Query psy10465
Match_columns 309
No_of_seqs 113 out of 341
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 18:55:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03416 Peptidase_C54: Peptid 100.0 9E-100 2E-104 715.1 22.4 270 10-309 1-273 (278)
2 KOG2674|consensus 100.0 8.3E-97 2E-101 714.2 20.9 271 7-309 58-346 (409)
3 PF07910 Peptidase_C78: Peptid 98.5 8.6E-08 1.9E-12 88.2 4.2 32 228-260 149-185 (218)
4 KOG2433|consensus 98.4 1.6E-06 3.5E-11 85.7 10.2 90 40-159 403-499 (577)
5 KOG4696|consensus 94.9 0.013 2.9E-07 56.6 1.9 38 26-63 174-215 (393)
6 KOG4696|consensus 85.4 0.42 9.1E-06 46.5 1.4 22 40-61 124-145 (393)
7 KOG2674|consensus 77.6 0.41 8.9E-06 48.1 -1.7 98 38-156 135-263 (409)
8 PF13529 Peptidase_C39_2: Pept 55.6 18 0.00038 28.9 3.9 29 227-255 115-144 (144)
9 PF15644 Tox-PL: Papain fold t 37.2 31 0.00066 28.1 2.6 24 232-256 84-107 (111)
10 TIGR03795 chp_BMA0021 conserve 30.2 25 0.00054 29.7 1.0 41 10-50 29-75 (114)
11 COG4892 Predicted heme/steroid 25.2 75 0.0016 24.9 2.7 24 123-147 5-28 (81)
12 cd02549 Peptidase_C39A A sub-f 24.5 77 0.0017 25.6 2.9 27 231-257 89-116 (141)
13 PF04843 Herpes_teg_N: Herpesv 24.1 1.2E+02 0.0025 27.1 4.2 33 225-260 122-154 (172)
14 cd00419 Ferrochelatase_C Ferro 22.8 1.1E+02 0.0024 25.9 3.7 43 111-155 71-116 (135)
15 TIGR02572 LcrR type III secret 21.0 1.1E+02 0.0024 26.7 3.2 58 42-115 46-121 (139)
No 1
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=100.00 E-value=8.6e-100 Score=715.10 Aligned_cols=270 Identities=47% Similarity=0.911 Sum_probs=213.1
Q ss_pred HHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccCC-cchHHHHHHHHhhc
Q psy10465 10 QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVN-SKEEAYLKILKMFE 88 (309)
Q Consensus 10 ~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~-~~~~~~~~il~~F~ 88 (309)
++.|+|++|++|+||||||+|||||+++++|||+|||||||||||||||||++||+||+|++..+ +..+.+.+||+||.
T Consensus 1 ~~~~~~~~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCmlRs~QMlLAqaL~~~~lgr~~~~~~~~~~~~~~~~il~~F~ 80 (278)
T PF03416_consen 1 QNKEEFLKDFSSRIWFTYRKGFPPIPGSGLTSDCGWGCMLRSGQMLLAQALLRHHLGRDWRWPDNSDNNEEYRRILSLFQ 80 (278)
T ss_dssp TTHHHHHHHHHCSB---EEESS--TTTTS-SB-TTT-HHHHHHHHHHHHHHHHHHC-TT--TTTTSS--HHHHHHHHTTS
T ss_pred CcHHHHHHHHhhheEEeccCCCCCCCCCCcccCCCcccccchhHHHHHHHHHHHhhcccccccccccCcHHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999999999999999999999999765 66788999999999
Q ss_pred CCCCCCCcHHHHHHhhhhc-CCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCCCCCCCC
Q psy10465 89 DRRTAPYSIHQIALTGASE-GKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQW 167 (309)
Q Consensus 89 D~~~apfSIh~i~~~g~~~-gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~~~~~~~ 167 (309)
|+++||||||||+++|.+. |++||+||||+++|++|++|++...+.+++|||+.|++++.+|+.+.|...........|
T Consensus 81 D~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~~~~~l~v~v~~d~~i~~~d~~~~~~~~~~~~~~~~~ 160 (278)
T PF03416_consen 81 DSPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEADLSGLRVYVSSDGTIYYDDVEELCSNSNPTKQSSWW 160 (278)
T ss_dssp SSTTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC-TTT--EEEE-BTTEEEHHHHHHHHCCS-S-----CE
