RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10463
(605 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 402 bits (1035), Expect = e-135
Identities = 201/422 (47%), Positives = 268/422 (63%), Gaps = 14/422 (3%)
Query: 185 HCECTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREF 244
C + LP +S+VIVFHNEAWS LLRTVHSVI+RSPR M++EI+LVDDAS R+F
Sbjct: 16 LEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDF 75
Query: 245 LKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENL 304
LK L+ YV KL VP VIR R GLI+ARL GA + G+++ FLDAHCECT GWLE L
Sbjct: 76 LKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPL 135
Query: 305 VARVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDF 364
+AR+ DR VVCP+ID+ISD TF Y+ ++ +G FNW+L+FRWY + ++ D
Sbjct: 136 LARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR 195
Query: 365 TEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHV 424
T P +TP MAGGLF+IDR YF IG YD M +WGGENLE+SFR+WQCGG++EI CSHV
Sbjct: 196 TLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHV 255
Query: 425 AHLFRKASPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLE 484
H+FRKA+PY+FPGG +++ N R+A VWMDE+ F++ +P + D + SRL
Sbjct: 256 GHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGV-TKVDYGDISSRLG 314
Query: 485 LRKQLKCHSFKWYLTHVWPHHFLPMDDKFFGRIRHVQTHKCVEKPLAKGSMNQASGPASL 544
LR++L+C F WYL +++P +P G IR+V+T++C++ K + +
Sbjct: 315 LRRKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKE-----NEKVGI 369
Query: 545 LPCTHLPVLTQMFVMKLPTDLIATDESVCLDVPEYENDISPRVRILACSGFN-RQRWTYD 603
C H Q+F I TD+ +CLDV + V +L C Q W YD
Sbjct: 370 FNC-HGMGGNQVFSYT-ANKEIRTDD-LCLDVSKLNG----PVTMLKCHHLKGNQLWEYD 422
Query: 604 KE 605
Sbjct: 423 PV 424
Score = 174 bits (443), Expect = 2e-48
Identities = 84/136 (61%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
Query: 62 SDRIPVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSM 121
S+ I +NR+LPDVR CKTKV+ + LP +S+VIVFHNEAWS LLRTVHSVI+RSPR M
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDN-LPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHM 60
Query: 122 LKEILLVDDASTREFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVF 181
++EI+LVDDAS R+FLK L+ YV KL VP VIR R GLI+ARL GA + G+++ F
Sbjct: 61 IEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITF 120
Query: 182 LDAHCECTLVFNEEFL 197
LDAHCECT + E L
Sbjct: 121 LDAHCECTAGWLEPLL 136
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 390 bits (1002), Expect = e-130
Identities = 172/423 (40%), Positives = 232/423 (54%), Gaps = 20/423 (4%)
Query: 185 HCECTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREF 244
H +C LP +S+VI FHNEA SALLRTV SV+ +SP ++KEI+LVDD S
Sbjct: 53 HDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPE 112
Query: 245 LKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENL 304
+ L + RV+R+ R GL+++R+ GA A+ ++L FLD+HCEC WLE L
Sbjct: 113 DGALLGKIE-----KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167
Query: 305 VARVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDF 364
+ RVAEDRTRVV P+ID+I+ F YV + G F+W L F+W ++ +
Sbjct: 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNP 227
Query: 365 TEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHV 424
P KTP +AGGLF +D+ YF +G YD M VWGGENLE+SFRVWQCGGS+EI PCS V
Sbjct: 228 VAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRV 287
Query: 425 AHLFRKASPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLE 484
H+FRK PY+FPGG V N R A VWMDE+ FY+ P A ++SRLE
Sbjct: 288 GHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARN-VPYGNIQSRLE 346
Query: 485 LRKQLKCHSFKWYLTHVWPHHFLPMD-DKFFGRIRHVQTHKCVEKPLAKGSMNQASGPAS 543
LRK+L C FKWYL +V+P +P D FG ++ A G
Sbjct: 347 LRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGH-------FADGVVG 399
Query: 544 LLPCTHLPVLTQMFVMKLPTDLIATDESVCLDVPEYENDISPRVRILACSGFN-RQRWTY 602
+ C H Q + + + + CL V + +++ C + RQ+W
Sbjct: 400 VYEC-HNAGGNQEWALT-KEKSVKHMDL-CLTVVDRAP--GSLIKLQGCRENDSRQKWEQ 454
Query: 603 DKE 605
+
Sbjct: 455 IEG 457
Score = 168 bits (425), Expect = 1e-45
Identities = 61/142 (42%), Positives = 91/142 (64%), Gaps = 6/142 (4%)
Query: 48 AQQLYQINRFNLLVSDRIPVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWSALL 107
Q Y N+FN + SD++ ++R +PD R +C+ K + + LP +S+VI FHNEA SALL
Sbjct: 25 GQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVD-LPATSVVITFHNEARSALL 83
Query: 108 RTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKAR 167
RTV SV+ +SP ++KEI+LVDD S + L + RV+R+ R GL+++R
Sbjct: 84 RTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKI-----EKVRVLRNDRREGLMRSR 138
Query: 168 LLGARQAEGEILVFLDAHCECT 189
+ GA A+ ++L FLD+HCEC
Sbjct: 139 VRGADAAQAKVLTFLDSHCECN 160
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 384 bits (988), Expect = e-127
Identities = 164/438 (37%), Positives = 241/438 (55%), Gaps = 34/438 (7%)
Query: 185 HCECTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREF 244
H C E LP +SI+I FHNE WS+LLRTVHSV++RSP ++ EI+LVDD S RE
Sbjct: 99 HPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREH 158
Query: 245 LKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENL 304
LK L++Y+A R++R+ R GLI+ R+LGA A G+++ FLD+HCE + WL L
Sbjct: 159 LKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPL 217
Query: 305 VARVAEDRTRVVCPVIDIISDVTFAYVR-SFELHWGAFNWELHFRWYTYGSSDAIIKRKD 363
