RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10461
(1359 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 265 bits (678), Expect = 9e-77
Identities = 68/370 (18%), Positives = 147/370 (39%), Gaps = 24/370 (6%)
Query: 896 ARLVGASEIINRVVDDLK----DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGI 951
A+L+ ++ V+ L+ D++ + R MV + + +G + L + +
Sbjct: 231 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 952 LYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLIS 1011
E + F ++ R + QI I +++ + V+ A +I
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSAD-CRENVIMSQILPCIKELVSDANQHVKSALASVIM 349
Query: 1012 RIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDL 1071
++ ++ ++ + HL + L +E PEV +I+ L + VIG+ ++ + L
Sbjct: 350 GLSPIL---GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL---SQSL 403
Query: 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRA 1131
LP + + ++ +V+ I+ + +A + + +C + L H AIR A
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC---MAWLVDHVYAIREA 460
Query: 1132 TVNTFGYIAKAIGPHDVLATLLNNLKVQERQ----NRVCTTVAIAIVAETCSP----FTV 1183
+ + + G AT++ + +R+ T I +++E C +
Sbjct: 461 ATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHM 520
Query: 1184 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1243
LP ++ P NV+ V K+L + + V P+LE D+D+ + A
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFA 578
Query: 1244 CATIKHMALG 1253
+ ++L
Sbjct: 579 QEALTVLSLA 588
Score = 122 bits (306), Expect = 1e-28
Identities = 65/449 (14%), Positives = 154/449 (34%), Gaps = 42/449 (9%)
Query: 905 INRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVV 964
I ++D+L++E+ Q R ++ + LG R +L+ + ++ +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALG----VERTRSELLPFLTDTIYDEDEVLLA 67
Query: 965 MLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEK 1024
+ GT +G Y+ + + + VR +A + + I+
Sbjct: 68 LAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAIS---HEHSPSD 122
Query: 1025 LMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE 1084
L H ++ G ++ S G + +L + +
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK----AELRQYFRNLCSDDTP 178
Query: 1085 KVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 1143
V+ +G A + V + I L + ++R V IA+ +
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKS----EIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 1144 GPHDVLATLLNNLK--VQERQNRVCTTVAIAI--VAETCSPFTV----LPALMNEYRVPE 1195
D+ A ++ L+ +++ RV VA + + P +PA N + E
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1196 LNVQNGVLKALSFLFEYIGEMGKDYIY--AVTPLLEDALMDRDLVHRQTACATIKHMALG 1253
V+ + E + ++ + + P +++ + D + + + I ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP- 353
Query: 1254 VYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPA 1313
G ++ + HLL + + P + + ++ + +G ++ Q +L + A
Sbjct: 354 --ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 1314 RKVRDVYWKIYNSLYIGGQDALISAYPRI 1342
D W++ + A+I P +
Sbjct: 412 ---EDAKWRV--------RLAIIEYMPLL 429
Score = 54.3 bits (130), Expect = 2e-07
Identities = 36/264 (13%), Positives = 80/264 (30%), Gaps = 30/264 (11%)
Query: 1070 DLLPRLTPILKNRHEKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKA---HK 1125
+ L L+N +++ N I + IA G E R ELL L +
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--------RTRSELLPFLTDTIYDE 61
Query: 1126 KAIRRATVNTFGYIAKAIGP----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 1181
+ A G +G H +L L + V+E R ++ ++ SP
Sbjct: 62 DEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 1182 TVLPALMNEYR----VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 1237
+ + + + S + + K + + D
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL---RQYFRNLCSDDTP 178
Query: 1238 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 1297
+ R+ A + + A + ++ + ++ + + ++A + L
Sbjct: 179 MVRRAAASKLGEFAKVL---ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1298 PV----RILQYVLQGLFHPARKVR 1317
++ + Q + +VR
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVR 259
Score = 52.3 bits (125), Expect = 9e-07
Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 10/173 (5%)
Query: 439 DSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTL 498
L E+ + + L ++ + +R + T+ + G ++P + +
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN-LM 290
Query: 499 EDQE---RHLLVKVIDRILYKL--DDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISN 553
+D E R + L D + +IL I+ L+ D + + + +I
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 554 LAKAAGLATMISTMRPDIDNI----DEYVRNTTARAFAVVASALGIPSLLPFL 602
L+ G I + P VR V +GI L L
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Score = 50.0 bits (119), Expect = 4e-06
Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 438 EDSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT 497
+DSL P I L+ +++N +R ++++++ A G +++LP L
Sbjct: 6 DDSLYP-------IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTD-- 56
Query: 498 LEDQERHLLVKVIDRILYKLDDLVRP-YVHKILVVIEPLLIDEDYYARVEGREIISNLAK 556
E +L+ + +++ + P YVH +L +E L E+ R + E + ++
Sbjct: 57 TIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISH 116
Query: 557 ---AAGLATMISTMRPDIDNIDEY-VRNTTARAFAVVASALG---IPSLLPFLKA 604
+ L + + D + R + F+V + L + +
Sbjct: 117 EHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRN 171
Score = 49.2 bits (117), Expect = 8e-06
Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 11/167 (6%)
Query: 445 EAKERKIMKLLLKI-KNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQE- 502
+ ++ ++++ ++ +R A + + A + G ++ L M+ L D
Sbjct: 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA-WLVDHVY 455
Query: 503 --RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGL 560
R + +++ K I+ + + D +Y R+ I+ L++ G
Sbjct: 456 AIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 561 ATMISTMRPDIDNI----DEYVRNTTARAFAVVASALGIPSLLPFLK 603
M P + + VR A++ + L +L +K
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK 560
Score = 45.4 bits (107), Expect = 1e-04
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 32/213 (15%)
Query: 419 PFLKPEDAQYFDKLLVDVDE--------------DSLSPEEAKERKIMKLLLKIKNGTPP 464
+K E QYF L D L + K I +
Sbjct: 159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 218
Query: 465 MRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQE---RHLLVKVIDRILYKLDDLV 521
+R A+ + A+ L ++P L ED+ R+++ + + +
Sbjct: 219 VRLLAVEACVNIAQLLPQEDLEALVMPTLRQ-AAEDKSWRVRYMVADKFTELQKAVGPEI 277
Query: 522 RPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDI--------DN 573
++ + L+ D + R + + + + I +
Sbjct: 278 TK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD 335
Query: 574 IDEYVRNTTARAFAVVASALG----IPSLLPFL 602
+++V++ A ++ LG I LLP
Sbjct: 336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 368
Score = 45.4 bits (107), Expect = 1e-04
Identities = 29/175 (16%), Positives = 65/175 (37%), Gaps = 17/175 (9%)
Query: 445 EAKERKIMKLLLK-IKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQE- 502
A + ++ + + TP +R+AA ++ + A+ + ++I+P+ + ++Q+
Sbjct: 159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 218
Query: 503 -RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA 561
R L V+ I L ++ + D+ + R + + L KA G
Sbjct: 219 VRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE 276
Query: 562 TMISTMRPDIDNI----DEYVRNTTARAFAVVASALG--------IPSLLPFLKA 604
+ + P N+ + VR + L + +LP +K
Sbjct: 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331
Score = 42.3 bits (99), Expect = 0.001
Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 443 PEEAKERKIMKLLLK-IKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQ 501
E + K+ L + + + +R+AA + +FG I+P +++ D
Sbjct: 434 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA-MSGDP 492
Query: 502 E---RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA 558
R + I+ + +L + + D R + + +
Sbjct: 493 NYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550
Query: 559 GLATMISTMRPDIDNI----DEYVRNTTARAFAVVASA 592
+T+ S ++P ++ + D V+ A V++ A
Sbjct: 551 DNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
Score = 40.4 bits (94), Expect = 0.004
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 439 DSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTL 498
+ E A I K+L + R L I + G +LP ++
Sbjct: 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLR-MA 528
Query: 499 EDQE---RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA 555
D R + K + +I LD+ ++ ++E L D+D + +E ++ L+
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Query: 556 KA 557
A
Sbjct: 587 LA 588
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 47
Score = 85.4 bits (211), Expect = 1e-20
Identities = 38/46 (82%), Positives = 44/46 (95%)
Query: 332 TPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYIPI 377
TPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPAGY+PI
Sbjct: 2 TPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPI 47
Score = 77.7 bits (191), Expect = 6e-18
Identities = 35/43 (81%), Positives = 41/43 (95%)
Query: 285 TPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGH 327
TPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPAG+
Sbjct: 2 TPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGY 44
Score = 75.8 bits (186), Expect = 3e-17
Identities = 34/41 (82%), Positives = 39/41 (95%)
Query: 785 TPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPA 825
TPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL PPA
Sbjct: 2 TPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPA 42
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing,
adenine, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P
2f9j_P
Length = 39
Score = 77.6 bits (191), Expect = 5e-18
Identities = 32/39 (82%), Positives = 38/39 (97%)
Query: 283 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 321
+MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39
Score = 77.6 bits (191), Expect = 5e-18
Identities = 32/39 (82%), Positives = 38/39 (97%)
Query: 330 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 368
+MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39
Score = 77.6 bits (191), Expect = 5e-18
Identities = 32/39 (82%), Positives = 38/39 (97%)
Query: 783 AMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVL 821
+MTPEQ+QA+RWEREIDERNRPL+D+EL+AMFP GYKVL
Sbjct: 1 SMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVL 39
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 84.0 bits (207), Expect = 6e-18
Identities = 43/233 (18%), Positives = 95/233 (40%), Gaps = 16/233 (6%)
Query: 1069 KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKA 1127
+ +L +L +L + V +N I ++ IA + + +L LL K+
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIP 85
Query: 1128 IRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1185
+ + FG +AK ++ L N ++ + + ++ + A+ +A+ +P +
Sbjct: 86 LTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMAS 144
Query: 1186 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 1245
+ + + + L AL+F+ E +GE Y+ P + + L D D + R +A
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI-EAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVE 203
Query: 1246 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP 1298
+ H+A D L ++ + +TS + + + + L + G
Sbjct: 204 ALVHLATL------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGH 250
Score = 60.5 bits (146), Expect = 7e-10
Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 28/252 (11%)
Query: 896 ARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAF 955
++ ++++ L D+ K + I A L E ++ +
Sbjct: 25 IMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVI------AKTREDLYEPMLKKLFSLL 78
Query: 956 QEQTTEDVVM--LNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRI 1013
++ + FG + + + VK +P + K + + + I
Sbjct: 79 KKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP----VLFANYRIGDEKTKINVSYALEEI 134
Query: 1014 AVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLP 1073
A + L + E + L ++A+ + LP
Sbjct: 135 AKANPMLMASIVRD-----FMSMLSSKNREDKLTALNFIEAM-----GENSFKYVNPFLP 184
Query: 1074 RLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATV 1133
R+ +L + E V+ + ++ + +A + ++ + LE L + +
Sbjct: 185 RIINLLHDGDEIVRASAVEALVHLATLNDKL------RKVVIKRLEELNDTSSLVNKTVK 238
Query: 1134 NTFGYIAKAIGP 1145
+ G
Sbjct: 239 EGISRLLLLEGH 250
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein; 2.30A
{Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A
2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 76.8 bits (188), Expect = 3e-14
