RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10463
(605 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 269 bits (688), Expect = 4e-86
Identities = 176/319 (55%), Positives = 228/319 (71%), Gaps = 1/319 (0%)
Query: 185 HCECTLVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREF 244
C + LP +S+VIVFHNEAWS LLRTVHSVI+RSPR M++EI+LVDDAS R+F
Sbjct: 9 LEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDF 68
Query: 245 LKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENL 304
LK L+ YV KL VP VIR R GLI+ARL GA + G+++ FLDAHCECT GWLE L
Sbjct: 69 LKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPL 128
Query: 305 VARVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDF 364
+AR+ DR VVCP+ID+ISD TF Y+ ++ +G FNW+L+FRWY + ++ D
Sbjct: 129 LARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR 188
Query: 365 TEPFKTPAMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHV 424
T P +TP MAGGLF+IDR YF IG YD M +WGGENLE+SFR+WQCGG++EI CSHV
Sbjct: 189 TLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHV 248
Query: 425 AHLFRKASPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLE 484
H+FRKA+PY+FPGG +++ N R+A VWMDE+ F++ +P K D + SRL
Sbjct: 249 GHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTK-VDYGDISSRLG 307
Query: 485 LRKQLKCHSFKWYLTHVWP 503
LR++L+C F WYL +++P
Sbjct: 308 LRRKLQCKPFSWYLENIYP 326
Score = 98.1 bits (243), Expect = 5e-23
Identities = 79/121 (65%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Query: 68 NRTLPDVRKPKCKTKVFNEEFLPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILL 127
NR+LPDVR CKTKV+ + LP +S+VIVFHNEAWS LLRTVHSVI+RSPR M++EI+L
Sbjct: 1 NRSLPDVRLEGCKTKVYPDN-LPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVL 59
Query: 128 VDDASTREFLKSSLDEYVAKLSVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCE 187
VDDAS R+FLK L+ YV KL VP VIR R GLI+ARL GA + G+++ FLDAHCE
Sbjct: 60 VDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCE 119
Query: 188 C 188
C
Sbjct: 120 C 120
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 90.8 bits (225), Expect = 3e-20
Identities = 34/353 (9%), Positives = 68/353 (19%), Gaps = 79/353 (22%)
Query: 200 SSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLK---------SSLD 250
S +V F +E LL V V + PR + E+L + + + +
Sbjct: 1 SLVVFPFKHEHPEVLLHNV-RVAAAHPR--VHEVLCIGYERDQTYEAVERAAPEISRATG 57
Query: 251 EYVAKLSVPTRVIRSPGR-VGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVA 309
V+ PG+ G+ A + + E + F DA A
Sbjct: 58 TPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAA 117
Query: 310 EDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFK 369
+ +V W + + + +
Sbjct: 118 DFGYGLVRH------------YFPRASTDAMITWMITRTGFAL------LWPHTELSWIE 159
Query: 370 TPAMAGGLFAIDRAYFFHI-------GAYDEEMQVW-----------------GGENLEM 405
P GG + R + D +
Sbjct: 160 QP--LGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHR 217
Query: 406 SFR---------------VWQCGGSIEIAPCSHVAHLFRKASPYSFPGGVSEVLYGNLAR 450
+ + + P H P V
Sbjct: 218 LYGGLDDLRTMLVECFAAIQSLQHEVVGQPAIHRQ-EHPHRVPVHIAERV-GYDVEATLH 275
Query: 451 VALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLELRKQLKCHSFKWYLTHVWP 503
+ + ++ +R+ +
Sbjct: 276 RLMQHWTPRQVELLELFTTP----VREGLRTCQRRPA-FNFMDEMAWAATYHV 323
Score = 58.1 bits (140), Expect = 1e-09
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 92 SSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLK---------SSLD 142
S +V F +E LL V V + PR + E+L + + + +
Sbjct: 1 SLVVFPFKHEHPEVLLHNV-RVAAAHPR--VHEVLCIGYERDQTYEAVERAAPEISRATG 57
Query: 143 EYVAKLSVPTRVIRSPGR-VGLIKARLLGARQAEGEILVFLDAHCECTLVFNEEFLPK 199
V+ PG+ G+ A + + E + F DA F +++ K
Sbjct: 58 TPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITS---FGPDWITK 112
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 53.5 bits (127), Expect = 2e-08
Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 7/182 (3%)
Query: 197 LPKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKL 256
L ++++ +N LLR ++ + L ++++V + + + +
Sbjct: 2 LDSFTLIMQTYNRTDL-LLRLLNHYQAVPS---LHKVIVVWNNVGEKGPEELWNSLGPH- 56
Query: 257 SVPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVAEDRTRVV 316
P VI P ++ RL + E ++ +D + L + + +++
Sbjct: 57 --PIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQII 114
Query: 317 CPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAGG 376
V + ++ + K K PA
Sbjct: 115 GFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHA 174
Query: 377 LF 378
L
Sbjct: 175 LI 176
>d1vcla1 b.42.2.1 (A:1-150) Hemolytic lectin CEL-III, domains 1 and
2 {Cucumaria echinata [TaxId: 40245]}
Length = 150
Score = 43.0 bits (100), Expect = 2e-05
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 514 FGRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTDLIATDESVC 573
G +R ++ +CV+ NQ SG + C L Q ++ + + C
Sbjct: 10 IGELRSFKSKQCVDIV-----GNQGSGNIATYDCDGLS--DQQIIICGDGTIRNEARNYC 62
Query: 574 LDVPEYEN-DISPRVRILACSGFNRQRWTYDK 604
N ++ L + QRW +
Sbjct: 63 FTPDGSGNANVMSSPCTLYPEIPSSQRWRQGR 94
Score = 32.2 bits (72), Expect = 0.082
Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 25/122 (20%)
Query: 496 WYLTHVWPHHFLPMDDKFFGRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQ 555
Y + G IR+ + C + PCT P +
Sbjct: 35 TYDCDGLSDQQ--IIICGDGTIRNEARNYCFTPD------GSGNANVMSSPCTLYPEIPS 86
Query: 556 MFVMKL---------------PTDLIATDESVCLDVPEYENDISPRVRILACSGFNRQRW 600
+ T++I CLD+ + + + + C + Q +
Sbjct: 87 SQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDG--TGDIGVYDCQNLDDQYF 144
Query: 601 TY 602
Sbjct: 145 YV 146
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 38.7 bits (89), Expect = 3e-04
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 11/98 (11%)
Query: 507 LPMDDKFFGRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTDLI 566
+P G IR+V+T++C++ K + + C + V +
Sbjct: 2 IPRHYFSLGEIRNVETNQCLDNMARK-----ENEKVGIFNCHG---MGGNQVFSYTANKE 53
Query: 567 ATDESVCLDVPEYENDISPRVRILACSGFNRQRWTYDK 604
+ +CLDV P + Q W YD
Sbjct: 54 IRTDDLCLDVS---KLNGPVTMLKCHHLKGNQLWEYDP 88
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 39.7 bits (91), Expect = 6e-04
Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 15/216 (6%)
Query: 198 PKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDASTREFLKSSLDEYVAKLS 257
PK S+++ +N++ + +++ S++S++ E+ ++DD S E L + ++
Sbjct: 1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSNEETLN-VIRPFLNDNR 56
Query: 258 VPTRVIRSPGRVGLIKARLLGARQAEGEILVFLDAHCECTLGWLENLVARVAEDRTRVVC 317
V G + A + + + T + DR +
Sbjct: 57 VRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYM------PDRLLKMV 110
Query: 318 PVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAGGL 377
+D + Y S H + + ++
Sbjct: 111 RELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVT-----WNAPCAIDHCSVMHRY 165
Query: 378 FAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCG 413
+++ +DE + + +RV
Sbjct: 166 SVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFY 201
Score = 37.4 bits (85), Expect = 0.003
Identities = 10/44 (22%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 90 PKSSIVIVFHNEAWSALLRTVHSVISRSPRSMLKEILLVDDAST 133
PK S+++ +N++ + +++ S++S++ E+ ++DD S
Sbjct: 1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSN 41
>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1
and 2 {Cucumaria echinata [TaxId: 40245]}
Length = 133
Score = 34.6 bits (78), Expect = 0.011
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 513 FFGRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTDLIATDESV 572
F+GR+R+ ++ C++ + G + C Q F +++ +
Sbjct: 4 FYGRLRNEKSDLCLDVE-----GSDGKGNVLMYSCEDNL--DQWFRYYENGEIVNAKSGM 56
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYDKE 605
CLDV + S V I C Q W+