+ R+A +R +VCP+ID+I F Y + + GAF+WE++++ ++ D
Sbjct: 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPEL---QKAD 274
Query: 364 FTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSH 423
++PF++P MAGGLFA+DR +F+ +G YD +++WGGE E+SF+VW CGG +E PCS
Sbjct: 275 PSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSR 334
Query: 424 VAHLFRKASPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRL 483
V H++RK PY P G L NL RVA VWMDE+AE+ ++ PE + V +
Sbjct: 335 VGHIYRKYVPYKVPAG--VSLARNLKRVAEVWMDEYAEYIYQRRPEY-RHLSAGDVAVQK 391
Query: 484 ELRKQLKCHSFKWYLTHVWP---HHFLPMD--DKFFGRIRHVQTHKCVEKPLAKGSMNQA 538
+LR L C SFKW++T + + P++ +G IR+V T C + + + A
Sbjct: 392 KLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNVGTGLCAD------TKHGA 445
Query: 539 SG-PASLLPC-----THLPVLTQMFVM----KLPTDLIATDESVCLDVPEYENDISPRVR 588
G P L C Q+F + + C D + + V
Sbjct: 446 LGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAISHTS----PVT 501
Query: 589 ILACSGFN-RQRWTYDKE 605
+ C Q W Y K+
Sbjct: 502 LYDCHSMKGNQLWKYRKD 519
Score = 170 bits (431), Expect = 5e-46
Identities = 73/147 (49%), Positives = 103/147 (70%), Gaps = 2/147 (1%)
Query: 43 SNLSDAQQLYQINRFNLLVSDRIPVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEA 102
++ Q Y+ N FN+ VSD+I +NR+LPD+R P C +K + E LP +SI+I FHNE
Sbjct: 66 TDAERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLET-LPNTSIIIPFHNEG 124
Query: 103 WSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPTRVIRSPGRVG 162
WS+LLRTVHSV++RSP ++ EI+LVDD S RE LK L++Y+A R++R+ R G
Sbjct: 125 WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREG 183
Query: 163 LIKARLLGARQAEGEILVFLDAHCECT 189
LI+ R+LGA A G+++ FLD+HCE
Sbjct: 184 LIRTRMLGASVATGDVITFLDSHCEAN 210
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 74.2 bits (182), Expect = 4e-14
Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 28/261 (10%)
Query: 193 NEEFLPKSSIVI-VFHNEAWSALLRTVHSVIS-RSPRSMLKEILLVDDAS---TREFLKS 247
+ + SIVI ++ L T+ + + ++ E+++ DD S E ++
Sbjct: 88 KQLIIDGLSIVIPTYNRAKI--LAITLACLCNQKTIYDY--EVIVADDGSKENIEEIVR- 142
Query: 248 SLDEYVAKLSVPTRVIRSPGR-VGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVA 306
E+ + L++ + +R L R LG R A+ + LD W+++ +
Sbjct: 143 ---EFESLLNI--KYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYME 197
Query: 307 RVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTE 366
+A D + I Y+ K D+
Sbjct: 198 LLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRI 257
Query: 367 PFKTP------------AMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGG 414
+GG A + + F G +DEE WGGE+ E +R+++ G
Sbjct: 258 EHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGC 317
Query: 415 SIEIAPCSHVAHLFRKASPYS 435
+ H
Sbjct: 318 YFRSVEGAMAYHQEPPGKENE 338
Score = 52.6 bits (126), Expect = 3e-07
Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 33/234 (14%)
Query: 181 FLDAHCECTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDAS 240
+ E + +P SI I +N + ++R V S ++++ E+ + DD S
Sbjct: 358 YFYRKKEKIESATLKRVPLVSIYIPAYNCSK-YIVRCVESALNQTITD--LEVCICDDGS 414
Query: 241 TREFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGW 300
T + L+ L E+ A R I + G+ A R G + LD+
Sbjct: 415 TDDTLRI-LQEHYANHPR-VRFISQKNK-GIGSASNTAVRLCRGFYIGQLDSDDFLEPDA 471
Query: 301 LENLVARVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIK 360
+E + +D + Y + + + +
Sbjct: 472 VELCLDEFRKD------------LSLACVY--TTNRNIDREGNLISNGY----------N 507
Query: 361 RKDFTEP-FKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCG 413
++ + + + ++E + + +M ++ + G
Sbjct: 508 WPIYSREKLTSAMICHHFRMFTARAWNLTEGFNESIS--NAVDYDMYLKLSEVG 559
Score = 48.0 bits (114), Expect = 6e-06
Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 16/125 (12%)
Query: 66 PVNRTLPDVRKPKCKTKVFNEEFLPKSSIVI-VFHNEAWSALLRTVHSVIS-RSPRSMLK 123
N + ++ + + + SIVI ++ L T+ + + ++
Sbjct: 69 STNDYVWAGKRKELDDYPRKQLIIDGLSIVIPTYNRAKI--LAITLACLCNQKTIYDY-- 124
Query: 124 EILLVDDAS---TREFLKSSLDEYVAKLSVPTRVIRSPGR-VGLIKARLLGARQAEGEIL 179
E+++ DD S E ++ E+ + L++ + +R L R LG R A+ +
Sbjct: 125 EVIVADDGSKENIEEIVR----EFESLLNI--KYVRQKDYGYQLCAVRNLGLRAAKYNYV 178
Query: 180 VFLDA 184
LD
Sbjct: 179 AILDC 183
Score = 45.3 bits (107), Expect = 5e-05
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 72 PDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDA 131
P + K K + + +P SI I +N + ++R V S ++++ E+ + DD
Sbjct: 357 PYFYRKKEKIESATLKRVPLVSIYIPAYNCSK-YIVRCVESALNQTITD--LEVCICDDG 413
Query: 132 STREFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDA 184
ST + L+ L E+ A R I + G+ A R G + LD+
Sbjct: 414 STDDTLRI-LQEHYANHPR-VRFISQKNK-GIGSASNTAVRLCRGFYIGQLDS 463
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 5e-13
Identities = 91/609 (14%), Positives = 169/609 (27%), Gaps = 252/609 (41%)
Query: 101 EAWSALLRTV---HSVISRSPRSMLKEILLVDDASTREFLKSS-L-DEYVAKLSVPTRVI 155
+A+S R + H + LLV T F +S L +++ L PT
Sbjct: 2 DAYS--TRPLTLSHGSLEHV--------LLV---PTASFFIASQLQEQFNKILPEPTEGF 48
Query: 156 ------RSPGRVGLIKARLLG--ARQAE-------GEIL-VFLDAHCECTLVFNEEFLPK 199
+P L+ + LG + E ++L + L F +L
Sbjct: 49 AADDEPTTP--AELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTE-------FENCYL-- 96
Query: 200 SSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVP 259
N+ +H++ ++ + ++ T+E +K+ Y+ +