Identities = 52/394 (13%), Positives = 127/394 (32%), Gaps = 40/394 (10%)
Query: 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE 961
E+I ++ L D+ R + ++ + ++ + + L+ +L +
Sbjct: 399 PELIPHLIQCLSDKKALVRSITCWTLSR-YAHWVVSQPPDTYLKPLMTELLKRILDS--N 455
Query: 962 DVVMLNGFGTIVN---QLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIA-VVM 1017
V + + PYL I T+++ + K D I +A V
Sbjct: 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 515
Query: 1018 KTCQEEKLMGHLGVVLYEYLG--EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRL 1075
+ + + L L + ++ + L +L L ++ + P + + R
Sbjct: 516 HHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQS-GFLPYCEPVYQRC 574
Query: 1076 TPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 1135
+++ + N +Y + + I L+LL + +
Sbjct: 575 VNLVQKTLAQAMLNNAQ--------PDQYEAPDKDFMIV--ALDLLSGLAEGLG------ 618
Query: 1136 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF------TVLPALMN 1189
G I + + ++L + ++ + + R + + + + C +P L
Sbjct: 619 -GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGT 677
Query: 1190 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH--RQTACATI 1247
++V N A+ + +G + YI V L + + + + TI
Sbjct: 678 NLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 737
Query: 1248 KHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL 1281
G G+ C + +L + ++
Sbjct: 738 -----GRLGYVCPQEVAPMLQQFIRPWCTSLRNI 766
Score = 76.8 bits (188), Expect = 4e-14
Identities = 65/424 (15%), Positives = 141/424 (33%), Gaps = 35/424 (8%)
Query: 909 VDDLKDENEQYRKMVMESIEKTMSNLGAADID---SRLEEQLIDGILYAFQE-------Q 958
+ LK + E + + AA +D + ++L+ IL +E
Sbjct: 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 374
Query: 959 TTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK 1018
E +++ G I + + PYLP++ ++ L++K A VR +SR A +
Sbjct: 375 VKESGILV--LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432
Query: 1019 TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPI 1078
+ + + L L + + + V + A + T++ P + +L L
Sbjct: 433 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC-TELVPYLAYILDTLVFA 491
Query: 1079 LKNRHEKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKA--HKKAIRRATVNT 1135
K D +G +AD G + L++ + +
Sbjct: 492 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLEC 551
Query: 1136 FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 1195
+A A+ + +V +T + + A ++Y P+
Sbjct: 552 LSSVATALQ------------SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPD 599
Query: 1196 LNVQNGVLKALSFLFEYIGEMGKDYIYAVT--PLLEDALMDRDLVHRQTACATIKHMALG 1253
+ L LS L E +G + + L+ + D+ RQ++ A + +
Sbjct: 600 KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 659
Query: 1254 VYGFG---CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV--RILQYVLQG 1308
+ D + L + P + A + + + + P +L +++
Sbjct: 660 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEI 719
Query: 1309 LFHP 1312
+ P
Sbjct: 720 INRP 723
Score = 56.7 bits (136), Expect = 5e-08
Identities = 39/364 (10%), Positives = 114/364 (31%), Gaps = 35/364 (9%)
Query: 970 GTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIA-VVMKTCQEEKLMGH 1028
TI ++ + P L + L+++ + A + +I + + L
Sbjct: 115 TTIASKGELQNWPDLLPK---LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171
Query: 1029 LGVVL---YEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK 1085
L +++ ++ P++ + + + + I + L + + +
Sbjct: 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALMLHIDSFIENLFALAGDEEPE 230
Query: 1086 VQENCIDLVGRIADRGPEYVSAREWMRICFE-LLELLKAHKKAIRRATVNTFGYIAKAIG 1144
V++N + + + + + M E +L+ + + + + +A+
Sbjct: 231 VRKNVCRALVMLLEVRMDRL--LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288
Query: 1145 PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLK 1204
DVL L L + V ++ ++ N
Sbjct: 289 CKDVLVRHLPKL--------IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC 340
Query: 1205 ALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT 1264
+ + L + + + PLL++ L + V +++ + LG GC +
Sbjct: 341 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGI-----LVLGAIAEGCMQGMI 395
Query: 1265 HLLNYVWPNIFET----SPHLVQAFMDAVEGLRVALGPV-------RILQYVLQGLFHPA 1313
L + P++ + + + + ++ +L+ +
Sbjct: 396 PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455
Query: 1314 RKVR 1317
++V+
Sbjct: 456 KRVQ 459
Score = 48.3 bits (114), Expect = 2e-05
Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 15/191 (7%)
Query: 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIA 1172
E L + IR IA D+L L + L ++ A+
Sbjct: 94 ECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQ 153
Query: 1173 IVAETCSPF-----------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI 1221
+ E + ++P + ++ +++ + ++ + +I
Sbjct: 154 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 213
Query: 1222 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL 1281
+ L D + R+ C + + + +++ Y+ + ++
Sbjct: 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENV 272
Query: 1282 VQAFMDAVEGL 1292
+ L
Sbjct: 273 ALEACEFWLTL 283
Score = 41.3 bits (96), Expect = 0.002
Identities = 49/387 (12%), Positives = 117/387 (30%), Gaps = 60/387 (15%)
Query: 981 KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEE 1040
P +L +L ++ R + ++ + + +G+
Sbjct: 43 YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDS 102
Query: 1041 YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR 1100
P + ++ + I + + DLLP+L +L + E + +I +
Sbjct: 103 SPLIRATVGILITTIASKGELQNWP----DLLPKLCSLLDSEDYNTCEGAFGALQKICED 158
Query: 1101 GPE----YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP------HDVLA 1150
E V R + + L+ K IR V + +
Sbjct: 159 SAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIE 218
Query: 1151 TLLNNLKVQERQNRVCTTVAIAIVAETCSPF------TVLPALMNEYRVPELNVQNGVLK 1204
L +E + R A+ ++ E ++ ++ + + NV L+
Sbjct: 219 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV---ALE 275
Query: 1205 ALSFLF-------------EYIGEMGKDYIYAVTPLLEDALM--------------DRDL 1237
A F ++ ++ + + D ++ D
Sbjct: 276 ACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335
Query: 1238 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV----EGLR 1293
R+ + A + +A ++ L H+L + +F + ++ + + EG
Sbjct: 336 NLRKCSAAALDVLA----NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391
Query: 1294 VALGPV--RILQYVLQGLFHPARKVRD 1318
+ P ++ +++Q L VR
Sbjct: 392 QGMIPYLPELIPHLIQCLSDKKALVRS 418
Score = 31.7 bits (71), Expect = 2.3
Identities = 29/245 (11%), Positives = 65/245 (26%), Gaps = 26/245 (10%)
Query: 854 YFGVTLAFATSQIFLLTDLLFAYLKRDYTLENGIQKTIKGKPARLVGASEIINRVVDDLK 913
+ V L + L + + R L Q P + ++ +
Sbjct: 602 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF 661
Query: 914 DENEQYRKMVMESIEKTMSN----------LGAADIDSRLE-------EQLIDGILYAFQ 956
+ M + ++ +I ++ ++ ++
Sbjct: 662 QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIIN 721
Query: 957 EQTTEDVVMLN---GFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKV-RQQAADLISR 1012
T ++ N G + + V P L Q L N + A I
Sbjct: 722 RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICT 781
Query: 1013 IAVVMKTCQEEKLMGHLGVVL-YEYLGEEYPEVLGSILGALKAIVNVIG----MTKMTPP 1067
+ V + + + V + ++ ++ IL K V + P
Sbjct: 782 MISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLP 841
Query: 1068 IKDLL 1072
+K+ L
Sbjct: 842 LKERL 846
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 70.1 bits (170), Expect = 4e-12
Identities = 52/414 (12%), Positives = 130/414 (31%), Gaps = 24/414 (5%)
Query: 901 ASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT 960
AS I+ +++ + ++ +R M + + + +D E +++ IL +++
Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQK-DSIKLDDDSERKVVKMILKLLEDK-N 61
Query: 961 EDV--VMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMK 1018
+V + + G +V+++ + + I T+ + + ++R ++ + + +
Sbjct: 62 GEVQNLAVKCLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP 118
Query: 1019 TCQE-EKLMGHLGVVLYEYLGE--EYPEVLGSILGALKAIVNVIG--MTKMTPPIKDLLP 1073
L ++ + L E + L AL + +++ + +L
Sbjct: 119 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILT 178
Query: 1074 RLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATV 1133
L P L + V++ I +G + V + L EL K + R +
Sbjct: 179 CLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL---LSELSKNDSMSTTRTYI 235
Query: 1134 NTFGYIAKAIG----PH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FTVLP 1185
I++ G + ++ ++ V + + R A C + +
Sbjct: 236 QCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS 295
Query: 1186 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 1245
++N N + G D + D R+ A
Sbjct: 296 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 355
Query: 1246 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV 1299
+ + + + + E ++ A L PV
Sbjct: 356 CLDAVV-STRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPV 408
Score = 68.2 bits (165), Expect = 2e-11
Identities = 45/394 (11%), Positives = 132/394 (33%), Gaps = 22/394 (5%)
Query: 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE- 961
E + + L+ + + +++ + N + L +ID +L +E
Sbjct: 650 EGVPILASFLRKNQRALKLGTLSALDILIKNYSDS-----LTAAMIDAVLDELPPLISES 704
Query: 962 DVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNN--KSAKVRQQAAD-LISRIAVVMK 1018
D+ + + + L K L +I G+IL L +S ++ A ++ ++
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 1019 TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM--TKMTPPIKDLLPRLT 1076
T L +L + + + + +I + ++ +
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHK--QSYYSIAKCVAALTRACPKEGPAVVGQFI 822
Query: 1077 PILKNRHEKVQENCIDL--VGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVN 1134
+KN + L +G + ++ + + +LE + + ++ A
Sbjct: 823 QDVKNSRSTDSIRLLALLSLGEVG----HHIDLSGQLELKSVILEAFSSPSEEVKSAASY 878
Query: 1135 TFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP 1194
G I+ + L +L + + + + ++ + + S + P + N + +
Sbjct: 879 ALGSISVG-NLPEYLPFVLQEIT-SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1195 ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 1254
+ + + + E +G++ + P L+ L+ R + +K +
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFT-ISD 995
Query: 1255 YGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA 1288
+ + L + + + + ++ + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVT 1029
Score = 67.4 bits (163), Expect = 3e-11
Identities = 45/412 (10%), Positives = 117/412 (28%), Gaps = 46/412 (11%)
Query: 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED 962
I+ ++ L RK + + +L + + + LI+ +L + +
Sbjct: 175 SILTCLLPQLTSPRLAVRKRTII----ALGHLVMSCGNIVFVD-LIEHLLSELSKNDSMS 229
Query: 963 VV--MLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTC 1020
+ I Q G R+ YL +I ++ N ++R+
Sbjct: 230 TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP-- 287
Query: 1021 QEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG------MTKMTPPIKDLLPR 1074
+ + ++ L L N M D +
Sbjct: 288 --------------KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ 333
Query: 1075 LTPILKNRHE----KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRR 1130
+ + + KV+ + + E + + + L+ K ++ ++
Sbjct: 334 GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP-EFYKTVSPALISRFKEREENVKA 392
Query: 1131 ATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE 1190
+ + + K P + ++ E + + IV AL +
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV----------KALHKQ 442
Query: 1191 YRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQTACATIK 1248
+ + + L+ L + +I + P + +L D+ + A + +
Sbjct: 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 1249 HMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR 1300
+ + L+ V + + + + + L + P+
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD 554
Score = 60.1 bits (144), Expect = 5e-09
Identities = 58/401 (14%), Positives = 131/401 (32%), Gaps = 62/401 (15%)
Query: 899 VGASEIINRVVDDLKDENEQY-RKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQE 957
+G +++ + + ++ K SI K ++ L A ++ + +
Sbjct: 770 LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG--PAVVGQFIQDVKN 827
Query: 958 QTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVM 1017
+ D + L ++ ++ IL ++ S +V+ A+ + I+V
Sbjct: 828 SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVG- 886
Query: 1018 KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP 1077
L +L VL E + + L +L +LK I++ + + P ++++ L
Sbjct: 887 ------NLPEYLPFVLQEITSQPKRQYL--LLHSLKEIISSASVVGLKPYVENIWALLLK 938
Query: 1078 ILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG 1137
+ E + + +G++ PE + R L L + R + V
