Query psy10465
Match_columns 309
No_of_seqs 113 out of 341
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:56:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p82_A Cysteine protease ATG4A 100.0 1E-103 5E-108 760.5 24.0 270 9-309 35-329 (355)
2 2cy7_A Cysteine protease APG4B 100.0 5E-101 2E-105 751.2 25.7 274 5-309 34-335 (396)
3 3oqc_A UFSP2, UFM1-specific pr 98.7 1.1E-07 3.6E-12 93.9 11.2 64 40-128 307-376 (481)
4 2z84_A UFSP1, UFM1-specific pr 98.6 1.5E-07 5E-12 85.3 10.7 61 40-128 41-107 (218)
5 1nxi_A Conserved hypothetical 20.6 20 0.0007 29.3 -0.1 9 44-52 117-125 (132)
6 2j7q_A MCMV tegument protein M 19.3 67 0.0023 28.9 3.0 32 225-259 131-162 (232)
7 2fu4_A Ferric uptake regulatio 16.5 2.7E+02 0.0093 19.4 5.4 49 78-130 17-65 (83)
8 3lqz_A HLA class II histocompa 13.5 1.4E+02 0.0047 24.9 3.4 29 228-256 10-38 (181)
9 1k8r_B Protein kinase BYR2; si 12.8 1.8E+02 0.0062 22.9 3.6 40 118-158 23-65 (110)
10 2b4l_A Glycine betaine-binding 12.0 46 0.0016 29.8 -0.1 16 39-54 15-30 (268)
No 1
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=100.00 E-value=1.4e-103 Score=760.53 Aligned_cols=270 Identities=50% Similarity=1.017 Sum_probs=250.4
Q ss_pred hHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccC-CcchHHHHHHHHhh
Q psy10465 9 HQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV-NSKEEAYLKILKMF 87 (309)
Q Consensus 9 ~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~-~~~~~~~~~il~~F 87 (309)
.+++|+|++||+||||||||+|||||+++++|||+|||||||||||||||||+++||||+|||.. ++.++.|.+||+||
T Consensus 35 ~~~~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLAqaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F 114 (355)
T 2p82_A 35 KTEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCF 114 (355)
T ss_dssp TTTHHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHHHHHHHHHTCTTCCTTSCSSCCHHHHHHHHTT
T ss_pred CcCHHHHHHHhhhcEEEEecCCCccCCCCCccCCCccceeeehhHHHHHHHHHHHhcCccccccccccccHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999999999999999999999999954 45678899999999
Q ss_pred cCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCC------
Q psy10465 88 EDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRA------ 161 (309)
Q Consensus 88 ~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~------ 161 (309)
.|+++|||||||||++|.++||+|||||||+++|++|++|++++++++++|||++||+++.+||.++|....+.
T Consensus 115 ~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~va~D~~v~~~di~~~c~~~~~~~~~~~~ 194 (355)
T 2p82_A 115 LDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGD 194 (355)
T ss_dssp SSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEEECBTTEEEHHHHHHHHEECCSCC-----
T ss_pred CCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhcccccCceEEEecCCcEeHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765321
Q ss_pred ----------------CCCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCCccccccC
Q psy10465 162 ----------------SSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFP 225 (309)
Q Consensus 162 ----------------~~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~f~~p 225 (309)
.....|+|+|||||+|||++++||+|++.||++ |++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~plLlliplRLGld~in~~Y~~~Lk~~---------------------------l~~p 247 (355)
T 2p82_A 195 RPPDSLTASNQSKGTSAYCSAWKPLLLIVPLRLGINQINPVYVDAFKEC---------------------------FKMP 247 (355)
T ss_dssp -----------------CCCEECCEEEEEEEECCSSSCCGGGHHHHHHH---------------------------HHST
T ss_pred ccccccccccccccccccccCCceEEEEEEeecCCCcCCHHHHHHHHHH---------------------------hCcc
Confidence 001258999999999999999999999999999 9999
Q ss_pred ceeEEeeCCcCeeeEEEEEecCeEEeeCCCCcccccccCCcccccccCCCCceecCC-CccccccccCcceEEEee-CCc
Q psy10465 226 QSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRLHILHMDPSIAVVSQ-RSY 303 (309)
