Query psy10467
Match_columns 304
No_of_seqs 240 out of 2039
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:57:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4211|consensus 100.0 1.4E-29 3E-34 231.3 12.4 171 1-227 18-188 (510)
2 TIGR01659 sex-lethal sex-letha 100.0 5.8E-28 1.3E-32 221.8 15.5 155 1-221 115-275 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.4E-27 7.4E-32 218.9 19.8 155 1-221 11-171 (352)
4 TIGR01645 half-pint poly-U bin 99.9 1.1E-26 2.3E-31 224.4 14.5 165 2-221 116-284 (612)
5 KOG0117|consensus 99.9 5.3E-26 1.2E-30 205.3 14.6 207 1-225 91-335 (506)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.5E-25 5.5E-30 206.4 17.6 203 18-222 104-350 (352)
7 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-25 2.8E-30 215.5 16.1 166 1-220 97-265 (457)
8 TIGR01628 PABP-1234 polyadenyl 99.9 2.6E-25 5.7E-30 218.5 16.2 153 2-218 9-164 (562)
9 KOG0145|consensus 99.9 2.1E-25 4.6E-30 188.9 12.0 154 2-221 50-209 (360)
10 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-24 2.5E-29 209.9 17.7 204 1-222 66-308 (578)
11 KOG0148|consensus 99.9 4E-24 8.6E-29 182.2 13.5 170 5-221 65-238 (321)
12 TIGR01628 PABP-1234 polyadenyl 99.9 3.9E-24 8.5E-29 210.2 15.6 167 17-222 192-365 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.6E-23 1.4E-27 199.2 15.9 188 1-221 183-375 (509)
14 KOG0127|consensus 99.9 2.6E-23 5.7E-28 191.8 12.2 184 1-224 13-199 (678)
15 KOG0144|consensus 99.9 1.7E-23 3.7E-28 188.4 9.0 150 17-222 48-207 (510)
16 KOG4211|consensus 99.9 1.8E-22 4E-27 184.8 14.2 213 1-225 111-362 (510)
17 KOG0127|consensus 99.9 1.3E-22 2.9E-27 187.2 13.2 211 1-221 125-378 (678)
18 KOG1365|consensus 99.9 4E-23 8.7E-28 183.4 6.4 193 1-224 169-365 (508)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.2E-20 4.9E-25 180.0 20.2 78 140-222 273-352 (481)
20 KOG0145|consensus 99.9 1.3E-20 2.8E-25 160.0 14.1 211 5-220 130-357 (360)
21 KOG0131|consensus 99.8 6.5E-21 1.4E-25 154.0 10.4 164 4-223 11-179 (203)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.8 2.2E-20 4.7E-25 181.6 14.8 178 17-223 309-504 (509)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 3.8E-20 8.2E-25 178.5 15.9 181 15-220 288-479 (481)
24 KOG4205|consensus 99.8 3.7E-21 8.1E-26 172.3 6.9 166 12-228 15-183 (311)
25 KOG0123|consensus 99.8 2.7E-19 5.8E-24 165.5 15.6 145 15-225 10-157 (369)
26 TIGR01622 SF-CC1 splicing fact 99.8 6.2E-19 1.3E-23 169.2 17.1 202 18-223 201-450 (457)
27 KOG0147|consensus 99.8 9.7E-20 2.1E-24 169.0 9.1 164 15-221 191-358 (549)
28 KOG0124|consensus 99.8 7.6E-19 1.7E-23 155.5 12.2 164 12-221 122-290 (544)
29 KOG1365|consensus 99.8 2E-19 4.3E-24 160.1 5.9 223 11-286 68-295 (508)
30 KOG0110|consensus 99.7 7.3E-18 1.6E-22 160.5 10.3 166 10-223 522-695 (725)
31 PLN03134 glycine-rich RNA-bind 99.7 1.3E-16 2.8E-21 129.2 13.5 81 140-221 32-114 (144)
32 KOG0107|consensus 99.7 2.9E-15 6.3E-20 120.7 13.2 78 140-222 8-86 (195)
33 TIGR01659 sex-lethal sex-letha 99.6 8.2E-16 1.8E-20 141.6 11.2 79 140-219 105-185 (346)
34 KOG4207|consensus 99.6 1.6E-15 3.6E-20 125.1 11.7 81 140-221 11-93 (256)
35 KOG0123|consensus 99.6 4.4E-16 9.5E-21 144.2 9.3 168 17-223 181-351 (369)
36 KOG0109|consensus 99.6 8.2E-16 1.8E-20 132.9 9.7 147 1-221 1-150 (346)
37 KOG4212|consensus 99.6 8.1E-15 1.7E-19 132.8 14.5 208 1-220 52-293 (608)
38 PF00076 RRM_1: RNA recognitio 99.6 2.2E-15 4.8E-20 106.3 8.1 69 145-214 1-70 (70)
39 KOG0146|consensus 99.6 1.4E-14 2.9E-19 124.0 12.8 84 140-224 283-368 (371)
40 PF14259 RRM_6: RNA recognitio 99.6 1.5E-14 3.4E-19 102.4 8.5 69 145-214 1-70 (70)
41 KOG0125|consensus 99.6 1E-14 2.2E-19 128.0 8.7 82 140-223 94-176 (376)
42 TIGR01645 half-pint poly-U bin 99.6 1.7E-14 3.7E-19 140.1 11.0 76 140-216 105-182 (612)
43 PLN03120 nucleic acid binding 99.5 2.7E-14 5.8E-19 124.1 10.4 76 142-220 4-79 (260)
44 KOG0105|consensus 99.5 1.2E-12 2.7E-17 106.5 17.9 166 4-209 8-176 (241)
45 TIGR01648 hnRNP-R-Q heterogene 99.5 6.8E-14 1.5E-18 135.6 12.3 75 140-215 56-132 (578)
46 KOG0144|consensus 99.5 6.3E-14 1.4E-18 127.0 10.4 80 140-220 422-503 (510)
47 KOG0149|consensus 99.5 2.4E-14 5.1E-19 120.7 6.6 80 140-220 10-90 (247)
48 KOG0148|consensus 99.5 4.6E-14 1E-18 121.0 8.4 79 142-221 62-142 (321)
49 PLN03121 nucleic acid binding 99.5 9.9E-14 2.1E-18 118.8 9.7 78 140-220 3-80 (243)
50 KOG0122|consensus 99.5 1.2E-13 2.6E-18 117.0 9.4 81 140-221 187-269 (270)
51 KOG0121|consensus 99.5 7E-14 1.5E-18 107.1 7.2 80 140-220 34-115 (153)
52 KOG4307|consensus 99.5 1.3E-13 2.9E-18 131.1 8.2 191 15-223 323-516 (944)
53 KOG0105|consensus 99.5 7.6E-13 1.6E-17 107.7 11.0 78 140-220 4-82 (241)
54 KOG0110|consensus 99.4 3.5E-13 7.5E-18 128.9 10.1 74 145-219 518-596 (725)
55 KOG0130|consensus 99.4 3E-13 6.4E-18 104.6 7.6 80 140-220 70-151 (170)
56 KOG0106|consensus 99.4 4.5E-13 9.8E-18 113.6 8.4 153 12-215 10-165 (216)
57 KOG0111|consensus 99.4 2.3E-13 4.9E-18 113.5 5.7 88 140-228 8-97 (298)
58 KOG0147|consensus 99.4 2.3E-12 4.9E-17 120.4 12.7 199 16-221 291-528 (549)
59 smart00362 RRM_2 RNA recogniti 99.4 1.7E-12 3.7E-17 90.9 8.7 70 144-215 1-71 (72)
60 PLN03213 repressor of silencin 99.4 9.3E-13 2E-17 121.3 9.0 78 140-221 8-88 (759)
61 KOG0113|consensus 99.4 9E-12 1.9E-16 108.4 12.5 81 140-221 99-181 (335)
62 PLN03134 glycine-rich RNA-bind 99.3 3.5E-12 7.7E-17 103.3 8.2 67 16-82 47-116 (144)
63 KOG0126|consensus 99.3 1.5E-13 3.3E-18 111.4 -0.2 79 140-219 33-113 (219)
64 KOG0114|consensus 99.3 7.3E-12 1.6E-16 92.6 8.1 79 140-221 16-95 (124)
65 smart00360 RRM RNA recognition 99.3 9E-12 1.9E-16 86.8 7.9 68 147-215 1-70 (71)
66 KOG0131|consensus 99.3 2.9E-12 6.3E-17 104.1 5.9 79 140-219 7-87 (203)
67 cd00590 RRM RRM (RNA recogniti 99.3 1.6E-11 3.4E-16 86.4 9.0 72 144-216 1-73 (74)
68 KOG0108|consensus 99.3 5.5E-12 1.2E-16 118.1 8.5 78 143-221 19-98 (435)
69 COG0724 RNA-binding proteins ( 99.3 1.3E-11 2.8E-16 108.9 9.3 78 142-220 115-194 (306)
70 PF14259 RRM_6: RNA recognitio 99.2 1.2E-11 2.6E-16 87.4 4.2 64 1-73 6-70 (70)
71 KOG4212|consensus 99.2 5.3E-11 1.2E-15 108.3 8.9 80 140-220 42-123 (608)
72 KOG0117|consensus 99.2 6.5E-11 1.4E-15 108.1 8.8 80 140-220 81-163 (506)
73 smart00361 RRM_1 RNA recogniti 99.2 1.1E-10 2.4E-15 82.7 7.4 59 156-215 2-69 (70)
74 KOG4307|consensus 99.2 5.2E-10 1.1E-14 107.0 13.5 137 140-285 309-448 (944)
75 PF00076 RRM_1: RNA recognitio 99.1 4.1E-11 8.9E-16 84.2 3.3 64 1-73 6-70 (70)
76 KOG0109|consensus 99.1 8.5E-11 1.8E-15 102.1 5.6 71 143-221 3-74 (346)
77 KOG1548|consensus 99.1 2.6E-09 5.6E-14 95.0 14.1 197 2-221 143-352 (382)
78 KOG1190|consensus 99.1 1.3E-09 2.9E-14 98.6 12.4 179 2-219 307-489 (492)
79 KOG0124|consensus 99.1 8.7E-11 1.9E-15 104.8 4.5 76 140-216 111-188 (544)
80 PF13893 RRM_5: RNA recognitio 99.1 5.7E-10 1.2E-14 75.3 7.3 55 159-218 1-56 (56)