T ss_pred CCCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhccccCceEEEeeccccchhHHHHHHhhhccccccccC
Confidence 9999999999999999987 999999999999999999999988899999999999999999999998765433344567
Q ss_pred cceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCCccccccCceeEEeeCCcCeeeEEEEEecC
Q psy10465 168 QPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGN 247 (309)
Q Consensus 168 ~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~pqsvGIiGGrp~~A~YfvG~q~d 247 (309)
+|+|||||+|||++++||+|++.|+++ |++|||+|||||||++|+||||+|+|
T Consensus 161 ~~vLlliplrLGl~~in~~Y~~~l~~~---------------------------l~~pq~vGiiGG~p~~a~YfvG~~~d 213 (278)
T PF03416_consen 161 KPVLLLIPLRLGLDKINPKYIPSLKSL---------------------------LSLPQSVGIIGGRPNSALYFVGFQGD 213 (278)
T ss_dssp --EEEEEEEE-SSSS--GGGHHHHHHH---------------------------CCSTTEEEEEEEETTEEEEEEEEETT
T ss_pred ceEEEEEEeecCCCCCCHHHHHHHHHH---------------------------hCCcccceeeccCCCceEEEEEEccC
Confidence 999999999999999999999999999 99999999999999999999999999
Q ss_pred eEEeeCCCCcccccccCCcccccccCCCCceecCCCccccccccCcceEEEee-CCchhhccC
Q psy10465 248 DVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQ-RSYSDYKNV 309 (309)
Q Consensus 248 ~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~~~~~m~~~~lDPS~~lGFy-~s~~df~dl 309 (309)
+|||||||++|+|++......+ ...+||||+.+++|++++|||||++||| +|++||+||
T Consensus 214 ~liYLDPH~~Q~a~~~~~~~~~---~~~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~ 273 (278)
T PF03416_consen 214 QLIYLDPHYVQPAVDSQNNNFE---LDDSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDF 273 (278)
T ss_dssp EEEEE---SEEE-----TTS--------GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHH
T ss_pred eEEEECCCCCeeCCccCCCCCc---CCCCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHH
Confidence 9999999999999876544322 1147999999999999999999999999 999999975
No 2
>KOG2674|consensus
Probab=100.00 E-value=8.3e-97 Score=714.21 Aligned_cols=271 Identities=52% Similarity=1.035 Sum_probs=251.9
Q ss_pred CChHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccCCcc-hHHHHHHHH
Q psy10465 7 LSHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSK-EEAYLKILK 85 (309)
Q Consensus 7 ~~~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~-~~~~~~il~ 85 (309)
.+.++-|+|+.|+.||||||||+||+||+++++|||+|||||||||||||||||+++||||||+|.+++. ++.|..||+
T Consensus 58 is~~~~e~f~~D~~Sriw~TYR~~F~pig~t~~ttD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~ 137 (409)
T KOG2674|consen 58 ISTEESEEFLSDVSSRLWFTYRRGFSPIGGTGPTTDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILN 137 (409)
T ss_pred eccCHHHHHHHhhhhcceeeccCCCCcccCCCcccCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHH
Confidence 3444449999999999999999999999999999999999999999999999999999999999976655 778999999
Q ss_pred hhcCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcC------
Q psy10465 86 MFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNK------ 159 (309)
Q Consensus 86 ~F~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~------ 159 (309)
+|.|.+.+|||||||+++|+..++.+|+||||+++|+++++|..++.|+.+.+|+++|+.++++++.+.|....