Sbjct: 939 HCECAEEGTRNVVAECLGKLTLIDPETLLPR--------LKGYLISGSSYARSSVVTAVK 990
Query: 1138 YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN 1197
+ + P + L + + P+LN
Sbjct: 991 FTI-SDHPQPIDPLL----------------------------KNCIGDFLKTLEDPDLN 1021
Query: 1198 VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF 1257
V+ L + + +D + V P L + R I+ + +G +
Sbjct: 1022 VRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRK--------ELIREVEMGPFKH 1073
Query: 1258 GCEDAL--THLLNYVWPNIFETSPHLVQ--AFMDAVE-GLR 1293
+D L + ++ + F++ VE GL+
Sbjct: 1074 TVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLK 1114
Score = 45.5 bits (106), Expect = 1e-04
Identities = 39/230 (16%), Positives = 66/230 (28%), Gaps = 19/230 (8%)
Query: 391 IAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERK 450
TP Q K + Q K + +L V+V +L+
Sbjct: 420 QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTEL-VNVLPGALTQHIPVLVP 478
Query: 451 IMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHL----- 505
+ L K+ + ++ AL + + L+ +
Sbjct: 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE 538
Query: 506 -------LVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA 558
LVKVI + PY+ + L D V+ R I
Sbjct: 539 ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIIC 598
Query: 559 GLATMISTMRPDIDNI------DEYVRNTTARAFAVVASALGIPSLLPFL 602
L + + P+ I +E R TT +A ++A + L P L
Sbjct: 599 NLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVL 648
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 1e-10
Identities = 87/625 (13%), Positives = 167/625 (26%), Gaps = 212/625 (33%)
Query: 26 FIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLSNGKHCGKTPDVGSRTYA--EVMRE 83
F+ ++ K + + PK L E+ D ++ + D S T +
Sbjct: 29 FV--DNFDCKDVQDMPK---SILSKEE---IDHII-------MSKDAVSGTLRLFWTLLS 73
Query: 84 QLVRGEEKEVRKKLQDKAKDGTLKAVPTNGEAKAAPKKRGRWDQTSD---GDVTPAKKKV 140
+ +K V + L+ + P E + + + D D K
Sbjct: 74 KQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY- 129
Query: 141 AAAEWEKEADVNIEAQIRDIQNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGGGKFEG 200
+V+ ++ ++ V + DG G
Sbjct: 130 ---------NVSRLQPYLKLRQALLELRPAKN------VLI-----------DGVL---G 160
Query: 201 YVKSI------ADDDFDYQASFN------QNKRSGYTAPAALLNDIAQSEKDYDPFADRR 248
K+ + F +N S T L + Q + ++ +D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 249 QKTVAEKEDEYRAIRRRM---------II-----SPERVDPFAEG-------HLAAMTPE 287
+RR + ++ + + + F +T
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 288 QIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQ------PP---AGH-LA-AMTPEQI 336
A +D + LT DE++++ K L P + ++ E I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 337 QAY--RWER----EIDERNR-------PLTDDELE------AMFPPGYKVLQPPAGYIPI 377
+ W+ D+ L E ++FPP IP
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--------IPT 389
Query: 378 RTPAR----KLTATPTPIAGTPTGFFIQQEDKTAKY--MDNQPKGNLPFL---------K 422
+ + + + +K KY ++ QPK + + K
Sbjct: 390 ILLSLIWFDVIKSDVMVVV-----------NKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 423 PEDAQYFDKLLVD-------VDEDSLSP------------------EEAKERKIMKLLL- 456
E+ + +VD D D L P E + + +++
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 457 -------KIKN-GTPPMRKAAL-----------RQITDKAREFGAGPLFNQILPLLMSPT 497
KI++ T ++ I D ++ L N IL L
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER--LVNAILDFLPKI- 555
Query: 498 LEDQERHLLVKVIDRILYKLDDLVR 522
E +L I K DL+R
Sbjct: 556 ----EENL-------ICSKYTDLLR 569
Score = 53.3 bits (127), Expect = 6e-07
Identities = 72/471 (15%), Positives = 128/471 (27%), Gaps = 163/471 (34%)
Query: 181 LGESGYFDSDIYDGGGKFEGYVKSIADDDFDYQASFNQNKRSGYTAPAALLNDIAQSEKD 240
GE Y DI + + D+ FD + D+ K
Sbjct: 11 TGEHQYQYKDI------LSVFEDAFVDN-FDCK-------------------DVQDMPKS 44
Query: 241 YDPFADRRQKTVAEKEDEYRAIRRRMII---SPER-VDPFAEGHL--------AAMTPEQ 288
+ + +D R E V F E L + + EQ
Sbjct: 45 I--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 289 IQ-AYRWEREIDERNRPLTDDELEAMFPPGYKV---------------LQPPAG---H-- 327
Q + I++R+R D+++ F Y V L+P
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQV---FAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 328 -------LAAMT--PEQIQAYR-----WEREIDERNRPLTDDELEAM------FPPGYKV 367
+A ++Q W ++ +N + LE + P +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 368 LQPPAGYIPIRTPA------RKLTATPTPIAGTPTGFFIQ---QEDKTAKYMDNQ----- 413
+ I +R + R L + P + Q K +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNVQNAKAWNAFNLSCKILL 270
Query: 414 ---PKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERKIMKLLLKIKNGTPPMRKAAL 470
K FL A + +D +L+P+E K LLLK + R L
Sbjct: 271 TTRFKQVTDFL---SAATTTHISLDHHSMTLTPDEVKS-----LLLKYLD----CRPQDL 318
Query: 471 -RQITDKAREFGAGPLFNQILPLLMS---------PTLEDQERHL----LVKVIDRILYK 516
R++ P +S D +H+ L +I+ L
Sbjct: 319 PREVL-------------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 517 LD-DLVRPYVHKILV----------VIEPLLIDEDYYARVEGREIISNLAK 556
L+ R ++ V ++ + D + +++ L K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS---DVMVVVNKLHK 413
Score = 51.8 bits (123), Expect = 2e-06
Identities = 83/591 (14%), Positives = 171/591 (28%), Gaps = 203/591 (34%)
Query: 781 LAAMTPEQIQ-AYRWEREIDERNRPLTDDELEAMFPPGYKV--LQP------------PA 825
++ + EQ Q + I++R+R D+++ F Y V LQP PA
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAK-YNVSRLQPYLKLRQALLELRPA 150
Query: 826 ACFFI----GC--SMFAPTVWHLWIYTRSANANFYFGV---TLAFATSQIFLLTDL--LF 874
I G + A V + F + L S +L L L
Sbjct: 151 KNVLIDGVLGSGKTWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 875 AYLKRDYTLENGIQKTIKGKPARLVGASEIINR------------VVDDLKDENEQYRKM 922
+ ++T + I R+ + R V+ ++++
Sbjct: 207 YQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA----- 258
Query: 923 VMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDV-VM--LNGFGTIVNQLGKR 979
A ++ ++ L+ TT V L+ T L
Sbjct: 259 -----------WNAFNLSCKI---LL----------TTRFKQVTDFLSAATTTHISLDHH 294
Query: 980 VKPYLPQICGTIL--WRLNNKSAKVRQQAAD----LISRIAVVMKTCQEEKLMGHLGVVL 1033
P ++L + L+ + + ++ +S IA ++ G+
Sbjct: 295 SMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRD----------GLAT 343
Query: 1034 YEYL----GEEYPEVLGSILGALK-----------AI----VNVIGMTKMTPPIKDLLPR 1074
++ ++ ++ S L L+ ++ ++ P LL
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--------PTI-LLSL 394
Query: 1075 L-TPILKNRHEKVQENCIDLVGRIADRGPEYVSAR---EWMRICFELLELLKAHKKAIRR 1130
+ ++K+ V + ++ P+ + ++ + +L H+ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1131 ------------ATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC 1178
Y IG H L N++ ER
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHH------LKNIEHPER----------------- 489
Query: 1179 SPFTVLPALMNEYR---------VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 1229
T+ + ++R N +L L L Y K YI P E
Sbjct: 490 --MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-----KPYICDNDPKYE 542
Query: 1230 ---DALMD------RDLVHRQTACATIKHMAL-----GVYGFGCEDALTHL 1266
+A++D +L+ + + +AL ++ E+A +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTD--LLRIALMAEDEAIF----EEAHKQV 587
Score = 49.1 bits (116), Expect = 1e-05
Identities = 83/531 (15%), Positives = 167/531 (31%), Gaps = 133/531 (25%)
Query: 911 DLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQL----IDGIL----------YAF- 955
+ + QY+ ++ + + N D+ + L ID I+ F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 956 -----QEQTT----EDVVMLNGFGTIVNQLGKRVK-PYLPQI----CGTILWRLNNKSAK 1001
QE+ E+V+ +N + +++ + + P + L+ N AK
Sbjct: 70 TLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 1002 -----------VRQQAADLISRIAVV---M----KT------CQEEKLMGHL-GVVLYEY 1036
+RQ +L V+ + KT C K+ + + +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 1037 LGEEY-PEVLGSILGALKAIV------NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQEN 1089
L PE + +L L + + + I + L +LK K EN
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYEN 245
Query: 1090 CIDLVGRIADRGPEYVSAREWMRICFEL----LELLKAHKKAIRRATVNTFGYIA----- 1140
C+ ++ + + + +A F L L L K+ + T +I+
Sbjct: 246 CLLVLLNVQN--AKAWNA-------FNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 1141 KAIGPHDVLATLLN--NLKVQERQNRVCTT--VAIAIVAETCSPFTVLPALMNEYRVPEL 1196
+ P +V + LL + + Q+ V TT ++I+AE+ A + ++
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---LATWDNWKHVNC 352
Query: 1197 NVQNGVLKA-LSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATIKHMALGV 1254
+ ++++ L+ L E K + +V P A I + L +
Sbjct: 353 DKLTTIIESSLNVLEPA--EYRKMFDRLSVFP--PSAH--------------IPTILLSL 394
Query: 1255 Y-----GFGCEDALTHLLNYV----WPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 1305
+ L Y P S + + AL + Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 1306 LQGLFHP---ARKVRDVYWKIYNSLYIG------GQDALISAYPRIQNDMK 1347
+ F D Y+ Y+ +IG ++ + + D +
Sbjct: 455 IPKTFDSDDLIPPYLDQYF--YS--HIGHHLKNIEHPERMTLFRMVFLDFR 501
Score = 40.2 bits (93), Expect = 0.005
Identities = 44/353 (12%), Positives = 93/353 (26%), Gaps = 85/353 (24%)
Query: 50 PEDAQYFD---KLLSNGKHCGKTPDVGSRTYAEVMREQLVRGEEKEVRKKLQDKAKDGTL 106
+ F+ K+L + T + + T + + + K L K D
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 107 KAVPTNGEAK----------AAPKKRG--RWDQTSDGDVTPAKKKVAA-------AEWEK 147
+ +P E A + G WD + + + AE+ K
Sbjct: 316 QDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 148 --------EADVNIEAQIRDI--QNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGGGK 197
+I + + + K + K L E +S I
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTIS----- 427
Query: 198 FEGYVKSIADDDFDYQASFNQNKR------SGYTAPAAL-LNDIAQSEKD---YDPFADR 247
I + + Y P +D+ D Y
Sbjct: 428 -------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 248 -RQKTVAEKEDEYRA-------IRRRMIISPERVDPFAEGHLAAMTP--EQIQAYR-WER 296
+ E+ +R + +++ R D A ++ +Q++ Y+ +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKI-----RHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 297 EIDERNRPLTDDELEAMFPPGYKV------------LQPPAGHLAAMTPEQIQ 337
+ D + L + L+ + + L + +Q+Q
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 38.3 bits (88), Expect = 0.019
Identities = 50/318 (15%), Positives = 94/318 (29%), Gaps = 110/318 (34%)
Query: 383 KLTATPTPIAGTPTGFFI---QQEDKTAKYMDNQPKGNLPFL----KPEDAQ-------- 427
+ + ++GT F+ +QE+ K+++ + N FL K E Q
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 428 --YFDKLLVDVDEDSLSPEE-AKERKIMKL---LLKIK-------NGTPPMR---KAALR 471
D+L D + ++ + +KL LL+++ +G + K +
Sbjct: 113 IEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---VLGSGKTWV- 166
Query: 472 QITDKAREFGAGPLFN---------------------QILPLLMSPTLEDQERHL--LVK 508
D + + Q L + P + H +
Sbjct: 167 -ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 509 VIDRILYKLDDLV--RPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA--TMI 564
I I +L L+ +PY + +LV + V+ + A L+ ++
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLV------LLN-----VQNAKAW----NAFNLSCKILL 270
Query: 565 STMRPDIDNIDEYVRNTTAR--------------AFAVVASALGI-PSLLPFLKAGGVTP 609
+T R D TT +++ L P LP + P
Sbjct: 271 TT-R-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP 327
Query: 610 ------AA------TRWD 615
A WD
Sbjct: 328 RRLSIIAESIRDGLATWD 345
Score = 31.7 bits (71), Expect = 2.2
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 24/101 (23%)
Query: 173 EEKQKRVGL--GESGYFDSDIYDGGGKFEGYVKSIADDDFDYQASFNQNKRSGYTAPAAL 230
E+K + SG + + + Y I D+D Y+ N A+
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDNDPKYERLVN-----------AI 548
Query: 231 LNDIAQSEKDY--DPFADRRQKTVAEK-----EDEYRAIRR 264
L+ + + E++ + D + + + E+ ++ ++R
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 5e-08
Identities = 54/299 (18%), Positives = 95/299 (31%), Gaps = 107/299 (35%)
Query: 918 QYRKMVMESIEKTMSNLGAADI----DSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIV 973
Q + M M+ + + + A D+ D+ ++ IL + G
Sbjct: 1627 QEQGMGMDLYKTSKA---AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG----- 1678
Query: 974 NQLGKRVKP-YLPQICGT----------ILWRLNNKSAKVR-------------QQAADL 1009
+ GKR++ Y I T I +N S Q A
Sbjct: 1679 -EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 1010 ISRIAV--VMKT---CQEEKLM-GH-LGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMT 1062
+ A +K+ + GH LG EY AL ++ +V+
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLG---------EY--------AALASLADVM--- 1777
Query: 1063 KMTPPIKDLLPRLTPILKNRHEKVQENC-IDLVGR----IADRGPEYVSAREWMRICFEL 1117
I+ L+ + + R +Q D +GR + P V+A E
Sbjct: 1778 ----SIESLV-EV---VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS----FSQEA 1825
Query: 1118 LELLKAHKKAIRRAT------VNTFGY--------IA---KAIGPHDVLATLLNNLKVQ 1159
