-------------------------------------------AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rV 1086 (1359)
. .|..+...+|-+ +. ....++-.+. +.+....|
T Consensus 576 ~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr-~~-~~~~~l~~~~--l~h~y~~V 651 (997)
T 1vsy_5 576 TLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFR-AP-DVGKLFDELV--FDHPYDQV 651 (997)
T ss_dssp HHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTS-SC-CCHHHHHHCC--SCCSCHHH
T ss_pred HHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccc-cc-cHHHHHHHHH--hCCChHHH
Confidence 1 222222222322 11 1222332222 56777899
Q ss_pred HHHHHHHHHHHHhhC--CCchhhHHHHHHH----------------------HHHHHHHH---h------h-----HHHH
Q psy10461 1087 QENCIDLVGRIADRG--PEYVSAREWMRIC----------------------FELLELLK---A------H-----KKAI 1128 (1359)
Q Consensus 1087 R~AAielIg~IA~~g--~e~v~~kE~mrIc----------------------~eLLelLk---D------~-----~~sV 1128 (1359)
|+++...|..+.... +.+-+..+.+..| .++++-+. + . ...+
T Consensus 652 Re~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~ 731 (997)
T 1vsy_5 652 RQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYF 731 (997)
T ss_dssp HHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHH
Confidence 999999998887643 1111111111111 11111111 1 0 0111
Q ss_pred HHHHHHHHHHHHHHhCch---h--------HHHHHHHhhhcccc-h-hHHHHHHHHHHHhhhcCccccHHHHHHhcC---
Q psy10461 1129 RRATVNTFGYIAKAIGPH---D--------VLATLLNNLKVQER-Q-NRVCTTVAIAIVAETCSPFTVLPALMNEYR--- 1192 (1359)
Q Consensus 1129 R~AAv~tLg~IAk~~Gpe---d--------Vlp~LL~~Lk~qe~-~-VRv~ta~AIg~LAea~gP~~VLPaLLnlLk--- 1192 (1359)
+ .+-..+.-|...++.. . ++|.|+...+..+. . -+.|+..++..++...-+...++.+++.+.
T Consensus 732 ~-~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~ 810 (997)
T 1vsy_5 732 Y-RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSN 810 (997)
T ss_dssp H-HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTT
T ss_pred H-HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 1 1222233444444332 1 22222222222222 2 245445667777655444445565555553
Q ss_pred --CCCchhHHHHHHHH-HHHHHHhhhhchhhHHhHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Q psy10461 1193 --VPELNVQNGVLKAL-SFLFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTACATIKHMA 1251 (1359)
Q Consensus 1193 --DpE~nVR~~VlkaL-s~Iae~IG~~~kdYL~~VlPlLedaL~D~D-~~VRqtA~saIk~LA 1251 (1359)
++.- +|..++.-+ .++|..+-....+-...|.-++..+|.|+. ..||..|+.++..|-
T Consensus 811 ~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll 872 (997)
T 1vsy_5 811 VALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIV 872 (997)
T ss_dssp TTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHH
T ss_pred hcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 3455 899998888 556655533333333467778888899999 999999999998874
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=88.68 E-value=1.4 Score=55.09 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=57.1
Q ss_pred hHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCc------cccHH-HHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchh
Q psy10461 1147 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------FTVLP-ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKD 1219 (1359)
Q Consensus 1147 dVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP------~~VLP-aLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kd 1219 (1359)
.++| +++.|++.+...|.+++.|++.|+..-.. ..+++ .+..+|.|++.+||..++.+|..++..-|....+
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3444 45667777777888888888888742111 14554 4556789999999999999998888766654444
Q ss_pred hH--HhHHHHHHHHH
Q psy10461 1220 YI--YAVTPLLEDAL 1232 (1359)
Q Consensus 1220 YL--~~VlPlLedaL 1232 (1359)
++ ..|+|.|..++
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 43 34666555554
No 121
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.33 E-value=13 Score=44.51 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=125.4
Q ss_pred ccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch--hHHHHHHHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT--EDVVMLNGFGT 971 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~--eD~v~lkaLg~ 971 (1359)
.+|++.=....+-.|+..+..++++-|...-..|.+|-..+..- .+-.+..+-+.|..+.-+.+. +..-++..+|.
T Consensus 153 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~--R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 153 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL--RAYIRKQINNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp TTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTT--HHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 45565555567899999999999999999999999888766443 222333444444444433222 23678889999
Q ss_pred HHhhcccccc-cchHhHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHH
Q psy10461 972 IVNQLGKRVK-PYLPQICGTILWRLNNKSAKV-RQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSIL 1049 (1359)
Q Consensus 972 Lae~Lg~~ik-Pyl~qILpiIl~LL~Des~~V-R~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL 1049 (1359)
++++...-++ .|..-+..+|++|.+.+.-.+ -.+.+.|+..+.+- +..+...++..|+..=--.++.--...+
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-----Dp~L~~~vi~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-----DSTLTEPVVMALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhCCCCCchHHHHHH
Confidence 9998765454 555556677788887654221 22333333333211 0122222222222221111221111233
Q ss_pred HHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH--HHhhCCCchhhHHHHHHHHHHHHHH----Hh
Q psy10461 1050 GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR--IADRGPEYVSAREWMRICFELLELL----KA 1123 (1359)
Q Consensus 1050 ~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~--IA~~g~e~v~~kE~mrIc~eLLelL----kD 1123 (1359)
+-+..+..+++..........++..+...+...|-.|-+.|+..... |...-.+ ....++.+ +++-| +.