81 PLN03120 nucleic acid binding 99.0 2.2E-10 4.9E-15 99.8 4.9 69 1-80 12-80 (260)
82 KOG0226|consensus 99.0 2.2E-10 4.9E-15 97.7 4.7 148 22-220 118-269 (290)
83 KOG4206|consensus 99.0 1.8E-08 3.9E-13 85.1 13.9 186 20-218 30-219 (221)
84 KOG0125|consensus 99.0 4.5E-10 9.7E-15 99.1 4.4 73 1-83 104-177 (376)
85 COG0724 RNA-binding proteins ( 99.0 3E-09 6.5E-14 93.7 9.5 156 2-201 124-284 (306)
86 KOG0120|consensus 98.9 2.3E-09 5E-14 101.4 8.5 182 1-222 183-370 (500)
87 smart00360 RRM RNA recognition 98.9 1.6E-09 3.5E-14 75.2 4.6 65 1-74 4-70 (71)
88 KOG0149|consensus 98.9 6.4E-10 1.4E-14 94.1 2.4 67 11-77 20-88 (247)
89 PLN03121 nucleic acid binding 98.9 1.6E-09 3.5E-14 93.1 4.7 69 2-81 14-82 (243)
90 KOG0415|consensus 98.9 2.9E-09 6.3E-14 94.9 6.3 82 138-220 235-318 (479)
91 KOG0126|consensus 98.9 3.8E-10 8.2E-15 91.8 0.4 69 1-78 43-113 (219)
92 KOG0129|consensus 98.9 2E-08 4.4E-13 93.7 11.5 171 2-218 268-451 (520)
93 smart00361 RRM_1 RNA recogniti 98.9 8.6E-09 1.9E-13 72.9 6.6 57 18-74 3-69 (70)
94 KOG0533|consensus 98.9 1.1E-08 2.4E-13 88.8 8.7 83 140-223 81-164 (243)
95 KOG4205|consensus 98.8 2.9E-09 6.3E-14 96.0 5.1 83 141-224 5-88 (311)
96 KOG4208|consensus 98.8 1.2E-08 2.5E-13 85.0 7.5 81 140-221 47-130 (214)
97 smart00362 RRM_2 RNA recogniti 98.8 6.5E-09 1.4E-13 72.4 4.0 56 18-74 14-71 (72)
98 KOG1457|consensus 98.8 2.7E-07 5.8E-12 77.8 13.7 65 140-208 208-273 (284)
99 KOG4209|consensus 98.7 5.7E-08 1.2E-12 84.5 9.3 81 140-221 99-180 (231)
100 KOG0113|consensus 98.7 1.3E-08 2.8E-13 88.9 5.0 69 12-80 110-181 (335)
101 KOG0128|consensus 98.7 4.6E-09 9.9E-14 102.9 2.4 132 17-221 681-815 (881)
102 KOG0106|consensus 98.7 2.7E-08 5.9E-13 84.6 6.7 119 143-293 2-121 (216)
103 cd00590 RRM RRM (RNA recogniti 98.7 1.8E-08 4E-13 70.4 4.8 65 2-75 8-73 (74)
104 KOG4207|consensus 98.7 5.5E-09 1.2E-13 86.8 2.1 68 10-77 20-90 (256)
105 KOG0120|consensus 98.7 2.8E-08 6.1E-13 94.1 7.1 159 31-222 318-493 (500)
106 KOG1190|consensus 98.7 2.1E-06 4.6E-11 78.2 18.3 78 142-224 297-376 (492)
107 KOG0153|consensus 98.7 6.3E-08 1.4E-12 86.3 8.1 76 139-220 225-302 (377)
108 PF13893 RRM_5: RNA recognitio 98.7 5.7E-08 1.2E-12 65.4 6.1 53 20-76 1-55 (56)
109 KOG4210|consensus 98.7 5.1E-08 1.1E-12 87.5 7.2 157 18-221 103-264 (285)
110 KOG4661|consensus 98.7 5.7E-08 1.2E-12 91.5 7.5 81 140-221 403-485 (940)
111 KOG0146|consensus 98.6 5.4E-08 1.2E-12 83.9 6.5 82 140-222 17-102 (371)
112 KOG0132|consensus 98.6 6.9E-08 1.5E-12 93.9 8.0 80 140-225 419-499 (894)
113 KOG4206|consensus 98.6 1.3E-07 2.8E-12 80.0 7.8 77 142-221 9-90 (221)
114 KOG0122|consensus 98.6 1.2E-07 2.5E-12 80.9 7.4 65 15-79 201-268 (270)
115 KOG0116|consensus 98.6 2.2E-07 4.8E-12 87.0 9.9 78 142-220 288-366 (419)
116 KOG0121|consensus 98.6 4.9E-08 1.1E-12 75.3 3.5 65 3-76 46-112 (153)
117 KOG0108|consensus 98.6 5.9E-08 1.3E-12 91.3 4.8 72 1-81 26-99 (435)
118 KOG0107|consensus 98.5 7E-08 1.5E-12 78.3 3.8 60 18-81 25-86 (195)
119 KOG4454|consensus 98.5 4.4E-08 9.5E-13 82.2 1.9 78 140-219 7-85 (267)
120 PLN03213 repressor of silencin 98.5 9.2E-08 2E-12 88.8 3.8 67 1-79 18-87 (759)
121 KOG1548|consensus 98.5 4.9E-07 1.1E-11 80.7 7.5 82 140-221 132-221 (382)
122 KOG1457|consensus 98.4 1.7E-06 3.7E-11 73.0 10.0 81 140-221 32-118 (284)
123 KOG1456|consensus 98.4 1.2E-05 2.6E-10 72.6 15.1 171 15-210 300-474 (494)
124 KOG0130|consensus 98.4 1.7E-07 3.7E-12 72.9 2.8 64 16-79 85-151 (170)
125 KOG0111|consensus 98.4 3.6E-07 7.9E-12 76.7 4.5 79 5-84 13-94 (298)
126 KOG4208|consensus 98.3 4.7E-07 1E-11 75.5 3.7 60 17-76 63-126 (214)
127 KOG1456|consensus 98.2 8.6E-05 1.9E-09 67.2 15.3 79 138-221 283-363 (494)
128 KOG0114|consensus 98.0 6E-06 1.3E-10 61.5 3.7 65 1-76 26-91 (124)
129 KOG4660|consensus 98.0 5.6E-06 1.2E-10 78.3 4.1 70 140-214 73-143 (549)
130 PF04059 RRM_2: RNA recognitio 97.9 0.0001 2.2E-09 55.2 8.7 77 143-220 2-86 (97)
131 KOG1995|consensus 97.9 1E-05 2.3E-10 72.8 3.8 82 140-221 64-154 (351)
132 KOG4454|consensus 97.9 5.8E-06 1.3E-10 69.6 1.8 121 17-208 23-150 (267)
133 KOG4209|consensus 97.9 1.5E-05 3.2E-10 69.4 4.5 65 3-76 111-176 (231)
134 KOG0151|consensus 97.7 6.5E-05 1.4E-09 73.0 6.6 80 140-220 172-256 (877)
135 PF08777 RRM_3: RNA binding mo 97.7 7.4E-05 1.6E-09 57.1 5.6 70 143-218 2-77 (105)
136 KOG0153|consensus 97.7 2.6E-05 5.7E-10 69.9 3.1 62 4-79 239-302 (377)
137 KOG0226|consensus 97.6 2.7E-05 5.9E-10 67.0 2.3 70 8-77 189-267 (290)
138 KOG0533|consensus 97.6 6.8E-05 1.5E-09 65.4 4.3 64 18-81 98-163 (243)
139 PF11608 Limkain-b1: Limkain b 97.6 0.00042 9E-09 49.9 7.1 68 143-219 3-75 (90)
140 KOG0415|consensus 97.5 0.0001 2.3E-09 66.3 4.4 69 13-81 249-320 (479)
141 KOG0132|consensus 97.4 0.00013 2.8E-09 71.7 3.7 68 2-83 430-498 (894)
142 KOG0128|consensus 97.3 2E-05 4.3E-10 78.0 -2.6 144 19-209 588-735 (881)
143 KOG0116|consensus 97.2 0.00077 1.7E-08 63.5 6.1 67 2-76 297-363 (419)
144 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0006 1.3E-08 51.4 4.3 78 141-219 5-90 (100)
145 KOG0115|consensus 97.1 0.0017 3.6E-08 56.3 7.1 76 143-219 32-112 (275)
146 KOG0112|consensus 97.1 0.0013 2.8E-08 65.9 7.2 140 18-221 387-531 (975)
147 COG5175 MOT2 Transcriptional r 97.1 0.0013 2.8E-08 59.0 6.1 80 140-220 112-202 (480)
148 PF08952 DUF1866: Domain of un 97.0 0.0028 6.1E-08 50.7 6.6 60 157-224 51-110 (146)
149 KOG2193|consensus 96.9 0.00017 3.7E-09 66.3 -0.7 118 42-220 36-156 (584)
150 KOG2314|consensus 96.9 0.0026 5.6E-08 60.7 6.7 77 140-217 56-140 (698)
151 KOG0129|consensus 96.7 0.0059 1.3E-07 57.8 7.6 60 140-201 257-323 (520)
152 PF10309 DUF2414: Protein of u 96.6 0.011 2.4E-07 40.3 6.2 51 143-202 6-60 (62)
153 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0062 1.3E-07 40.3 4.7 52 143-201 2-53 (53)
154 KOG4849|consensus 96.4 0.0032 6.9E-08 56.8 3.8 79 140-219 78-160 (498)
155 KOG4676|consensus 96.1 0.00018 3.8E-09 65.6 -5.7 63 143-209 152-214 (479)
156 KOG2202|consensus 95.9 0.0051 1.1E-07 53.4 2.2 66 157-223 83-150 (260)
157 KOG4676|consensus 95.8 0.016 3.4E-07 53.3 5.2 76 142-218 7-86 (479)
158 KOG4661|consensus 95.8 0.018 3.9E-07 55.3 5.6 69 13-81 415-486 (940)
159 PF04059 RRM_2: RNA recognitio 95.7 0.022 4.7E-07 42.7 4.8 69 1-76 9-83 (97)
160 PF08675 RNA_bind: RNA binding 95.5 0.06 1.3E-06 38.9 6.2 55 140-203 7-61 (87)
161 KOG1855|consensus 95.5 0.014 3E-07 54.2 3.7 65 140-205 229-307 (484)
162 KOG4210|consensus 95.5 0.0037 8E-08 56.3 0.0 70 2-80 194-264 (285)
163 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.0089 1.9E-07 45.1 1.7 68 8-77 20-89 (100)
164 KOG1996|consensus 95.2 0.049 1.1E-06 48.3 6.1 73 144-217 283-363 (378)
165 KOG3152|consensus 95.1 0.03 6.4E-07 48.7 4.2 71 141-212 73-157 (278)
166 KOG4660|consensus 95.1 0.0089 1.9E-07 57.1 1.1 59 2-73 84-143 (549)