T Consensus 138 ~F~D~~~a~~SiHq~~~~G~~~~~~~g~WfGP~~~a~~~~~L~~~~~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~ 217 (409)
T KOG2674|consen 138 LFEDEPDAPFSIHQIVQMGVGEGKAVGSWFGPNTVAQVLKKLARFDPWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTI 217 (409)
T ss_pred hhcCCCccccCHHHHHHHHhhccCCCccccCCcHHHHHHHHhhccCCCCCccEEEecccceEEeeeehhcccCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887641
Q ss_pred ---------CCCCCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCCccccccCceeEE
Q psy10465 160 ---------RASSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGV 230 (309)
Q Consensus 160 ---------~~~~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~pqsvGI 230 (309)
..+.+.+|||||||||+|||++++||.|+++||++ |++||||||
T Consensus 218 ~~~~~~~~~~~~~~~ewkpllLLVPvRLG~~~iNp~Yvp~lk~~---------------------------f~~~q~lGI 270 (409)
T KOG2674|consen 218 EDATKQSLEFSNGITEWKPLLLLIPLRLGITSINPSYVPALKEC---------------------------FEMPQSVGI 270 (409)
T ss_pred cccchhhcccCCCCCCCcceEEEEEeeecccccChHHHHHHHHH---------------------------hcchhhcee
Confidence 12346789999999999999999999999999999 999999999
Q ss_pred eeCCcCeeeEEEEEecCeEEeeCCCCcccccccCC-cccccccCCCCceecCCCccccccccCcceEEEee-CCchhhcc
Q psy10465 231 IGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYD-KEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQ-RSYSDYKN 308 (309)
Q Consensus 231 iGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~-~~~~~~~~~~~syhc~~~~~m~~~~lDPS~~lGFy-~s~~df~d 308 (309)
+||||+||+||||||||.|||||||++|+++++.. .+.+ ++||||+.+++|++.+||||||+||| ++++||++
T Consensus 271 ~GGkP~~S~YFvGyq~d~l~YLDPH~~Q~~V~vs~~~~~~-----~esfHC~~~~km~f~~mDPS~alGF~c~~~~dF~~ 345 (409)
T KOG2674|consen 271 IGGRPNHSLYFVGYQGDELFYLDPHYTQPAVEVSKAKDVP-----DETFHCQSLRKMAFEDMDPSLALGFYCKDEDDFDN 345 (409)
T ss_pred ccCCCCcceEEEEEecceEEEeCCccCcccccccccCCCC-----ccccccCchhhcchhhcCcceEEEEEecCHHHHHH
Confidence 99999999999999999999999999999998773 3333 68999999999999999999999999 99999987
Q ss_pred C
Q psy10465 309 V 309 (309)
Q Consensus 309 l 309 (309)
+
T Consensus 346 ~ 346 (409)
T KOG2674|consen 346 L 346 (409)
T ss_pred H
Confidence 4
No 3
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.
Probab=98.51 E-value=8.6e-08 Score=88.23 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred eEEeeCCcCeeeEEEEEec-----CeEEeeCCCCcccc
Q psy10465 228 LGVIGGKPNHALYFIGYVG-----NDVIFLDPHTNQNI 260 (309)
Q Consensus 228 vGIiGGrp~~A~YfvG~q~-----d~LiyLDPH~~Q~a 260 (309)
--++|| ..||.=|||+.- -+|+.||||++-.+
T Consensus 149 Piylqh-~ghS~TIvGie~~~~g~~~LLVlDP~~~~~~ 185 (218)
T PF07910_consen 149 PIYLQH-DGHSRTIVGIERNKDGEVNLLVLDPHYTGSD 185 (218)
T ss_dssp -EEEEE-TTEEEEEEEEEE-TT--EEEEEE-TT--S-S
T ss_pred CeEeCc-cccceEEEEEEECCCCCEEEEEECCCCCCHH
Confidence 345666 899999999974 38999999997764
No 4
>KOG2433|consensus
Probab=98.40 E-value=1.6e-06 Score=85.71 Aligned_cols=90 Identities=22% Similarity=0.388 Sum_probs=56.9
Q ss_pred cccccccccccchhhHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcCCCCCCCcHHHHHHhhh-hcCCCC------c
Q psy10465 40 TTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGA-SEGKAV------G 112 (309)
Q Consensus 40 tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~-~~gk~~------G 112 (309)
.-|.||||..||-|.+-....+. | -.++|---|+=++.++ ..+.|| -
T Consensus 403 idD~GWGCAYRSlQTIcSWFilq---G-----------------------YT~~pIPtHrEiQqaLvdi~DKpA~FVGSr 456 (577)
T KOG2433|consen 403 IDDSGWGCAYRSLQTICSWFILQ---G-----------------------YTDKPIPTHREIQQALVDIQDKPAKFVGSR 456 (577)
T ss_pred cccCCcchhhHhHHHHHHHHHHc---C-----------------------ccCCCCCcHHHHHHHHHhccCcccceeccc
Confidence 67999999999999876553321 1 1223333443333332 233333 3
Q ss_pred cccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcC
Q psy10465 113 EWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNK 159 (309)
Q Consensus 113 ~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~ 159 (309)
+|.|-+.+..+|..|.+-+ ..+.....|.-+.+.+++++....