T Consensus 306 ~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n~~~IlPi---i~p~L~~~s~~ 380 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--NAAKILPI---MFPSLYRNSKT 380 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--THHHHHHH---HHHHHTSCTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--chhhhHHh---hHHHHHHHHHH
Confidence 44555555443322222233445555555678888887776654432 1110000 00112222 23333 22
Q ss_pred -hHHHHHHHHHHHHHHHHHH
Q psy10461 1124 -HKKAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1124 -~~~sVR~AAv~tLg~IAk~ 1142 (1359)
|+..||..|.+++..+.+.
T Consensus 381 HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CSSTTHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 4778999999999887775
No 122
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=81.22 E-value=22 Score=42.13 Aligned_cols=240 Identities=16% Similarity=0.169 Sum_probs=125.7
Q ss_pred ccccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCc--hhHHHHHHHHHH
Q psy10461 894 KPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT--TEDVVMLNGFGT 971 (1359)
Q Consensus 894 ~LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~--~eD~v~lkaLg~ 971 (1359)
.+|++.=....+-.|+..+..++++=|...-..|.+|-..+... .+-.+..+-+.|..+.-+.+ .+..-++..+|.
T Consensus 120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~--R~~Irk~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL--RAYIRKQINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 34555444556888999999999999999999998887655432 11122233334333333322 233678899999
Q ss_pred HHhhcccccc-cchHhHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccChHHHHHHH
Q psy10461 972 IVNQLGKRVK-PYLPQICGTILWRLNNKSAKV-RQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSIL 1049 (1359)
Q Consensus 972 Lae~Lg~~ik-Pyl~qILpiIl~LL~Des~~V-R~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De~pEVl~siL 1049 (1359)
++++...-++ .|..-+..+|++|-+-+.-.+ -++.+.|+..+.+- +..+...++..|+..=--.++.--...+
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-----Dp~L~~~vi~~LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-----DSTLTEPVVMALLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-----CchhHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 9998876554 565666777888887654322 13344444333211 0122222222222221111222112244
Q ss_pred HHHHHHHHHhCCCCCCCchhchHHHHHHHhcCCCHHHHHHHHHHHHH--HHhhCCCchhhHHHHHHHH-HHHHHHHh-hH
Q psy10461 1050 GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR--IADRGPEYVSAREWMRICF-ELLELLKA-HK 1125 (1359)
Q Consensus 1050 ~AL~aIa~vlG~~~lsp~l~~lLP~L~~LLkDr~~rVR~AAielIg~--IA~~g~e~v~~kE~mrIc~-eLLelLkD-~~ 1125 (1359)
+-+..+...++..........++..+...+...|-.|-+.|+..... |...-.+ ....++.++. .+....+. |+
T Consensus 273 ~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~--n~~~IlPii~p~L~~~~~~HWn 350 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--NAAKILPIMFPSLYRNSKTHWN 350 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--THHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHccC
Confidence 45555555443322222223344455555678888887776654422 1110000 0111222221 11122233 48
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10461 1126 KAIRRATVNTFGYIAKA 1142 (1359)
Q Consensus 1126 ~sVR~AAv~tLg~IAk~ 1142 (1359)
..||..+.+++..+.+.
T Consensus 351 ~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 351 KTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999988775
No 123
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=77.77 E-value=14 Score=39.72 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=87.0
Q ss_pred cccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc--ChHHHHHHHHHHHHH
Q psy10461 978 KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE--YPEVLGSILGALKAI 1055 (1359)
Q Consensus 978 ~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~De--~pEVl~siL~AL~aI 1055 (1359)
+..+-|..+|...+.. ..|.+|.+.+..=. + -.++++.++..+.+..... +.+.+..++....++
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~aL~sL~~D~---g---L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~AL 73 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIAIECLEKES---G---LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSL 73 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHHHHHHHHCS---S---CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHHHHHHhcCC---C---hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3345566666666554 23555554443221 1 1345555555555543221 334455565666666
Q ss_pred HHHhCCCCCCCchhchHHHHHHHh--cC-CCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHH--HHHH
Q psy10461 1056 VNVIGMTKMTPPIKDLLPRLTPIL--KN-RHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK--AIRR 1130 (1359)
Q Consensus 1056 a~vlG~~~lsp~l~~lLP~L~~LL--kD-r~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~--sVR~ 1130 (1359)
...-.. .+.|++-+++|.+...+ +. ....+|.-|+++++.|+.+.....+.. -.|+...++..|.|++. ..+-
T Consensus 74 l~N~~l-~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 74 IKNKHV-FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp HHCTTC-CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTTSCHHHHH
T ss_pred HcCCCC-ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCCCChHHHH
Confidence 554332 36678888888887743 21 112799999999999998543322222 24466556666766533 3344