167 KOG1995|consensus 95.0 0.012 2.5E-07 53.5 1.6 80 1-81 74-155 (351)
168 KOG2314|consensus 94.7 0.057 1.2E-06 51.9 5.4 56 20-75 81-139 (698)
169 PF14605 Nup35_RRM_2: Nup53/35 94.5 0.014 3E-07 38.6 0.7 36 20-60 17-53 (53)
170 KOG2193|consensus 94.3 0.053 1.1E-06 50.4 4.2 73 144-222 3-77 (584)
171 KOG2202|consensus 93.9 0.018 3.9E-07 50.1 0.4 39 41-79 108-147 (260)
172 PF11608 Limkain-b1: Limkain b 93.7 0.14 3.1E-06 37.1 4.5 34 43-76 39-73 (90)
173 KOG4285|consensus 93.7 0.31 6.7E-06 43.5 7.5 80 141-227 196-276 (350)
174 KOG2135|consensus 93.6 0.041 8.9E-07 51.8 2.1 74 142-221 372-446 (526)
175 PF07292 NID: Nmi/IFP 35 domai 93.2 0.064 1.4E-06 39.3 2.2 31 46-76 1-33 (88)
176 PF11767 SET_assoc: Histone ly 92.2 0.63 1.4E-05 32.2 5.9 54 153-215 11-65 (66)
177 PF08777 RRM_3: RNA binding mo 92.2 0.38 8.2E-06 36.6 5.3 56 17-76 15-76 (105)
178 KOG2591|consensus 92.2 0.27 6E-06 47.3 5.4 69 140-215 173-246 (684)
179 KOG4849|consensus 91.3 0.16 3.5E-06 46.1 2.7 69 2-71 80-153 (498)
180 KOG4285|consensus 91.2 0.15 3.3E-06 45.5 2.4 44 42-85 231-275 (350)
181 PF10309 DUF2414: Protein of u 90.8 0.45 9.8E-06 32.5 3.9 39 18-62 19-61 (62)
182 KOG0112|consensus 90.5 0.098 2.1E-06 52.9 0.7 77 140-217 370-447 (975)
183 PF03468 XS: XS domain; Inter 89.3 0.64 1.4E-05 36.0 4.3 59 143-204 9-77 (116)
184 KOG2416|consensus 88.6 0.52 1.1E-05 45.8 4.0 79 140-224 442-525 (718)
185 PF04847 Calcipressin: Calcipr 87.6 1.5 3.2E-05 37.0 5.6 61 155-221 8-71 (184)
186 KOG2068|consensus 87.5 0.21 4.6E-06 45.2 0.6 78 141-219 76-161 (327)
187 PF08675 RNA_bind: RNA binding 87.4 1.7 3.6E-05 31.5 5.0 42 17-64 22-63 (87)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 86.2 0.83 1.8E-05 38.2 3.4 69 140-208 5-80 (176)
189 COG5175 MOT2 Transcriptional r 85.9 1.6 3.4E-05 39.8 5.2 56 21-76 138-199 (480)
190 PF15023 DUF4523: Protein of u 85.9 4.6 0.0001 32.4 7.2 71 140-217 84-158 (166)
191 PF08952 DUF1866: Domain of un 85.5 1.6 3.6E-05 35.1 4.6 53 17-76 50-103 (146)
192 PF07576 BRAP2: BRCA1-associat 84.3 12 0.00027 28.6 8.8 68 142-210 13-81 (110)
193 KOG2135|consensus 79.9 0.66 1.4E-05 44.0 0.4 60 6-79 386-445 (526)
194 PF03880 DbpA: DbpA RNA bindin 78.8 10 0.00023 26.5 6.3 60 151-218 10-74 (74)
195 KOG1996|consensus 76.8 2.6 5.5E-05 37.7 3.1 30 46-75 332-362 (378)
196 KOG4574|consensus 74.3 3.3 7.2E-05 42.2 3.5 81 141-227 297-380 (1007)
197 KOG0804|consensus 72.8 13 0.00028 35.4 6.8 70 140-210 72-142 (493)
198 PF03468 XS: XS domain; Inter 70.8 3.7 8E-05 31.8 2.4 49 16-65 30-79 (116)
199 KOG2253|consensus 66.7 4.4 9.6E-05 40.1 2.5 69 140-217 38-107 (668)
200 PF03880 DbpA: DbpA RNA bindin 64.4 6.3 0.00014 27.7 2.4 39 30-76 34-73 (74)
201 KOG2591|consensus 63.7 8.4 0.00018 37.6 3.7 50 17-72 189-244 (684)
202 KOG4410|consensus 63.4 12 0.00027 33.4 4.4 48 142-194 330-377 (396)
203 KOG4483|consensus 62.2 17 0.00037 34.0 5.3 58 140-203 389-446 (528)
204 KOG1855|consensus 61.9 3.4 7.3E-05 38.9 0.7 52 17-68 245-311 (484)
205 PF07576 BRAP2: BRCA1-associat 60.7 38 0.00083 25.9 6.2 57 11-68 21-80 (110)
206 KOG0151|consensus 60.4 11 0.00023 38.0 3.8 71 6-77 178-254 (877)
207 PF11767 SET_assoc: Histone ly 53.6 58 0.0013 22.4 5.6 45 17-68 14-59 (66)
208 cd06402 PB1_p62 The PB1 domain 49.8 40 0.00088 24.6 4.6 58 2-64 18-76 (87)
209 PF15513 DUF4651: Domain of un 49.2 29 0.00064 23.6 3.4 14 157-170 9-22 (62)
210 KOG0115|consensus 46.4 19 0.0004 31.8 2.7 59 5-64 34-93 (275)
211 PF15023 DUF4523: Protein of u 46.0 59 0.0013 26.2 5.2 53 18-76 105-158 (166)
212 PF02714 DUF221: Domain of unk 45.6 28 0.0006 31.7 4.0 30 46-76 1-30 (325)
213 PRK14548 50S ribosomal protein 45.4 39 0.00085 24.5 3.9 44 19-64 36-82 (84)
214 cd06404 PB1_aPKC PB1 domain is 42.9 1.3E+02 0.0028 21.8 6.3 55 17-76 26-82 (83)
215 PF03912 Psb28: Psb28 protein; 42.6 28 0.00061 26.5 2.8 32 22-54 2-36 (108)
216 TIGR03047 PS_II_psb28 photosys 40.2 50 0.0011 25.1 3.9 33 22-55 2-37 (109)
217 CHL00128 psbW photosystem II p 39.7 48 0.001 25.4 3.7 33 22-55 5-40 (113)
218 PHA00451 protein kinase 39.6 14 0.0003 33.1 0.9 32 11-42 174-208 (362)
219 PF04847 Calcipressin: Calcipr 38.0 52 0.0011 27.7 4.1 56 18-78 10-69 (184)
220 KOG0835|consensus 37.7 51 0.0011 30.3 4.2 12 152-163 211-222 (367)
221 KOG3424|consensus 37.1 68 0.0015 24.8 4.2 43 153-197 34-82 (132)
222 PF09707 Cas_Cas2CT1978: CRISP 36.4 71 0.0015 23.3 4.1 44 145-191 28-71 (86)
223 PLN00039 photosystem II reacti 36.1 46 0.001 25.4 3.1 33 22-55 4-39 (111)
224 KOG2068|consensus 35.9 17 0.00038 33.2 1.0 55 22-76 99-159 (327)
225 PRK13610 photosystem II reacti 35.9 47 0.001 25.4 3.1 35 21-56 10-47 (113)
226 KOG2318|consensus 35.7 1.1E+02 0.0024 30.3 6.4 75 140-215 172-300 (650)
227 PF14111 DUF4283: Domain of un 35.1 8 0.00017 30.9 -1.2 79 42-170 54-133 (153)
228 PRK13612 photosystem II reacti 34.8 48 0.001 25.4 3.0 34 21-55 6-42 (113)
229 PRK13611 photosystem II reacti 33.5 48 0.001 25.0 2.8 32 22-54 5-38 (104)
230 PF07292 NID: Nmi/IFP 35 domai 32.0 58 0.0013 23.9 3.0 31 187-217 1-33 (88)
231 KOG1554|consensus 29.8 22 0.00048 31.8 0.6 9 294-302 136-144 (347)
232 KOG4008|consensus 29.1 48 0.001 28.9 2.5 31 140-170 38-68 (261)
233 PF02714 DUF221: Domain of unk 28.9 67 0.0015 29.2 3.7 32 187-220 1-33 (325)
234 smart00596 PRE_C2HC PRE_C2HC d 27.3 87 0.0019 21.8 3.1 61 157-219 2-63 (69)
235 PRK11558 putative ssRNA endonu 25.9 1.3E+02 0.0027 22.5 4.0 46 145-193 30-75 (97)
236 KOG4019|consensus 25.2 95 0.002 26.0 3.5 75 144-224 12-93 (193)
237 cd06398 PB1_Joka2 The PB1 doma 25.0 2.8E+02 0.0061 20.3 5.7 61 150-217 25-86 (91)
238 TIGR03636 L23_arch archaeal ri 24.5 1.8E+02 0.004 20.6 4.5 55 145-201 16-71 (77)
239 cd06398 PB1_Joka2 The PB1 doma 22.6 3.2E+02 0.0069 20.0 6.7 55 17-76 31-86 (91)
240 PRK01178 rps24e 30S ribosomal 22.5 2.2E+02 0.0048 21.3 4.8 45 153-199 30-80 (99)
241 PTZ00071 40S ribosomal protein 21.0 2.5E+02 0.0054 22.3 4.9 44 153-198 35-85 (132)
242 KOG4213|consensus 20.7 86 0.0019 26.3 2.4 60 143-207 112-173 (205)
No 1
>KOG4211|consensus
Probab=99.96 E-value=1.4e-29 Score=231.26 Aligned_cols=171 Identities=39% Similarity=0.701 Sum_probs=144.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
.||+||++||+.||..|. +.++.+ ...+|+++|.|||+|+++||+++||+++...|+.|+|+|+.+...
T Consensus 18 LPwsat~~ei~~Ff~~~~----------I~~~~~-~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNCG----------IENLEI-PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CCccccHHHHHHHHhcCc----------eeEEEE-eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 499999999999888885 333333 345799999999999999999999999999999999999996554
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q psy10467 81 SSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVE 160 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~ 160 (304)
++ +|..++.++.. ......|.+++|||+||++||.