T Consensus 457 QWIGStEis~vLn~ll~~~----skil~v~sGaEva~~~rELA~HFq 499 (577)
T KOG2433|consen 457 QWIGSTEISFVLNELLKLE----SKILAVNSGAEVAERVRELARHFQ 499 (577)
T ss_pred ceecchhHHHHHHHHhccc----eEEEEeccccHHHHHHHHHHHHhh
Confidence 8999999999999998643 223334467777777777776653
No 5
>KOG4696|consensus
Probab=94.93 E-value=0.013 Score=56.56 Aligned_cols=38 Identities=42% Similarity=0.625 Sum_probs=28.8
Q ss_pred eecCCCccCC----CCCCcccccccccccchhhHHHHHHHHH
Q psy10465 26 TYRKGFVPIG----DSGLTTDKGWGCMLRCGQMVIAQALLFL 63 (309)
Q Consensus 26 TYR~~F~~i~----~~~~tsD~GWGCmiRs~QMlLAqaL~~~ 63 (309)
..-+||.-|+ +...--|.||||..|+.|||++..|...
T Consensus 174 awnkGFDi~~ALH~D~R~~G~K~W~~~~~~~qml~s~gl~~~ 215 (393)
T KOG4696|consen 174 AWNKGFDIIEALHTDVRSLGDKGWGCGYRNFQMLDSEGLAQL 215 (393)
T ss_pred HHhcccchhhhhcccchhcccccccccchhHHHHHHHHHHhh
Confidence 4456776554 2345568999999999999999998653
No 6
>KOG4696|consensus
Probab=85.43 E-value=0.42 Score=46.49 Aligned_cols=22 Identities=45% Similarity=0.809 Sum_probs=19.1
Q ss_pred cccccccccccchhhHHHHHHH
Q psy10465 40 TTDKGWGCMLRCGQMVIAQALL 61 (309)
Q Consensus 40 tsD~GWGCmiRs~QMlLAqaL~ 61 (309)
.-|.||||.-|.+||.+|.-|.
T Consensus 124 ~~d~Gwgcgw~niqmq~shll~ 145 (393)
T KOG4696|consen 124 GIDRGWGCGWRNIQMQISHLLY 145 (393)
T ss_pred ccccccCccccchHHHHHHHHh
Confidence 3589999999999999999653
No 7
>KOG2674|consensus
Probab=77.65 E-value=0.41 Score=48.10 Aligned_cols=98 Identities=10% Similarity=0.015 Sum_probs=72.2
Q ss_pred CCcccccccccccchhhHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcCCCCCCCcHHHHHHhhhhcCCCCccccCH
Q psy10465 38 GLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGP 117 (309)
Q Consensus 38 ~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~gk~~G~WfGP 117 (309)
-++.+.+|+|+.+|.++|++.+.... +.+-+||.+++.|.+ +.+.+...++.++.|+++
T Consensus 135 il~~F~D~~~a~~SiHq~~~~G~~~~-----------------~~~g~WfGP~~~a~~----~~~L~~~~~~~~~~~~v~ 193 (409)
T KOG2674|consen 135 ILNLFEDEPDAPFSIHQIVQMGVGEG-----------------KAVGSWFGPNTVAQV----LKKLARFDPWSSLAVYVA 193 (409)
T ss_pred HHHhhcCCCccccCHHHHHHHHhhcc-----------------CCCccccCCcHHHHH----HHHhhccCCCCCccEEEe
Confidence 57899999999999999999987542 356789998887765 566666678999999999
Q ss_pred HHHHHHHHHHHhc-------------------------CCCCCeEEEEee------CCceeHHHHHHHhh
Q psy10465 118 NTVAQVLRKLAKY-------------------------DDWSSIVFHVAL------DNTLVVNQVKKLCT 156 (309)
Q Consensus 118 s~ia~~l~~L~~~-------------------------~~~~~l~v~v~~------d~~i~~~~i~~~~~ 156 (309)
-..+.++++.... .+|.++-+.|.. =|.+|++-|++.+.
T Consensus 194 ~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ewkpllLLVPvRLG~~~iNp~Yvp~lk~~f~ 263 (409)
T KOG2674|consen 194 MDNAVIIRDIVEKCRRGPLPALTIEDATKQSLEFSNGITEWKPLLLLIPLRLGITSINPSYVPALKECFE 263 (409)
T ss_pred cccceEEeeeehhcccCCcccceecccchhhcccCCCCCCCcceEEEEEeeecccccChHHHHHHHHHhc
Confidence 8887777655421 246666555543 35688888877544
No 8
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=55.64 E-value=18 Score=28.85 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=21.9
Q ss_pred eeEEeeCCcCeeeEEEEEecCe-EEeeCCC
Q psy10465 227 SLGVIGGKPNHALYFIGYVGND-VIFLDPH 255 (309)
Q Consensus 227 svGIiGGrp~~A~YfvG~q~d~-LiyLDPH 255 (309)
.-+.-++...|.+-++|+.++. +++.||.
