RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10465
(309 letters)
>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54.
Length = 277
Score = 357 bits (917), Expect = e-124
Identities = 134/290 (46%), Positives = 176/290 (60%), Gaps = 34/290 (11%)
Query: 10 QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
LE D+ SR+WFTYR+GF PIG +G T+D GWGCMLR GQM++AQAL+ HLGRDW
Sbjct: 2 TGLEAFLSDVYSRIWFTYRRGFPPIGGTGFTSDCGWGCMLRTGQMLLAQALIIHHLGRDW 61
Query: 70 QWNVNSKEEA-YLKILKMFEDRRTAPYSIHQIALTGASE-GKAVGEWFGPNTVAQVLRKL 127
+W + + Y KIL F D AP+SIHQ G S GK GEWFGPNTVA++L+KL
Sbjct: 62 RWPAEKEPDEEYKKILAWFGDSPDAPFSIHQFVQMGKSLCGKKPGEWFGPNTVARILKKL 121
Query: 128 AKYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQWQPLVLVIPLRLGIQDINPVY 187
K+DDWS + +VA+D T+V + + + C+ W+PL+L+IPLRLGI INPVY
Sbjct: 122 VKFDDWSGLAVYVAMDGTVVYDDIVEKCSAPNNGQ--SAWKPLLLLIPLRLGIDKINPVY 179
Query: 188 INGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQSLGVIGGKPNHALYFIGYVGN 247
I +K+C F+ PQS+G+IGGKPN +LYF+G+ G+
Sbjct: 180 IEALKEC---------------------------FSLPQSVGIIGGKPNQSLYFVGFQGD 212
Query: 248 DVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAV 297
++I+LDPHT Q Q D TYHC +LH MDPS+A+
Sbjct: 213 ELIYLDPHTVQEAV---TVNQKGFPVDDETYHCRSLRKLHFSDMDPSLAI 259
>gnl|CDD|216677 pfam01747, ATP-sulfurylase, ATP-sulfurylase. This domain is the
catalytic domain of ATP-sulfurylase or sulfate
adenylyltransferase EC:2.7.7.4 some of which are part of
a bifunctional polypeptide chain associated with
adenosyl phosphosulphate (APS) kinase pfam01583. Both
enzymes are required for PAPS
(phosphoadenosine-phosphosulfate) synthesis from
inorganic sulphate. ATP sulfurylase catalyzes the
synthesis of adenosine-phosphosulfate APS from ATP and
inorganic sulphate.
Length = 214
Score = 29.9 bits (68), Expect = 1.3
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 73 VNSKEEAYLKILKMFEDRRTAPYSIH-QIALTG------ASEGKAVGEWFGPNTVAQVLR 125
V +E Y K +T P+ +I+L+G EG+ EWF VA+VLR
Sbjct: 152 VPFREAVYCKKCGEMVSTKTCPHGKEDRISLSGTKLREMLREGEEPPEWFSRPEVAKVLR 211
Query: 126 K 126
+
Sbjct: 212 E 212
>gnl|CDD|240726 cd12280, RRM_FET, RNA recognition motif in the FET family of
RNA-binding proteins. This subfamily corresponds to the
RRM of FET (previously TET) (FUS/TLS, EWS, TAF15) family
of RNA-binding proteins. This ubiquitously expressed
family of similarly structured proteins predominantly
localizing to the nuclear, includes FUS (also known as
TLS or Pigpen or hnRNP P2), EWS (also known as EWSR1),
TAF15 (also known as hTAFII68 or TAF2N or RPB56), and
Drosophila Cabeza (also known as SARFH). The
corresponding coding genes of these proteins are
involved in deleterious genomic rearrangements with
transcription factor genes in a variety of human
sarcomas and acute leukemias. All FET proteins interact
with each other and are therefore likely to be part of
the very same protein complexes, which suggests a
general bridging role for FET proteins coupling RNA
transcription, processing, transport, and DNA repair.
The FET proteins contain multiple copies of a degenerate
hexapeptide repeat motif at the N-terminus. The
C-terminal region consists of a conserved nuclear import
and retention signal (C-NLS), a putative zinc-finger
domain, and a conserved RNA recognition motif (RRM),
also known as RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), which is flanked by 3
arginine-glycine-glycine (RGG) boxes. FUS and EWS might
have similar sequence specificity; both bind
preferentially to GGUG-containing RNAs. FUS has also
been shown to bind strongly to human telomeric RNA and
to small low-copy-number RNAs tethered to the promoter
of cyclin D1. To date, nothing is known about the RNA
binding specificity of TAF15. .
Length = 81
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 67 RDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWF 115
R W + K++ D+ T P + S +A EWF
Sbjct: 30 RTWPPMI-----------KIYTDKETEPKGEATVTYDDPSAAQAAIEWF 67
>gnl|CDD|234618 PRK00078, PRK00078, Maf-like protein; Reviewed.