T Consensus 87 e~------------------------------------------d~~~~~~g~~s---~~~d~vVRLRGLPfscte~dI~ 121 (510)
T KOG4211|consen 87 EA------------------------------------------DWVMRPGGPNS---SANDGVVRLRGLPFSCTEEDIV 121 (510)
T ss_pred cc------------------------------------------cccccCCCCCC---CCCCceEEecCCCccCcHHHHH
Confidence 43 33333332222 1456789999999999999999
Q ss_pred HHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCccccCCC
Q psy10467 161 KFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLSPP 227 (304)
Q Consensus 161 ~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~~~~~~~ 227 (304)
+||+.+.+|.+.|.++.+..++++|.|||.|++.+.|++||..|...|+-|.|+|+.++..+++...
T Consensus 122 ~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 122 EFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred HHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhc
Confidence 9999999998778899999999999999999999999999999999999999999999887765544
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=5.8e-28 Score=221.77 Aligned_cols=155 Identities=16% Similarity=0.239 Sum_probs=127.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++||++|.++|..|+.|. +|+|+.|. +|+++|||||+|+++++|++||+.++ ..|.++.|.|..+.
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~---------~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPIN---------TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 356666666666666666555 59999886 69999999999999999999998755 89999999987732
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
+.. . .....+|||+|||.++|+++
T Consensus 186 p~~----------------------------------------~----------------~~~~~~lfV~nLp~~vtee~ 209 (346)
T TIGR01659 186 PGG----------------------------------------E----------------SIKDTNLYVTNLPRTITDDQ 209 (346)
T ss_pred ccc----------------------------------------c----------------ccccceeEEeCCCCcccHHH
Confidence 110 0 02235699999999999999
Q ss_pred HHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCC--eEEEEEEcCCc
Q psy10467 159 VEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH--RLVTLVMSGAQ 221 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V~~~~~~ 221 (304)
|+++|++||.|. .+.|+.+ .+|+++|||||+|++.++|++|| .+|+..|.+ +.|+|.++...
T Consensus 210 L~~~F~~fG~V~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 210 LDTIFGKYGQIV-QKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHhcCCEE-EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999998 5888888 59999999999999999999999 679998865 78999888764
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=3.4e-27 Score=218.91 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=128.0
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++||+||..+|+.+|.|. +|.|+.|+ +|+++|||||+|.++++|++||+.++ ..|+|+.|.|..+.
T Consensus 11 Lp~~~~e~~l~~~F~~~G~i~---------~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 11 LPQTMTQEEIRSLFTSIGEIE---------SCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCCCCCHHHHHHHHHccCCEE---------EEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467777777777777766666 49999887 69999999999999999999998655 89999999998732
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
+.. ......+|||+|||..+++++
T Consensus 82 ~~~--------------------------------------------------------~~~~~~~l~v~~l~~~~~~~~ 105 (352)
T TIGR01661 82 PSS--------------------------------------------------------DSIKGANLYVSGLPKTMTQHE 105 (352)
T ss_pred ccc--------------------------------------------------------cccccceEEECCccccCCHHH
Confidence 210 002345699999999999999
Q ss_pred HHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCC--eEEEEEEcCCc
Q psy10467 159 VEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH--RLVTLVMSGAQ 221 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V~~~~~~ 221 (304)
|+++|+.||.+. .+.++.+ .+|.++|||||+|++.++|+.|+ .+|+..+.| +.|.|..+...
T Consensus 106 l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 106 LESIFSPFGQII-TSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred HHHHHhccCCEE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 999999999997 5788777 57899999999999999999999 679998877 67888887654
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1.1e-26 Score=224.35 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=128.6
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
+|++++++|..+|..||.|. +|.|+.|+ +|+++|||||+|.++++|++||+.++ ..|+||.|.|.....
T Consensus 116 p~~~tEe~Lr~lF~~fG~I~---------sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 116 SFELREDTIRRAFDPFGPIK---------SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCCCCHHHHHHHHHccCCEE---------EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 55556666655555555544 59999886 79999999999999999999998655 999999999975221
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
.... . ...+.. ........+|||+|||.++++++|
T Consensus 187 ~p~a-----------------------------------~--~~~~~~--------~~~~~~~~rLfVgnLp~~vteedL 221 (612)
T TIGR01645 187 MPQA-----------------------------------Q--PIIDMV--------QEEAKKFNRIYVASVHPDLSETDI 221 (612)
T ss_pred cccc-----------------------------------c--cccccc--------cccccccceEEeecCCCCCCHHHH
Confidence 1000 0 000000 000134568999999999999999
Q ss_pred HHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 160 EKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
+++|+.||.|. .++|..+ .+|+++|||||+|++.++|.+|+ .+|+..|+|+.|+|..+..+
T Consensus 222 k~lFs~FG~I~-svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 222 KSVFEAFGEIV-KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhhcCCee-EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999998 6999988 57899999999999999999999 77999999999999888754
No 5
>KOG0117|consensus
Probab=99.94 E-value=5.3e-26 Score=205.31 Aligned_cols=207 Identities=15% Similarity=0.195 Sum_probs=150.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-C-cCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-S-NMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~-~i~~r~I~V~~s 77 (304)
+|-.++|+||..+|...|.|-+ ++|++|+ +|.++|||||+|.+.++|++|++.+| . .-.|+.|.|+.+
T Consensus 91 IPrD~~EdeLvplfEkiG~I~e---------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYE---------LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCccccchhhHHHHHhccceee---------EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 5778899999999988888876 9999996 79999999999999999999998866 4 446899999987
Q ss_pred CCCCcccc-CCC--------------CCCCCCCC-----CCCCCCCCccchhhhHHHHH----hh----------hcchh
Q psy10467 78 EGTSSKEA-NGR--------------GTGGFGGV-----KSTPYGVGIFCISQFLAKWM----RR----------AKRSE 123 (304)
Q Consensus 78 ~~~~~~~~-~~~--------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~----------~~~~~ 123 (304)
...+..-. +-| ...|.-.. .........+||.++.++.. .+ .....