Sbjct: 97 ------EGND--------IHALAAKLLQENDTTLV-----KTKELIKN----YITARIMA 133
Query: 260 TRVIRSPGRVGLIKARLLG-AR-------QAEGEILVFLDAHCECTL--------GWLEN 303
R L +A G A+ Q G + + E L + +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYFE---E--LRDLYQTYHVLVGD 186
Query: 304 LVARVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKD 363
L+ AE + +I D + + + W
Sbjct: 187 LIKFSAE----TLSELIRTTLDAEKVFTQGLNIL----------EW-------------- 218
Query: 364 FTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSH 423
P TP D+ Y I +S + I + +H
Sbjct: 219 LENPSNTP---------DKDYLLSI---------------PISCPL------IGVIQLAH 248
Query: 424 VAHLFRKASPYSFPGGVSEVLYGNLARVALVWM-------DEWAEFYFKFNPEAEKQRDK 476
+ K ++ PG + L G + D W F+
Sbjct: 249 YV-VTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFF------------- 293
Query: 477 QAVRSRLE------LRKQLKCHSFKWYLTHVWPHHFL-----------------PM---- 509
+VR + +R C+ +P+ L PM
Sbjct: 294 VSVRKAITVLFFIGVR----CY-------EAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 510 ---DDKFFGRIRHVQTHKCVEKPLAKGSMNQA-----SG-PASL--LPCTHL------PV 552
++ + +H K + +N A SG P SL L L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL-NLTLRKAKAPSG 401
Query: 553 LTQ----------MFVMK-LPTD-------LIATDESVCLDVPEYENDISPRVRILACSG 594
L Q F + LP L+ + + D+ +N++S + +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV--KNNVSFNAKDIQIPV 459
Query: 595 FNRQRWTYD 603
++ T+D
Sbjct: 460 YD----TFD 464
Score = 58.1 bits (140), Expect = 6e-09
Identities = 85/576 (14%), Positives = 156/576 (27%), Gaps = 222/576 (38%)
Query: 8 QLLKLARN--QQDYIDRRGVHVVVGHYLGDSVDGGLHSNLSDAQQLYQINRFNLLVSDRI 65
Q+L L + Y++ +H + L ++ D L + RI
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQEN-DTTLVKTKELIKNYITA---------RI 131
Query: 66 PVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVF----HNEAWSALLRT--------VHSV 113
R +F + +V +F + + + LR V +
Sbjct: 132 MAKRPFDKKSNS----ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 114 ISRSPRSMLKEILLVDDASTREFLKSSLD--------------EYVAK--LSVP------ 151
I S L E L+ + L+ +Y+ +S P
Sbjct: 188 IKFS-AETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 152 ----TRVIRSPG-RVGLIKARLLGARQAEGEILV------------FLDAH--------- 185
+ G G +++ L GA ++ F +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 186 --CECTLVFNEEFLPKSSIV--IVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDAST 241
C + LP SI+ + +NE P M L + + +
Sbjct: 306 IGVRCYEAYPNTSLP-PSILEDSLENNEG--------------VPSPM----LSISNLT- 345
Query: 242 REFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKAR----LLGARQAEGEILVFLDAHCECT 297
+E ++ +++ + L +V + L+ + G Q+ L L+
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQV-----EISLVNGAKNLVVSGPPQS----LYGLNLT---- 392
Query: 298 LGWLENLVARVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDA 357
L A D++R+ P F
Sbjct: 393 ---LRKAKAPSGLDQSRI--P----------------------------FS--------- 410
Query: 358 IIKRK-----DF---TEPFKTPAMAGGLFAIDRAYF---FHIGAYDEEMQVW---GGENL 403
+RK F PF + + I++ A D ++ V+ G +L
Sbjct: 411 --ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 404 EMSFRVWQCGGSIEIAPCSHVAHLFR------KASPYS------F-PGGVSEVLYGNL-- 448
S I+ V + R + + F PGG S + G L
Sbjct: 469 --------RVLSGSISE-RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL--GVLTH 517
Query: 449 -------ARVALVW-MDEWAEFYFKFNPEAE---KQ 473
RV + +D NP+ + KQ
Sbjct: 518 RNKDGTGVRVIVAGTLDI--------NPDDDYGFKQ 545
Score = 45.4 bits (107), Expect = 5e-05
Identities = 42/216 (19%), Positives = 63/216 (29%), Gaps = 82/216 (37%)
Query: 2 ELISVVQLL--KLARNQQDYI-----DRRGVHVVVGHYLGDSVDGGLHSNLSDAQQLYQI 54
++ V L +Q I + VV G Q LY
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKN--LVVSGP----------------PQSLY-- 387
Query: 55 NRFNLLV----------SDRIPVNRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWS 104
NL + RIP + RK K F+ FLP + FH S
Sbjct: 388 -GLNLTLRKAKAPSGLDQSRIPFSE-----RKLK-----FSNRFLP---VASPFH----S 429
Query: 105 ALLRTVHSVISRS--------PRSMLKE-ILLVDDASTREFLKSSLDEYVAK--LSVP-- 151
LL +I++ ++ + D S L S+ E + + +P
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 152 ---------TRVIR-SPGRV-GLIKARLLGARQAEG 176
T ++ PG GL L R +G
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGV---LTHRNKDG 522
Score = 43.5 bits (102), Expect = 2e-04
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 65/225 (28%)
Query: 130 DASTREFLKSSLDEYVAKLSVPTRV-IRSPGRVGL-IKARLLGARQAEGEILVF---LDA 184
D ++ S+ + V ++ P + I G G I+ ++F +D
Sbjct: 1650 DNHFKDTYGFSILDIV--INNPVNLTIHFGGEKGKRIRENYSA--------MIFETIVDG 1699
Query: 185 HCECTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREF 244
+ +F E + + S F +E L T + P + L++ A+ +
Sbjct: 1700 KLKTEKIFKE--INEHSTSYTFRSEK-GLLSATQFT----QPA-----LTLMEKAAFED- 1746
Query: 245 LKS-------------SLDEYVAKLSVPTRVIRSPGRVGLIKAR-LLGARQAE------- 283
LKS SL EY A L+ V+ V ++ R +
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAA-LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 284 ---------GEILVFLDAHCECTLGWLENLVARVAEDRTRVVCPV 319
G + L+ +V RV + +V V
Sbjct: 1806 NYGMIAINPGRVAASFSQEA------LQYVVERVGKRTGWLVEIV 1844
Score = 36.2 bits (83), Expect = 0.042
Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 53/182 (29%)
Query: 291 DAHCECTLGW-LENLVA----------------RVAEDRTRVVCPVIDIISDVTFAYVRS 333
D H + T G+ + ++V R+ E+ + ++ + I D +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF---ETIVDGKLKTEKI 1706