Q ss_pred HHHHHHHHHHHHhCchhHHHHHHHhhh
Q psy10461 1131 ATVNTFGYIAKAIGPHDVLATLLNNLK 1157 (1359)
Q Consensus 1131 AAv~tLg~IAk~~GpedVlp~LL~~Lk 1157 (1359)
-|+-.|.. +|++.|-..++++++
T Consensus 152 GAi~GL~~----lG~~~vr~~llP~l~ 174 (196)
T 4atg_A 152 GALYCLSI----LSKNVVNTVIREHAE 174 (196)
T ss_dssp HHHHHHHH----HCHHHHHTHHHHHHH
T ss_pred HHHHHHHH----hHHHHHHHhhhcCHH
Confidence 44444333 366555555556654
No 124
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=77.43 E-value=3.3 Score=41.34 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=21.3
Q ss_pred ccCCCCCCcccccc---CCCCCccccCCCCCCCCCCCHHHHHHhhHHHhhhc
Q psy10461 299 DERNRPLTDDELEA---MFPPGYKVLQPPAGHLAAMTPEQIQAYRWEREIDE 347 (1359)
Q Consensus 299 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1359)
.+|+|+|||+...+ .+-||....- .+.||++|+.++.++-.+++
T Consensus 6 ~~~~r~srW~~~~~~~k~~ip~~pt~i-----p~~Lt~eq~~ay~~~~Riee 52 (124)
T 4fxw_B 6 SKKRKRSRWNQDTMEQKTVIPGMPTVI-----PPGLTREQERAYIVQLQIED 52 (124)
T ss_dssp ------CCBCCC--------CCSCSBC-----CSSCCHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCcccccccCCCCCeec-----CCCCCHHHHHHHHHHhhHHH
Confidence 46778899986421 1223222111 34799999988877666655
No 125
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=75.72 E-value=8.4 Score=50.54 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=78.2
Q ss_pred HhHHHHHhhhcCCCC-HHHHHHHHHHHHHHHHhcCc-cchhhhHHHHHHHHHHHhhcc---C--------c--hhHHHHH
Q psy10461 902 SEIINRVVDDLKDEN-EQYRKMVMESIEKTMSNLGA-ADIDSRLEEQLIDGILYAFQE---Q--------T--TEDVVML 966 (1359)
Q Consensus 902 ~eiI~~Ll~~LKDes-~~VR~~Aa~~L~~Ia~~LGp-e~l~~~L~~~Lld~LLplLqd---~--------~--~eD~v~l 966 (1359)
..+...++..|.|+. ..||.+|+.+|.-+....++ .... .++..|--.+.. . . ...+.++
T Consensus 842 ~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~-----~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aV 916 (997)
T 1vsy_5 842 NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL-----SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNV 916 (997)
T ss_dssp HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH-----HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH-----HHHHHHHHHHhhcccccccccccchHHHHHHHHH
Confidence 456777888999999 99999999999999986534 3111 222222222211 0 0 1227888
Q ss_pred HHHHHHHhhccccc--ccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy10461 967 NGFGTIVNQLGKRV--KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015 (1359)
Q Consensus 967 kaLg~Lae~Lg~~i--kPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~ 1015 (1359)
-++++++.+.+-.+ -+++++++..|-..++|+.+ |+..+-++++.+=.
T Consensus 917 LgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 917 LGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 89999999998776 68999999999888998554 99988888887643
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=75.39 E-value=77 Score=36.68 Aligned_cols=82 Identities=18% Similarity=0.378 Sum_probs=57.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCC-----CchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q psy10461 1071 LLPRLTPILKNRHEKVQENCIDLVGRIAD-RGP-----EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 1144 (1359)
Q Consensus 1071 lLP~L~~LLkDr~~rVR~AAielIg~IA~-~g~-----e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~G 1144 (1359)
++.....++...+--.|++++.++|.|-. +.. .|+...+-++++ +.+|+|..+.|+-.|...|..+...-.
T Consensus 210 Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~---M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 210 FFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLM---MNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHH---HHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHH---HHHhcCchhchhhhhhhheeeeeeCCC
Confidence 44444557788888889999999999865 222 233333344455 678999999999999999999887432
Q ss_pred -chhHHHHHHHh
Q psy10461 1145 -PHDVLATLLNN 1155 (1359)
Q Consensus 1145 -pedVlp~LL~~ 1155 (1359)
+..|...|+.|
T Consensus 287 K~~~I~~IL~~N 298 (341)
T 1upk_A 287 KTQPILDILLKN 298 (341)
T ss_dssp CCHHHHHHHHHT
T ss_pred CChHHHHHHHHH
Confidence 24666666543
No 127
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=73.40 E-value=57 Score=37.46 Aligned_cols=142 Identities=19% Similarity=0.296 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhcCc-cchhhhHHHHHHHHHHHhhccCchhH--HHHHHHHHHHHhhcccccccchHhHHHHHHHh
Q psy10461 918 QYRKMVMESIEKTMSNLGA-ADIDSRLEEQLIDGILYAFQEQTTED--VVMLNGFGTIVNQLGKRVKPYLPQICGTILWR 994 (1359)
Q Consensus 918 ~VR~~Aa~~L~~Ia~~LGp-e~l~~~L~~~Lld~LLplLqd~~~eD--~v~lkaLg~Lae~Lg~~ikPyl~qILpiIl~L 994 (1359)
.+|+.-++-+.+.+..... +.+...+.+++++.+|.-+++..++. ..++..+.++++.++..+.++++.|+..+-.
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe- 122 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE- 122 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-
Confidence 4556666666666653322 22345566677777777666654433 4566778888888888777776666654332
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc---ccChHHHHHHHHHHHHHHHHhCCC--CCCC-ch
Q psy10461 995 LNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLG---EEYPEVLGSILGALKAIVNVIGMT--KMTP-PI 1068 (1359)
Q Consensus 995 L~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L~---De~pEVl~siL~AL~aIa~vlG~~--~lsp-~l 1068 (1359)
.-++.+. ++|||.+.+....|.+++...=.. .+.+ ..
