BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10463
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/448 (45%), Positives = 279/448 (62%), Gaps = 40/448 (8%)
Query: 188 CTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKS 247
C + LP +S+VIVFHNEAWS LLRTVHSVI+RSPR M++EI+LVDDAS R+FLK
Sbjct: 19 CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKR 78
Query: 248 SLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVAR 307
L+ YV KL VP VIR R GLI+ARL GA + G+++ FLDAHCECT GWLE L+AR
Sbjct: 79 PLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR 138
Query: 308 VAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEP 367
+ DR VVCP+ID+ISD TF Y+ ++ +G FNW+L+FRWY + ++ D T P
Sbjct: 139 IKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLP 198
Query: 368 FKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHL 427
+TP MAGGLF+IDR YF IG YD M +WGGENLE+SFR+WQCGG++EI CSHV H+
Sbjct: 199 VRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHV 258
Query: 428 FRKASPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLELRK 487
FRKA+PY+FPGG +++ N R+A VWMDE+ F++ +P K D + SRL LR+
Sbjct: 259 FRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKV-DYGDISSRLGLRR 317
Query: 488 QLKCHSFKWYLTHVWPHHFLPMDDKFFGRIRHVQTHKCVEKPLAKGS------------- 534
+L+C F WYL +++P +P G IR+V+T++C++ K +
Sbjct: 318 KLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGG 377
Query: 535 --------------------MNQASGPASLLPCTHLP--VLTQMFVMKLPTDLIATDESV 572
+++ +GP ++L C HL L + +KL + +++
Sbjct: 378 NQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQ-- 435
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRW 600
CLD E+ P +R C+G Q+W
Sbjct: 436 CLDKATEEDSQVPSIR--DCTGSRSQQW 461
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Query: 62 SDRIPVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSM 121
S+ I +NR+LPDVR CKTKV+ + LP +S+VIVFHNEAWS LLRTVHSVI+RSPR M
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDN-LPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHM 60
Query: 122 LKEILLVDDASTREFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVF 181
++EI+LVDDAS R+FLK L+ YV KL VP VIR R GLI+ARL GA + G+++ F
Sbjct: 61 IEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITF 120
Query: 182 LDAHCECTLVFNEEFLPK 199
LDAHCECT + E L +
Sbjct: 121 LDAHCECTAGWLEPLLAR 138
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/332 (48%), Positives = 213/332 (64%), Gaps = 9/332 (2%)
Query: 197 LPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKL 256
LP +S+VI FHNEA SALLRTV SV+ +SP ++KEI+LVDD S + +L + K+
Sbjct: 65 LPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSN-DPEDGALLGKIEKV 123
Query: 257 SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVAEDRTRVV 316
RV+R+ R GL+++R+ GA A+ ++L FLD+HCEC WLE L+ RVAEDRTRVV
Sbjct: 124 ----RVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVV 179
Query: 317 CPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAGG 376
P+ID+I+ F YV + G F+W L F+W ++ + P KTP +AGG
Sbjct: 180 SPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGG 239
Query: 377 LFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKASPYSF 436
LF +D+ YF +G YD M VWGGENLE+SFRVWQCGGS+EI PCS V H+FRK PY+F
Sbjct: 240 LFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTF 299
Query: 437 PGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLELRKQLKCHSFKW 496
PGG V N R A VWMDE+ FY+ P A + ++SRLELRK+L C FKW
Sbjct: 300 PGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSA-RNVPYGNIQSRLELRKKLSCKPFKW 358
Query: 497 YLTHVWPHHFLP-MDDKFFGRIRHVQTHKCVE 527
YL +V+P +P D FG ++ Q C++
Sbjct: 359 YLENVYPELRVPDHQDIAFGALQ--QGTNCLD 388
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 98/152 (64%), Gaps = 6/152 (3%)
Query: 48 AQQLYQINRFNLLVSDRIPVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWSALL 107
Q Y N+FN + SD++ ++R +PD R +C+ K + + LP +S+VI FHNEA SALL
Sbjct: 25 GQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVD-LPATSVVITFHNEARSALL 83