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 76654311 111 11111110 01112235577776643211 11 11223
Q ss_pred hhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-H
Q psy10467 124 MDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-L 202 (304)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~ 202 (304)
++|......+.. +....-..|||+||+.++|++.|+++|+.||.|+ .|+.++| ||||+|.+.++|.+|| .
T Consensus 242 VdWAep~~e~de-d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ve-RVkk~rD-------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 242 VDWAEPEEEPDE-DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVE-RVKKPRD-------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeccCcccCCCh-hhhhheeeeeeeccchhhhHHHHHHHHHhccceE-Eeecccc-------eeEEeecchHHHHHHHHH
Confidence 455543333222 2446778899999999999999999999999998 6776655 9999999999999999 7
Q ss_pred hCCCccCCeEEEEEEcCCccccC
Q psy10467 203 RHKEKIGHRLVTLVMSGAQWFLS 225 (304)
Q Consensus 203 ~~~~~~~gr~i~V~~~~~~~~~~ 225 (304)
+|+.+|+|..|+|.+|++.+.+.
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred hcCceecCceEEEEecCChhhhc
Confidence 79999999999999999875443
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=2.5e-25 Score=206.39 Aligned_cols=203 Identities=17% Similarity=0.264 Sum_probs=127.5
Q ss_pred hhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCC--ceEEEEecCCCCccccCCCCC--
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGD--RYIELYMEEGTSSKEANGRGT-- 90 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~--r~I~V~~s~~~~~~~~~~~~~-- 90 (304)
.+|+++|+.++ +..+.++.+. +|.++|||||+|.+.++|++||+.++ ..+.+ ++|.|..+.............
T Consensus 104 ~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~ 183 (352)
T TIGR01661 104 HELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQL 183 (352)
T ss_pred HHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchh
Confidence 45556666664 3457887766 68999999999999999999998765 77766 478887765443211110000
Q ss_pred -----CCCCC---------CCCCCCCCCccch-------hhhHHHHHhhhcchhhhHHHhh--------------cCCCC
Q psy10467 91 -----GGFGG---------VKSTPYGVGIFCI-------SQFLAKWMRRAKRSEMDWALKR--------------QGAVL 135 (304)
Q Consensus 91 -----~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 135 (304)
..... ....+.......+ ............ ....+.... .+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (352)
T TIGR01661 184 EAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHA-VAQQHAAQRASPPATDGQTAGLAAGAQI 262 (352)
T ss_pred hcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcc-cccccccccCCCccccccccccccCCCC
Confidence 00000 0000000000000 000000000000 000000000 00001
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC-CCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEE
Q psy10467 136 SGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY-AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLV 213 (304)
Q Consensus 136 ~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~-~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i 213 (304)
......+.+|||+|||+++++++|+++|++||.|. .|+|+.|. +|.++|||||+|.+.++|.+|| .+||..|+||.|
T Consensus 263 ~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~-~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 263 AASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ-NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 11123456899999999999999999999999998 69999995 9999999999999999999999 689999999999
Q ss_pred EEEEcCCcc
Q psy10467 214 TLVMSGAQW 222 (304)
Q Consensus 214 ~V~~~~~~~ 222 (304)
+|.++..+.
T Consensus 342 ~V~~~~~~~ 350 (352)
T TIGR01661 342 QVSFKTNKA 350 (352)
T ss_pred EEEEccCCC
Confidence 999987653
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=1.3e-25 Score=215.49 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=130.1
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+|+++++++|..+|..+|.| .+|.|+.|+ +|+++|||||+|.+.++|++||.+++..+.|++|.|..+..
T Consensus 97 lp~~~~~~~l~~~F~~~G~v---------~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 97 LALKARERDLYEFFSKVGKV---------RDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCe---------eEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecch
Confidence 35666666666666665544 469999887 58999999999999999999999888999999999876322
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
...... . .. ...........+|||+|||+.+|+++|
T Consensus 168 ~~~~~~---------------------------------------~----~~-~~~~~~~p~~~~l~v~nl~~~~te~~l 203 (457)
T TIGR01622 168 EKNRAA---------------------------------------K----AA-THQPGDIPNFLKLYVGNLHFNITEQEL 203 (457)
T ss_pred hhhhhh---------------------------------------h----cc-cccCCCCCCCCEEEEcCCCCCCCHHHH
Confidence 110000 0 00 000000133678999999999999999
Q ss_pred HHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 160 EKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|.|+.|.|.++..
T Consensus 204 ~~~f~~~G~i~-~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 204 RQIFEPFGDIE-DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999999998 6888888 56799999999999999999999 6799999999999999763
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=2.6e-25 Score=218.53 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=124.9
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|+++||++|..+|+.+|.| .+|+|+.|.. ++++|||||+|.++++|++||..++ ..+.|+.|+|.++..
T Consensus 9 p~~vte~~L~~~F~~~G~v---------~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 9 DPDVTEAKLYDLFKPFGPV---------LSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 4555555555555555444 4699999884 8999999999999999999998877 779999999987432
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
.... . .....+|||+|||.++++++|
T Consensus 80 ~~~~---------------------------------------------~---------~~~~~~vfV~nLp~~~~~~~L 105 (562)
T TIGR01628 80 DPSL---------------------------------------------R---------RSGVGNIFVKNLDKSVDNKAL 105 (562)
T ss_pred cccc---------------------------------------------c---------ccCCCceEEcCCCccCCHHHH
Confidence 1100 0 022346999999999999999
Q ss_pred HHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 160 EKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
+++|+.||.|. .|.++.+.+|+++|||||+|++.++|.+|+ .+|+..+.|+.|.|...
T Consensus 106 ~~~F~~~G~i~-~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 106 FDTFSKFGNIL-SCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred HHHHHhcCCcc-eeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 99999999998 699999999999999999999999999999 67999999999998543
No 9
>KOG0145|consensus
Probab=99.93 E-value=2.1e-25 Score=188.94 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=129.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|=++|+++|++.|..-|+|+. +++++|+ +|.+.||+||.|-+++||++|+..+| -.|..++|+|..+.+
T Consensus 50 PQ~MTqdE~rSLF~SiGeiES---------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 50 PQNMTQDELRSLFGSIGEIES---------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred ccccCHHHHHHHhhcccceee---------eeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 557788888888888777774 9999999 79999999999999999999998877 889999999998543
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
.. . .-.+.-|||.|||.+.|..+|
T Consensus 121 Ss-------------------------------------~-------------------~Ik~aNLYvSGlPktMtqkel 144 (360)
T KOG0145|consen 121 SS-------------------------------------D-------------------SIKDANLYVSGLPKTMTQKEL 144 (360)
T ss_pred Ch-------------------------------------h-------------------hhcccceEEecCCccchHHHH
Confidence 21 0 022334999999999999999
Q ss_pred HHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCC--eEEEEEEcCCc
Q psy10467 160 EKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH--RLVTLVMSGAQ 221 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V~~~~~~ 221 (304)
+++|++||.|.. -+|+.| -+|.++|.|||.|+..++|+.|| .+||+.=.| -+|.|..+..+
T Consensus 145 E~iFs~fGrIIt-SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 145 EQIFSPFGRIIT-SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred HHHHHHhhhhhh-hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 999999998873 577777 68999999999999999999999 679987655 58999888765
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1.2e-24 Score=209.93 Aligned_cols=204 Identities=15% Similarity=0.163 Sum_probs=132.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcC-CCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNM-GDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i-~~r~I~V~~s~ 78 (304)
+|++++|++|..+|..+|.|. +|+|++|.+|+++|||||+|.++++|++||+.++ ..| .++.|.|..+.
T Consensus 66 Lp~~~tEd~L~~~F~~~G~I~---------~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 66 IPRDLYEDELVPLFEKAGPIY---------ELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCCCCHHHHHHHHHhhCCEE---------EEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 356666666666666666555 5999999999999999999999999999999876 555 57777776654
Q ss_pred CCCcc-ccCCCCC----------CCCC-CCC-----CC---CCCCCccchhhhHHHHHhhhc--------------chhh
Q psy10467 79 GTSSK-EANGRGT----------GGFG-GVK-----ST---PYGVGIFCISQFLAKWMRRAK--------------RSEM 124 (304)
Q Consensus 79 ~~~~~-~~~~~~~----------~~~~-~~~-----~~---~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 124 (304)
..... ..+-+.. ..+. +.. .. ......++|.+|.+....... ...+
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 32211 1111100 0000 000 00 011234555555422110000 0011
Q ss_pred hHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcC--CCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-
Q psy10467 125 DWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGL--EIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL- 201 (304)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~--g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~- 201 (304)
+|...... ..........+|||+|||+++|+++|+++|++| |.|. .|.++ ++||||+|++.++|++||
T Consensus 217 dwA~p~~~-~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~-rV~~~-------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 217 DWAEPEEE-VDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVE-RVKKI-------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred Eeeccccc-ccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceE-EEEee-------cCeEEEEeCCHHHHHHHHH
Confidence 11111111 111122446789999999999999999999999 9887 46654 469999999999999999
Q ss_pred HhCCCccCCeEEEEEEcCCcc
Q psy10467 202 LRHKEKIGHRLVTLVMSGAQW 222 (304)
Q Consensus 202 ~~~~~~~~gr~i~V~~~~~~~ 222 (304)
.+|+..|+|+.|+|.++.+..