Query: 334 FELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAGGLFAIDRAYFFHIGAYDE 393
F+ H YT+ S ++ FT+ PA+ +++A F E
Sbjct: 1707 FK------EINEHSTSYTFRSEKGLLSATQFTQ----PAL----TLMEKAAF-------E 1745
Query: 394 EMQVWGGENLEMSFRVWQCGGSI-EIAPCSHVAHLFRKASPYSFPGGVSEVLY-GNLARV 451
+++ G + +F G S+ E A + +A + S V V Y G +V
Sbjct: 1746 DLKSKGLIPADATF----AGHSLGEYAALASLADVM------SIESLVEVVFYRGMTMQV 1795
Query: 452 AL 453
A+
Sbjct: 1796 AV 1797
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 60.0 bits (145), Expect = 1e-09
Identities = 24/244 (9%), Positives = 70/244 (28%), Gaps = 22/244 (9%)
Query: 198 PKSSIVIVFHNEAWSALLRTVHSVI-SRSPRSMLKEILLVDDASTREFLKSSLDEYVAKL 256
++ I N + + + + ++ +++ D + A+L
Sbjct: 180 ANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARL 238
Query: 257 SVPTRVIRSPGR-------VGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVA 309
+ P + +A + + + ++F+D + ++A
Sbjct: 239 GSRLSIHDQPNLGGSGGYSRVMYEAL----KNTDCQQILFMDDDIRLEPDSILRVLAMHR 294
Query: 310 EDRT-RVVCPVIDIISDVTFAYVRSFELHWGAFNW------ELHFRWYTYGSSDAIIKRK 362
+ +V + + + + ++ + F W E + Y +D + K
Sbjct: 295 FAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDFAEYPLNDNNSRSK 354
Query: 363 DFTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCS 422
I R +G + + ++ + R + G P +
Sbjct: 355 LLHRRIDVDYNGWWTCMIPRQVAEELG-QPLPLFIK-WDDADYGLRAAEHGYPTVTLPGA 412
Query: 423 HVAH 426
+ H
Sbjct: 413 AIWH 416
Score = 32.3 bits (73), Expect = 0.51
Identities = 9/102 (8%), Positives = 31/102 (30%), Gaps = 13/102 (12%)
Query: 90 PKSSIVIVFHNEAWSALLRTVHSVI-SRSPRSMLKEILLVDDASTREFLKSSLDEYVAKL 148
++ I N + + + + ++ +++ D + A+L
Sbjct: 180 ANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARL 238
Query: 149 SVPTRVIRSPGR-------VGLIKARLLGARQAEGEILVFLD 183
+ P + +A + + + ++F+D
Sbjct: 239 GSRLSIHDQPNLGGSGGYSRVMYEAL----KNTDCQQILFMD 276
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 53.4 bits (128), Expect = 1e-07
Identities = 45/351 (12%), Positives = 95/351 (27%), Gaps = 30/351 (8%)
Query: 198 PKSSIVIVFHN-EAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKL 256
K +I++ ++N E + + + S+ + + +++V+D ST + K +DE +
Sbjct: 2 NKLTIIVTYYNAEEY--ITGCLESIKQQRTQDF--NLIIVNDGSTDQSKKL-MDEAIKDY 56
Query: 257 SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVAEDRTRVV 316
R I G AR + + E +FLDA E + + + + ++
Sbjct: 57 DKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDELASYAITFYLEK-FNNTDGLI 115
Query: 317 CPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSS--DAIIKRKDFTE-------- 366
P+ + +V + FN + + + S + I +
Sbjct: 116 APIHSFTTQ-RPQFVDLDRVRVEYFNAKENINSFLRKQSACNIIFRTAIVRAHHIRFNEN 174
Query: 367 -------PFKTPAM--AGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIE 417
F M I F+ G + + S
Sbjct: 175 LNTYVDWSFVLEYMKYVNKFVRIFNFPFYFRGEVYDPFETLTLSEQNFDILFKDYVNSFY 234
Query: 418 IAPCSHVAHLFRKASPYSFPGGVSEVLYGNL---ARVALVWMDEWAEFYFKFNPEAEKQR 474
A R+ ++ D E + K +
Sbjct: 235 DAIKRATNPKVREFIVTKMGNKIANEFEPTRYDINERYQTHKDTLVELSKFLHVHLVKNQ 294
Query: 475 DKQAVRSRLELRKQLKCHSFKWYLTHVWPHHFLPMDDKFFGRIRHVQTHKC 525
+ L +FK H + + + R +
Sbjct: 295 KLINKIETILLMNNETDKAFKVNQFRKTLRHVKNIVLRRKNKERSLYDLTD 345
Score = 53.1 bits (127), Expect = 2e-07
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 90 PKSSIVIVFHN-EAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKL 148
K +I++ ++N E + + + S+ + + +++V+D ST + K +DE +
Sbjct: 2 NKLTIIVTYYNAEEY--ITGCLESIKQQRTQDF--NLIIVNDGSTDQSKKL-MDEAIKDY 56
Query: 149 SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDA 184
R I G AR + + E +FLDA
Sbjct: 57 DKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 48.9 bits (116), Expect = 2e-06
Identities = 28/236 (11%), Positives = 57/236 (24%), Gaps = 42/236 (17%)
Query: 201 SIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPT 260
S+ + ++A R + S E L D+ +F
Sbjct: 19 SVCSLVRDQAK--YDRLLESFERFGFTPDKAEFLAADNREGNQF---------------- 60
Query: 261 RVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVAEDRTRVVCPVI 320
+ +G ++F E ++LVA + P
Sbjct: 61 ---------HGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEAD--PKW 109
Query: 321 DIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAGGLFAI 380
+ A L+ LH R+ P + ++ +
Sbjct: 110 LVAG---VAGSPWRPLNHSVTAQALHISDVFG------NDRRRGNVPCRVESLDECFLLM 160
Query: 381 DRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKASPYSF 436
R + + ++ + GG H+ H R + +F
Sbjct: 161 RRLKPVLNSYDMQG---FHYYGADLCLQAEFLGGRAYAID-FHLHHYGRAIADENF 212
Score = 30.4 bits (68), Expect = 1.6
Identities = 10/90 (11%), Positives = 21/90 (23%), Gaps = 27/90 (30%)
Query: 93 SIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLSVPT 152
S+ + ++A R + S E L D+ +F
Sbjct: 19 SVCSLVRDQAK--YDRLLESFERFGFTPDKAEFLAADNREGNQF---------------- 60
Query: 153 RVIRSPGRVGLIKARLLGARQAEGEILVFL 182
+ +G ++F
Sbjct: 61 ---------HGFSWHKQMLPRCKGRYVIFC 81
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 46.6 bits (110), Expect = 1e-05
Identities = 39/255 (15%), Positives = 77/255 (30%), Gaps = 26/255 (10%)
Query: 201 SIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDAS---TREFLKSSLDEYVAKL- 256
S+V+ +E + + IS ++ E++++D S T A++
Sbjct: 51 SVVLPALDEE-DTIGSVI-DSISPLVDGLVDELIVLDSGSTDDTEIRAV----AAGARVV 104
Query: 257 SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHC-ECTLGWLENLVARVAEDRTRV 315