Query: 108 RTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKAR 167
RTV SV+ +SP ++KEI+LVDD S + +L + K+ RV+R+ R GL+++R
Sbjct: 84 RTVVSVLKKSPPHLIKEIILVDDYSN-DPEDGALLGKIEKV----RVLRNDRREGLMRSR 138
Query: 168 LLGARQAEGEILVFLDAHCECTLVFNEEFLPK 199
+ GA A+ ++L FLD+HCEC + E L +
Sbjct: 139 VRGADAAQAKVLTFLDSHCECNEHWLEPLLER 170
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 224/349 (64%), Gaps = 13/349 (3%)
Query: 185 HCECTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREF 244
H C E LP +SI+I FHNE WS+LLRTVHSV++RSP ++ EI+LVDD S RE
Sbjct: 99 HPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREH 158
Query: 245 LKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENL 304
LK L++Y+A L R++R+ R GLI+ R+LGA A G+++ FLD+HCE + WL L
Sbjct: 159 LKKPLEDYMA-LFPSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPL 217
Query: 305 VARVAEDRTRVVCPVIDIISDVTFAY-VRSFELHWGAFNWELHFRWYTYGSSDAIIKRKD 363
+ R+A +R +VCP+ID+I F Y ++ + GAF+WE++++ +++ D
Sbjct: 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPE---LQKAD 274
Query: 364 FTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSH 423
++PF++P MAGGLFA+DR +F+ +G YD +++WGGE E+SF+VW CGG +E PCS
Sbjct: 275 PSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSR 334
Query: 424 VAHLFRKASPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRL 483
V H++RK PY P GVS L NL RVA VWMDE+AE+ ++ PE + V +
Sbjct: 335 VGHIYRKYVPYKVPAGVS--LARNLKRVAEVWMDEYAEYIYQRRPEY-RHLSAGDVAVQK 391
Query: 484 ELRKQLKCHSFKWYLTHV-W--PHHFLPMDD--KFFGRIRHVQTHKCVE 527
+LR L C SFKW++T + W P + P++ +G IR+V T C +
Sbjct: 392 KLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNVGTGLCAD 440
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 108/149 (72%), Gaps = 5/149 (3%)
Query: 45 LSDAQ---QLYQINRFNLLVSDRIPVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNE 101
++DA+ Q Y+ N FN+ VSD+I +NR+LPD+R P C +K + E LP +SI+I FHNE
Sbjct: 65 MTDAERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLET-LPNTSIIIPFHNE 123
Query: 102 AWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPTRVIRSPGRV 161
WS+LLRTVHSV++RSP ++ EI+LVDD S RE LK L++Y+A L R++R+ R
Sbjct: 124 GWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMA-LFPSVRILRTKKRE 182
Query: 162 GLIKARLLGARQAEGEILVFLDAHCECTL 190
GLI+ R+LGA A G+++ FLD+HCE +
Sbjct: 183 GLIRTRMLGASVATGDVITFLDSHCEANV 211
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 36/235 (15%)
Query: 201 SIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPT 260
SIVI +N A +L + + E+++ DD S +E ++ + E+ + L++
Sbjct: 96 SIVIPTYNRA--KILAITLACLCNQKTIYDYEVIVADDGS-KENIEEIVREFESLLNIKY 152
Query: 261 RVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVA-EDRTRVVCP- 318
+ G L R LG R A+ + LD W+++ + +A +D ++ P
Sbjct: 153 VRQKDYG-YQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPR 211
Query: 319 ---------VIDIISD----------VTFAYVRSFELHWGAFNWEL-HFRWYTYGSSDAI 358
+D +S +T V + +W + HF+ ++D +
Sbjct: 212 KYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFK-----NTDNL 266
Query: 359 IKRKDFTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCG 413
+ PF+ +GG A + + F G +DEE WGGE+ E +R+++ G
Sbjct: 267 ---RLCNTPFR--FFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 36/235 (15%)
Query: 201 SIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPT 260
SIVI +N A +L + + E+++ DD S +E ++ + E+ + L++
Sbjct: 95 SIVIPTYNRA--KILAITLACLCNQKTIYDYEVIVADDGS-KENIEEIVREFESLLNIKY 151
Query: 261 RVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVA-EDRTRVVCP- 318
+ G L R LG R A+ + LD W+++ + +A +D ++ P
Sbjct: 152 VRQKDYG-YQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPR 210
Query: 319 ---------VIDIISD----------VTFAYVRSFELHWGAFNWEL-HFRWYTYGSSDAI 358
+D +S +T V + +W + HF+ ++D +
Sbjct: 211 KYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFK-----NTDNL 265
Query: 359 IKRKDFTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCG 413
+ PF+ +GG A + + F G +DEE WGGE+ E +R+++ G
Sbjct: 266 ---RLCNTPFR--FFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 315