L+ + + + + T VN Y A +A+ D + +LN +K+Q
Sbjct: 1826 LQYVV---ERVGKRTGWLVEIVN---YNVENQQYVAAGDLRAL---DTVTNVLNFIKLQ 1875
Score = 55.4 bits (133), Expect = 2e-07
Identities = 90/536 (16%), Positives = 158/536 (29%), Gaps = 173/536 (32%)
Query: 196 GKFEGYVKSIADDDFDYQAS---------FNQNKRSGYTAPAALLNDI----AQSEKDYD 242
GKF GYV S+ + Q F G NDI A+ ++ D
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG--------NDIHALAAKLLQEND 113
Query: 243 PFADRRQKTVAEKEDEYRAIRRRMIISPERVDPFAEGHL--AAMTPE---------Q--I 289
+ ++ + A I++ D + L A Q
Sbjct: 114 TTLVKTKELIKNY---ITA----RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 290 QAYRWE--REIDERNRPLTDDELEAMFPPGYKVLQPPAGHLAAMT---PEQIQAYRWERE 344
Y +E R++ + L D ++ + L + + W
Sbjct: 167 DDY-FEELRDLYQTYHVLVGDLIKFSA----ETLSELIRTTLDAEKVFTQGLNILEWLE- 220
Query: 345 IDERNRPLTDDELEAMFP---PG--------YKVLQPPAGYIP--IRTPARKLTA----- 386
+ N P D + P P Y V G+ P +R+ + T
Sbjct: 221 -NPSNTP--DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 387 -TPTPIAGTPTG-FFIQQEDKTAKYM--------DNQPKGNLPFLKPEDAQYFDKLLVDV 436
T IA T + F K + + P +LP P + ++
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP---PSILEDS----LEN 330
Query: 437 DEDSLSP--------EEAKERKIMK----------LLLKIKNGT-------PP------- 464
+E SP +E + + K + + + NG PP
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 465 --MRKAALRQITDKAR-EFGA-GPLF-NQILPL-------LMSPTLEDQERHLLVKVIDR 512
+RKA D++R F F N+ LP+ L+ P + + L+ +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK---NN 447
Query: 513 ILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG---REIISNLAKAAGLATMISTMRP 569
+ + D+ +I V Y +G R + ++++ + I +
Sbjct: 448 VSFNAKDI------QIPV-----------YDTFDGSDLRVLSGSISER--IVDCIIRLPV 488
Query: 570 DIDNIDEYVRNTTARAFAVVA----SALGIPSLLPFLKAG---GVTPAATRWDETP 618
+ T +A ++ A G+ L K G V A T D P
Sbjct: 489 KWETT------TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL-DINP 537
Score = 43.5 bits (102), Expect = 6e-04
Identities = 83/524 (15%), Positives = 169/524 (32%), Gaps = 178/524 (33%)
Query: 875 AYLKRDYTLENG-IQKTIKGKPARL-VGASE-------IINRVVDDLKDENE-------- 917
AY R TL +G ++ + P AS+ I+ + ++E
Sbjct: 3 AYSTRPLTLSHGSLEHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 918 -QYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ--TTEDV-----VMLNGF 969
++ V +E S +G D Q+++ L F+ D+ +L
Sbjct: 62 GKFLGYVSSLVEP--SKVGQFD-------QVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 970 GTIVNQLGKRVKPYLP-QICGTILWRLNNKSA---KVRQQAADLISRIAVVMKTCQEEKL 1025
T + + + +K Y+ +I + + SA V + A L++ +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-------------I 159
Query: 1026 MGHLGVVLYEYLGE------EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 1079
G G +Y E Y ++G L IK L+ ++
Sbjct: 160 FGGQGNTD-DYFEELRDLYQTYH----VLVGDL---------------IKFSAETLSELI 199
Query: 1080 KNRH--EKVQENCIDLVGRIADRGPEYVSAREWMRIC---FELLELLK-AHKKAIRRATV 1133
+ EKV ++++ + P ++++ L+ +++ AH
Sbjct: 200 RTTLDAEKVFTQGLNILEWL--ENPSNTPDKDYLLSIPISCPLIGVIQLAH--------- 248
Query: 1134 NTFGYIAKAIG--PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEY 1191
+ AK +G P ++ + L + T + +V V A + +
Sbjct: 249 --YVVTAKLLGFTPGELRSYL-----------KGATGHSQGLVT------AVAIAETDSW 289
Query: 1192 RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMA 1251
+ V KA++ LF +IG + + ++
Sbjct: 290 E----SFFVSVRKAITVLF-FIG-------------VR--------CYEAYPNTSLPPSI 323
Query: 1252 LGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL-RVALGPVRILQYVLQGLF 1310
L ED+L + E P + M ++ L + + + L
Sbjct: 324 L-------EDSLENN---------EGVP----SPMLSISNLTQEQV--QDYVNKTNSHL- 360
Query: 1311 HPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMK--NVYLR 1352
PA K ++ SL G ++ ++S P+ + N+ LR
Sbjct: 361 -PAGK------QVEISLVNGAKNLVVSGPPQ---SLYGLNLTLR 394
Score = 42.3 bits (99), Expect = 0.001
Identities = 94/633 (14%), Positives = 171/633 (27%), Gaps = 218/633 (34%)
Query: 767 GNKAMAMATPTPGHLAAMTPEQIQAYRWEREIDERNRPLTDD-------ELEAMFPPGY- 818
G+ + PT A Q+Q ++ + + E D EL F GY
Sbjct: 14 GSLEHVLLVPTASFFIA---SQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFL-GYV 68
Query: 819 -KVLQPPAACFFIGCSMFAPTVWHLWIYTRSANANFYFGVTL-AFATSQIFLLTDLLFAY 876
+++P F L + + G + A A LL +
Sbjct: 69 SSLVEPSKVGQFDQV---------LNLCLTEFENCYLEGNDIHALAAK---LLQENDTTL 116
Query: 877 LKRDYTLEN-------GIQKTIKGKPARLVGASE--------------IINRVVDDLKDE 915
+K ++N + K + L A + ++L+D
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 916 NEQYRKMV---MESIEKTMSNLGAADID-SRLEEQLIDGILYAF--QEQTTED------- 962
+ Y +V ++ +T+S L +D ++ Q ++ + + T D
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSI 234
Query: 963 --------VVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIA 1014
V+ L + LG + G + L++ A
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG------------HSQGLVT--A 280
Query: 1015 VVMKTCQEEKLMGHLGVVLYEYL---G----EEYPEVLGSILGALKAIVNVIGMTKMTP- 1066
V + + L G E YP L+ + +P
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLEN-NEGVPSPM 338
Query: 1067 -PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 1125
I +L E+VQ+ V + P
Sbjct: 339 LSISNL----------TQEQVQD----YVNKTNSHLPA---------------------G 363
Query: 1126 KAIRRATVNTFGYIAKAI---GPHDVLATLLNNL-KVQ----ERQNRVCTTVAIAIVAET 1177
K + + VN AK + GP L L L K + Q+R+
Sbjct: 364 KQVEISLVNG----AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI------------ 407
Query: 1178 CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV--TPLLEDA--LM 1233
PF+ R + + + FL + + + LL A L+
Sbjct: 408 --PFSE--------RKLKFSNR--------FLP----------VASPFHSHLLVPASDLI 439
Query: 1234 DRDLVHRQTACATIKHMALGVYGF-------GCEDALTHLLNYV-------WPNIFETSP 1279
++DLV + K + + VY +++ + W +
Sbjct: 440 NKDLV-KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 1280 -H--------------LVQAFMDAVEGLRVALG 1297
H L D G+RV +
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDG-TGVRVIVA 530
Score = 42.0 bits (98), Expect = 0.002
Identities = 105/629 (16%), Positives = 180/629 (28%), Gaps = 214/629 (34%)
Query: 456 LKIKNGT-------PPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLE---DQERHL 505
L + +G+ P Q+ ++ FN+ILP PT D E
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQ---------FNKILP---EPTEGFAADDEPTT 56
Query: 506 LVKVIDRILYKLDDLVRP-YVHKILVVIEPLLID-EDYYARVEGREIISNLAKAAGLATM 563
+++ + L + LV P V + V+ L + E+ Y G +I + LA A +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDIHA-LA-----AKL 108
Query: 564 ISTMRPDIDNIDEYVRN-TTARAFAVVASALGIPSLLPFLKAGGVTPAATRWDETPGHPK 622
+ + E ++N TAR A S L +A
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRA------------------ 148
Query: 623 PGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDE------TPKT 676
G+A A G Q + + ++E T
Sbjct: 149 ----------------VGEGNAQLVAIFGG---------QGNTD-DYFEELRDLYQTYHV 182
Query: 677 ERETPGHSSG------WAETPKTDRAGPGG-DLIQETPTPGGVSSKRRSRWDETPQATPS 729
S T ++ G ++++ W E P TP
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE---------------WLENPSNTPD 227
Query: 730 GAMTPSAATPGGMTPSTP-----------ITPHV-GSTP---LMTPSGVTPTGNKAMAMA 774
S S P +T + G TP G T + + A
Sbjct: 228 KDYLLSIPI------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS-QGLVTA 280
Query: 775 TPTPGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQ-------PPAA- 826
A T WE + +F G + + PP+
Sbjct: 281 VAI-----AETDS------WESFFV-----SVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 827 --CFFIG----CSMFA---PTVWHLWIYTRSANANFYFGVTLAFA---TSQIFLLT---- 870
M + T + Y N++ G + + ++ +++
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 871 DL--LFAYLKRDYTLENGI-QKTIKG---KPA---R------------LVGASEIINRVV 909
L L L R +G+ Q I K R LV AS++I
Sbjct: 385 SLYGLNLTL-RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI---N 440
Query: 910 DDLKDENEQYR-KMVMESIEKTM--SNLGAADIDSRLEEQLIDGILY-------AFQEQT 959
DL N + K + + T S+L + + E+++D I+ Q +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 960 TEDVVM----LNGFGTIVNQL----GKRV 980
T + +G G + ++ G RV
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 38.9 bits (90), Expect = 0.014
Identities = 51/351 (14%), Positives = 97/351 (27%), Gaps = 149/351 (42%)
Query: 661 AQSSIRRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPT-----PGGVSSK 715
S ++ W+ ++T G S D++ P GG K
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSI--------------LDIVINNPVNLTIHFGGEKGK 1682
Query: 716 R-RSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMA 774
R R + AM G + I +
Sbjct: 1683 RIRENYS---------AMI-FETIVDGKLKTEKIFKEIN--------------------- 1711
Query: 775 TPTPGHLAAMTPEQIQAYRWEREIDERNR-----PLTDDELEAMFPPGY---KVLQ---- 822
E +Y + E + P A+ + L+
Sbjct: 1712 ------------EHSTSYTFRSEKGLLSATQFTQP-------ALTLMEKAAFEDLKSKGL 1752
Query: 823 PPAACFFIGCSMFAPTVWH-LWIYTRSANANFYFGVTLAFATSQIFLLTD---LLFAYLK 878
PA F G H L Y +A LA + + + + ++F
Sbjct: 1753 IPADATFAG---------HSLGEY--AA---------LA-SLADVMSIESLVEVVF---Y 1788
Query: 879 RDYTLENGIQKTIKGK---------PARLV--GASEIINRVVDDLKDE------------ 915
R T++ + + G+ P R+ + E + VV+ +
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 916 -NEQYRKMV-------MESIEKTMSNLGAADID-SRLEEQL----IDGILY 953
N+QY V ++++ ++ + ID L++ L ++G L+
Sbjct: 1849 ENQQY---VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 55.0 bits (132), Expect = 6e-08
Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 36/241 (14%)
Query: 912 LKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTT-----EDVVML 966
+ E EQ K + + + M + +++ L + D L
Sbjct: 23 QRGEVEQ-MKSCLRVLSQPMPPTAGEAEQAADQQEREG-ALELLADLCENMDNAADFCQL 80
Query: 967 NGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLM 1026
+G +V + L +A +R +AA LI + + QE+ L
Sbjct: 81 SGMHLLVGRY------------------LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG 122
Query: 1027 GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDL------LPRLTPILK 1080
L L + + + + AL AI + + L ++
Sbjct: 123 LGALRKLLRLLDRDACDTV--RVKALFAISC---LVREQEAGLLQFLRLDGFSVLMRAMQ 177
Query: 1081 NRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 1140
+ +K++ L+ + PE+ M + +L+ L++ + +
Sbjct: 178 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237
Query: 1141 K 1141
Sbjct: 238 T 238
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport,
exportin, RAN GTPase, protein transport; HET: GTP; 2.0A
{Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A
2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 55.4 bits (133), Expect = 9e-08
Identities = 49/376 (13%), Positives = 116/376 (30%), Gaps = 27/376 (7%)
Query: 900 GASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQT 959
+ + ++ L ++ Q + + +S ID ++ ++ ++ +E
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 960 TEDVV--MLNGFGTIVNQLGKRVKPYLPQ-ICGTILWRLNNKSAKVRQQAADLISRIAVV 1016
E + I + + K + + L S +V++QA + +A
Sbjct: 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD 203
Query: 1017 MKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPR 1074
++ + + + P ++ + L + + LP
Sbjct: 204 STDYRD--YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 261
Query: 1075 LTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVN 1134
L ++ + + + + ++D E + A +RI L+ELL ++ +
Sbjct: 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 321
Query: 1135 TFGYIA-------KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT----- 1182
G I + + VL L L + + I+ + +
Sbjct: 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 381
Query: 1183 --VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA-----VTPLLEDALMDR 1235
++P L+ V E + A+S G D I L D L
Sbjct: 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSG-GLQRPDIIRYLVSQGCIKPLCDLLEIA 440
Query: 1236 DLVHRQTACATIKHMA 1251
D + ++++
Sbjct: 441 DNRIIEVTLDALENIL 456
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 53.5 bits (128), Expect = 1e-07
Identities = 40/286 (13%), Positives = 94/286 (32%), Gaps = 65/286 (22%)
Query: 893 GKPARLVGASEIINRVVDD----LKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLI 948
G L+ +I++++ D L+++ RK +E +EK +++ +++ L+
Sbjct: 1 GSHMDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTD--HPKLENGEYGALV 58
Query: 949 DGILYAFQEQTTEDVVM--LNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQA 1006
+ + + +V + L KR Y
Sbjct: 59 SALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV------------------ 100
Query: 1007 ADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTP 1066
L E E+ P V+ ++ A+ AI +
Sbjct: 101 ------------------------PSLLEKFKEKKPNVVTALREAIDAIYA-------ST 129
Query: 1067 PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLELLKAHK 1125
++ + L N++ V+ + R R ++ ++ + L++ L