S + P R G +A + G+I+VF+D+ ++ LV +
Sbjct: 105 SREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVH 164
Query: 316 VCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAG 375
+ V Y R + + E G
Sbjct: 165 L---------VKSFYRRPLNVGDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLG 215
Query: 376 GLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKASPYS 435
G +A R + +G E + + + G IA + + + P +
Sbjct: 216 GEYAATRELLTSVPFAPG----YGVE-IGLLVDTFDRLGLDAIAQVN-LGVREHRNRPLA 269
Query: 436 FPGGVSEVLYGNLAR 450
G +S + L
Sbjct: 270 ELGAMSRQVIATLLS 284
Score = 40.8 bits (95), Expect = 9e-04
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 93 SIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDAS---TREFLKSSLDEYVAKL- 148
S+V+ +E + + IS ++ E++++D S T A++
Sbjct: 51 SVVLPALDEE-DTIGSVI-DSISPLVDGLVDELIVLDSGSTDDTEIRAV----AAGARVV 104
Query: 149 SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDA 184
S + P R G +A + G+I+VF+D+
Sbjct: 105 SREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDS 140
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 43.2 bits (101), Expect = 2e-04
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 515 GRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLP----VLTQMFVMKLPTDLIATDE 570
G I + ++ C++ +GS SG + C L + + +
Sbjct: 197 GEIVNAKSGMCLD---VEGSDG--SGNVGIYRCDDLRDQMWSRPNAYCNGDYCSFLNKES 251
Query: 571 SVCLDVPEYENDISPRVRILACSGFNRQRWTYD 603
+ CLDV + + V C G QR+ +
Sbjct: 252 NKCLDVSGDQG--TGDVGTWQCDGLPDQRFKWV 282
Score = 38.6 bits (89), Expect = 0.005
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 491 CHSF---KWYLTHVWPHHFLPMDDKFFGRIRHVQTHKCVEKPLAKGSMNQASGPASLLPC 547
C + +Y+ P + F+GR+R+ ++ C++ +GS + + C
Sbjct: 136 CQNLDDQYFYVRSRGP-------ELFYGRLRNEKSDLCLD---VEGSDGKG--NVLMYSC 183
Query: 548 THLPVLTQMFVMKLPTDLIATDESVCLDVPEYENDISPRVRILACSGFNRQRWTYDK 604
Q F +++ +CLDV + S V I C Q W+
Sbjct: 184 EDNL--DQWFRYYENGEIVNAKSGMCLDVEGSDG--SGNVGIYRCDDLRDQMWSRPN 236
Score = 35.9 bits (82), Expect = 0.040
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 491 CHSFKWYLTHVWPHHFLPMDDKFFGRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHL 550
S +W ++ I ++ + KC++ + G+ G + C +L
Sbjct: 85 PSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGT-----GDIGVYDCQNL 139
Query: 551 PVLTQMFVM------KLPTDLIATDESVCLDVPEYENDISPRVRILACSGFNRQRWTYD 603
Q F + L +CLDV + V + +C Q + Y
Sbjct: 140 D--DQYFYVRSRGPELFYGRLRNEKSDLCLDVEGSDG--KGNVLMYSCEDNLDQWFRYY 194
Score = 32.0 bits (72), Expect = 0.57
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTY 602
C+D+ + S + C G + Q+
Sbjct: 21 CVDIVGNQG--SGNIATYDCDGLSDQQIII 48
Score = 30.9 bits (69), Expect = 1.5
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 17/102 (16%)
Query: 515 GRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTD---------- 564
G IR+ + C GS N + +P + + T
Sbjct: 52 GTIRNEARNYCFT---PDGSGNANVMSSPCTLYPEIPSSQRWRQGRRKTFTDNGGIEQVA 108
Query: 565 --LIATDESVCLDVPEYENDISPRVRILACSGFNRQRWTYDK 604
+I CLD+ +D + + + C + Q +
Sbjct: 109 TEIINLASGKCLDIEG--SDGTGDIGVYDCQNLDDQYFYVRS 148
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 42.0 bits (99), Expect = 3e-04
Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 90 PKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLK--EILLVDDAS---TREFLKSSLDEY 144
PK S+++ +N++ + +++ S++S++ E+ ++DD S T ++ L++
Sbjct: 1 PKVSVIMTSYNKS-DYVAKSISSILSQT----FSDFELFIMDDNSNEETLNVIRPFLNDN 55
Query: 145 VAKL--SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDA 184
+ S + V + AEGE + +
Sbjct: 56 RVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
Score = 42.0 bits (99), Expect = 3e-04
Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 198 PKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLK--EILLVDDAS---TREFLKSSLDEY 252
PK S+++ +N++ + +++ S++S++ E+ ++DD S T ++ L++
Sbjct: 1 PKVSVIMTSYNKS-DYVAKSISSILSQT----FSDFELFIMDDNSNEETLNVIRPFLNDN 55
Query: 253 VAKL--SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDA 292
+ S + V + AEGE + +
Sbjct: 56 RVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 8e-04
Identities = 89/616 (14%), Positives = 171/616 (27%), Gaps = 192/616 (31%)
Query: 15 NQQDYIDRRGVHVVVGHYLGD----SVDGGLHSNLSDAQQLYQINRFNLLVSDRIPVNRT 70
+ Y + + V ++ + V S LS + + ++ + V+ T
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-------IDHIIMSKDAVSGT 64
Query: 71 --LPDV--RKPKCKTKVFNEEFLPKS---------------SIVIVFHNEAWSALLRTVH 111
L K + + F EE L + S++ + E L
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 112 SV----ISR-SPRSMLKEILLVDDASTREFL-------KSSL-----DEYVAKLSVPTRV 154
+SR P L++ LL + + K+ + Y + + ++
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 155 -------IRSPGRVGLIKARLL---------GARQAEGEILVFLDAHCECTLVFNEEFLP 198
SP V + +LL + + L E + +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 199 KSSIVI--VFHNEAWSA-------LLRT-------VHSVISRSPRSMLKEILLVDDASTR 242
+V+ V + +AW+A LL T S + + S+ + + +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 243 EFLKSSLDEYVAKLSVPTRVIR-SPGRVGLIKARL------------LGARQAEGEILVF 289
L LD L P V+ +P R+ +I + + + I
Sbjct: 305 SLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 290 LDA-------HC--------------ECTLG--W-----------LENLVAR--VAEDRT 313
L+ L W + L V +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 314 RVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAM 373
