BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10465
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P82|A Chain A, Cysteine Protease Atg4a
pdb|2P82|B Chain B, Cysteine Protease Atg4a
pdb|2P82|C Chain C, Cysteine Protease Atg4a
pdb|2P82|D Chain D, Cysteine Protease Atg4a
Length = 355
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 197/308 (63%), Gaps = 55/308 (17%)
Query: 14 QIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV 73
++ DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+ HLGRDW W
Sbjct: 40 KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEK 99
Query: 74 NSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDD 132
++ + Y +IL+ F DR+ YSIHQ+A G EGK++GEWFGPNTVAQVL+KLA +D+
Sbjct: 100 QKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDE 159
Query: 133 WSSIVFHVALDNTLVVNQVKKLC--------TTNKR-----ASSN---------PQWQPL 170
W+S+ +V++DNT+V+ +KK+C T R +SN W+PL
Sbjct: 160 WNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPL 219
Query: 171 VLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGV 230
+L++PLRLGI INPVY++ K+C F PQSLG
Sbjct: 220 LLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQSLGA 252
Query: 231 IGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQA-SRLHIL 289
+GGKPN+A YFIG++G+++IFLDPHT Q D E++ D T+HC Q+ R++IL
Sbjct: 253 LGGKPNNAYYFIGFLGDELIFLDPHTTQTF---VDTEENGTVN-DQTFHCLQSPQRMNIL 308
Query: 290 HMDPSIAV 297
++DPS+A+
Sbjct: 309 NLDPSVAL 316
>pdb|2D1I|A Chain A, Structure Of Human Atg4b
pdb|2D1I|B Chain B, Structure Of Human Atg4b
Length = 398
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 187/311 (60%), Gaps = 57/311 (18%)
Query: 13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
++I D+ SRLWFTYRK F IG +G T+D GWGCMLRCGQM+ AQAL+ HLGRDW+W
Sbjct: 45 DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 104
Query: 73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
++ ++Y +L F DR+ + YSIHQIA G EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 105 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 164
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
WSS+ H+A+DNT+V+ ++++LC T+ A++ P W
Sbjct: 165 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 224
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
+PLVL+IPLRLG+ DIN Y+ +K C F PQS
Sbjct: 225 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 257
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
LGVIGGKPN A YFIGYVG ++I+LDPHT Q + D D ++HC R+
Sbjct: 258 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV----EPTDGCFIPDESFHCQHPPCRM 313
Query: 287 HILHMDPSIAV 297
I +DPSIAV
Sbjct: 314 SIAELDPSIAV 324
>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b
Length = 396
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 187/311 (60%), Gaps = 57/311 (18%)
Query: 13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
++I D+ SRLWFTYRK F IG +G T+D GWGCMLRCGQM+ AQAL+ HLGRDW+W
Sbjct: 43 DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 102
Query: 73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
++ ++Y +L F DR+ + YSIHQIA G EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 103 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 162
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
WSS+ H+A+DNT+V+ ++++LC T+ A++ P W
Sbjct: 163 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 222
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
+PLVL+IPLRLG+ DIN Y+ +K C F PQS
Sbjct: 223 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 255
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
LGVIGGKPN A YFIGYVG ++I+LDPHT Q + D D ++HC R+
Sbjct: 256 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV----EPTDGCFIPDESFHCQHPPCRM 311
Query: 287 HILHMDPSIAV 297
I +DPSIAV
Sbjct: 312 SIAELDPSIAV 322
>pdb|2Z0D|A Chain A, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
pdb|2Z0E|A Chain A, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
Length = 357
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 186/311 (59%), Gaps = 57/311 (18%)
Query: 13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
++I D+ SRLWFTYRK F IG +G T+D GWGCMLRCGQM+ AQAL+ HLGRDW+W
Sbjct: 43 DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWT 102
Query: 73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
++ ++Y +L F DR+ + YSIHQIA G EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 103 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 162
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
WSS+ H+A+DNT+V+ ++++LC T+ A++ P W
Sbjct: 163 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 222
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
+PLVL+IPLRLG+ DIN Y+ +K C F PQS
Sbjct: 223 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 255
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
LGVIGGKPN A YFIGYVG ++I+LDP T Q + D D ++HC R+
Sbjct: 256 LGVIGGKPNSAHYFIGYVGEELIYLDPATTQPA----VEPTDGCFIPDESFHCQHPPCRM 311
Query: 287 HILHMDPSIAV 297
I +DPSIAV
Sbjct: 312 SIAELDPSIAV 322
>pdb|2ZZP|A Chain A, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 357
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 186/311 (59%), Gaps = 57/311 (18%)
Query: 13 EQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWN 72
++I D+ SRLWFTYRK F IG +G T+D GWG MLRCGQM+ AQAL+ HLGRDW+W
Sbjct: 43 DEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGSMLRCGQMIFAQALVCRHLGRDWRWT 102
Query: 73 VNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
++ ++Y +L F DR+ + YSIHQIA G EGK++G+W+GPNTVAQVL+KLA +D
Sbjct: 103 QRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFD 162
Query: 132 DWSSIVFHVALDNTLVVNQVKKLCTTN---KRASSNPQ---------------------W 167
WSS+ H+A+DNT+V+ ++++LC T+ A++ P W
Sbjct: 163 TWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPW 222
Query: 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQS 227
+PLVL+IPLRLG+ DIN Y+ +K C F PQS
Sbjct: 223 RPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMMPQS 255
Query: 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRL 286
LGVIGGKPN A YFIGYVG ++I+LDPHT Q + D D ++HC R+
Sbjct: 256 LGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPA----VEPTDGCFIPDESFHCQHPPCRM 311
Query: 287 HILHMDPSIAV 297
I +DPSIAV
Sbjct: 312 SIAELDPSIAV 322
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 38 GLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW-QWNVNSKEEAYLKILKMFEDRRTAPYS 96
G + D W C+ RC M QA + L G D W + KI + E+ T +
Sbjct: 116 GESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHR 175
Query: 97 IHQIALTG 104
++Q++ G
Sbjct: 176 LYQLSKAG 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,347,048
Number of Sequences: 62578
Number of extensions: 381812
Number of successful extensions: 970
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 7
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)