Sbjct: 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD 189
Query: 1126 KAIRRATVNTFGYIAKAIGPHDVLATLLNNL------KVQERQNRV 1165
+R ++ G + K +G + LL ++ K++E Q +
Sbjct: 190 PTVRDSSAEALGTLIKLMGD-KAVTPLLADVDPLKMAKIKECQEKA 234
Score = 36.1 bits (83), Expect = 0.048
Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 14/166 (8%)
Query: 450 KIMKLLLKI--KNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLV 507
++ L K+ K+ + A + + A+ G F+ + P+L ++ +
Sbjct: 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAK--GLAKRFSNYASACV-PSLLEKFKEKKP 112
Query: 508 KVIDRILYKLDDLVR-PYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMIST 566
V+ + +D + + I L +++ + E I+ +
Sbjct: 113 NVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172
Query: 567 MRPDIDNI--------DEYVRNTTARAFAVVASALGIPSLLPFLKA 604
+ + D VR+++A A + +G ++ P L
Sbjct: 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import,
heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP:
a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Length = 876
Score = 54.5 bits (130), Expect = 2e-07
Identities = 73/467 (15%), Positives = 151/467 (32%), Gaps = 37/467 (7%)
Query: 903 EIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTED 962
+ + + ++ D++ K + + + L I + + +
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL--PFIKEHIKNPDWRYRDA 385
Query: 963 VVMLNGFGTIVNQLGK-RVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQ 1021
VM FG I+ ++KP + Q T++ + + S VR AA + RI ++
Sbjct: 386 AVMA--FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443
Query: 1022 EEKLMGHLGVVLYEYLG--EEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPIL 1079
+ +L +L + P V ++ A ++ + D T L
Sbjct: 444 INDV--YLAPLLQCLIEGLSAEPRVASNVCWAFSSL--AEAAYEAADVADDQEEPATYCL 499
Query: 1080 KNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFE-LLELLKAHKKAIRRATVNTF-- 1136
+ E + + ++ R S+ +E L+E++K K A T
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSS------AYESLMEIVKNSAKDCYPAVQKTTLV 553
Query: 1137 --GYIAKAIGPHDVLATLLNNLKVQERQNRVCTT-------VAIAIVAETCSPFTVLPAL 1187
+ + + + + + ++ + Q+ +C T V +
Sbjct: 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLR 613
Query: 1188 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH-RQTACAT 1246
M + VQ L A+S L E +G Y+ A P L L + A
Sbjct: 614 MFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGL 673
Query: 1247 IKHMALGVYGFG---CEDALTHLLNYVWPNIFETS--PHLVQAFMDAVEGLRVALGPVRI 1301
+ + + C++ + LL + S P ++ F D +
Sbjct: 674 VGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK--Y 731
Query: 1302 LQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKN 1348
L+ VL L ++ D +++ + AY I +K
Sbjct: 732 LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKG 778
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 53.3 bits (127), Expect = 5e-07
Identities = 59/469 (12%), Positives = 135/469 (28%), Gaps = 92/469 (19%)
Query: 904 IINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDV 963
++ V + + E+ + + + K MS EQ + + A + + V
Sbjct: 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSK--YYTFMKPYMEQALYALTIATMKSPNDKV 282
Query: 964 V-------------------MLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAK--- 1001
L F Q + + +L L ++
Sbjct: 283 ASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED 342
Query: 1002 ----VRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN 1057
V A + A ++ + + + + + + + A +I++
Sbjct: 343 DDWNVSMSAGACLQLFA----QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398
Query: 1058 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFEL 1117
+ T + LP + ++ ++ +V+E +GRIAD E + ++ + +
Sbjct: 399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA 458
Query: 1118 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAET 1177
L L ++ KV + + + T
Sbjct: 459 C------------------------------LIGLQDHPKVATNCSWTIINLVEQLAEAT 488
Query: 1178 CSPFT-----VLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED 1230
SP ++ L+ E N + AL+ + EY + + +++ + D
Sbjct: 489 PSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMD 548
Query: 1231 ALM------------DRDLVHRQTACATIKHMALGVYGFG--CEDALTHLLNYVWPNIFE 1276
L + ++ + +A + E L+ + + E
Sbjct: 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFF-RLLE 607
Query: 1277 T--SPHLVQAFMDAVEGLRVALGPV------RILQYVLQGLFHPARKVR 1317
S + A+ L +LG Y+L+ L V
Sbjct: 608 KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Score = 52.1 bits (124), Expect = 1e-06
Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 31/289 (10%)
Query: 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE 961
S N++ + ++ + ++ + + + + L+ +++ +
Sbjct: 555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKDSA 612
Query: 962 DV--VMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKT 1019
+ + + LGK + YL +L LN + V A I+ I+ ++
Sbjct: 613 FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672
Query: 1020 CQEEKLMGHLGVVLYEYLGEE--YPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTP 1077
+ + VL + + E+ ++L I + IG P + D++
Sbjct: 673 -DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG-ADFIPYLNDIMALCVA 730
Query: 1078 ILKNRHEK-----------VQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLKAHK 1125
+ E V E +D I + A ++ F+ + +
Sbjct: 731 AQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDP 790
Query: 1126 K-----AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE-----RQNR 1164
+ A RA V G IA P + V + R +
Sbjct: 791 QLYSEDATSRAAVGLIGDIAAMF-PDGSIKQFYGQDWVIDYIKRTRSGQ 838
Score = 46.7 bits (110), Expect = 6e-05
Identities = 43/371 (11%), Positives = 105/371 (28%), Gaps = 55/371 (14%)
Query: 986 QICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVL 1045
QI L L + ++ AA LI+ IA L ++ + G E PE +
Sbjct: 95 QIKTNALTALVSIEPRIANAAAQLIAAIA---DIELPHGAWPELMKIMVDNTGAEQPENV 151
Query: 1046 -GSILGALKAIVNVIG--MTKMTPPIKDLLPRLTPILKNRHE--KVQENCIDLVGRIADR 1100
+ L AL + + ++L + ++ V+ ++ +
Sbjct: 152 KRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL-- 209
Query: 1101 GPEYVSAREWMRICFE-----LLELLKAHKKAIRRATVNTFGYIA----KAIGPHDVLAT 1151
++ + E +A ++ A I + P+ +
Sbjct: 210 --IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPY--MEQ 265
Query: 1152 LLNNLKVQERQ--NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFL 1209
L L + + N ++ + + C + + ++ L N L ++ +
Sbjct: 266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDV 325
Query: 1210 FEYIGEM------------------------------GKDYIYAVTPLLEDALMDRDLVH 1239
+ + G + V +E + + +
Sbjct: 326 VPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385
Query: 1240 RQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV 1299
R+ A + G + L + + + S + + + + ++
Sbjct: 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES 445
Query: 1300 RILQYVLQGLF 1310
Q L G+
Sbjct: 446 IDPQQHLPGVV 456
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear
localisation SIGN recognition, chloride intracellular
channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A
3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I
1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C
3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 50.0 bits (119), Expect = 4e-06
Identities = 48/400 (12%), Positives = 116/400 (29%), Gaps = 26/400 (6%)
Query: 877 LKRDYTLENGIQKTIKGKPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGA 936
+ + K + + + + +V + N + + ++ K +S
Sbjct: 31 MDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQ 90
Query: 937 ADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVN----QLGKRVKPYLPQICGTIL 992
ID+ + LI + + + + N + +
Sbjct: 91 PPIDNIIRAGLIPKFVSFLGKTDCSPI-QFESAWALTNIASGTSEQTKAVVDGGAIPAFI 149
Query: 993 WRLNNKSAKVRQQAADLISRIAVVMKTCQ----EEKLMGHLGVVLYEYLGEEYP-EVLGS 1047
L + A + +QA + IA + + + L +L L +
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209
Query: 1048 ILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSA 1107
+ L + ++ +LP L +L + +V + + + D E +
Sbjct: 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM 269
Query: 1108 REWMRICFELLELLKAHKKAIRRATVNTFGYIA-------KAIGPHDVLATLLNNLKVQE 1160
+ +L++LL A + I + G I + + LA + L +
Sbjct: 270 VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK 329
Query: 1161 RQNRVCTTVAIAIVAETCSPFT-------VLPALMNEYRVPELNVQNGVLKALSFLFEYI 1213
+ T ++ + ++P L+ + Q A++
Sbjct: 330 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389
Query: 1214 GEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMA 1251
Y+ + L + L +D Q I ++
Sbjct: 390 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo sapiens}
PDB: 3tj3_A
Length = 450
Score = 48.3 bits (115), Expect = 1e-05
Identities = 57/358 (15%), Positives = 114/358 (31%), Gaps = 39/358 (10%)
Query: 995 LNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLG-EEYPEVLGSILGA 1051
+ +KS + + A ++ ++++ GVV E+L +E +
Sbjct: 29 IFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWV 88
Query: 1052 LKAIVNVIGMTKMTPPIKD--LLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE 1109
L I + G + T + +P +L + E VQE + +G IA R+
Sbjct: 89 LTNIAS--GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC---RD 143
Query: 1110 WMRIC---FELLELLKAHKK-AIRRATVNTFGYIAK-------AIGPHDVLATLLNNLKV 1158
++ C LL+L + + R V + + L L L V
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 203
Query: 1159 QERQNRVCTTVAIAIVAETCSPFT-------VLPALMNEYRVPELNVQNGVLKALSFLFE 1211
+ A++ +++ + V L+ + V + L+A+ +
Sbjct: 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263
Query: 1212 YIGEMGKDYIYA--VTPLLEDALMDRDLVHRQTACATIKHMALG-------VYGFGCEDA 1262
++ I L L ++ AC TI ++ G V A
Sbjct: 264 G-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 322
Query: 1263 LTHLL-NYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDV 1319
L +L + E + + A L + ++ + L K+ V
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQV 380
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 45.9 bits (109), Expect = 4e-05
Identities = 26/200 (13%), Positives = 53/200 (26%), Gaps = 30/200 (15%)
Query: 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRA 1131
L +L + + + + ++ + V +E R
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLRGG--QDAVRL---------AIEFCSDKNYIRRDI 73
Query: 1132 TVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI----VAETCSPFTVLPAL 1187
G I D + +LNN+ + ++ V T + ++
Sbjct: 74 GAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQS 133
Query: 1188 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATI 1247
NV+ A+ + A PLL + L D + R A
Sbjct: 134 QITAFDKSTNVRRATAFAI-------SVINDK---ATIPLLINLLKDPNGDVRNWAAF-- 181
Query: 1248 KHMALGVYGFGCEDALTHLL 1267
A+ + + D +
Sbjct: 182 ---AININKYDNSDIRDCFV 198
Score = 38.2 bits (89), Expect = 0.013
Identities = 46/280 (16%), Positives = 88/280 (31%), Gaps = 57/280 (20%)
Query: 899 VGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQ 958
G + + ++ D+N R + LG I + E+ + + +
Sbjct: 50 RGGQDAVRLAIEFCSDKNYIRRDIGAFI-------LGQIKICKKCEDNVFNILNNMALND 102
Query: 959 TTEDVVMLNGFGTIVNQLGKRVKP---YLPQICGTILWRLNNKSAKVRQQAADLISRIAV 1015
+ V T + +R K Y P+I +KS VR+ A IS I
Sbjct: 103 KSACVRA-----TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI-- 155
Query: 1016 VMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLP 1073
+ L L + +V A+ + K D+
Sbjct: 156 -----------NDKATIPLLINLLKDPNGDVRNWAAFAI-------NINKYDNS--DIRD 195
Query: 1074 RLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATV 1133
+L++++E+V+ I + D+ R+ L + LK K + +
Sbjct: 196 CFVEMLQDKNEEVRIEAIIGLSYRKDK-----------RVLSVLCDELK--KNTVYDDII 242
Query: 1134 NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI 1173
G +G +L L L + N + T+ +
Sbjct: 243 EAAG----ELGDKTLLPVLDTMLY-KFDDNEIITSAIDKL 277
Score = 34.8 bits (80), Expect = 0.16
Identities = 33/268 (12%), Positives = 82/268 (30%), Gaps = 60/268 (22%)
Query: 995 LNNKSAKVRQQAADLISRI------AVVMKTCQEE---------KLMGHLG--------- 1030
L++ ++ R +A ++ + ++ C ++ ++G +
Sbjct: 32 LDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV 91
Query: 1031 --VVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQE 1088
++ L ++ V + + + K ++ + ++ V+
Sbjct: 92 FNILNNMALNDKSACVRATAIESTAQRCK-----KNPIYSPKIVEQSQITAFDKSTNVRR 146
Query: 1089 NCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 1148
+ I D + L+ LLK +R D+
Sbjct: 147 ATAFAISVIND--KATIPL---------LINLLKDPNGDVRNWAAFAININ--KYDNSDI 193
Query: 1149 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSF 1208
+ L+ + + V I + + VL L +E + V + +++A
Sbjct: 194 RDCFVEMLQDKNEE--VRIEAIIGL-SYRKDK-RVLSVLCDELKKN--TVYDDIIEAA-- 245
Query: 1209 LFEYIGEMGKDYIYAVTPLLEDALMDRD 1236