+ I ++ + LH +I+ + + F + +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALH------------------RSIVDHYNIPKTFDSDDL 464
Query: 374 AGGLFAIDRAYFFHIGAY-------DEEMQV---------WGGENLEMSFRVWQCGGSIE 417
+D+ ++ HIG + E M + + + + W GSI
Sbjct: 465 --IPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 418 ------------IAPCSHVAHLFRKASPY-SFPGGVSEVL----YGNLARVALVWMDEWA 460
I C + R + F + E L Y +L R+AL M E
Sbjct: 522 NTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL--MAEDE 577
Query: 461 EFYFKFNPEAEKQRDK 476
+ EA KQ +
Sbjct: 578 AIFE----EAHKQVQR 589
>3a07_A Actinohivin; carbohydrate-binding module family 13, antiviral
protein, LE; 1.19A {Actinomycete}
Length = 118
Score = 38.6 bits (90), Expect = 9e-04
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 515 GRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTDLIATDESVCL 574
G +R+ QT +C++ + G LPC Q ++ + + L
Sbjct: 45 GTVRNAQTGRCLD--------SNYDGAVYTLPCNGGS--YQKWLFYSNGYIQNVETGRVL 94
Query: 575 DVPEYENDISPRVRILACSGFNRQRWT 601
D + V L +G N Q+W
Sbjct: 95 DSNY-----NGNVYTLPANGGNYQKWY 116
Score = 36.3 bits (84), Expect = 0.005
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 15/89 (16%)
Query: 515 GRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTDLIATDESVCL 574
IR+ QT + ++ + +G LP Q + + CL
Sbjct: 7 VTIRNAQTGRLLD--------SNYNGNVYTLPANGGN--YQRWTGPGDGTVRNAQTGRCL 56
Query: 575 DVPEYENDISPRVRILACSGFNRQRWTYD 603
D N V L C+G + Q+W +
Sbjct: 57 DS----NYDGA-VYTLPCNGGSYQKWLFY 80
Score = 30.5 bits (69), Expect = 0.56
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYDK 604
LD N V L +G N QRWT
Sbjct: 17 LLDSNYNGN-----VYTLPANGGNYQRWTGPG 43
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 39.0 bits (90), Expect = 0.003
Identities = 38/249 (15%), Positives = 72/249 (28%), Gaps = 31/249 (12%)
Query: 194 EEFLPKSSIVIVFHNEAWS--ALLRTVHSVISRSPRSMLKEILLVDDAS---TREFLKSS 248
E S V+ N A + ++ +H++ R+P ++ +IL+VD S T
Sbjct: 90 RELGLTVSAVLPSRNVADTVGGIIDEIHALNERAP--LIDQILVVDADSEDGTAGVAA-- 145
Query: 249 LDEYVAK-LSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDA-HCECTLGWLENLVA 306
+ A+ S + G A G++++++DA + ++
Sbjct: 146 --SHGAEVYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLG 203
Query: 307 RVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTE 366
V E A R + + R +
Sbjct: 204 PVLEVPG----------VRFVKAAYRRPFRKGESIEEDGGGRVTELTAKPLFNLFYPELA 253
Query: 367 PFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAH 426
F P G F DR F I + + E + V + G +A +
Sbjct: 254 GFVQPLA--GEFVADRELFCSI----PFLTGYAVE-TGIMIDVLKKVGLGAMAQV-DLGE 305
Query: 427 LFRKASPYS 435
+
Sbjct: 306 RQNRHQHLR 314
Score = 35.2 bits (80), Expect = 0.054
Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 68 NRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWS--ALLRTVHSVISRSPRSMLKEI 125
R+ + P E S V+ N A + ++ +H++ R+P ++ +I
Sbjct: 72 QRSYDYGQFPPEDLARRKRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAP--LIDQI 129
Query: 126 LLVDDAS---TREFLKSSLDEYVAK-LSVPTRVIRSPGRVGLIKARLLGARQAEGEILVF 181
L+VD S T + A+ S + G A G+++++
Sbjct: 130 LVVDADSEDGTAGVAA----SHGAEVYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLY 185
Query: 182 LDA 184
+DA
Sbjct: 186 IDA 188
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 36.8 bits (86), Expect = 0.013
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 21/70 (30%)
Query: 124 EILLVDDASTREFLKSS---LDEYVAKLSVPTRVIRSPGRV------GLIKARLLGARQA 174
EI+L+DD S + D+Y A+ + +V GL A G A
Sbjct: 36 EIILIDDESP----DNCPKICDDYAAQYP---NI-----KVIHKKNAGLGMACNSGLDVA 83
Query: 175 EGEILVFLDA 184
GE + F D+
Sbjct: 84 TGEYVAFCDS 93
Score = 36.8 bits (86), Expect = 0.013
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 21/70 (30%)
Query: 232 EILLVDDASTREFLKSS---LDEYVAKLSVPTRVIRSPGRV------GLIKARLLGARQA 282
EI+L+DD S + D+Y A+ + +V GL A G A
Sbjct: 36 EIILIDDESP----DNCPKICDDYAAQYP---NI-----KVIHKKNAGLGMACNSGLDVA 83
Query: 283 EGEILVFLDA 292
GE + F D+
Sbjct: 84 TGEYVAFCDS 93
>2aai_B Ricin (B chain); glycosidase; HET: GAL BGC NDG NAG BMA MAN; 2.50A
{Ricinus communis} SCOP: b.42.2.1 b.42.2.1 PDB: 3rti_B*
3rtj_B* 1rzo_B*
Length = 262
Score = 35.4 bits (81), Expect = 0.038
Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 9/88 (10%)
Query: 515 GRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTDLIATDESVCL 574
IR KC+ G + C + + +I S+ L
Sbjct: 55 NTIRS--NGKCLT---TYGYSPGV--YVMIYDCNTAATDATRWQIWDNGTIINPRSSLVL 107
Query: 575 DVPEYENDISPRVRILACSGFNRQRWTY 602
+ + + Q W
Sbjct: 108 AATSGNS--GTTLTVQTNIYAVSQGWLP 133
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.043
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 458 EWAEFYFKFNPEAEKQRDKQAVRSRLELRKQLKCHSFKWY 497
+W E + ++ D + E R++ K +W
Sbjct: 89 KWRE---EQRKRLQE-LDAASKVMEQEWREKAKKDLEEWN 124
Score = 28.2 bits (62), Expect = 5.6
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 457 DEWAEFYFKFNPEAEKQR------DKQAVRSR 482
+ E+ + + + EK + DK +
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
>1knl_A Endo-1,4-beta-xylanase A; carbohydrate binding module, CBM13 xylan
binding domain, LEC ricin B-like, beta-trefoil fold,
hydrolase; 1.20A {Streptomyces lividans} SCOP: b.42.2.1
PDB: 1knm_A* 1mc9_A*
Length = 130
Score = 31.1 bits (71), Expect = 0.34
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWT 601