Sbjct: 57 CLDVEGSDG--SGNVGIYRCDDLRDQMWSRPNA 87
>d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13
(Endo-1,4-beta-xylanase C-terminal domain) {Streptomyces
lividans [TaxId: 1916]}
Length = 129
Score = 33.0 bits (74), Expect = 0.034
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 513 FFGRIRHVQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMFVMKLPTDLIATDESV 572
G+I+ V + +C++ + L C Q + D+
Sbjct: 4 DGGQIKGVGSGRCLD---VPDASTSDGTQLQLWDCHSGT-NQQWAATDAGELRVYGDK-- 57
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYD 603
CLD N +V+I +C G + Q+W +
Sbjct: 58 CLDAAGTSN--GSKVQIYSCWGGDNQKWRLN 86
Score = 31.8 bits (71), Expect = 0.073
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 500 HVWPHHFLPMDDKFFGRIRH--VQTHKCVEKPLAKGSMNQASGPASLLPCTHLPVLTQMF 557
+W H V KC++ A G+ N + + C Q +
Sbjct: 31 QLWDCHSGTNQQWAATDAGELRVYGDKCLD---AAGTSNGS--KVQIYSCWGGD--NQKW 83
Query: 558 VMKLPTDLIATDESVCLDVPEYENDISPRVRILACSGFNRQRWT 601
+ ++ +CLD +++ CS + QRWT
Sbjct: 84 RLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGSNQRWT 127
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 271
Score = 33.8 bits (77), Expect = 0.039
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 375 GGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSI-----EIAPCSHVAHLFR 429
GG+ A+ + F I + GGE+ ++ R+ G S+ I + H
Sbjct: 160 GGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRD 219
Query: 430 KASP 433
K +
Sbjct: 220 KKNE 223
>d1rzob1 b.42.2.1 (B:2001-2135) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 135
Score = 32.5 bits (73), Expect = 0.049
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 534 SMNQASGPASLLPCTHLPVLTQMFVMKLPTDLIATDESVCLDVPEYENDISPRVRILACS 593
S + + C+ V + + +I + L + ++ +
Sbjct: 67 SKSSPRQQVVIYNCSTATVGATRWQIWDNRTIINPRSGLVLAATSGNSGT--KLTVQTNI 124
Query: 594 GFNRQRWT 601
Q W
Sbjct: 125 YAVSQGWL 132
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/118 (14%), Positives = 25/118 (21%)
Query: 336 LHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAGGLFAIDRAYFFHIGAYDEEM 395
+ + + I E D + A
Sbjct: 33 VAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAK 92
Query: 396 QVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKASPYSFPGGVSEVLYGNLARVAL 453
V + Q S V +R A G SE+ LA+ AL
Sbjct: 93 HVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 150
>d1hwmb1 b.42.2.1 (B:3-135) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 133
Score = 29.1 bits (64), Expect = 0.78
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYDKE 605
C+DV + +++ C Q+WT+ +
Sbjct: 20 CVDVRNGYDTDGTPIQLWPCGTQRNQQWTFYND 52
>d1ggpb1 b.42.2.1 (B:11-140) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 126
Score = 28.2 bits (62), Expect = 1.3
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 573 CLDVPEYENDISPRVRILACSGFNRQRWTYDK 604
C DV + + + + C+ + Q WT +
Sbjct: 15 CADVNGEGQNGAA-IILKKCAENDNQLWTLKR 45
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 28.2 bits (63), Expect = 2.8
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 34 GDSVDGGLHSNLSDAQQLYQINRFNLLVSDRIPVNRTLPDVRKPKCKTKVFNE 86
G V GLH +S + +I N + D+R P + V
Sbjct: 107 GMDVISGLHFKISQQTEFLKIAHEN---------GTRIIDIRIPPLELDVLRG 150
>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of
haemagglutinin-esterase-fusion glycoprotein HEF1
{Influenza C virus [TaxId: 11552]}
Length = 271
Score = 28.0 bits (62), Expect = 2.9
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 455 WMDEWAEFYFKFNPEAEKQRDK---QAVRSR 482
W D F A + +K AV+S
Sbjct: 131 WTDIKLNFQKNIYELASQSHEKGPVTAVQSI 161
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 394
Score = 28.0 bits (61), Expect = 3.3
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 11/146 (7%)
Query: 329 AYVRSFELHWGAFNWELHFRWYTYGSSDAI---IKRKDFTEPFKTPAMAGGLFAIDRAYF 385
A +R + HW + E F+ + + + I F P + G + +++A