T Consensus 123 -------------------------------------~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f 165 (321)
T 1w9c_A 123 -------------------------------------CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF 165 (321)
T ss_dssp -------------------------------------HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH
T ss_pred -------------------------------------HHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 1122222 358888887777777776542000 0111 12
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy10461 1069 KDLLPRLTPILKNRHEKVQENCIDLVGRI 1097 (1359)
Q Consensus 1069 ~~lLP~L~~LLkDr~~rVR~AAielIg~I 1097 (1359)
+.++-.+.--+++.+..|-+...+.+-.+
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 34455555456777777776666655544
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.37 E-value=14 Score=37.22 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=54.6
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LA 1251 (1359)
||.+.+.+|.+-|+...++|+..++.-|..+.+.||..+...+ ..++.-|..++...+..||.-....+..-+
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999998543322 334444455555567788877777776655
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.37 E-value=16 Score=37.36 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=56.2
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc------cChHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD------RDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D------~D~~VRqtA~saIk~L 1250 (1359)
||.+.+.+|.+-++.+.++|+..++.-|..+.+.||..+...+ ..++.-|.+++.+ .+..||.-....|..-
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999998554433 3556666677754 3567887777777665
Q ss_pred H
Q psy10461 1251 A 1251 (1359)
Q Consensus 1251 A 1251 (1359)
+
T Consensus 125 ~ 125 (149)
T 3g2s_A 125 T 125 (149)
T ss_dssp H
T ss_pred H
Confidence 5
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.81 E-value=19 Score=36.69 Aligned_cols=73 Identities=12% Similarity=0.035 Sum_probs=56.2
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc------cChHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD------RDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D------~D~~VRqtA~saIk~L 1250 (1359)
||.+.+-+|.+-++.+.++|+..++.-|..+.+.||..+...+ ..++.-|.+++.+ .+..||.-....|..-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999998654444 4566666666654 2667887767666665
Q ss_pred H
Q psy10461 1251 A 1251 (1359)
Q Consensus 1251 A 1251 (1359)
+
T Consensus 115 ~ 115 (148)
T 1mhq_A 115 T 115 (148)
T ss_dssp H
T ss_pred H
Confidence 5
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=60.39 E-value=26 Score=36.23 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=52.9
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc-cChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-RDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D-~D~~VRqtA~saIk~LA 1251 (1359)
+|.+.+-+|.+-|+...++|+..++.-|..+.+.||..+...+ ..++..|..++.. .+..||.-+...|..-+
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999999999998544333 2344445555543 45677776666665544
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=59.92 E-value=25 Score=38.13 Aligned_cols=142 Identities=8% Similarity=-0.041 Sum_probs=80.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-CchhhHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHhCchhHHH
Q psy10461 1073 PRLTPILKNRHEKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKAHKKAI-RRATVNTFGYIAKAIGPHDVLA 1150 (1359)
Q Consensus 1073 P~L~~LLkDr~~rVR~AAielIg~IA~~g~-e~v~~kE~mrIc~eLLelLkD~~~sV-R~AAv~tLg~IAk~~GpedVlp 1150 (1359)
..+..++.+.....|..++.++........ +.+. ....+++ ..+++.+ -..|..++|.+... .++.+..
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~------~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~-~p~~~~~ 134 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIP------FLEELIV--TKSWWDSVDSIVPTFLGDIFLK-HPELISA 134 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHH------HHHHHHT--SSCCHHHHHHHTTTHHHHHHHH-CGGGGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHH------HHHHHHc--cCCChHHHHHhhHHHHHHHHHH-CHHHHHH
Confidence 344446666666788888888865433221 1111 1111222 1123333 33345666776665 4554555
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhHHhHHHHHHH
Q psy10461 1151 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED 1230 (1359)
Q Consensus 1151 ~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL~~VlPlLed 1230 (1359)
.+..-.++++.++|..+.+..-.-.....+..+++.+.+++.|++..||-+|.++|..++..-. ..|++.|++
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p-------~~v~~fl~~ 207 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP-------DVVWEYVQN 207 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH-------HHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH-------HHHHHHHHH
Confidence 5666666777677666443321111111233677888889999999999999999877654432 366666654
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=56.21 E-value=31 Score=36.00 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=55.6
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc------cChHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD------RDLVHRQTACATIKHM 1250 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D------~D~~VRqtA~saIk~L 1250 (1359)
+|.+.+-+|.+-++.+.++|+..++.-|..+.+.||..+...+ ..++.-|..++.. .+..||.-+...|..-
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999999999998554433 3456666666653 2567887777777665
Q ss_pred H
Q psy10461 1251 A 1251 (1359)
Q Consensus 1251 A 1251 (1359)
+
T Consensus 127 ~ 127 (171)
T 1juq_A 127 T 127 (171)
T ss_dssp H
T ss_pred H
Confidence 5
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.07 E-value=1.4e+02 Score=29.89 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=57.8
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~--mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
.++-+..|..-++++++.|+..++.++..+...|+..|... + -+.+.++..+++.....||.-+...+..-+..|..
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~e-vas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLE-VCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH-HSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHH-HhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 56778888888889999999999999999999887654421 1 11334445555556678999888888888888865
Q ss_pred h
Q psy10461 1146 H 1146 (1359)
Q Consensus 1146 e 1146 (1359)
+
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.84 E-value=45 Score=36.14 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=53.2
Q ss_pred cCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc-cChHHHHHHHHHHHHHH
Q psy10461 1178 CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-RDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1178 ~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D-~D~~VRqtA~saIk~LA 1251 (1359)
-||.+.+.+|.+-|+.+.++|+..++.-|..+.+++|..+...+ ..++..|..++.. .+..||.-....|..-+
T Consensus 41 ~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 41 TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999997433322 2344444445433 35677776666666554
No 136
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=52.32 E-value=73 Score=35.63 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred ccHHHHHHhcCCCC-chhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcCCC
Q psy10461 1182 TVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG 1258 (1359)
Q Consensus 1182 ~VLPaLLnlLkDpE-~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~glG 1258 (1359)
-+.|.|-...++.. -.+|...+.-++.+.+.=......|+ ..|+|+..+.++-.+...|..|.-++..|-+.-.|+.