T Consensus 115 ~~~~~~~~~~H~vvi~Gy~~~~~~~v~DP~ 144 (144)
T PF13529_consen 115 GDGYDGTYGGHYVVIIGYDEDGYVYVNDPW 144 (144)
T ss_dssp TEEEEE-TTEEEEEEEEE-SSE-EEEE-TT
T ss_pred CCCcCCCcCCEEEEEEEEeCCCEEEEeCCC
Confidence 3456677789999999999999 9999995
No 9
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=37.17 E-value=31 Score=28.11 Aligned_cols=24 Identities=38% Similarity=0.873 Sum_probs=16.7
Q ss_pred eCCcCeeeEEEEEecCeEEeeCCCC
Q psy10465 232 GGKPNHALYFIGYVGNDVIFLDPHT 256 (309)
Q Consensus 232 GGrp~~A~YfvG~q~d~LiyLDPH~ 256 (309)
||.+.|++..+ +++..+.||||=.
T Consensus 84 gg~~gHa~nvv-~~~G~i~~~D~Q~ 107 (111)
T PF15644_consen 84 GGGPGHAFNVV-NQNGKIVFLDPQS 107 (111)
T ss_dssp ----TTEEEEE-EE-SSEEEEBTTT
T ss_pred ccccceEEEEE-eCCCeEEEEeCCC
Confidence 44458999999 8888899999954
No 10
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=30.20 E-value=25 Score=29.67 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=26.6
Q ss_pred HHHHHHHHhccccE--EEeecCCCcc----CCCCCCccccccccccc
Q psy10465 10 QDLEQIRRDITSRL--WFTYRKGFVP----IGDSGLTTDKGWGCMLR 50 (309)
Q Consensus 10 ~~~e~~~~d~~s~i--wfTYR~~F~~----i~~~~~tsD~GWGCmiR 50 (309)
+-++++++|-+..| +|-||.-+.- ...++-+|+.||||-=+
T Consensus 29 aFr~eLl~DPk~~L~e~Fgy~~P~~v~l~v~E~~~d~~~~~~~~~~~ 75 (114)
T TIGR03795 29 EFKDELLADPVDALEKYFDYRCPWILDLKVTENSSDWTPYGWGAWTQ 75 (114)
T ss_pred HHHHHHHHCHHHHHHHHhCCCCCCceEEEEEecCCCCCccccccccc
Confidence 33455666666655 7889744331 12567889999998765
No 11
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=25.16 E-value=75 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCCCeEEEEeeCCcee
Q psy10465 123 VLRKLAKYDDWSSIVFHVALDNTLV 147 (309)
Q Consensus 123 ~l~~L~~~~~~~~l~v~v~~d~~i~ 147 (309)
.|+.|.+|+..++ ..||+.+|+||
T Consensus 5 TLEELs~ynG~nG-paYiA~~G~VY 28 (81)
T COG4892 5 TLEELSKYNGENG-PAYIAVNGTVY 28 (81)
T ss_pred cHHHHHhhcCCCC-CeEEEECCEEE
Confidence 4788999998877 89999999999
No 12
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=24.48 E-value=77 Score=25.58 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.4
Q ss_pred eeCCcCeeeEEEEEe-cCeEEeeCCCCc
Q psy10465 231 IGGKPNHALYFIGYV-GNDVIFLDPHTN 257 (309)
Q Consensus 231 iGGrp~~A~YfvG~q-~d~LiyLDPH~~ 257 (309)
.++..+|.+-++|+. ++.+++.||..-
T Consensus 89 ~~~~~gH~vVv~g~~~~~~~~i~DP~~~ 116 (141)
T cd02549 89 SITPSGHAMVVIGYDRKGNVYVNDPGGG 116 (141)
T ss_pred ccCCCCeEEEEEEEcCCCCEEEECCCCC
Confidence 356678999999999 889999999753
No 13
>PF04843 Herpes_teg_N: Herpesvirus tegument protein, N-terminal conserved region; InterPro: IPR006928 Herpesvirus UL36 encodes the largest herpes simplex virus protein, also designated VP1/2, which is a component of the virion tegument. The N-terminal domain, of approximately 500aa, encodes a ubiquitin-specific protease (USP) that belongs to MEROPS peptidase family C76 (UL36 deubiquitinylating peptidase, clan CA). It is conserved across the herpesviridae and accumulates as a cleavage product of UL36 during late viral replication []. The conservation of UL36-USP across all members of the herpesviridae and the absolute conservation of the active site residues imply that UL36-USP plays an important role the herpesvirus life cycle.