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HhCCCEECCEEEEEEEccCCC
Confidence 689999999999999997653
No 11
>KOG0148|consensus
Probab=99.91 E-value=4e-24 Score=182.22 Aligned_cols=170 Identities=20% Similarity=0.265 Sum_probs=137.1
Q ss_pred cccccccccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCC
Q psy10467 5 FYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTS 81 (304)
Q Consensus 5 ~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~ 81 (304)
+.++||-..++. .+|++-|.+|+ +.+.++++|. +++++|||||-|-+.+||+.||..+| +.|++|.|+-..+..+.
T Consensus 65 vfvgdls~eI~~-e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 65 VFVGDLSPEIDN-EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred EEehhcchhcch-HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 445666666554 68999999997 5889999998 68999999999999999999998877 99999999988866554
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHH
Q psy10467 82 SKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEK 161 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~ 161 (304)
......+ ....+ . ...+....++|||+|++..+|+++|++
T Consensus 144 ~e~n~~~------------------------------ltfde---V-------~NQssp~NtsVY~G~I~~~lte~~mr~ 183 (321)
T KOG0148|consen 144 SEMNGKP------------------------------LTFDE---V-------YNQSSPDNTSVYVGNIASGLTEDLMRQ 183 (321)
T ss_pred cccCCCC------------------------------ccHHH---H-------hccCCCCCceEEeCCcCccccHHHHHH
Confidence 1110000 00111 1 112237789999999999999999999
Q ss_pred HhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 162 FLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 162 ~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
.|+.||+|. +|++..+ +|||||.|++.|.|..|| ++|+.+|+|..|++++-+..
T Consensus 184 ~Fs~fG~I~-EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 184 TFSPFGPIQ-EVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred hcccCCcce-EEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999998 6998854 689999999999999999 88999999999999987665
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=3.9e-24 Score=210.20 Aligned_cols=167 Identities=16% Similarity=0.244 Sum_probs=127.9
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCC----CceEEEEecCCCCccccCCCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMG----DRYIELYMEEGTSSKEANGRGT 90 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~----~r~I~V~~s~~~~~~~~~~~~~ 90 (304)
..+|+++|+.++ +..|.++.+.+|+++|||||+|++.++|.+|++.++ ..++ ++.|.|..+.......
T Consensus 192 ee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~------ 265 (562)
T TIGR01628 192 EDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAERE------ 265 (562)
T ss_pred HHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhH------
Confidence 345556666664 356899999999999999999999999999998755 8888 8888877643221100
Q ss_pred CCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCcc
Q psy10467 91 GGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVP 170 (304)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~ 170 (304)
.......... ...........+|||+||+.++|+++|+++|+.||.|.
T Consensus 266 -------------------------------~~~~~~~~~~-~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~ 313 (562)
T TIGR01628 266 -------------------------------AELRRKFEEL-QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEIT 313 (562)
T ss_pred -------------------------------HHHHhhHHhh-hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeE
Confidence 0000000000 00000114556799999999999999999999999998
Q ss_pred ceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCcc
Q psy10467 171 NGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQW 222 (304)
Q Consensus 171 ~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~ 222 (304)
.+.++.+.+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++..++
T Consensus 314 -~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 314 -SAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred -EEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 699999999999999999999999999999 679999999999999988754
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=6.6e-23 Score=199.24 Aligned_cols=188 Identities=11% Similarity=0.131 Sum_probs=128.6
Q ss_pred CCcccccccccccccchhhHHhhcCC--C-CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKP--I-VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~--~-~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s 77 (304)
+||++|+++|..||..+.....+... . .+.++.+ ++.+|||||+|.+.++|+.||++++..+.|+.|.|...
T Consensus 183 Lp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 183 IPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRP 257 (509)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCc
Confidence 57888888888888875333322111 1 1223333 45789999999999999999987778899999988753
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHH
Q psy10467 78 EGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKE 157 (304)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~ 157 (304)
..........+.. . .........................+|||+|||+.+|++
T Consensus 258 ~~~~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~ 310 (509)
T TIGR01642 258 HDYIPVPQITPEV-------S--------------------QKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGED 310 (509)
T ss_pred cccCCccccCCCC-------C--------------------CCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 3221000000000 0 000000000000000001112456789999999999999
Q ss_pred HHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 158 DVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 158 dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
+|+++|+.||.|. .+.++.+ .+|.++|||||+|.+.++|..|| .+|+..|+|+.|.|..+...
T Consensus 311 ~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 311 QIKELLESFGDLK-AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred HHHHHHHhcCCee-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999999998 6888888 68999999999999999999999 67999999999999988643
No 14
>KOG0127|consensus
Probab=99.90 E-value=2.6e-23 Score=191.84 Aligned_cols=184 Identities=22% Similarity=0.349 Sum_probs=136.1
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+||++|-++|.++|+..|-|. .+.++.++ .+.++|||||+|+-+||+++||+... +.++||.|.|..+.
T Consensus 13 lp~~~~~~qL~e~FS~vGPik---------~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 13 LPFSSTGEQLEEFFSYVGPIK---------HAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCCccchhHHHHhhhcccCcc---------eeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 367777777766666655444 47777776 46899999999999999999998866 89999999888765
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
.+.......+. .+..+.-......+.........++|.|+||||.|.+.|
T Consensus 84 ~R~r~e~~~~~------------------------------e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~d 133 (678)
T KOG0127|consen 84 KRARSEEVEKG------------------------------ENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPD 133 (678)
T ss_pred ccccchhcccc------------------------------cchhhhcccccCCcchhhccCccceEEeecCCcccCcHH
Confidence 54432211110 000000000000000111123478899999999999999
Q ss_pred HHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCcccc
Q psy10467 159 VEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWFL 224 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~~ 224 (304)
|+.+|+.||.|. .|.|+...+|+..|||||+|....+|..|| .+|+..|+||+|-|.+|-.++..
T Consensus 134 Lk~vFs~~G~V~-Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 134 LKNVFSNFGKVV-EIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred HHHHHhhcceEE-EEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 999999999998 599998888888899999999999999999 56999999999999999776443
No 15
>KOG0144|consensus
Probab=99.89 E-value=1.7e-23 Score=188.37 Aligned_cols=150 Identities=18% Similarity=0.287 Sum_probs=123.2
Q ss_pred hhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cC-CcCCCc--eEEEEecCCCCccccCCCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HK-SNMGDR--YIELYMEEGTSSKEANGRGT 90 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~-~~i~~r--~I~V~~s~~~~~~~~~~~~~ 90 (304)
+.||+++|+.|+ |.+|.|++|+ +|.++|||||.|.+.++|.+|+.. || +.|.|- +|.|..+..+.
T Consensus 48 E~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~--------- 118 (510)
T KOG0144|consen 48 EKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGER--------- 118 (510)
T ss_pred HHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhh---------
Confidence 356777777775 4679999998 689999999999999999999965 66 667655 77777632210
Q ss_pred CCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCcc
Q psy10467 91 GGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVP 170 (304)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~ 170 (304)
+. ....++|||+-|+..+||.||+++|+.||.|+
T Consensus 119 ----------------------------------er------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie 152 (510)
T KOG0144|consen 119 ----------------------------------ER------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIE 152 (510)
T ss_pred ----------------------------------hc------------cccchhhhhhhccccccHHHHHHHHHhhCccc
Confidence 00 13457799999999999999999999999999
Q ss_pred ceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCC-CccCC--eEEEEEEcCCcc
Q psy10467 171 NGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHK-EKIGH--RLVTLVMSGAQW 222 (304)
Q Consensus 171 ~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~-~~~~g--r~i~V~~~~~~~ 222 (304)
| +.|++|+.|.++|+|||.|.+.|-|..|| .+|+ ..|.| .+|-|.++..+.
T Consensus 153 d-~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 153 D-CYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred h-hhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 5 99999999999999999999999999999 6788 56766 489999987764
No 16
>KOG4211|consensus
Probab=99.89 E-value=1.8e-22 Score=184.78 Aligned_cols=213 Identities=32% Similarity=0.497 Sum_probs=147.4
Q ss_pred CCcccccccccccccchhhHHhhcCCC--CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPI--VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~--~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~ 78 (304)
.||+||++||. +||+++ +.+.|.|++++.|++.|.|||+|++.+.|++||.+++..|+.|+|+|++|+
T Consensus 111 LPfscte~dI~----------~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 111 LPFSCTEEDIV----------EFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCccCcHHHHH----------HHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 48999988766 666655 335688899999999999999999999999999999999999999999998
Q ss_pred CCCccccCCCCCCCCCCC--------------CCCC------------CCCCccchhhh---HHHHHhh--hcchhhhHH
Q psy10467 79 GTSSKEANGRGTGGFGGV--------------KSTP------------YGVGIFCISQF---LAKWMRR--AKRSEMDWA 127 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--------------~~~~------------~~~~~~~~~~~---~~~~~~~--~~~~~~~~~ 127 (304)
..+.+....+...-.+.. -..+ ...+...+++. .+..... ....+....