T Consensus 101 yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~ 180 (268)
T 2fv2_A 101 FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLA 180 (268)
T ss_dssp GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHH
Confidence 34554333333322 23565555555555544333344444 4688877777776777777666666666533222221
Q ss_pred ----ch---hHHhhhHHh-hhcccccCChHHHHHHHHHHHHHHHhhchHHHHHhHhhh
Q psy10461 1259 ----CE---DALTHLLNY-VWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQG 1308 (1359)
Q Consensus 1259 ----~E---daliHlLnl-vlPnI~Etsp~Vi~~ileaLeaLr~aLG~~~ll~~vLpg 1308 (1359)
-. .++.+.|+. |...+.+.++-+..+++.||-.+....-.-..++..+|-
T Consensus 181 YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~ 238 (268)
T 2fv2_A 181 YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPD 238 (268)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCG
T ss_pred HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcH
Confidence 11 233333333 333444577778888999986554443333334444443
No 137
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=51.61 E-value=67 Score=34.66 Aligned_cols=137 Identities=13% Similarity=0.076 Sum_probs=79.6
Q ss_pred hcccChHHHHHHHHHHHHHHHHhCCCCCCCchhchHHHHHHHh-cCCCHHHHHHH-HHHHHHHHhhCCCchhhHHHHHHH
Q psy10461 1037 LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENC-IDLVGRIADRGPEYVSAREWMRIC 1114 (1359)
Q Consensus 1037 L~De~pEVl~siL~AL~aIa~vlG~~~lsp~l~~lLP~L~~LL-kDr~~rVR~AA-ielIg~IA~~g~e~v~~kE~mrIc 1114 (1359)
..+.+.|....++..+......+ ++ +-++.+-..+ ...+|.+.-.. ..+++.+...-++.+.
T Consensus 70 ~~~~~~E~r~~ai~~l~~~~k~~-----~~---~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~~-------- 133 (232)
T 3jxy_A 70 WDLPEREFQAAALDIMQKYKKHI-----NE---THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELIS-------- 133 (232)
T ss_dssp HTSSBHHHHHHHHHHHHHTGGGC-----CG---GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGGG--------
T ss_pred hcCcHHHHHHHHHHHHHHHHHhC-----CH---HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHHH--------
Confidence 34456665555555554322222 11 3344444433 35778886554 3566666554332111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHh
Q psy10461 1115 FELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE 1190 (1359)
Q Consensus 1115 ~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnl 1190 (1359)
..+.+|+.+.+.-+||+|+..+-.......++.++..+..++.+.++.||.+++-++..++.. .|..|++.|-+.
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~fl~~~ 208 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEYVQNN 208 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHHHHS
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHC
Confidence 123578898888888888765422212222334555566667778888999999999988876 566677766654
No 138
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=51.08 E-value=3.6e+02 Score=31.64 Aligned_cols=148 Identities=11% Similarity=0.161 Sum_probs=89.8
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHhhcccccc
Q psy10461 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED-VVMLNGFGTIVNQLGKRVK 981 (1359)
Q Consensus 903 eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~eD-~v~lkaLg~Lae~Lg~~ik 981 (1359)
+-+-.|+...+..+...+...++.+..++-.-.|+ +...+++.++.+-.++..+. ..++.-+...+ ..-.
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~----~~~~ 95 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEAC----KRDI 95 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHH----HHCG
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH----HHHH
Confidence 34444554444333356888888888887655554 33357777777666666555 44443333333 2334
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhh--hhH-------H---hHHHHHHHHHHHHhcccChHHHHHHH
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKT--CQE-------E---KLMGHLGVVLYEYLGEEYPEVLGSIL 1049 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~--~~e-------~---~lL~~Ll~iLle~L~De~pEVl~siL 1049 (1359)
.++..+++.|..+++|+++.|-+.+..+.+.+-+.+=. |.. + +.+..+-.-++..+...+.-+...++
T Consensus 96 el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 96 ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 67899999999999999999999999999998764421 110 0 12222222233333333445666677
Q ss_pred HHHHHHHHHh
Q psy10461 1050 GALKAIVNVI 1059 (1359)
Q Consensus 1050 ~AL~aIa~vl 1059 (1359)
.-+..++-+.
T Consensus 176 KFle~VIl~q 185 (386)
T 3o2t_A 176 KFVEGLIVTL 185 (386)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777776543
No 139
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=50.81 E-value=87 Score=33.50 Aligned_cols=126 Identities=12% Similarity=-0.024 Sum_probs=69.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhh
Q psy10461 1078 ILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNL 1156 (1359)
Q Consensus 1078 LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLk-D~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~L 1156 (1359)
++....-..|..++.+++....... .. .+.... .++. -..+.+=...+.+++.+... .++.+...+..-.
T Consensus 63 L~~s~~~E~r~la~~~l~~~~~~~~----~~-~l~~~~---~~l~~~~nWd~~D~~a~~~~~~~~~-~~~~~~~~i~~W~ 133 (220)
T 2b6c_A 63 YYQKTEREYQYVAIDLALQNVQRFS----LE-EVVAFK---AYVPQKAWWDSVDAWRKFFGSWVAL-HLTELPTIFALFY 133 (220)
T ss_dssp HHTSSSHHHHHHHHHHHHHTGGGCC----HH-HHHHGG---GGTTTTCSHHHHHHHHHHHHHHHHH-SGGGHHHHHHHHT
T ss_pred HHcCchhHHHHHHHHHHHHHHhhCC----HH-HHHHHH---HHhccCCcHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHH
Confidence 4555556677777777776543211 11 000000 1121 12233322222455555544 4555666677777
Q ss_pred hcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy10461 1157 KVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 1212 (1359)
Q Consensus 1157 k~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~ 1212 (1359)
++++.++|..++++.-.-.+.-.+..+++.+-+++.|++..||.+|.++|..+++.
