RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10465
(309 letters)
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 334
Score = 310 bits (795), Expect = e-106
Identities = 134/312 (42%), Positives = 191/312 (61%), Gaps = 55/312 (17%)
Query: 10 QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
+ ++ DI++RLWFTYR+ F PIG +G ++D GWGCMLRCGQM++AQAL+ HLGRDW
Sbjct: 15 TEKSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDW 74
Query: 70 QWNVN-SKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLA 128
W + + Y +IL+ F DR+ YSIHQ+A G EGK++GEWFGPNTVAQVL+KLA
Sbjct: 75 SWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLA 134
Query: 129 KYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSN----------------------PQ 166
+D+W+S+ +V++DNT+V+ +KK+C ++
Sbjct: 135 LFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSA 194
Query: 167 WQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTFPQ 226
W+PL+L++PLRLGI INPVY++ K+C F PQ
Sbjct: 195 WKPLLLIVPLRLGINQINPVYVDAFKEC---------------------------FKMPQ 227
Query: 227 SLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-ASR 285
SLG +GGKPN+A YFIG++G+++IFLDPHT Q + + D T+HC Q R
Sbjct: 228 SLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVN----DQTFHCLQSPQR 283
Query: 286 LHILHMDPSIAV 297
++IL++DPS+A+
Sbjct: 284 MNILNLDPSVAL 295
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 308 bits (790), Expect = e-105
Identities = 138/314 (43%), Positives = 184/314 (58%), Gaps = 57/314 (18%)
Query: 10 QDLEQIRRDITSRLWFTYRKGFVPIGDSGLTTDKGWGCMLRCGQMVIAQALLFLHLGRDW 69
+ ++I D+ SRLWFTYRK F IG +G T+D GWGCMLRCGQM+ AQAL+ HLGRDW
Sbjct: 33 TEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDW 92
Query: 70 QWNVNSKE-EAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVLRKLA 128
+W ++ ++Y +L F DR+ + YSIHQIA G EGK++G+W+GPNTVAQVL+KLA
Sbjct: 93 RWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLA 152
Query: 129 KYDDWSSIVFHVALDNTLVVNQVKKLCTTNKRASSNPQ---------------------- 166
+D WSS+ H+A+DNT+V+ ++++LC T+ +
Sbjct: 153 VFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRP 212
Query: 167 --WQPLVLVIPLRLGIQDINPVYINGIKKCYALPISPVYDMVKILSSTYNMQTPRYEFTF 224
W+PLVL+IPLRLG+ DIN Y+ +K C F
Sbjct: 213 SPWRPLVLLIPLRLGLTDINEAYVETLKHC---------------------------FMM 245
Query: 225 PQSLGVIGGKPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQ-A 283
PQSLGVIGGKPN A YFIGYVG ++I+LDP T Q + D D ++HC
Sbjct: 246 PQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQP----AVEPTDGCFIPDESFHCQHPP 301
Query: 284 SRLHILHMDPSIAV 297
R+ I +DPSIAV
Sbjct: 302 CRMSIAELDPSIAV 315
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B
light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 27.4 bits (61), Expect = 0.98
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 234 KPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYH 279
N A + V + + I VY+ E+D + L Y
Sbjct: 73 NANQAFFL--LVNGHSM---VSVSTPISEVYESEKDEDGFLYMVYA 113
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain
{Thermus thermophilus [TaxId: 274]}
Length = 214
Score = 26.5 bits (58), Expect = 3.4
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 73 VNSKEEAYLKILKMFEDRRTAP--YSIHQIALTG------ASEGKAVGEWFGPNTVAQVL 124
V + + RT P + + A++ EGKA + +L
Sbjct: 151 VKVGAVFHCPLCGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPIL 210
Query: 125 RK 126
R+
Sbjct: 211 RR 212
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 235
Score = 26.5 bits (58), Expect = 3.9
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 106 SEGKAVGEWFGPNTVAQVLRKLAK 129
EG+ E F VL + K
Sbjct: 207 REGQKPPEGFMAPKAWTVLTEYYK 230
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 192
Score = 26.0 bits (57), Expect = 4.3
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 96 SIHQIALTGASEGKAVGEWFGPNTVAQVLRKLAKYD 131
S + + + VG +F ++V + D
Sbjct: 13 SENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMD 48
>d1igna2 a.4.1.6 (A:446-594) DNA-binding domain of rap1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 149
Score = 25.6 bits (56), Expect = 5.3
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 248 DVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVVSQRSYSDYK 307
D+ +DP T +++ ++D+ P A + MDP+ S+ +++ Y+
Sbjct: 23 DLFQIDPDTGRSLI----TDEDT----------PTAIARRNMTMDPNHVPGSEPNFAAYR 68
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
[TaxId: 2336]}
Length = 161
Score = 25.3 bits (55), Expect = 8.1
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 65 LGRDWQWNVNSKEEAYLKILKMFEDRRTAPYSIHQIALTGASEGKAVGEWFGPNTVAQVL 124
LG Q V + I++ + +I + L S +
Sbjct: 41 LGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-NRISGLENERGFVGYA 99
Query: 125 RKLAKYDDWSSIVFHVALDNTLVVN 149
L K+ ++ N++VV
Sbjct: 100 VDLVKFPSDLEVLGGFLFGNSVVVE 124
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 24.7 bits (54), Expect = 8.4
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 234 KPNHALYFIGYVGNDVIFLDPHTNQNIGCVYDKEQDSEKKLDSTYH 279
+ AL+F +V N + P T+ +G +Y + + + L Y
Sbjct: 73 RAEDALFF--FVNNVI----PPTSATMGQLYQEHHEEDFFLYIAYS 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,188,626
Number of extensions: 54607
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 12
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)