Q Consensus 226 qsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~~-~~~m~~~~lDPS~~lGFy-~s~ 303 (309)
||+|||||||++|+||||+|+|+|||||||+||+|++..+.+..+ ++||||+. +++|++++|||||+|||| +|+
T Consensus 248 qsvGIiGGkP~~s~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~~~----~~sfhc~~~~~~m~~~~lDPS~~lGF~c~~~ 323 (355)
T 2p82_A 248 QSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVN----DQTFHCLQSPQRMNILNLDPSVALGFFCKEE 323 (355)
T ss_dssp TEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSCBC----CGGGBCCSSCEEEEGGGSCSEEEEEEEESSH
T ss_pred ccceEecCCCCceEEEEEEcCCEEEEeCCCCCcccccccccCcCC----CCceeeCCCcCcCchhhcCcceEEEEEECCH
Confidence 999999999999999999999999999999999999765543322 58999999 999999999999999999 999
Q ss_pred hhhccC
Q psy10465 304 SDYKNV 309 (309)
Q Consensus 304 ~df~dl 309 (309)
+||+|+
T Consensus 324 ~df~d~ 329 (355)
T 2p82_A 324 KDFDNW 329 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 2
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=100.00 E-value=5.4e-101 Score=751.20 Aligned_cols=274 Identities=52% Similarity=0.997 Sum_probs=247.4
Q ss_pred ccCC-hHHHHHHHHhccccEEEeecCCCccCCCCCCcccccccccccchhhHHHHHHHHHhccCCccccC-CcchHHHHH
Q psy10465 5 NKLS-HQDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNV-NSKEEAYLK 82 (309)
Q Consensus 5 ~~~~-~~~~e~~~~d~~s~iwfTYR~~F~~i~~~~~tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~-~~~~~~~~~ 82 (309)
++++ .++.++|++||+||||||||+|||||+++++|||+|||||||||||||||||+++||||+|||.. +++++.|.+
T Consensus 34 ~~y~~~~~~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLAqaL~~~~LGrdwr~~~~~~~~~~~~~ 113 (396)
T 2cy7_A 34 RKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFS 113 (396)
T ss_dssp EEECTTTCHHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHHHHHHHHHHTCTTCCCCTTSCCCHHHHH
T ss_pred cEecCCcCHHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHHHHHHHHHHhcccccccccccCcHHHHH
Confidence 3443 46789999999999999999999999999999999999999999999999999999999999964 445678999
Q ss_pred HHHhhcCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhcCCCCCeEEEEeeCCceeHHHHHHHhhhcCCC-
Q psy10465 83 ILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRA- 161 (309)
Q Consensus 83 il~~F~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~~~~~~l~v~v~~d~~i~~~~i~~~~~~~~~~- 161 (309)
||+||.|+++||||||||+++|.++||+||+||||+++|++|++|++++.+++++|||++|++|+.+||+++|....+.
T Consensus 114 Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~~~~~~l~v~va~D~~v~~~di~~~~~~~~~~~ 193 (396)
T 2cy7_A 114 VLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCA 193 (396)
T ss_dssp HHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTTCTTTCCEEEECCTTEEEHHHHHHHHBSSCCC-
T ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhcccccCceEEEecCCceeHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988753210
Q ss_pred -----------------------CCCCCCcceEEEeeeeccCCCCChhHHHHHHHhccCCCCCchhhhhhhcccccCCCC
Q psy10465 162 -----------------------SSNPQWQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTP 218 (309)
Q Consensus 162 -----------------------~~~~~~~~lllliPlRLGl~~iN~~Y~~~Lk~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (309)
.....|+|+|||||+|||++++||+|++.||++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlliplRLGld~iNp~Y~~~Lk~~------------------------ 249 (396)
T 2cy7_A 194 GATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHC------------------------ 249 (396)
T ss_dssp --------------------------CCBCCEEEEEEEECCSSSCCGGGHHHHHHH------------------------
T ss_pred cccccccccccccccccccccccccccCCcceEEEEEEeecCCcCCHHHHHHHHHH------------------------
Confidence 012459999999999999999999999999999
Q ss_pred ccccccCceeEEeeCCcCeeeEEEEEecCeEEeeCCCCcccccccCCcccccccCCCCceecCC-CccccccccCcceEE
Q psy10465 219 RYEFTFPQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASRLHILHMDPSIAV 297 (309)
Q Consensus 219 ~~~f~~pqsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~a~~~~~~~~~~~~~~~~syhc~~-~~~m~~~~lDPS~~l 297 (309)
|++|||+|||||||++|+||||+|+|+|||||||+||+|++..+..... ++||||+. +++|++++|||||+|
T Consensus 250 ---l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~~~----~~s~hc~~~~~~m~~~~mDPS~~l 322 (396)
T 2cy7_A 250 ---FMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIP----DESFHCQHPPCRMSIAELDPSIAV 322 (396)
T ss_dssp ---TSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCCCC----CGGGBCCSCCEEEEGGGSCSEEEE
T ss_pred ---hCCcccceEecCccCceEEEEEEeCCEEEeeCCCcccccccccccccCC----CcceeecCcccccchhhcCCceEE
Confidence 9999999999999999999999999999999999999998764432211 57999997 589999999999999
Q ss_pred Eee-CCchhhccC
Q psy10465 298 VSQ-RSYSDYKNV 309 (309)
Q Consensus 298 GFy-~s~~df~dl 309 (309)
||| +|++||+|+
T Consensus 323 GFyc~~~~Df~d~ 335 (396)
T 2cy7_A 323 GFFCKTEDDFNDW 335 (396)
T ss_dssp EEEESSHHHHHHH
T ss_pred EEEECCHHHHHHH
Confidence 999 999999874
No 3
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=98.66 E-value=1.1e-07 Score=93.95 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=47.0
Q ss_pred cccccccccccchhhHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcCCCCCCCcHHHHHHhhhhcCCCCc------c
Q psy10465 40 TTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVG------E 113 (309)
Q Consensus 40 tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~gk~~G------~ 113 (309)
.-|.||||..|+-|||+..-+.. | . .....-||.+|.++-...|.+|+ +
T Consensus 307 ~~D~GWGCGYRnlQtl~Swl~~q---~--y--------------------~~~~iPsi~~IQ~~Le~agDk~~~f~GSRk 361 (481)
T 3oqc_A 307 IDDNGWGSAYRSLQTICSWFRHQ---G--Y--------------------TERSIPTHREIQQALVDAGDKPATFVGSRQ 361 (481)
T ss_dssp BCCTTTCHHHHHHHHHHHHHHHT---T--S--------------------CCSCCCCHHHHHHHHHHHTSSCGGGTTCCC
T ss_pred CCCCCcccchhHHHHHHHHHHhc---C--C--------------------CCCCCCCHHHHHHHHHhccCCccccccccc
Confidence 47999999999999999985421 1 0 01235577777766555566665 9
Q ss_pred ccCHHHHHHHHHHHH
Q psy10465 114 WFGPNTVAQVLRKLA 128 (309)
Q Consensus 114 WfGPs~ia~~l~~L~ 128 (309)
|.|-..++.+|..+.
T Consensus 362 WIGT~Ev~~vL~~ll 376 (481)
T 3oqc_A 362 WIGSIEVQMVLNQLI 376 (481)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred eechHHHHHHHHHhc
Confidence 999999999998765
No 4
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=98.64 E-value=1.5e-07 Score=85.32 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=44.8
Q ss_pred cccccccccccchhhHHHHHHHHHhccCCccccCCcchHHHHHHHHhhcCCCCCCCcHHHHHHhhhhcCCCCc------c
Q psy10465 40 TTDKGWGCMLRCGQMVIAQALLFLHLGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVG------E 113 (309)
Q Consensus 40 tsD~GWGCmiRs~QMlLAqaL~~~~lgrdw~~~~~~~~~~~~~il~~F~D~~~apfSIh~i~~~g~~~gk~~G------~ 113 (309)
.-|.||||..|+-|||+.. + .. .....-||.+|.++-+..+.+++ +
T Consensus 41 ~~D~GWGCgYRnlQml~Sw---q-----~y--------------------~~~~iPsi~~IQ~~Le~awdkg~~~~GSrk 92 (218)
T 2z84_A 41 LDDRGWGCGYRTLQTLCSW---P-----GG--------------------QSSGVPGLPALQGALEAMGDKPPGFRGSRN 92 (218)
T ss_dssp CCCTTTCHHHHHHHHHHTT---T-----BT--------------------CCTTCCCHHHHHHHHHHTTSSCTTCTTCCC
T ss_pred cccCCcccchhhhHHHHhh---c-----cc--------------------cCCCCCCHHHHHHHHHHccccCCccccccc
Confidence 4789999999999999887 1 10 02235677777766555555443 8
Q ss_pred ccCHHHHHHHHHHHH
Q psy10465 114 WFGPNTVAQVLRKLA 128 (309)
Q Consensus 114 WfGPs~ia~~l~~L~ 128 (309)
|.|-..++.+|..|.
T Consensus 93 WIGt~E~~~~l~sll 107 (218)
T 2z84_A 93 WIGCVEASLCLEHFG 107 (218)
T ss_dssp CCCHHHHHHHHHHTT
T ss_pred eechHHHHHHHHhhc
Confidence 999999999998865
No 5
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=20.64 E-value=20 Score=29.26 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=6.8
Q ss_pred cccccccch
Q psy10465 44 GWGCMLRCG 52 (309)
Q Consensus 44 GWGCmiRs~ 52 (309)
||||++-..