T Consensus 134 ~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 134 GAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp TCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 77777777664442211112112346788888899999999999999998776654
No 140
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=50.17 E-value=1.2e+02 Score=34.26 Aligned_cols=153 Identities=9% Similarity=-0.031 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCchhHHHHHHHhhhcccchhHHHHH--HHHHHHhhhcCccccHHHHHHhcCCC-CchhHHHHHHHHH
Q psy10461 1131 ATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTT--VAIAIVAETCSPFTVLPALMNEYRVP-ELNVQNGVLKALS 1207 (1359)
Q Consensus 1131 AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe~~VRv~ta--~AIg~LAea~gP~~VLPaLLnlLkDp-E~nVR~~VlkaLs 1207 (1359)
..+..+..+. .|+.+.++|. ++.+ |+++. .+-+.+++.-....++..++..+.++ .++.+.-+++.+.
T Consensus 103 ~~l~~l~kil-~WP~~~~fPv-LDLl-------Rl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~ 173 (304)
T 3ebb_A 103 QQLQILWKAI-NCPEDIVFPA-LDIL-------RLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFC 173 (304)
T ss_dssp HHHHHHHHHH-TSCTTTCHHH-HHHH-------HHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHhHHHH-HHHH-------HHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 3455666664 7888777774 3333 33221 11123333322345666666666542 2444666666665
Q ss_pred HHHHHh-hh-hchhhHHhHHHHHHHHHhccChHHHHHHHHHHHHHHhhhcC-CCchhH--HhhhHHhhhcccccCChHHH
Q psy10461 1208 FLFEYI-GE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYG-FGCEDA--LTHLLNYVWPNIFETSPHLV 1282 (1359)
Q Consensus 1208 ~Iae~I-G~-~~kdYL~~VlPlLedaL~D~D~~VRqtA~saIk~LAl~~~g-lG~Eda--liHlLnlvlPnI~Etsp~Vi 1282 (1359)
-+|..- |. .......+|+..+..++.+.+..+|.++++.+-.+|..... .+.+.. +...+.-++. .+++++..
T Consensus 174 NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~--~~~d~Eal 251 (304)
T 3ebb_A 174 NCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILE--VVQDLEAT 251 (304)
T ss_dssp HGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHT--TCCCHHHH
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh--ccCCHHHH
Confidence 555432 11 11122356777777777777888998777777666643221 122211 1122223333 24688888
Q ss_pred HHHHHHHHHHHH
Q psy10461 1283 QAFMDAVEGLRV 1294 (1359)
Q Consensus 1283 ~~ileaLeaLr~ 1294 (1359)
.+++-+|..+..
T Consensus 252 yR~LvALGtL~~ 263 (304)
T 3ebb_A 252 FRLLVALGTLIS 263 (304)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 898888877664
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.15 E-value=86 Score=33.59 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=53.4
Q ss_pred CccccHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHHHHHHHhc-cChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-RDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPlLedaL~D-~D~~VRqtA~saIk~LA 1251 (1359)
+|.+.+-+|.+-|+.+.++|+..++.-|..+.+++|..+...+ ..++..|..++.+ .+..||..+...+..-+
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999999999999997543333 2344444455443 46778776666666554
No 142
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=46.08 E-value=4e+02 Score=30.79 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=61.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh----CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhH
Q psy10461 1073 PRLTPILKNRHEKVQENCIDLVGRIADR----GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 1148 (1359)
Q Consensus 1073 P~L~~LLkDr~~rVR~AAielIg~IA~~----g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedV 1148 (1359)
-.++...+..+-.|-.-|...+..+-.+ +.+|+... +.+....+-.+|...++-.|+.+++.||.|--.
T Consensus 167 ~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n-yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLld------ 239 (341)
T 1upk_A 167 YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH-YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLD------ 239 (341)
T ss_dssp GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh-HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhC------
Confidence 3444445555555544444444444221 22333332 333444444566777778888888777765331
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhcCccccHHHHHHhcCCCCchhHHHHHHHHHH
Q psy10461 1149 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSF 1208 (1359)
Q Consensus 1149 lp~LL~~Lk~qe~~VRv~ta~AIg~LAea~gP~~VLPaLLnlLkDpE~nVR~~VlkaLs~ 1208 (1359)
|.+. ..+-.-++...-|-.+|++|+|+..++|..+..-+..
T Consensus 240 ---------------r~N~----~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKv 280 (341)
T 1upk_A 240 ---------------RHNF----TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV 280 (341)
T ss_dssp ---------------GGGH----HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ---------------chHH----HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheee
Confidence 1110 1111122223467889999999999999888877643
No 143
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=45.24 E-value=1.4e+02 Score=35.17 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=68.6
Q ss_pred cccccChHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHHhhccCch--hHHHHHHHHHHH
Q psy10461 895 PARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT--EDVVMLNGFGTI 972 (1359)
Q Consensus 895 LA~klg~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGpe~l~~~L~~~Lld~LLplLqd~~~--eD~v~lkaLg~L 972 (1359)
+|++.=....+.+|+..+..++++-|...-..|.+|-..+... ..-.+..+-+.|..+.-+.+. +..-++..+|.+
T Consensus 166 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~--R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsI 243 (392)
T 2jak_A 166 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL--RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSI 243 (392)
T ss_dssp HHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 3455444556889999999999999999999998887765532 222333444444444433222 226788999999
Q ss_pred Hhhcccccc-cchHhHHHHHHHhhcCCC
Q psy10461 973 VNQLGKRVK-PYLPQICGTILWRLNNKS 999 (1359)
Q Consensus 973 ae~Lg~~ik-Pyl~qILpiIl~LL~Des 999 (1359)
+++...-++ .|..-+..+|++|.+.+.