GE+G + P+L+ L D
Sbjct: 246 -----GELGDK---TLLPVLDTMLYKFD 265
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A*
3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 44.0 bits (104), Expect = 3e-04
Identities = 50/305 (16%), Positives = 89/305 (29%), Gaps = 59/305 (19%)
Query: 995 LNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAL 1052
L + S ++ Q + ++ K G G++ L + LG + V+ G L
Sbjct: 236 LTDPSQRLVQNCLWTLRNLS-----DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290
Query: 1053 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGRIADRGPEYVSAREW 1110
+ KM + L + E + E I + + R E A+
Sbjct: 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 350
Query: 1111 MRICF---ELLELLK-AHKKAIRRATVNTFGYIA------KAIGPHDVLATLLN-----N 1155
+R+ + +++LL + +ATV +A + + L+ +
Sbjct: 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410
Query: 1156 LKVQERQNRVCTTVAIA-------IVAETCSPFT----------------VLPALMNEYR 1192
Q R + T IV +P +
Sbjct: 411 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 470
Query: 1193 VPELNVQNGVLKALSFL------FEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT 1246
P N+Q L L E I G T L + L R+ A A
Sbjct: 471 SPIENIQRVAAGVLCELAQDKEAAEAIEAEG------ATAPLTELLHSRNEGVATYAAAV 524
Query: 1247 IKHMA 1251
+ M+
Sbjct: 525 LFRMS 529
Score = 42.8 bits (101), Expect = 8e-04
Identities = 36/289 (12%), Positives = 88/289 (30%), Gaps = 49/289 (16%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGALK 1053
N + + A + ++ + + G + L + LG VL + L
Sbjct: 70 NTNDVETARCTAGTLHNLS---HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 1054 AIVNVIGMTKMTPPIKDL------LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSA 1107
+ K L ++ +L + K D + +A E
Sbjct: 127 NL------LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES--- 177
Query: 1108 REWMRIC---FELLELLKAH-KKAIRRATVNTFGYIA------KAIGPHDVLATLLNNLK 1157
+ + L+ +++ + + + T ++ AI + L +L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237
Query: 1158 VQERQNRVCTTVAIAIVAETCSPFT----VLPALMNEYRVPELNVQNGVLKALSFL---- 1209
++ + +++ + +L L+ ++NV LS L
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297
Query: 1210 ---FEYIGEMGKDYIYAVTPLLEDALM--DRDLVHRQTACATIKHMALG 1253
+ ++G + L+ L DR+ + + A ++H+
Sbjct: 298 YKNKMMVCQVG-----GIEALVRTVLRAGDREDI-TEPAICALRHLTSR 340
Score = 33.6 bits (77), Expect = 0.48
Identities = 30/220 (13%), Positives = 63/220 (28%), Gaps = 24/220 (10%)
Query: 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA-IRR 1130
+P LT +L + + V +V +++ + + ++ ++ ++ R
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 1131 ATVNTFGYIAK------AIGPHDVLATLLNNLK--VQERQNRVCTTVA-IAIVAETCSPF 1181
T T ++ AI + L+ L V TT+ + + E
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 1182 TV----LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY---AVTPLLEDALMD 1234
L ++ + L L Y + K I L+
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTY 197
Query: 1235 RDLVHRQTACATIKHMALG------VYGFGCEDALTHLLN 1268
T +K +++ + G AL L
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 42.9 bits (100), Expect = 5e-04
Identities = 23/183 (12%), Positives = 42/183 (22%), Gaps = 8/183 (4%)
Query: 607 VTPAATRWDETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPS-HDKAQSSI 665
+ P + + + P E + + Q+ +
Sbjct: 184 QQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKM 243
Query: 666 RRNRWDETPKTERETPGHSSGWAETPKTDRAGPG--GDLIQETPTPGGVSSKRRSRWDET 723
+ ++ +G + G G++ + PG +
Sbjct: 244 VLETFGGDGHARGDSVSQGTG-LAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPG----R 298
Query: 724 PQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAA 783
P+ +G P PG P P GS P P P PG
Sbjct: 299 PEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGT 358
Query: 784 MTP 786
Sbjct: 359 WNT 361
Score = 41.0 bits (95), Expect = 0.003
Identities = 33/216 (15%), Positives = 50/216 (23%), Gaps = 39/216 (18%)
Query: 567 MRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRWDETPGHPKPGAE 626
M + ++ A + AL + R D
Sbjct: 210 MSTITGPVPREFKSQLQEA-PLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPG 268
Query: 627 TPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDETPKTERETPGHSS- 685
+P ++ + + PG PG++ E PG
Sbjct: 269 SPRKPGTSSIGNVNPGSYGPGSSGTWNPGRP--------------EPGSAGTWNPGRPEP 314
Query: 686 GWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPS 745
G A T R PG T PG P+ +G P PG
Sbjct: 315 GSAGTWNPGRPEPGSA---GTWNPG------------RPEPGSAGTWNPGRPEPGSAGTW 359
Query: 746 TPITPHVGST-PLMTPSGVTPTGNKAMAMATPTPGH 780
+ S P + G + P G
Sbjct: 360 NTGSSGSSSFRPDSSGHGNIRPSS-------PDWGT 388
Score = 39.8 bits (92), Expect = 0.005
Identities = 26/140 (18%), Positives = 39/140 (27%), Gaps = 5/140 (3%)
Query: 604 AGGVTPAATRWDETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQS 663
A G + + KPG + G + G PG PG
Sbjct: 254 ARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGT----WNP 309
Query: 664 SIRRNRWDETPKTERETPGHSSGWA-ETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDE 722
T R PG + W P+ AG E + G ++
Sbjct: 310 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSF 369
Query: 723 TPQATPSGAMTPSAATPGGM 742
P ++ G + PS+ G
Sbjct: 370 RPDSSGHGNIRPSSPDWGTF 389
Score = 30.6 bits (68), Expect = 4.2
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 617 TPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDK 660
PG P+PG+ T S+ P + G P +
Sbjct: 347 NPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGTFR 390
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 42.1 bits (98), Expect = 7e-04
Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 12/175 (6%)
Query: 1071 LLPRLTPILKNRHEKVQENCIDLVGRIADR---GPEYVSAREWMRICFELLELLKAHKKA 1127
LL T + ++L I + +S E LL K
Sbjct: 88 LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDN 147
Query: 1128 IRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRV---CTTVAIAIV----AETCSP 1180
+R + + ++ +GP + LL+ LK + R C V +
Sbjct: 148 MRTSVRDIVNVLSDVVGPLKMTPMLLDALK--SKNARQRSECLLVIEYYITNAGISPLKS 205
Query: 1181 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 1235
+V + ++NV+N + L F++ G+ + + + +R
Sbjct: 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEER 260
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 41.5 bits (98), Expect = 0.001
Identities = 49/272 (18%), Positives = 88/272 (32%), Gaps = 57/272 (20%)
Query: 995 LNNKSAKVRQQAADLISRIAVVMKTCQEEK-LMGHLGVV--LYEYLGEEYPEVLGSILGA 1051
LN+ + + A S+I E+ + G + L + L ++L L A
Sbjct: 21 LNSDDMQEQLSATRKFSQIL---SDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77
Query: 1052 LKAIVNVIGMTKMTPPIKD--LLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSARE 1109
L I G + + D LP L +L + +E++ + + + IA G E + A
Sbjct: 78 LSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA-- 133
Query: 1110 WMRICFE-----LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNR 1164
+ L++LL + + I + + IA
Sbjct: 134 ---VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ------------------ 172
Query: 1165 VCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 1224
A++ LPAL+ P + L ALS I G + AV
Sbjct: 173 -----IQAVIDAGA-----LPALVQLLSSPNEQILQEALWALS----NIASGGNEQKQAV 218
Query: 1225 T-----PLLEDALMDRDLVHRQTACATIKHMA 1251
LE + ++ A ++ +
Sbjct: 219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 41.4 bits (96), Expect = 0.002
Identities = 42/343 (12%), Positives = 111/343 (32%), Gaps = 47/343 (13%)
Query: 914 DENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIV 973
+ E ++ +E+I ++ + +++ I+ +++ + V L ++
Sbjct: 141 NSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199
Query: 974 NQLG--------KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKL 1025
N L + + ++ Q+ + +VR A + +I + + +
Sbjct: 200 NSLEFTKANFDKESERHFIMQV---VCEATQCPDTRVRVAALQNLVKIM----SLYYQYM 252
Query: 1026 MGHLGVVLYEYL----GEEYPEVLGSILGALKAIVNV---IGMTKMTPPIKDLLPRLTPI 1078
++G L+ + EV + + + + + + P T
Sbjct: 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS- 311
Query: 1079 LKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 1138
K + + + ++ + + E +W + L
Sbjct: 312 -KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL---------MLLATCCE- 360
Query: 1139 IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT-------VLPALMNEY 1191
I PH VL + ++K + + R +A + E P +P L+
Sbjct: 361 --DDIVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417
Query: 1192 RVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAVTPLLEDAL 1232
+ P + V++ + + E + E + Y+ + L + L
Sbjct: 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460
Score = 37.5 bits (86), Expect = 0.026
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 1006 AADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMT 1065
A + +A TC E+ ++ H+ + E++ + + A I+ +++
Sbjct: 348 AGVCLMLLA----TCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 1066 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREW-MRICFELLELLKA 1123
P + +P L ++K+ V++ VGRI + PE + + L+E L A
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA 462
Score = 31.7 bits (71), Expect = 1.9
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 978 KRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYL 1037
++KP + Q T++ + + S VR AA + RI ++ YL
Sbjct: 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND----------VYL 449
Query: 1038 GEEYPEVLGSILGALKA 1054
+L ++ L A
Sbjct: 450 ----APLLQCLIEGLSA 462
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 41.2 bits (96), Expect = 0.003
Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 42/281 (14%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGALK 1053
N + + + + ++ + + G + L LG VL + L
Sbjct: 203 NTNDVETARCTSGTLHNLS---HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259
Query: 1054 AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRI 1113
++ KM + L ++ +L + K D + +A E
Sbjct: 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 319
Query: 1114 CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI 1173
L+ +++ + T + +L L VC++ AI
Sbjct: 320 PQALVNIMRTYTYEKLLWTT----------------SRVLKVLS-------VCSSNKPAI 356
Query: 1174 VAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM 1233
V + AL P + L L L + ++ + + L L
Sbjct: 357 VEA-----GGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLG 409
Query: 1234 DRDLVHRQTACATIKHMALG-------VYGFGCEDALTHLL 1267
D+ A + ++ V G +AL +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450
Score = 33.9 bits (77), Expect = 0.48
Identities = 22/191 (11%), Positives = 58/191 (30%), Gaps = 22/191 (11%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEK-LMGHLGVV--LYEYLGEEYPEVLGSILGAL 1052
K+ + ++ ++V C K + G + L +L + ++ + L
Sbjct: 329 TYTYEKLLWTTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQN---CL 381
Query: 1053 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMR 1112
+ N+ ++ LL L +L + V ++ + + +
Sbjct: 382 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 441
Query: 1113 ICFELLELLKAH--KKAIRRATVNTFGYIA----------KAIGPHDVLATLLNNLKVQE 1160
L+ + ++ I + ++ A+ H L ++ L
Sbjct: 442 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501
Query: 1161 RQNRVCTTVAI 1171
+ TV +
Sbjct: 502 HWPLIKATVGL 512
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de
novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 39.2 bits (92), Expect = 0.004
Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 23/199 (11%)
Query: 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRA 1131
LP++ L + ++ ++ + + +IA G E + A L++LL + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 1132 TVNTFGYIA-------KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV- 1183
+ IA +A+ L L+ L Q A++ +A +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 1184 ------LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT-----PLLEDAL 1232
LPAL+ P + L ALS + G + AV LE
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQAVKEAGALEKLEQLQ 189
Query: 1233 MDRDLVHRQTACATIKHMA 1251
+ ++ A ++ +
Sbjct: 190 SHENEKIQKEAQEALEKLQ 208
Score = 31.8 bits (73), Expect = 1.1
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 990 TILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGS 1047
++ +LN+ + Q A +S+IA ++ + + G + L + L ++L
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 1048 ILGALKAIVNVIGMTKMTPPIKD--LLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYV 1105
L AL I G + + D LP L +L + +E++ + + + IA G E +
Sbjct: 74 ALWALSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 1106 SA 1107
A
Sbjct: 132 QA 133
Score = 30.7 bits (70), Expect = 2.3