>pdb|3L7J|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7K|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
Length = 729
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 89 LPKSSIVIVFHN--EAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVA 146
+ K +I++ ++N E + L ++ + R+ +++V+D ST + K +DE +
Sbjct: 1 MNKLTIIVTYYNAEEYITGCLESI-----KQQRTQDFNLIIVNDGSTDQ-SKKLMDEAIK 54
Query: 147 KLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLVFNEEFLPKSSIVIVF 206
R I G AR + + E +FLDA E +S I F
Sbjct: 55 DYDKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDEL-----------ASYAITF 103
Query: 207 HNEAWS---ALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSL 249
+ E ++ L+ +HS ++ P+ + + + V+ + +E + S L
Sbjct: 104 YLEKFNNTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKENINSFL 149
>pdb|3L7I|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf
Length = 729
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 89 LPKSSIVIVFHN--EAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVA 146
+ K +I++ ++N E + L ++ + R+ +++V+D ST + K +DE +
Sbjct: 1 MNKLTIIVTYYNAEEYITGCLESI-----KQQRTQDFNLIIVNDGSTDQ-SKKLMDEAIK 54
Query: 147 KLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLVFNEEFLPKSSIVIVF 206
R I G AR + + E +FLDA E +S I F
Sbjct: 55 DYDKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDEL-----------ASYAITF 103
Query: 207 HNEAWS---ALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSL 249
+ E ++ L+ +HS ++ P+ + + + V+ + +E + S L
Sbjct: 104 YLEKFNNTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKENINSFL 149
>pdb|3L7M|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
Length = 729
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 89 LPKSSIVIVFHN--EAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVA 146
+ K +I++ ++N E + L ++ + R+ +++V+D ST + K +DE +
Sbjct: 1 MNKLTIIVTYYNAEEYITGCLESI-----KQQRTQDFNLIIVNDGSTDQ-SKKLMDEAIK 54
Query: 147 KLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLVFNEEFLPKSSIVIVF 206
R I G AR + + E +FLDA E +S I F
Sbjct: 55 DYDKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDEL-----------ASYAITF 103
Query: 207 HNEAWS---ALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSL 249
+ E ++ L+ +HS ++ P+ + + + V+ + +E + S L
Sbjct: 104 YLEKFNNTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKENINSFL 149
>pdb|2C5Q|A Chain A, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|B Chain B, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|C Chain C, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|D Chain D, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|E Chain E, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|F Chain F, Crystal Structure Of Yeast Yer010cp
Length = 240
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 514 FGRIRHVQTHKCVEKPL---AKGSMNQASGPASLLPCTHLPVLTQMFVMKL--PTDLIAT 568
FGRIR V H+ + P+ GS + ++ L +LT V + P D IA
Sbjct: 118 FGRIRDVDEHRTLNHPVFAYGVGSCAPKAVVKAVGTNVQLKILTSDGVTQTIXPGDYIAG 177
Query: 569 DESVCLDVPEYENDIS 584
D + + +P E DIS
Sbjct: 178 DNNGIVRIPVQETDIS 193
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTY 602
CLDVP +V++ C Q+WTY
Sbjct: 323 CLDVPNASTTDGTQVQLYDCHSATNQQWTY 352
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTY 602
CLDVP +V++ C Q+WTY
Sbjct: 323 CLDVPNASTTDGTQVQLYDCHSATNQQWTY 352
>pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
Length = 96
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 7 VQLLKLARNQQDYIDRRGVHVVVGHYLGDSVDGGLHSNLSDA-QQLYQINRFNLLVSDR 64
+ LLKL +++ YI RG +VG + D + LSDA + +YQ+N L S+R
Sbjct: 12 LDLLKLNLDERVYIKLRGARTLVGTL--QAFDSHCNIVLSDAVETIYQLNNEELSESER 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,785,475
Number of Sequences: 62578
Number of extensions: 720623
Number of successful extensions: 1905
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1869
Number of HSP's gapped (non-prelim): 40
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)