T Consensus 117 GWGt~~~~~ 125 (132)
T 1nxi_A 117 GWGTYYEGL 125 (132)
T ss_dssp EEEECCCCC
T ss_pred CcceEEEcc
Confidence 899987543
No 6
>2j7q_A MCMV tegument protein M48 encoded ubiquitin- SPEC protease, M48USP; herpesviridae, nuclear protein; HET: PG4; 1.8A {Murine cytomegalovirus} SCOP: d.3.1.20 PDB: 2j7q_C*
Probab=19.26 E-value=67 Score=28.95 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=24.5
Q ss_pred CceeEEeeCCcCeeeEEEEEecCeEEeeCCCCccc
Q psy10465 225 PQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQN 259 (309)
Q Consensus 225 pqsvGIiGGrp~~A~YfvG~q~d~LiyLDPH~~Q~ 259 (309)
|.++=|+=|.-..|+|+ .++.++++|||..-.
T Consensus 131 ~~y~Liiig~~~~Ai~r---~~d~~yiFDPH~~~~ 162 (232)
T 2j7q_A 131 PVYIIVTVGVHTRGVIV---ARGATYVFDPHTTDL 162 (232)
T ss_dssp CEEEEEEETTEEEEEEE---CSSCEEEEECSCBTT
T ss_pred CeEEEEEECCceEEEEE---eCCeEEEECCCCCCC
Confidence 44666666677788885 699999999999653
No 7
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=16.54 E-value=2.7e+02 Score=19.39 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHhhhhcCCCCccccCHHHHHHHHHHHHhc
Q psy10465 78 EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKY 130 (309)
Q Consensus 78 ~~~~~il~~F~D~~~apfSIh~i~~~g~~~gk~~G~WfGPs~ia~~l~~L~~~ 130 (309)
+....|+..+...+..|+|+..|++.....+.. .+++||-+.|+.|.+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~----is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHC
Confidence 456789999987643689999999875443322 4889999999999853
No 8
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune, disulfide bond, glycoprotein, immune respo membrane, MHC II, transmembrane, immune system; HET: NAG NDG; 3.25A {Homo sapiens}
Probab=13.50 E-value=1.4e+02 Score=24.94 Aligned_cols=29 Identities=3% Similarity=0.257 Sum_probs=22.1
Q ss_pred eEEeeCCcCeeeEEEEEecCeEEeeCCCC
Q psy10465 228 LGVIGGKPNHALYFIGYVGNDVIFLDPHT 256 (309)
Q Consensus 228 vGIiGGrp~~A~YfvG~q~d~LiyLDPH~ 256 (309)
+.+.+--.....|.+||.|+.++|+|--.
T Consensus 10 ~~~~~~~~~~g~~~~~~DGee~~~~D~~~ 38 (181)
T 3lqz_A 10 AAFVQTHRPTGEFMFEFDEDEMFYVDLDK 38 (181)
T ss_dssp EEEEESSSSCEEEEEEETTEEEEEEETTT
T ss_pred EEEEeCCCCCeeEEEEECCceEEEEECCC
Confidence 34444444577888999999999999876
No 9
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=12.84 E-value=1.8e+02 Score=22.92 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEeeCCce---eHHHHHHHhhhc
Q psy10465 118 NTVAQVLRKLAKYDDWSSIVFHVALDNTL---VVNQVKKLCTTN 158 (309)
Q Consensus 118 s~ia~~l~~L~~~~~~~~l~v~v~~d~~i---~~~~i~~~~~~~ 158 (309)
.++|.+|++..- ++.+...|.|+..+.+ .-|+..++|...
T Consensus 23 ~~L~~ALkKF~l-edpskw~Vcvtqssr~~~it~e~f~~icr~~ 65 (110)
T 1k8r_B 23 KTLAIALKKFSL-EDASKFIVCVSQSSRIKLITEEEFKQICFNS 65 (110)
T ss_dssp HHHHHHHHHHTC-CCTTSEEEEEECSSSEEECCCC---------
T ss_pred HHHHHHHHHcCC-CChhHeEEEEecCceEEEecHhHHHHHHhCC
Confidence 567888887754 5566788999888764 456777788764
No 10
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=11.97 E-value=46 Score=29.82 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=11.3
Q ss_pred Ccccccccccccchhh
Q psy10465 39 LTTDKGWGCMLRCGQM 54 (309)
Q Consensus 39 ~tsD~GWGCmiRs~QM 54 (309)
+.-+.|||||..+-+|
T Consensus 15 ~gi~pG~g~~~~~~~~ 30 (268)
T 2b4l_A 15 IGIDPGSGIMSLTDKA 30 (268)
T ss_dssp ECCCTTSHHHHHHHHH
T ss_pred EecCCChhHHHHHHHH
Confidence 3467899999755444
Done!