Probab=24.10 E-value=1.2e+02 Score=27.11 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=22.6
Q ss_pred CceeEEeeCCcCeeeEEEEEecCeEEeeCCCCcccc
Q psy10465 225 PQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNI 260 (309)
Q Consensus 225 pqsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a 260 (309)
++.+=++=|.-..|+|+- ++.++++|||-.-..
T Consensus 122 ~~y~l~t~g~~~~av~~~---~~~~yiFDPH~~~~~ 154 (172)
T PF04843_consen 122 PQYILVTIGALTIAVIRT---GDRYYIFDPHSRDDI 154 (172)
T ss_pred CcEEEEEECCceEEEEEe---CCcEEEECCCCCCCC
Confidence 444433444447777776 999999999996544
No 14
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=22.83 E-value=1.1e+02 Score=25.90 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=26.7
Q ss_pred CccccCHHHHHHHHHHHHhcCCCCCeEEE---EeeCCceeHHHHHHHh
Q psy10465 111 VGEWFGPNTVAQVLRKLAKYDDWSSIVFH---VALDNTLVVNQVKKLC 155 (309)
Q Consensus 111 ~G~WfGPs~ia~~l~~L~~~~~~~~l~v~---v~~d~~i~~~~i~~~~ 155 (309)
|++|.+|+ +..+|++|.+.. ...+.|. ...||.-...|+-..+
T Consensus 71 ~~~Wl~P~-~~~~l~~l~~~G-~~~i~v~p~gF~~D~~Etl~di~~e~ 116 (135)
T cd00419 71 PGEWLEPS-TDDALEELAKEG-VKNVVVVPIGFVSDHLETLYELDIEY 116 (135)
T ss_pred CCCCCCCC-HHHHHHHHHHcC-CCeEEEECCccccccHHHHHHHHHHH
Confidence 79999998 667788887632 2233222 3457776666664433
No 15
>TIGR02572 LcrR type III secretion system regulator LcrR. This protein is found in type III secretion operons and has been characterized in Yersinia as a regulator of the Low-Calcium Respone (LCR).
Probab=21.01 E-value=1.1e+02 Score=26.71 Aligned_cols=58 Identities=38% Similarity=0.652 Sum_probs=37.6
Q ss_pred cccccccccchh------------hHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcC-CCCCCCcHHHHHH-----h
Q psy10465 42 DKGWGCMLRCGQ------------MVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFED-RRTAPYSIHQIAL-----T 103 (309)
Q Consensus 42 D~GWGCmiRs~Q------------MlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D-~~~apfSIh~i~~-----~ 103 (309)
+-=|=||+|-.+ -|||+|-+. .+|.+|+.-.+- | -..+|.|=+++.+ +
T Consensus 46 ~rviI~lLrR~~~~~GL~NpFa~LylLae~~~~-~lg~~~~lyGnV-------------~vl~gS~ls~~Rl~~FY~rwt 111 (139)
T TIGR02572 46 ERVWIVLLRRVSQRRGLANPFAALYLLAEAAIA-LLGPDWRLYGNV-------------DVLAGSPLSSQRLARFYRRWT 111 (139)
T ss_pred CEEEEEEEEEcccccCcCCcHHHHHHHHHHHHh-hcCCCCEEEeee-------------eEecCCCCcHHHHHHHHHHHc
Confidence 445778887654 588998765 589999872211 1 1357888887775 4
Q ss_pred hhhcCCCCcccc
Q psy10465 104 GASEGKAVGEWF 115 (309)
Q Consensus 104 g~~~gk~~G~Wf 115 (309)
|.++ ..|| ||
T Consensus 112 GAse-~~~g-Wf 121 (139)
T TIGR02572 112 GASE-DQQG-WF 121 (139)
T ss_pred CCCC-CCCC-eE
Confidence 5553 3666 88
Done!