Identities = 13/71 (18%), Positives = 28/71 (39%)
Query: 1071 LLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRR 1130
LP L +L + +E++ + + + IA G E A + +L +L + I++
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 198
Query: 1131 ATVNTFGYIAK 1141
+
Sbjct: 199 EAQEALEKLQS 209
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 40.4 bits (94), Expect = 0.005
Identities = 24/139 (17%), Positives = 34/139 (24%), Gaps = 21/139 (15%)
Query: 623 PGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDETPKTERETPG 682
A P+ GA TP +P D +P +P
Sbjct: 1457 MNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVG--------SPDAAAFSPL 1508
Query: 683 HSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGM 742
G G G +P G S P T + S
Sbjct: 1509 VQGGSEGREGFGDYGLLGAA---SPYKGVQS----------PGYTSPFSSAMSPGYGLTS 1555
Query: 743 TPSTPITPHVGSTPLMTPS 761
+P +P ++P PS
Sbjct: 1556 PSYSPSSPGYSTSPAYMPS 1574
Score = 35.1 bits (80), Expect = 0.22
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 6/97 (6%)
Query: 701 DLIQETPTPGGVSSKRRSRWDE----TPQATPSGAMTPSAATPGGMTPSTPITPHVGS-T 755
D+ + S P GA TP +P + +P + +
Sbjct: 1448 DIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSP-MVDSGFVGSPDAAAFS 1506
Query: 756 PLMTPSGVTPTGNKAMAMATPTPGHLAAMTPEQIQAY 792
PL+ G + + +P +
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPF 1543
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 39.9 bits (93), Expect = 0.006
Identities = 36/286 (12%), Positives = 86/286 (30%), Gaps = 43/286 (15%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGALK 1053
N + + A + ++ + + G + L + LG VL + L
Sbjct: 67 NTNDVETARCTAGTLHNLS---HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123
Query: 1054 AIVNVIGMTKMTPPIKDL------LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSA 1107
+ K L ++ +L + K D + +A E
Sbjct: 124 NL------LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177
Query: 1108 REWMRICFELLELLKAH-KKAIRRATVNTFGYIA------KAIGPHDVLATLLNNLKVQE 1160
L+ +++ + + + T ++ AI + L +L
Sbjct: 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 237
Query: 1161 RQNRVCTTVAIAIVAETCSPFT----VLPALMNEYRVPELNVQNGVLKALSFLF------ 1210
++ + +++ + +L L+ ++NV LS L
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297
Query: 1211 -EYIGEMGKDYIYAVTPLLEDALM--DRDLVHRQTACATIKHMALG 1253
+ ++G + L+ L DR+ + + A ++H+
Sbjct: 298 KMMVCQVG-----GIEALVRTVLRAGDREDI-TEPAICALRHLTSR 337
Score = 36.1 bits (83), Expect = 0.10
Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 30/195 (15%)
Query: 996 NNKSAKVRQQAADLISRIAVVMKTCQEEK-LMGHLGVV--LYEYLGEEYPEVLGSILGAL 1052
K+ + ++ ++V C K + G + L +L + ++ + L L
Sbjct: 193 TYTYEKLLWTTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248
Query: 1053 KAI----VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAR 1108
+ + GM + LL L +L + V ++ + +
Sbjct: 249 RNLSDAATKQEGM-------EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301
Query: 1109 EWMRICFELLELLKAH--KKAIRRATVNTFGYIA----------KAIGPHDVLATLLNNL 1156
+ L+ + ++ I + ++ A+ H L ++ L
Sbjct: 302 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361
Query: 1157 KVQERQNRVCTTVAI 1171
+ TV +
Sbjct: 362 HPPSHWPLIKATVGL 376
Score = 34.5 bits (79), Expect = 0.30
Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 28/222 (12%)
Query: 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRR 1130
+P LT +L + + V +V +++ + + ++ ++ ++ + R
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 1131 ATVNTFGYIAK------AIGPHDVLATLLNNLKVQ--ERQNRVCTTVA-IAIVAETCSPF 1181
T T ++ AI + L+ L TT+ + + E
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 1182 TV----LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY---AVTPLLEDALMD 1234
L ++ + L L Y + K I L+ +M
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVN--IMR 192
Query: 1235 R--DLVHRQTACATIKHMALG------VYGFGCEDALTHLLN 1268
T +K +++ + G AL L
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 234
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 37.7 bits (88), Expect = 0.013
Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 47/209 (22%)
Query: 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 1175
++ L+ +RRA G I G + L+ LK ++ R A+ +
Sbjct: 18 MYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKALKDEDAWVRRAAADALGQIG 73
Query: 1176 ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 1235
+ + L+ + + V+ AL G++G + L AL D
Sbjct: 74 DE----RAVEPLIKALKDEDGWVRQSAAVAL-------GQIGDE---RAVEPLIKALKDE 119
Query: 1236 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 1295
D R A ALG G E A+ L++A D +R +
Sbjct: 120 DWFVRIAAA-----FALG--EIGDERAV---------------EPLIKALKDEDGWVRQS 157
Query: 1296 -------LGPVRILQYVLQGLFHPARKVR 1317
+G R+ + + R
Sbjct: 158 AADALGEIGGERVRAAMEKLAETGTGFAR 186
Score = 31.9 bits (73), Expect = 0.99
Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 45/214 (21%)
Query: 995 LNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAL 1052
L + S VR+ AA + + +G V L + L +E V + AL
Sbjct: 23 LQDDSYYVRRAAAYALGK-------------IGDERAVEPLIKALKDEDAWVRRAAADAL 69
Query: 1053 KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMR 1112
I + + + L LK+ V+++ +G+I D V
Sbjct: 70 GQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--ERAVEP----- 111
Query: 1113 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIA 1172
L++ LK +R A G IG + L+ LK ++ V + A A
Sbjct: 112 ----LIKALKDEDWFVRIAAAFALG----EIGDERAVEPLIKALKDEDGW--VRQSAADA 161
Query: 1173 IVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL 1206
+ E V A+ + + L
Sbjct: 162 L-GEIGGE-RVRAAMEKLAETGTGFARKVAVNYL 193
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 37.0 bits (86), Expect = 0.021
Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 47/209 (22%)
Query: 1116 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 1175
++ L+ +RRA G I G + L+ LK ++ R A+ +
Sbjct: 23 MYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKALKDEDAWVRRAAADALGQIG 78
Query: 1176 ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 1235
+ + L+ + + V+ AL G++G + L AL D
Sbjct: 79 DE----RAVEPLIKALKDEDGWVRQSAAVAL-------GQIGDE---RAVEPLIKALKDE 124
Query: 1236 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 1295
D R A ALG G E A+ L++A D +R +
Sbjct: 125 DWFVRIAAA-----FALG--EIGDERAV---------------EPLIKALKDEDGWVRQS 162
Query: 1296 -------LGPVRILQYVLQGLFHPARKVR 1317
+G R+ + + R
Sbjct: 163 AADALGEIGGERVRAAMEKLAETGTGFAR 191
Score = 32.0 bits (73), Expect = 1.0
Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 45/215 (20%)
Query: 994 RLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVV--LYEYLGEEYPEVLGSILGA 1051
L + S VR+ AA + + +G V L + L +E V + A
Sbjct: 27 NLQDDSYYVRRAAAYALGK-------------IGDERAVEPLIKALKDEDAWVRRAAADA 73
Query: 1052 LKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWM 1111
L I + + L LK+ V+++ +G+I D V
Sbjct: 74 LGQI-----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD--ERAVEP---- 116
Query: 1112 RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI 1171
L++ LK +R A G IG + L+ LK ++ V + A
Sbjct: 117 -----LIKALKDEDWFVRIAAAFALG----EIGDERAVEPLIKALKDEDGW--VRQSAAD 165
Query: 1172 AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL 1206
A+ E V A+ + + L
Sbjct: 166 AL-GEIGGE-RVRAAMEKLAETGTGFARKVAVNYL 198
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 33.8 bits (78), Expect = 0.10
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 26/140 (18%)
Query: 1117 LLELLKAHKKAIRRATVNTFGYI-AKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 1175
+ K +RR + +A P L L+N + R A I+
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGDEAFEP---LLESLSNEDWRIRGA------AAWIIG 67
Query: 1176 ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 1235
+ L+ V++G ++L ++G + V +E
Sbjct: 68 NFQDE-RAVEPLIKLLEDDSGFVRSGAARSL-------EQIGGE---RVRAAMEKLAETG 116
Query: 1236 DLVHRQTACATIKHMALGVY 1255
R+ A L +
Sbjct: 117 TGFARKVAV-----NYLETH 131
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 35.0 bits (80), Expect = 0.11
Identities = 37/291 (12%), Positives = 84/291 (28%), Gaps = 61/291 (20%)
Query: 893 GKPARLVGASEIINRVVDD----LKDENEQYRKMVMESI-EKTMSNLGAADIDSRLEEQL 947
A ++ I++++ D + + R +E + +S S+ L
Sbjct: 2 SHMASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 948 IDGILYAFQEQTTEDVVM--LNGFGTIVNQLGKRV--KPYLPQICGTILWRLNNKSAKVR 1003
+ + Q+ V I ++L K Y+ + +L R K V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 1004 QQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTK 1063
+ AL I
Sbjct: 122 EAIRK------------------------------------------ALLTICKYYDPLA 139
Query: 1064 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWM---RICFELLEL 1120
+ +D+L + +K++ +++ C L + S + + ++++
Sbjct: 140 SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQI 199
Query: 1121 LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNL------KVQERQNRV 1165
+ + AIR +F + K G + L +L K++E +
Sbjct: 200 VNDTQPAIRTIGFESFAILIKIFGM-NTFVKTLEHLDNLKRKKIEETVKTL 249
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 35.7 bits (82), Expect = 0.13
Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 15/160 (9%)
Query: 441 LSPEEAKE-RKIMKLLLKIKNGTPPMRKA-------ALRQITDKAREFGAGPLFNQILPL 492
L + + +L ++ T + + I D E G L IL
Sbjct: 261 LGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGR 320
Query: 493 LMSPTLEDQE-RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREII 551
+ D+ R++ + + + + + V+ + I+ L D D + E+
Sbjct: 321 FLL--NNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD----CLKDLDVSIKRRAMELS 374
Query: 552 SNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVAS 591
L + M+ + +D+ + + A + A
Sbjct: 375 FALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAE 414
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.15
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 18/63 (28%)
Query: 902 SEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTE 961
E + DL++ N++ E +EK N +R+ ++ AF +Q
Sbjct: 110 QEWREKAKKDLEEWNQRQS----EQVEKNKIN-------NRIADK-------AFYQQPDA 151
Query: 962 DVV 964
D++
Sbjct: 152 DII 154
Score = 30.1 bits (67), Expect = 3.6
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 27/89 (30%)
Query: 89 EEKEVRKKLQDKAKDGTLKAVPTNGEAKAAPKKRGRWDQTSDGDVTPAKKKVAAAEWEKE 148
+E E +K +++ +R R + D + EW ++
Sbjct: 82 QEPESIRKWREE--------------------QRKRLQEL---DAASKVME---QEWREK 115
Query: 149 ADVNIEAQIRDIQNRK-KDVSEGGGEEKQ 176
A ++E + + K+ +K
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 35.2 bits (80), Expect = 0.16
Identities = 45/373 (12%), Positives = 103/373 (27%), Gaps = 65/373 (17%)
Query: 897 RLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQ 956
+L+ I+ ++D + N + + + T NL A + ++I+ +A Q
Sbjct: 415 KLIEDKASIHALMDLARGGN----QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQ 470
Query: 957 EQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVV 1016
E + +N+ + I + +S ++ A +++ +
Sbjct: 471 HIPEEHELDDV---DFINKRITVLANE--GITTALCALAKTESHNSQELIARVLNAV--- 522
Query: 1017 MKTCQEEKLMGHL---GVV--LYEYLGEEYPEVLGSILGAL---------KAIVNVIGMT 1062
C ++L G + G V L E + AL + +
Sbjct: 523 ---CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL 579
Query: 1063 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 1122
+ P+ +LL ++ + + +A + ++ L
Sbjct: 580 DVIRPLLNLL------QQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633
Query: 1123 AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT 1182
+ RA A L NL + E I +
Sbjct: 634 EDHLYLTRAA-----------------AQCLCNLVMSED--------VIKMFEGNNDRVK 668
Query: 1183 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA--VTPLLEDALMDRDLVHR 1240
L L + + AL+ + + + + +L + + +
Sbjct: 669 FLALLCED---EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725
Query: 1241 QTACATIKHMALG 1253
I +M
Sbjct: 726 HRGIVIILNMINA 738
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 34.5 bits (79), Expect = 0.27
Identities = 11/53 (20%), Positives = 16/53 (30%)
Query: 726 ATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTP 778
+P +A P+TP P +G+ P P K P
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
Score = 31.5 bits (71), Expect = 2.2
Identities = 18/81 (22%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 616 ETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDETPK 675
+PG P A T A ATP GAA G P +K + R
Sbjct: 6 TSPGTPGVAAATQAANG----GPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 676 TERETPGHSSGWAETPKTDRA 696
T K +
Sbjct: 62 TVAAGHATLREHLRDIKAENT 82
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 33.5 bits (76), Expect = 0.40