T Consensus 244 Ingfa~PLKeehk~Fl~~vLlPLhk~~~ 271 (392)
T 2jak_A 244 INGFALPLKEEHKIFLLKVLLPLHKVKS 271 (392)
T ss_dssp HHTCCSSCCHHHHHHHHHTTGGGGTSGG
T ss_pred HhccCCCCcHHHHHHHHHHhHhhccCCc
Confidence 998875554 444446677788877543
No 144
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=41.91 E-value=50 Score=37.94 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=49.0
Q ss_pred cHHHHHHhcCCCCchhH-HHHHHHHHHHHHHhhhhchhhHHhHHHHHHH----HHh---ccChHHHHHHHHHHHHHHh
Q psy10461 1183 VLPALMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLED----ALM---DRDLVHRQTACATIKHMAL 1252 (1359)
Q Consensus 1183 VLPaLLnlLkDpE~nVR-~~VlkaLs~Iae~IG~~~kdYL~~VlPlLed----aL~---D~D~~VRqtA~saIk~LAl 1252 (1359)
++-+++.-|+...|..| ..|+..++.+...+|....++++.|+..+.+ +.. ++.+.||..=-..++++..
T Consensus 74 Ll~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~ 151 (321)
T 1w9c_A 74 LLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNS 151 (321)
T ss_dssp HHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 34445666777778888 5889999999999998888888777665443 333 3468999655556666543
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.82 E-value=1.8e+02 Score=29.63 Aligned_cols=90 Identities=9% Similarity=0.044 Sum_probs=62.2
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKA------HKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD------~~~sVR~AAv~tLg~IA 1140 (1359)
.++-+..|..-++++++.|+..++.++..+...|+.-|... .-.+.+.+|..++++ ....||.-+...|..-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 56777888888889999999999999999999887654321 001133445556643 35689999999999999
Q ss_pred HHhCchhHHHHHHHhhh
Q psy10461 1141 KAIGPHDVLATLLNNLK 1157 (1359)
Q Consensus 1141 k~~GpedVlp~LL~~Lk 1157 (1359)
..|+.+.-+...-+.|+
T Consensus 126 ~~f~~~p~i~~~Y~~Lk 142 (149)
T 3g2s_A 126 VGLPEEVKIAEAYQMLK 142 (149)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHH
Confidence 98865433333344444
No 146
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=40.20 E-value=1.8e+02 Score=29.86 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=56.5
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhHHH--HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhC
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG 1144 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~kE~--mrIc~eLLelLkD-~~~sVR~AAv~tLg~IAk~~G 1144 (1359)
.++.+..|..-++++++.|+..++.++..+...|...|... + -+.+.++..+++. .+..||.-+...+..-+..|+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~e-vas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLE-VCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHH-HTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH-HhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 56777778788889999999999999999999987644321 1 1133344455543 356888888888888888887
Q ss_pred ch
Q psy10461 1145 PH 1146 (1359)
Q Consensus 1145 pe 1146 (1359)
.+
T Consensus 129 ~~ 130 (163)
T 1x5b_A 129 KD 130 (163)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 147
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=38.93 E-value=44 Score=35.85 Aligned_cols=98 Identities=9% Similarity=-0.030 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhhhccc
Q psy10461 1081 NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE 1160 (1359)
Q Consensus 1081 Dr~~rVR~AAielIg~IA~~g~e~v~~kE~mrIc~eLLelLkD~~~sVR~AAv~tLg~IAk~~GpedVlp~LL~~Lk~qe 1160 (1359)
-.+|.+.-..+.+++.+...-++. +...+.+|+++.+..+||+|+..+-.-.+.-.++.++..+-.++.+.+
T Consensus 101 ~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~ 172 (220)
T 2b6c_A 101 KAWWDSVDAWRKFFGSWVALHLTE--------LPTIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEE 172 (220)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSGGG--------HHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHChHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChH
Confidence 467888776666666665432211 112246889998888888887754222222122344444444677778
Q ss_pred chhHHHHHHHHHHHhhhcCccccHHHH
Q psy10461 1161 RQNRVCTTVAIAIVAETCSPFTVLPAL 1187 (1359)
Q Consensus 1161 ~~VRv~ta~AIg~LAea~gP~~VLPaL 1187 (1359)
+.||.+++-++..++.. .|..+++.|
T Consensus 173 ~yV~kavgW~Lr~~~k~-~~~~v~~fl 198 (220)
T 2b6c_A 173 FFIQKAIGWSLRQYSKT-NPQWVEELM 198 (220)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 88999999999988876 455666666
No 148
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=37.85 E-value=22 Score=35.47 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHhhhhh
Q psy10461 783 AMTPEQIQAYRWEREID 799 (1359)
Q Consensus 783 ~m~pe~~~~~~~e~~i~ 799 (1359)
.||++|..+|..+.-|+
T Consensus 35 ~Lt~eq~~ay~~~~Rie 51 (124)
T 4fxw_B 35 GLTREQERAYIVQLQIE 51 (124)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHH
Confidence 69999999987655444
No 149
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=36.09 E-value=1.4e+02 Score=31.00 Aligned_cols=90 Identities=9% Similarity=0.069 Sum_probs=62.0
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKA------HKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD------~~~sVR~AAv~tLg~IA 1140 (1359)
.++.+..|..-++++++.|+..++.++..+...|+.-|... .--+.+.+|..+++. ....||.-+...+..-+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45677778788889999999999999999999887544321 001133445555542 25689999999999999
Q ss_pred HHhCchhHHHHHHHhhh
Q psy10461 1141 KAIGPHDVLATLLNNLK 1157 (1359)
Q Consensus 1141 k~~GpedVlp~LL~~Lk 1157 (1359)
..|+.+.-+..+-..|+
T Consensus 128 ~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 128 MALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHHH
Confidence 98876543444444444
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=33.40 E-value=1.1e+02 Score=31.38 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred CccccHHHHHHhcC-CCCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHHH-HHHHHhc---cChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPL-LEDALMD---RDLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLk-DpE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlPl-LedaL~D---~D~~VRqtA~saIk~LA 1251 (1359)
+|.+.+-+|.+-++ .+.++|+..++.-|..+.+.||..+...+ ..++.- |.+++.+ .+..||.-+...|..-+
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 45578899999998 58899999999999999999998554433 234443 5555543 34577776666666554
No 151
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=27.75 E-value=5.3e+02 Score=29.07 Aligned_cols=75 Identities=11% Similarity=0.005 Sum_probs=48.4
Q ss_pred cchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHH
Q psy10461 982 PYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL-GEEYPEVLGSILGALKAIV 1056 (1359)
Q Consensus 982 Pyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl~~~~e~~lL~~Ll~iLle~L-~De~pEVl~siL~AL~aIa 1056 (1359)
.+..+|+..+...+.+.+..+|.++|.++-++|-.+......+....++..+.+.+ .+.++|.+--++-||+.+.