CLD +++ CS + QRWT
Sbjct: 100 CLDAVGNGTANGTLIQLYTCSNGSNQRWT 128
Score = 28.4 bits (64), Expect = 3.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYD 603
CLD N +V+I +C G + Q+W +
Sbjct: 59 CLDAAGTSN--GSKVQIYSCWGGDNQKWRLN 87
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 32.8 bits (74), Expect = 0.36
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 19/106 (17%)
Query: 92 SSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDAST-------REFLKSSLDEY 144
S +V F +E LL V + PR +L
Sbjct: 2 SLVVFPFKHEHPEVLLHNVRVA-AAHPRV---HEVLCIGYERDQTYEAVERAAPEISRAT 57
Query: 145 VAKLSVPTRVIRSPGRVGLIKARLL------GARQAEGEILVFLDA 184
+SV + R G K + + + E + F DA
Sbjct: 58 GTPVSVRLQERLGTLRPG--KGDGMNTALRYFLEETQWERIHFYDA 101
Score = 32.8 bits (74), Expect = 0.36
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 19/106 (17%)
Query: 200 SSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDAST-------REFLKSSLDEY 252
S +V F +E LL V + PR +L
Sbjct: 2 SLVVFPFKHEHPEVLLHNVRVA-AAHPRV---HEVLCIGYERDQTYEAVERAAPEISRAT 57
Query: 253 VAKLSVPTRVIRSPGRVGLIKARLL------GARQAEGEILVFLDA 292
+SV + R G K + + + E + F DA
Sbjct: 58 GTPVSVRLQERLGTLRPG--KGDGMNTALRYFLEETQWERIHFYDA 101
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 31.7 bits (71), Expect = 0.54
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 515 GRIRHVQTHKCVEKPLAKGSMNQASGPASLL-PCTHLPVLTQMFVMKLPTDLIATDESVC 573
G IR C+ + +G ++ C ++ + +I ++
Sbjct: 56 GTIRS--NGSCLT------TYGYTAGVYVMIFDCNTAVREATIWQIWGNGTIINPRSNLV 107
Query: 574 LDVPEYENDISPRVRILACSGFNRQRWTY 602
L + + Q W
Sbjct: 108 LAASSGIK--GTTLTVQTLDYTLGQGWLA 134
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 31.7 bits (71), Expect = 0.57
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Query: 341 FNWELHFRWYTYGSSDAIIKRKDFTEPFKTP--AMAGGLFAIDRAYFFHIGAYDEEMQVW 398
Y Y SS + K GG+ + R +F + + W
Sbjct: 124 LLPLNDNLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGW 183
Query: 399 GGENLEMSFRVWQCGGSI------EIAPCSHVAHLFRKASP 433
G E+ E R+ G + + +H+ +
Sbjct: 184 GLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHR 224
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 31.2 bits (70), Expect = 0.59
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 19/147 (12%)
Query: 372 AMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKA 431
A AG A +R +F A + G + F H A K
Sbjct: 16 AFAGESQARNRYNYFGGQAKKD-----GFVQISDIFA------ETADQEREH-AKRLFKF 63
Query: 432 -------SPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLE 484
+FP G+ + NL A E+ E Y F A ++ ++ R
Sbjct: 64 LEGGDLEIVAAFPAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFAS 123
Query: 485 LRKQLKCHSFKWYLTHVWPHHFLPMDD 511
+ + H ++
Sbjct: 124 IAVAEEFHEKRFLDFARNIKEGRVFLR 150
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY
motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG
EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A*
3a23_A*
Length = 614
Score = 32.1 bits (72), Expect = 0.68
Identities = 35/291 (12%), Positives = 62/291 (21%), Gaps = 15/291 (5%)
Query: 319 VIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAII-----KRKDFTEPFKTPAM 373
VI + D G+ ++ D T + +
Sbjct: 288 VIAVDQDSRGLQGVKVA-EDTTGLQAYGKVLSGTGNRAVVLLNRTSAAHDITVRWSDLGL 346
Query: 374 AGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFR-KAS 432
+ + G + + +
Sbjct: 347 TNASATVRDLWARQNVGTSATGYTASVPAGGSVMLTVTGGTEAAGGAYAATSTGRYTGVT 406
Query: 433 PYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLELRKQLKCH 492
S V +V Y N A + V + L K
Sbjct: 407 AASTGLNVVDVAYTNNTSSARTATLQVNGQTATTVSFPPTGASAGTVSVEVSLSKGSANT 466
Query: 493 SFKWYLTHVWPHHFLPMDDKFFGRIRHVQTHKCVEKPLAKGSMNQASG-PASLLPCTHLP 551
P+ + Q+ +C + +G A L C P
Sbjct: 467 LALSGGPATEGITVRPLPGTNGALVTGKQSGRCADIYNN----TITNGTQAELWDCNGGP 522
Query: 552 VLTQMFVMKLPTDLIATDESVCLDVPEYENDISPRVRILACSGFNRQRWTY 602
Q + +L+ + CLD +V I C+G Q+W
Sbjct: 523 --NQSWTYTSRKELVLYG-NKCLDAYNLGTTNGTKVVIWDCNGQANQKWNI 570
Score = 29.4 bits (65), Expect = 4.2
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWT 601
CLD + + +C + Q+WT
Sbjct: 584 CLDAYNAATANGTSLVLWSCGTGDNQKWT 612
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 30.9 bits (69), Expect = 0.79
Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 20/147 (13%)
Query: 372 AMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKA 431
A+AG A + F A ++ G E + F + A H L
Sbjct: 36 AIAGETGAHAKYTAFAKAAREQ-----GYEQIARLFE------ATAAAELIH-IGLEYAL 83
Query: 432 --------SPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRL 483
+ + NL A + E ++ Y F +A+++ + +AV
Sbjct: 84 VAEMEPGYEKPTVAAPSAYSCDLNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVFT 143
Query: 484 ELRKQLKCHSFKWYLTHVWPHHFLPMD 510
+ H+ ++ +
Sbjct: 144 RAKLAESVHAERYLAAYNDIDAPDDDK 170
>3c9z_A Agglutinin II, SNA-II; beta-trefoil, ricin-B domain, glycosylation,
glycoprotein, L sugar binding protein, plant protein;
HET: NAG FUC SO4; 1.35A {Sambucus nigra} PDB: 3ca0_A*
3ca1_A* 3ca3_A* 3ca4_A* 3ca5_A* 3ca6_A* 3cah_A* 1hwm_B*
1hwn_B* 1hwo_B* 1hwp_B*
Length = 258
Score = 31.1 bits (70), Expect = 0.81
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYDKE 605
L V + + IL C G QRW ++ +
Sbjct: 182 GLCVTTNGYNSKDLIIILKCQGLPSQRWFFNSD 214
Score = 30.0 bits (67), Expect = 2.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYDK 604