Identities = 17/56 (30%), Positives = 21/56 (37%)
Query: 724 PQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPG 779
+ P M A PG M P + P +G + P TP G M P PG
Sbjct: 171 GRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPG 226
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 1.0
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 8/33 (24%)
Query: 1081 NRHEKVQENCIDLVG-RIADRGPEYVSAREWMR 1112
+ + V C ++ ++ D EW R
Sbjct: 39 SEGDVVCALCGLVLSDKLVDTRS------EW-R 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 1.1
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 39/68 (57%)
Query: 90 EKEVRKKLQDKAKDGTLKAVPTNGEAKAAPKKRGRWDQTSDGDVTPAKKKVAAAEWEKEA 149
EK+ KKLQ +LK A D PA +A
Sbjct: 18 EKQALKKLQ-----ASLK--------LYAD------------DSAPA---LA-------- 41
Query: 150 DVNIEAQI 157
I+A +
Sbjct: 42 ---IKATM 46
Score = 31.1 bits (69), Expect = 1.4
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 18/42 (42%)
Query: 197 KFEGYVKSIADDDFDYQASFNQNKRSGYTAPAALLNDIAQSE 238
K + +K ADD +APA + A E
Sbjct: 24 KLQASLKLYADD----------------SAPALAIK--ATME 47
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 32.4 bits (73), Expect = 1.2
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 616 ETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRET--PSHDKAQSSIRRNRWDET 673
P P P A G P T D+ G PG + P+ +
Sbjct: 46 PDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAP 105
Query: 674 PKTERETPG 682
P R PG
Sbjct: 106 PAAGRAVPG 114
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 31.7 bits (72), Expect = 1.8
Identities = 25/211 (11%), Positives = 71/211 (33%), Gaps = 33/211 (15%)
Query: 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRIC---FELLELL-KAHKKA 1127
+ L LK+ E +Q+ ++ ++ R ++++ +R L+E + K++
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADV--NSKKTLREVGSVKALMECALEVKKES 186
Query: 1128 IRRATVNTFGYIA--------KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS 1179
++ ++ ++ LA L+ L + + N + + + S
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246
Query: 1180 PFT--------------VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY--- 1222
L L+ + L + + L L ++ ++
Sbjct: 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-SARNPKDQEALWDMG 305
Query: 1223 AVTPLLEDALMDRDLVHRQTACATIKHMALG 1253
AV+ L + + + + A ++++
Sbjct: 306 AVSMLKN-LIHSKHKMIAMGSAAALRNLMAN 335
Score = 30.6 bits (69), Expect = 3.2
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 8/145 (5%)
Query: 995 LNNKSAKVRQQAADLISRIAVV-----MKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSIL 1049
L K + + ++ C + + L L ++ S
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239
Query: 1050 GALKAIVNVIGMTKM-TPPIKD--LLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVS 1106
G L+ + ++I + +++ L L LK+ + N + ++ R P+
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 299
Query: 1107 AREWMRICFELLELLKAHKKAIRRA 1131
A M L L+ + K I
Sbjct: 300 ALWDMGAVSMLKNLIHSKHKMIAMG 324
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
1z3h_A
Length = 960
Score = 31.8 bits (71), Expect = 1.9
Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 7/142 (4%)
Query: 985 PQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEV 1044
I I+ + + ++ Q + IS IA + L+ L +
Sbjct: 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDL-------ASRLSNDD 136
Query: 1045 LGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEY 1104
+ + G L ++ + +L + +L + +I
Sbjct: 137 MVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196
Query: 1105 VSAREWMRICFELLELLKAHKK 1126
S + L++L
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNC 218
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 31.8 bits (71), Expect = 1.9
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 18/157 (11%)
Query: 980 VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGE 1039
+C ++ L++ ++ +A+L+ + T + ++ + E
Sbjct: 293 FVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPI---TDSLDLVLEKCWKNIESE--E 347
Query: 1040 EYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD 1099
S L L I + L + P + +V+ + +++V +++
Sbjct: 348 LISVSKTSNLSLLTKIYR---ENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE 404
Query: 1100 RGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTF 1136
+ E+ +L K IR +
Sbjct: 405 ESI--------DFLVAEV--VLIEEKDEIREMAIKLL 431
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 31.4 bits (71), Expect = 2.2
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 487 NQILPLLMSPTLEDQE-RHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARV 545
NQ+ L + R+L ++ + + H VI L + D R
Sbjct: 332 NQLGQFLQHR---ETNLRYLALESMCTLASSEFSHEAVKTHI-ETVINALKTERDVSVRQ 387
Query: 546 EGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVAS 591
+++ + + +++ M ++ D +R A++A
Sbjct: 388 RAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAE 433
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell
adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 31.5 bits (71), Expect = 2.4
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 8/145 (5%)
Query: 995 LNNKSAKVRQQAADLISRIAVV-----MKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSIL 1049
L K + + ++ C + + L L ++ S
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355
Query: 1050 GALKAIVNVI-GMTKMTPPIKD--LLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVS 1106
G L+ + ++I +++ L L LK+ + N + ++ R P+
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415
Query: 1107 AREWMRICFELLELLKAHKKAIRRA 1131
A M L L+ + K I
Sbjct: 416 ALWDMGAVSMLKNLIHSKHKMIAMG 440
Score = 29.9 bits (67), Expect = 7.0
Identities = 25/211 (11%), Positives = 71/211 (33%), Gaps = 33/211 (15%)
Query: 1072 LPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRIC---FELLELL-KAHKKA 1127
+ L LK+ E +Q+ ++ ++ R ++++ +R L+E + K++
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADV--NSKKTLREVGSVKALMECALEVKKES 302
Query: 1128 IRRATVNTFGYIA--------KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS 1179
++ ++ ++ LA L+ L + + N + + + S
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362
Query: 1180 PFT--------------VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY--- 1222
L L+ + L + + L L ++ ++
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARNPKDQEALWDMG 421
Query: 1223 AVTPLLEDALMDRDLVHRQTACATIKHMALG 1253
AV+ L + + + + A ++++
Sbjct: 422 AVSMLKN-LIHSKHKMIAMGSAAALRNLMAN 451
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 31.4 bits (70), Expect = 2.5
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 917 EQYRKMVMESIEKTMSNLGAAD-IDSRLEEQLIDGILYAFQE--QTTEDVVMLNGFGTIV 973
++ ++ I +S + L+D +L +Q + +L+ IV
Sbjct: 751 RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIV 810
Query: 974 NQLGKRVKPYLPQICGTIL 992
N+LG + +PQI +
Sbjct: 811 NKLGGHITAEIPQIFDAVF 829
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis,
lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Length = 286
Score = 30.9 bits (70), Expect = 2.6
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1260 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 1309
+ L+H +Y IF TSP V+A +E R L+
Sbjct: 68 SEKLSHPEDYGGL-IF-TSPRAVEAAELCLEQNNKTEVWERSLKEKWNAK 115
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens}
SCOP: a.118.1.24
Length = 457
Score = 31.0 bits (69), Expect = 3.1
Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 18/138 (13%)
Query: 1033 LYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDL------LPRLTPILKNRHEKV 1086
+YL + + I + K + +L +L++ ++ V
Sbjct: 7 AVQYLSSQDEKYQ---AIGAYYIQH---TCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 1087 QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA-IRRATVNTFGYIA----- 1140
Q+ + + R E + LL+ A I++ ++
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 1141 KAIGPHDVLATLLNNLKV 1158
K D L L + + +
Sbjct: 121 KEELIADALPVLADRVII 138
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 30.7 bits (68), Expect = 4.4
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 919 YRKMVMESIEKTMSNLGAAD-IDSRLEEQLIDGILYAFQEQTTE--DVVMLNGFGTIVNQ 975
+K +++ +E +S D + L E L++ +L + + D +LN T+V +
Sbjct: 727 IKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEK 786
Query: 976 LGKRVKPYLPQI 987
+G + + I
Sbjct: 787 VGHMIPQGVILI 798
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis,
nucleotide-binding, phosphorylation, RNA- binding,
rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae}
PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.8 bits (69), Expect = 4.6
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 49/135 (36%)
Query: 976 LGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYE 1035
L V+PY+ Q+ I NK +++ A++
Sbjct: 85 LSPSVEPYIVQLVPAICTNAGNKDKEIQSVASE--------------------------- 117
Query: 1036 YLGEEYPEVLGSILGALKAIVNVIGMTKMTPP-IKDLLPRLTPILKNRHE-KVQENCIDL 1093
L +I + + P IK LLP LT + ++ + + +
Sbjct: 118 ---------------TLISI-----VNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAA 157
Query: 1094 VGRIADRGPEYVSAR 1108
+ D + V+ R
Sbjct: 158 FSAMVDAAKDQVALR 172
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 29.8 bits (66), Expect = 4.7
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 692 KTDRAGPGGDLIQETPT-PGGVSSKRRSRWDETPQATPSGAMTPS---AATPGGMTPSTP 747
K + + +++ T P G++ W + + P +A TP+T
Sbjct: 126 KVLQKKATTVVFEDSETMPNGITGTTLFNWYGNRIQSGYFVIQPGEINSAPIATATPTTK 185
Query: 748 ITPHVGSTPLMTPS-GVTPTGNKAMAMATPTPGHL 781
T + P +T + T T + A PT L
Sbjct: 186 PTAFASTMPTVTLTPTPTATTTTTIPTAVPTTESL 220
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 29.8 bits (67), Expect = 6.0
Identities = 15/85 (17%), Positives = 18/85 (21%), Gaps = 5/85 (5%)
Query: 555 AKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRW 614
A I + A VA LGIP F P+
Sbjct: 78 EAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFH-----CPSYVPS 132
Query: 615 DETPGHPKPGAETPGATPSTRLWDA 639
P P T W+
Sbjct: 133 PYYPPPPLGEPSTQDTIDIPAQWER 157
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 29.8 bits (66), Expect = 6.6
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 1051 ALKAIVNVIGMTKMTPPIKDLLPRLTPIL----KNRHEKVQENCIDLVGRIADRGPEYVS 1106
+ + + DL+ P L K + K+ + +D+ +
Sbjct: 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA------G 74
Query: 1107 AREWMRICFELLELLKAHKKAIRRATVNT 1135
+++C + +E K K+ R ++
Sbjct: 75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEA 103
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.1 bits (67), Expect = 6.6
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 701 DLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTP 760
D++ + + +++ + G +TP + G + + + +PL+
Sbjct: 1442 DVMIDEESLVKYMPEQKI---TEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDS 1498
Query: 761 SGVTPTGNKAMAMATPTPG 779
A G
Sbjct: 1499 GSNDAMAGGFTAYGGADYG 1517
>2gbw_B Biphenyl 2,3-dioxygenase beta subunit; rieske oxygenase,
oxidoreductase, non heme iron; 1.70A {Sphingobium
yanoikuyae} PDB: 2gbx_B* 2ckf_B
Length = 174
Score = 28.4 bits (63), Expect = 9.7
Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 196 GKFEGYVKSIADDDFDYQASFNQNKRSGYTAPAALLNDIAQSEKDYDPFADRRQKTVAEK 255
G++ +++ + +D Y + + + P +D A D+ R ++ + +
Sbjct: 30 GQYREWLQGMVAEDIHYWMPIYEQRLTRDRRPDPTPDDAAIYNDDFGELKQRVERLYSGQ 89
Query: 256 EDEYRAIRR-RMIISPERVDPFAEGHLAAMTPEQIQAYRWEREID 299
+ R +S G L ++ + R + E+
Sbjct: 90 VWMEDPPSKIRYFVSNVEAFEAGNGELDVLSNILVYRNRRQTEVT 134
>3io5_A Recombination and repair protein; storage dimer, inactive
conformation, RECA like core domain, binding, DNA
damage, DNA recombination; 2.40A {Enterobacteria phage
T4}
Length = 333
Score = 29.0 bits (65), Expect = 9.9
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 17/104 (16%)
Query: 375 IPIRTPARKLTATPTPIAGTPTGFFI----QQEDKT-------AKYMDNQPKGNLPFLKP 423
+ + P + + G +G I + K+ + YM P F
Sbjct: 7 VRTKIPMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66
Query: 424 E---DAQYFDKLLVDVDEDSLSPEEAKERK---IMKLLLKIKNG 461
E Y + VD + +P ++ E+ ++ L I+ G
Sbjct: 67 EFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERG 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,859,699
Number of extensions: 1436022
Number of successful extensions: 4035
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3879
Number of HSP's successfully gapped: 151
Length of query: 1359
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1254
Effective length of database: 3,770,088
Effective search space: 4727690352
Effective search space used: 4727690352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.6 bits)