Sbjct: 56 AALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALG 115
Query: 386 FH--------IGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKASPYSFP 437
+ I + G +N + G + + +F+K +
Sbjct: 116 WARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYS 175
Query: 438 GGVSEVLYGNLARVALVWMDEWAEFY 463
V + N ++ MD+ +F+
Sbjct: 176 DVVIGIELLNEPLGPVLNMDKLKQFF 201
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 27.7 bits (60), Expect = 4.1
Identities = 13/107 (12%), Positives = 21/107 (19%)
Query: 314 RVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAM 373
R P + W +R ++ I +
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQ 206
Query: 374 AGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAP 420
L + G+Y M G S +AP
Sbjct: 207 HDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVAP 253
>d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase
{Escherichia coli [TaxId: 562]}
Length = 221
Score = 27.4 bits (60), Expect = 4.3
Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 22/166 (13%)
Query: 274 ARLLGARQAEGEILVFLDAHCECTLGWLENLVARVAE-DRTRVVCPVIDIISDVTFAYVR 332
+ +A ++ + LDA+ T + V R R+ +
Sbjct: 45 MVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRAFA 104
Query: 333 SFELHWGAFNWELHFRWYTYGSSDAIIKRKDFTEPFKTPAMAGGLFAIDRAYFFHIGAYD 392
A++ L + + + + + P + G L + A+
Sbjct: 105 RETGIAIAWDESLREPDFAFVAEEGV----RAVVI--KPTLTGSLEKVREQVQA---AHA 155
Query: 393 EEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKASPYSFPG 438
+ ++E S+ + + +A +P + PG
Sbjct: 156 LGLTAVISSSIE---------SSLGLTQLARIAAWL---TPDTIPG 189
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 27.0 bits (59), Expect = 4.4
Identities = 11/64 (17%), Positives = 24/64 (37%)
Query: 304 LVARVAEDRTRVVCPVIDIISDVTFAYVRSFELHWGAFNWELHFRWYTYGSSDAIIKRKD 363
V R+ R V + D+ + T A++ ++ + F E+ + I+
Sbjct: 14 QVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATA 73
Query: 364 FTEP 367
+P
Sbjct: 74 VKDP 77
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 26.5 bits (58), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 154 VIRSPGRVGLIKARLLGARQAEGEILVFLDA 184
+ PG IK + GA Q +G ILV + A
Sbjct: 71 HVDCPGHADYIKNMITGAAQMDGAILV-VSA 100
Score = 26.5 bits (58), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 262 VIRSPGRVGLIKARLLGARQAEGEILVFLDA 292
+ PG IK + GA Q +G ILV + A
Sbjct: 71 HVDCPGHADYIKNMITGAAQMDGAILV-VSA 100
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 133
Score = 26.1 bits (57), Expect = 7.5
Identities = 26/128 (20%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 372 AMAGGLFAIDRAYFFHIGAYDEEMQVWGGENLEMSFRVWQCGGSIEIAPCSHVAHLFRKA 431
A AG A R F A E +++ + H + F
Sbjct: 14 AFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFV-----------HAKNHFIAL 62
Query: 432 SPYSFPGGVSEVLYGNLARVALVWMDEWAEFYFKFNPEAEKQRDKQAVRSRLELRKQLKC 491
NL E E Y +N AE Q +K+AVR+ + K
Sbjct: 63 GKL-------GKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKI 115
Query: 492 HSFKWYLT 499
H+ + Y
Sbjct: 116 HA-ELYRK 122
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 26.5 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 154 VIRSPGRVGLIKARLLGARQAEGEILVFLDA 184
VI +PG IK + G QA+ IL+ +
Sbjct: 88 VIDAPGHRDFIKNMITGTSQADCAILI-IAG 117
Score = 26.5 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 262 VIRSPGRVGLIKARLLGARQAEGEILVFLDA 292
VI +PG IK + G QA+ IL+ +
Sbjct: 88 VIDAPGHRDFIKNMITGTSQADCAILI-IAG 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.426
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,352,021
Number of extensions: 112623
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 39
Length of query: 605
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 514
Effective length of database: 1,158,166
Effective search space: 595297324
Effective search space used: 595297324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.1 bits)