C+DV + +++ C QRWT+D
Sbjct: 14 CVDVRNGYDTDGTPLQLWPCGTQRNQRWTFDS 45
>1ggp_B TKL-1, protein (lectin 1 B chain); sugar binding protein; 2.70A
{Trichosanthes kirilowii} SCOP: b.42.2.1 b.42.2.1
Length = 254
Score = 31.3 bits (70), Expect = 0.84
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 562 PTDLIATDESVCLDVPEYENDISPRVRILACSGFNRQRWTYDK 604
T IA + C DV + + + + C+ + Q WT +
Sbjct: 4 ATVRIAGRDGFCADVNGEGQNGAA-IILKKCAENDNQLWTLKR 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.4
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 137 LKSSLDEYVAKLSVPTRVIRS 157
L++SL Y A S P I++
Sbjct: 25 LQASLKLY-ADDSAPALAIKA 44
Score = 29.9 bits (66), Expect = 1.4
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 245 LKSSLDEYVAKLSVPTRVIRS 265
L++SL Y A S P I++
Sbjct: 25 LQASLKLY-ADDSAPALAIKA 44
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 30.6 bits (68), Expect = 1.5
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 371 PAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSI-----EIAPCSHVA 425
GG+ A+ + F I + WGGE+ ++ R+ G SI + H+
Sbjct: 172 VQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIR 231
Query: 426 HLFRKASP 433
H K +
Sbjct: 232 HSRDKKNE 239
>4axo_A EUTQ, ethanolamine utilization protein; structural protein,
bacterial microcompartment, BMC; 1.00A {Clostridium
difficile}
Length = 151
Score = 29.2 bits (65), Expect = 2.1
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 353 GSSDAIIKRKDFTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQC 412
G+ ++ KD ++P + G+ + F YDE V ++ + +
Sbjct: 46 GNPSDVVYTKDLFTLEESPRLGCGMMEMKETTFDWTLNYDEIDYV-----IDGTLDIIID 100
Query: 413 GGSIEIAP 420
G + +
Sbjct: 101 GRKVSASS 108
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein
structure initiative II (PSI II), structural genomics;
1.95A {Thermotoga maritima}
Length = 142
Score = 27.5 bits (62), Expect = 6.3
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 120 SMLKEILLVDD-ASTREFLKSSL 141
S+ +++VD+ T +K++L
Sbjct: 2 SLTPTVMVVDESRITFLAVKNAL 24
Score = 27.5 bits (62), Expect = 6.3
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 228 SMLKEILLVDD-ASTREFLKSSL 249
S+ +++VD+ T +K++L
Sbjct: 2 SLTPTVMVVDESRITFLAVKNAL 24
>3nhm_A Response regulator; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Length = 133
Score = 27.6 bits (62), Expect = 6.4
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 120 SMLKEILLVDD-ASTREFLKSSL-DEY 144
S+ ++L+V++ + RE L+ L E+
Sbjct: 2 SLKPKVLIVENSWTMRETLRLLLSGEF 28
Score = 27.6 bits (62), Expect = 6.4
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 228 SMLKEILLVDD-ASTREFLKSSL-DEY 252
S+ ++L+V++ + RE L+ L E+
Sbjct: 2 SLKPKVLIVENSWTMRETLRLLLSGEF 28
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex,
response regulator, receiver domain, two-component
signal transduction; HET: BFD; 1.96A {Borrelia
burgdorferi}
Length = 157
Score = 27.5 bits (61), Expect = 7.1
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 115 SRSPRSMLKEILLVDD-ASTREFLKSSLDE 143
+ +L+VDD T + L
Sbjct: 29 INYDTGIPFNVLIVDDSVFTVKQLTQIFTS 58
Score = 27.5 bits (61), Expect = 7.1
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 223 SRSPRSMLKEILLVDD-ASTREFLKSSLDE 251
+ +L+VDD T + L
Sbjct: 29 INYDTGIPFNVLIVDDSVFTVKQLTQIFTS 58
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 28.3 bits (63), Expect = 7.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 151 PTRVIRSPGRVGLI 164
P +R+PGRV +I
Sbjct: 54 PKFYVRAPGRVNII 67
Score = 28.3 bits (63), Expect = 7.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 259 PTRVIRSPGRVGLI 272
P +R+PGRV +I
Sbjct: 54 PKFYVRAPGRVNII 67
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown
function, uncharacterized protein, signal receiver
domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Length = 137
Score = 27.5 bits (62), Expect = 7.9
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 120 SMLKEILLVDD-ASTREFLKSSLDE 143
S+ +LLV+D S K + +
Sbjct: 2 SLRPRVLLVEDSTSLAILYKQYVKD 26
Score = 27.5 bits (62), Expect = 7.9
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 228 SMLKEILLVDD-ASTREFLKSSLDE 251
S+ +LLV+D S K + +
Sbjct: 2 SLRPRVLLVEDSTSLAILYKQYVKD 26
>3hdg_A Uncharacterized protein; two-component sensor activity, response
regulator, PSI-II, 11227F, NYSGXRC, structural genomics;
2.27A {Wolinella succinogenes}
Length = 137
Score = 27.1 bits (61), Expect = 8.0
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 117 SPRSMLKEILLVDD-ASTREFLKSSLDEY 144
S R + +IL+V+D RE+L + + +
Sbjct: 2 SLREVALKILIVEDDTDAREWLSTIISNH 30
Score = 27.1 bits (61), Expect = 8.0
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 225 SPRSMLKEILLVDD-ASTREFLKSSLDEY 252
S R + +IL+V+D RE+L + + +
Sbjct: 2 SLREVALKILIVEDDTDAREWLSTIISNH 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.426
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,616,339
Number of extensions: 591537
Number of successful extensions: 1608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1558
Number of HSP's successfully gapped: 85
Length of query: 605
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 506
Effective length of database: 3,937,614
Effective search space: 1992432684
Effective search space used: 1992432684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.3 bits)