T Consensus 187 ~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 187 SQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45678888888888888999999999999999987642111111112333333333 2346677666667777666
No 152
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=26.32 E-value=2.2e+02 Score=28.89 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=60.7
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKA------HKKAIRRATVNTFGYIA 1140 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD------~~~sVR~AAv~tLg~IA 1140 (1359)
.++-+..|..-++++++.|+..++.++..+...|+.-|... .--+.+.+|..++++ ....||.-+...+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45677777777889999999999999999999987544321 001133344455543 25689999999999888
Q ss_pred HHhCchhHHHHHHHhhh
Q psy10461 1141 KAIGPHDVLATLLNNLK 1157 (1359)
Q Consensus 1141 k~~GpedVlp~LL~~Lk 1157 (1359)
..|+.+.-+..+-..|+
T Consensus 116 ~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 116 VWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HHcCCCchHHHHHHHHH
Confidence 88865432333444444
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.07 E-value=4.1e+02 Score=28.22 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=55.3
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCCchhhH-HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCc
Q psy10461 1068 IKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR-EWMRICFELLELLKAH-KKAIRRATVNTFGYIAKAIGP 1145 (1359)
Q Consensus 1068 l~~lLP~L~~LLkDr~~rVR~AAielIg~IA~~g~e~v~~k-E~mrIc~eLLelLkD~-~~sVR~AAv~tLg~IAk~~Gp 1145 (1359)
.++.+..|..-++++++.|+..++.++..+...|+.-|... --.+.+.++..++++. ...||.-+.+.+..-+..|..
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 56788888888889999999999999999999886533211 0011333445555543 467888888888888887764
No 154
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=21.32 E-value=5e+02 Score=33.25 Aligned_cols=112 Identities=9% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcCc---cchhhhHHHHHHHHHHHhhcc--CchhH--HHHHHHHHHHH
Q psy10461 901 ASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGA---ADIDSRLEEQLIDGILYAFQE--QTTED--VVMLNGFGTIV 973 (1359)
Q Consensus 901 ~~eiI~~Ll~~LKDes~~VR~~Aa~~L~~Ia~~LGp---e~l~~~L~~~Lld~LLplLqd--~~~eD--~v~lkaLg~La 973 (1359)
++-+.+.++..+-+++..+...+..++..++. +-| + -+.+.+++.+-+.|+. .+... ..++++|..++
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~-l~P~~~~----lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLE-LDPSNAY----LIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-TCCTTHH----HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHh-cCCCccc----eehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Q ss_pred hhc--ccccccchHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHh
Q psy10461 974 NQL--GKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM 1017 (1359)
Q Consensus 974 e~L--g~~ikPyl~qILpiIl~LL~Des~~VR~aAAe~Is~LA~vl 1017 (1359)
..+ +...++|+..|+..+++-+.-.++.=-..+..+++.++..+
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhc
No 155
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.85 E-value=1.1e+02 Score=31.18 Aligned_cols=77 Identities=17% Similarity=0.071 Sum_probs=52.7
Q ss_pred CccccHHHHHHhcCC-CCchhHHHHHHHHHHHHHHhhhhchhhH--HhHHH-HHHHHHhcc---ChHHHHHHHHHHHHHH
Q psy10461 1179 SPFTVLPALMNEYRV-PELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTP-LLEDALMDR---DLVHRQTACATIKHMA 1251 (1359)
Q Consensus 1179 gP~~VLPaLLnlLkD-pE~nVR~~VlkaLs~Iae~IG~~~kdYL--~~VlP-lLedaL~D~---D~~VRqtA~saIk~LA 1251 (1359)
||.+.+.+|.+-++. +.++|+..++.-|..+.+.||..+...+ ...+. +|.+++.+. ...||.-....|..-+
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 566889999999984 5778888899999999999997544333 23333 344455443 3468877777777766
Q ss_pred hhhc
Q psy10461 1252 LGVY 1255 (1359)
Q Consensus 1252 l~~~ 1255 (1359)
..+.
T Consensus 130 ~~F~ 133 (152)
T 3rru_A 130 QGFP 133 (152)
T ss_dssp TCCS
T ss_pred HHhC
Confidence 4433
Done!