Length = 192
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 179 GIQDINPVYINGIKKCY----ALPISPVYDMVK 207
GIQ V++ I CY LP++ +Y M++
Sbjct: 154 GIQGKGGVFVEEINGCYYNVVGLPLNKLYKMLE 186
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 29.3 bits (67), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 9/31 (29%)
Query: 119 TVAQVLRKLAKYDDWSSIVFHVALDNTLVVN 149
TVAQV+RKL ++ A++ T+VV
Sbjct: 204 TVAQVVRKLEEHG---------AMEYTIVVA 225
>gnl|CDD|218921 pfam06167, MtfA, Phosphoenolpyruvate:glucose-phosphotransferase
regulator. MtfA (earlier known as YeeI) is a
transcription factor A that binds Mlc (make large
colonies), itself a repressor of glucose and hence a
protein important in regulation of the
phosphoenolpyruvate:glucose-phosphotransferase (ptsG)
system, the major glucose transporter in E.coli. Mlc is
a repressor of ptsG, and MtfA is found to bind and
inactivate Mlc with high affinity. The membrane-bound
protein EIICBGlc encoded by the ptsG gene is the major
glucose transporter in Escherichia coli.
Length = 248
Score = 28.3 bits (64), Expect = 4.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 6 KLSHQDLEQIRRDITSRLWFTYRKGFVPIGDSGLT-TDKGWGCMLRCGQMVIAQA-LLFL 63
+LS ++ +++R F K F G GL TD+ +R + AQA L L
Sbjct: 35 RLSAEERQRLRELAQ---LFLAEKEFTGAG--GLEVTDE-----MRV--TIAAQACLPLL 82
Query: 64 HLGRDW 69
+LG DW
Sbjct: 83 NLGLDW 88
>gnl|CDD|221278 pfam11864, DUF3384, Domain of unknown function (DUF3384). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 422 to 486 amino acids in length. This domain is
found associated with pfam02145.
Length = 470
Score = 28.4 bits (64), Expect = 5.9
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 194 CYA-LPISPVYDMVKILSSTYNM 215
Y +P + +Y +++L S N
Sbjct: 203 TYGDIPDASLYPCIEVLCSIVNS 225
>gnl|CDD|173895 cd00517, ATPS, ATP-sulfurylase. ATP-sulfurylase (ATPS), also known
as sulfate adenylate transferase, catalyzes the transfer
of an adenylyl group from ATP to sulfate, forming
adenosine 5'-phosphosulfate (APS). This reaction is
generally accompanied by a further reaction, catalyzed
by APS kinase, in which APS is phosphorylated to yield
3'-phospho-APS (PAPS). In some organisms the APS kinase
is a separate protein, while in others it is
incorporated with ATP sulfurylase in a bifunctional
enzyme that catalyzes both reactions. In bifunctional
proteins, the domain that performs the kinase activity
can be attached at the N-terminal end of the sulfurylase
unit or at the C-terminal end, depending on the
organism. While the reaction is ubiquitous among
organisms, the physiological role of the reaction
varies. In some organisms it is used to generate APS
from sulfate and ATP, while in others it proceeds in the
opposite direction to generate ATP from APS and
pyrophosphate. ATP sulfurylase can be a monomer, a
homodimer, or a homo-oligomer, depending on the
organism. ATPS belongs to a large superfamily of
nucleotidyltransferases that includes pantothenate
synthetase (PanC), phosphopantetheine
adenylyltransferase (PPAT), and the amino-acyl tRNA
synthetases. The enzymes of this family are structurally
similar and share a dinucleotide-binding domain.
Length = 353
Score = 28.0 bits (63), Expect = 7.3
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 73 VNSKEEAYLKILKMFEDRRTAPYSIHQIALTG------ASEGKAVGEWFGPNTVAQVLRK 126
V +E AY T P+ + ++G EG+ EWF VA+VLR+
Sbjct: 293 VPFREAAYCPKCDGMASEDTCPHGEDFLNISGTKLRKMLREGEKPPEWFMRPEVAKVLRE 352
>gnl|CDD|219241 pfam06958, Pyocin_S, S-type Pyocin. This family represents a
conserved region approximately 180 residues long within
bacterial S-type pyocins. Pyocins are polypeptide toxins
produced by, and active against, bacteria. S-type
pyocins cause cell death by DNA breakdown due to
endonuclease activity.
Length = 139
Score = 26.5 bits (59), Expect = 9.7
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 202 VYDMVKILSSTYNMQTPRYEFTFPQSLGVI 231
V D V + + + +T YEFT G
Sbjct: 39 VPDRVPVRQAVLDAETGVYEFTLDAVPGRT 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,683,286
Number of extensions: 1458785
Number of successful extensions: 1131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1125
Number of HSP's successfully gapped: 12
Length of query: 309
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 212
Effective length of database: 6,635,264
Effective search space: 1406675968
Effective search space used: 1406675968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)