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 887766543322111100 0000 00011111110 0000000 000000000
Q ss_pred Hh----hc-CCCC-CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q psy10467 128 LK----RQ-GAVL-SGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201 (304)
Q Consensus 128 ~~----~~-~~~~-~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~ 201 (304)
.. +. .... ........+|+.++||+.+++.||.++|+...++. |+|....+|+.+|.|+|+|.+.+||..||
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~--v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYR--VHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCcee--EEEEeCCCCccCCcceeecccchhhHhhh
Confidence 00 00 0000 01113348899999999999999999999999886 99999999999999999999999999999
Q ss_pred HhCCCccCCeEEEEEEcCCccccC
Q psy10467 202 LRHKEKIGHRLVTLVMSGAQWFLS 225 (304)
Q Consensus 202 ~~~~~~~~gr~i~V~~~~~~~~~~ 225 (304)
.+++..++.|.|++++........
T Consensus 339 skd~anm~hrYVElFln~~~ga~g 362 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLNGAPGASG 362 (510)
T ss_pred ccCCcccCcceeeecccCCccccc
Confidence 999999999999999886665443
No 17
>KOG0127|consensus
Probab=99.89 E-value=1.3e-22 Score=187.24 Aligned_cols=211 Identities=14% Similarity=0.160 Sum_probs=143.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|||+|.+.||..+|+..|-+. +|.|+...+|+-.|||||+|....+|..||+..| ..|+||+|-|-++.+
T Consensus 125 LPf~~k~~dLk~vFs~~G~V~---------Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 125 LPFKCKKPDLKNVFSNFGKVV---------EIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred CCcccCcHHHHHHHhhcceEE---------EEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 799999999988888876665 4999988888877999999999999999999977 999999999999888
Q ss_pred CCccccCCCCC-----CCCCCCC----C---CCC---CCCccchhhhHHHHHhh-------hc---chhhhHH-------
Q psy10467 80 TSSKEANGRGT-----GGFGGVK----S---TPY---GVGIFCISQFLAKWMRR-------AK---RSEMDWA------- 127 (304)
Q Consensus 80 ~~~~~~~~~~~-----~~~~~~~----~---~~~---~~~~~~~~~~~~~~~~~-------~~---~~~~~~~------- 127 (304)
...+....... ....... . +.. ..+...........++. .. ..+++..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 87665422000 0000000 0 000 00000000000000000 00 0000000
Q ss_pred -HhhcCCC-CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHh-
Q psy10467 128 -LKRQGAV-LSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLR- 203 (304)
Q Consensus 128 -~~~~~~~-~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~- 203 (304)
.+..... ..+......+|||+||||++|+++|.++|++||.|. .+.|+.+ .||.++|.|||.|.+..+|..||..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~-ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVK-YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccce-eEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0000001 122235568999999999999999999999999998 6888887 7999999999999999999999954
Q ss_pred -----CC-CccCCeEEEEEEcCCc
Q psy10467 204 -----HK-EKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 204 -----~~-~~~~gr~i~V~~~~~~ 221 (304)
.+ ..|+||.|.|.++...
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred CccCCCceEEEeccEEeeeeccch
Confidence 23 6789999999988664
No 18
>KOG1365|consensus
Probab=99.88 E-value=4e-23 Score=183.45 Aligned_cols=193 Identities=27% Similarity=0.399 Sum_probs=141.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
.||+||+.|++.||...--| ..+.++|-++..++|+.+|-|||.|+.+++|+.||.++...||.|+|+++++...
T Consensus 169 LPfdat~~dVv~FF~~~cpv-----~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaa 243 (508)
T KOG1365|consen 169 LPFDATALDVVEFFGPPCPV-----TGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAA 243 (508)
T ss_pred CCCCcchHHHHHhcCCCCcc-----cCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Confidence 37888877777666521111 1246789999999999999999999999999999999999999999999998776
Q ss_pred CccccCCCCC-CCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 81 SSKEANGRGT-GGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
+......+.. .........+-..+ . .. ..........||.++||||++|.+||
T Consensus 244 Evqqvlnr~~s~pLi~~~~sp~~p~--------------~--------p~----~~~p~~~~kdcvRLRGLPy~AtvEdI 297 (508)
T KOG1365|consen 244 EVQQVLNREVSEPLIPGLTSPLLPG--------------G--------PA----RLVPPTRSKDCVRLRGLPYEATVEDI 297 (508)
T ss_pred HHHHHHHhhccccccCCCCCCCCCC--------------C--------cc----ccCCCCCCCCeeEecCCChhhhHHHH
Confidence 6543221111 11111100000000 0 00 00001144679999999999999999
Q ss_pred HHHhhcCCCcc--ceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh-CCCccCCeEEEEEEcCCcccc
Q psy10467 160 EKFLEGLEIVP--NGITIPHDYAGRCTGVAYIQFVDKENAEKALLR-HKEKIGHRLVTLVMSGAQWFL 224 (304)
Q Consensus 160 ~~~F~~~g~v~--~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~-~~~~~~gr~i~V~~~~~~~~~ 224 (304)
.+||.+|..-. .+|+++.+..|++.|.|||+|.+.|+|..|..+ +.+.+.+|+|+|+.++.+++.
T Consensus 298 L~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 298 LDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred HHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 99999986433 258999999999999999999999999999954 777778999999999998765
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.86 E-value=2.2e-20 Score=180.02 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPY-ECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~-~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||. .+|+++|+++|+.||.|. .|.++.+ .+|+|||+|.+.++|..|| .+|+..|.|+.|+|..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~-~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVE-RVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeE-EEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 699999999999999998 6888875 3689999999999999999 6899999999999998
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+....
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 76553
No 20
>KOG0145|consensus
Probab=99.85 E-value=1.3e-20 Score=159.98 Aligned_cols=211 Identities=17% Similarity=0.266 Sum_probs=137.1
Q ss_pred cccccccccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCc--eEEEEecCC
Q psy10467 5 FYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDR--YIELYMEEG 79 (304)
Q Consensus 5 ~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r--~I~V~~s~~ 79 (304)
+|+..|..-++. .+++++|++|+ +..-+|+.|. +|.++|.|||.|...++|+.||+.+| +.-.|. +|.|+-+..
T Consensus 130 LYvSGlPktMtq-kelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 130 LYVSGLPKTMTQ-KELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred eEEecCCccchH-HHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 344445444444 56778888775 3445566565 79999999999999999999999877 544444 788887665
Q ss_pred CCccccCCCC-------CCCC-CCCCCCCCCCCccchhhhHHHHH--hhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcC
Q psy10467 80 TSSKEANGRG-------TGGF-GGVKSTPYGVGIFCISQFLAKWM--RRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQG 149 (304)
Q Consensus 80 ~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n 149 (304)
........+. ...+ |.+..+ .-++.+........ .+...-..+....-.+...+.....++||||.|
T Consensus 209 Psq~t~~a~ls~ly~sp~rr~~Gp~hh~---~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 209 PSQKTNQALLSQLYQSPARRYGGPMHHQ---AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cccccchhhhHHhhcCccccCCCcccch---hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 5433211110 0000 101000 00111111000000 000000001011111122233446789999999
Q ss_pred CCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 150 LPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 150 Lp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
|..+++|.-|+++|.+||.|. .|++++| .+.+++|||||.+.+.++|..|| .+||..|++|.+.|.....
T Consensus 286 Lspd~de~~LWQlFgpFGAv~-nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVT-NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred cCCCchHhHHHHHhCccccee-eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 999999999999999999998 5999999 56999999999999999999999 8899999999999977543
No 21
>KOG0131|consensus
Probab=99.85 E-value=6.5e-21 Score=154.02 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=134.6
Q ss_pred ccccccccccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 4 SFYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 4 ~~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
+++...|.+..++ ..|.++|-+.+ +.+|+|.+|. +....|||||+|.++|||+.|++-+| ..|-||+|.|..++..
T Consensus 11 tiyvgnld~kvs~-~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 11 TLYVGNLDEKVSE-ELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred eEEEecCCHHHHH-HHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 3455566655554 46777777774 6999999988 57899999999999999999999988 8899999999985411
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q psy10467 81 SSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVE 160 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~ 160 (304)
. .+. ..+..+||+||.+.+++.-|.
T Consensus 90 ~--------------------------------------~nl-----------------~vganlfvgNLd~~vDe~~L~ 114 (203)
T KOG0131|consen 90 Q--------------------------------------KNL-----------------DVGANLFVGNLDPEVDEKLLY 114 (203)
T ss_pred c--------------------------------------ccc-----------------cccccccccccCcchhHHHHH
Confidence 0 000 223569999999999999999
Q ss_pred HHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCccc
Q psy10467 161 KFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 161 ~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~ 223 (304)
+.|+.||.+...-.++.+ .||.++|||||.|++.|.+.+|+ .+|++.++.|+|.|..+..+..
T Consensus 115 dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 115 DTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 999999988743477777 67999999999999999999999 6799999999999999876644
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.84 E-value=2.2e-20 Score=181.60 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=120.1
Q ss_pred hhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGF 93 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~ 93 (304)
..+|+++|+.|+ +..+.|+.+. +|+++|||||+|.+.++|+.||..++ ..|+|+.|.|..+............. +
T Consensus 309 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~-~- 386 (509)
T TIGR01642 309 EDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSN-G- 386 (509)
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccc-c-
Confidence 344445555453 3468888886 69999999999999999999998755 89999999998864322111000000 0
Q ss_pred CCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCC----------CCHHHHHHHh
Q psy10467 94 GGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYE----------CKKEDVEKFL 163 (304)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~----------~t~~dl~~~F 163 (304)
. .+. . ....... ............+|+|.||.+. ...++|+++|
T Consensus 387 --~--~~~-------~---------~~~~~~~------~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f 440 (509)
T TIGR01642 387 --M--APV-------T---------LLAKALS------QSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF 440 (509)
T ss_pred --c--ccc-------c---------cccccch------hhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH
Confidence 0 000 0 0000000 0000011245678999999642 1236899999
Q ss_pred hcCCCccceEEEeeC----CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCccc
Q psy10467 164 EGLEIVPNGITIPHD----YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 164 ~~~g~v~~~v~~~~~----~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~ 223 (304)
++||.|. .|.|+.+ .++...|+|||+|++.++|++|+ .|||..|+|+.|.|.+.....+
T Consensus 441 ~~~G~v~-~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~ 504 (509)
T TIGR01642 441 SKYGPLI-NIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCY 504 (509)
T ss_pred HhcCCee-EEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHh
Confidence 9999998 5888765 24567899999999999999999 7899999999999988776543
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.84 E-value=3.8e-20 Score=178.46 Aligned_cols=181 Identities=13% Similarity=0.170 Sum_probs=119.4
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGG 92 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~ 92 (304)
.++.+|+++|+.|| +..|.|+.+ .+|||||+|.+.++|+.||..++ ..|.|+.|.|..+.......... +
T Consensus 288 vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~----~ 359 (481)
T TIGR01649 288 VNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPRE----G 359 (481)
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCC----C
Confidence 45667777777775 467888875 36899999999999999997655 88999999998864432211100 0
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC--cc
Q psy10467 93 FGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEI--VP 170 (304)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~--v~ 170 (304)
... . +...|.++......+.... .............+|||+|||.++|+++|+++|+++|. +.
T Consensus 360 --~~~---~--~~~~~~d~~~~~~~r~~~~--------~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~ 424 (481)
T TIGR01649 360 --QLD---D--GLTSYKDYSSSRNHRFKKP--------GSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVK 424 (481)
T ss_pred --cCc---C--CCcccccccCCccccCCCc--------ccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccce
Confidence 000 0 0000000000000000000 00000001245678999999999999999999999997 54
Q ss_pred ceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeE------EEEEEcCC
Q psy10467 171 NGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRL------VTLVMSGA 220 (304)
Q Consensus 171 ~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~------i~V~~~~~ 220 (304)
.|++....++ .+|+|||+|++.++|.+|| .+|+..|.++. |+|..+.+
T Consensus 425 -~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 425 -KFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred -EEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 4666544444 5899999999999999999 67999999985 88888764
No 24
>KOG4205|consensus
Probab=99.83 E-value=3.7e-21 Score=172.30 Aligned_cols=166 Identities=17% Similarity=0.257 Sum_probs=134.3
Q ss_pred ccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCccccCCCC
Q psy10467 12 IHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRG 89 (304)
Q Consensus 12 ~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~~~~~~~~ 89 (304)
+|.++.+.|+++|.+++ +.++.++.|+ +|+++||+||+|++++.+.++|......|+++.|++.++.+++.....
T Consensus 15 sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~--- 91 (311)
T KOG4205|consen 15 SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKV--- 91 (311)
T ss_pred CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccc---
Confidence 34444555555555553 3458888887 699999999999999999999998889999999999997655421100
Q ss_pred CCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCc
Q psy10467 90 TGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIV 169 (304)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v 169 (304)
.......+|||++||.++++++++++|.+||.|
T Consensus 92 -----------------------------------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v 124 (311)
T KOG4205|consen 92 -----------------------------------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKV 124 (311)
T ss_pred -----------------------------------------------ccccceeEEEecCcCCCCchHHHhhhhhcccee
Confidence 000245679999999999999999999999988
Q ss_pred cceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCccccCCCC
Q psy10467 170 PNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLSPPL 228 (304)
Q Consensus 170 ~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~~~~~~~~ 228 (304)
.+ +.++.| .+.+++||+||.|.+++.+.+++.+..+.|+|+.++|..|.++++.....
T Consensus 125 ~~-~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~~ 183 (311)
T KOG4205|consen 125 AD-VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQSTK 183 (311)
T ss_pred Ee-eEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchhhccccc
Confidence 74 666666 78999999999999999999999999999999999999999987765543
No 25
>KOG0123|consensus
Probab=99.82 E-value=2.7e-19 Score=165.50 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=126.8
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGG 92 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~ 92 (304)
.+...|.++|++++ +..|+++.|. + +.|||||.|.+++||++||..+| ..+.|++|++.++...
T Consensus 10 v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd------------ 75 (369)
T KOG0123|consen 10 VTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD------------ 75 (369)
T ss_pred CChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC------------
Confidence 34566778888885 5889999999 7 99999999999999999999988 8999999999884221
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccce
Q psy10467 93 FGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG 172 (304)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~ 172 (304)
...|||.||+.+++..+|.++|+.||.|. +
T Consensus 76 -------------------------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~il-S 105 (369)
T KOG0123|consen 76 -------------------------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNIL-S 105 (369)
T ss_pred -------------------------------------------------CceeeecCCCcccCcHHHHHHHHhhcCee-E
Confidence 11199999999999999999999999999 7
Q ss_pred EEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCccccC
Q psy10467 173 ITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWFLS 225 (304)
Q Consensus 173 v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~~~ 225 (304)
+++..+.+| ++|| ||+|+++++|.+|+ .+||..+.|..|.|-....++.+.
T Consensus 106 ~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 106 CKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred EEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 999999999 9999 99999999999999 569999999999998877665443
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.81 E-value=6.2e-19 Score=169.25 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=120.5
Q ss_pred hhHHhhcCCCC-cceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCC-
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGF- 93 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~- 93 (304)
.+|+++|+.++ +..|.|+.++. |+++|||||+|.+.++|.+||+.++ ..|+|+.|.|..+................
T Consensus 201 ~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~ 280 (457)
T TIGR01622 201 QELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDID 280 (457)
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhcccc
Confidence 34445555554 35699988875 6999999999999999999998755 88999999999866432221110000000
Q ss_pred ----CCCCC-CC-----------CC-CCccchhhh------HHHHH-----hhhcc--hhhhHHHhhcCC-CC--CCCCC
Q psy10467 94 ----GGVKS-TP-----------YG-VGIFCISQF------LAKWM-----RRAKR--SEMDWALKRQGA-VL--SGSAV 140 (304)
Q Consensus 94 ----~~~~~-~~-----------~~-~~~~~~~~~------~~~~~-----~~~~~--~~~~~~~~~~~~-~~--~~~~~ 140 (304)
.+... .+ .+ .+...+... +.... ..... ...........+ .. .....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (457)
T TIGR01622 281 KQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNL 360 (457)
T ss_pred ccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCC
Confidence 00000 00 00 000000000 00000 00000 000000000000 00 00125
Q ss_pred CCcEEEEcCCCCCCC----------HHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC
Q psy10467 141 DQCCMRLQGLPYECK----------KEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG 209 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t----------~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~ 209 (304)
...+|+|.||....+ .+||++.|++||.|. .|.+. +..+.|++||+|.+.++|.+|+ .+||..++
T Consensus 361 ~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~-~v~v~---~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~ 436 (457)
T TIGR01622 361 ATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV-HIYVD---TKNSAGKIYLKFSSVDAALAAFQALNGRYFG 436 (457)
T ss_pred CCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee-EEEEe---CCCCceeEEEEECCHHHHHHHHHHhcCcccC
Confidence 678999999965544 368999999999997 46664 2356799999999999999999 78999999
Q ss_pred CeEEEEEEcCCccc
Q psy10467 210 HRLVTLVMSGAQWF 223 (304)
Q Consensus 210 gr~i~V~~~~~~~~ 223 (304)
||.|.|.......+
T Consensus 437 gr~i~~~~~~~~~~ 450 (457)
T TIGR01622 437 GKMITAAFVVNDVY 450 (457)
T ss_pred CeEEEEEEEcHHHH
Confidence 99999988876643
No 27
>KOG0147|consensus
Probab=99.80 E-value=9.7e-20 Score=169.02 Aligned_cols=164 Identities=20% Similarity=0.275 Sum_probs=130.1
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCccccCCCCCCC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGG 92 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~~~~~~~~~~~ 92 (304)
....+|++||+.++ +.+|.|+.|. .++++|.|||+|.+.+.+..||...++.+.|-+|.|..+.......++.
T Consensus 191 ~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~----- 265 (549)
T KOG0147|consen 191 NPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANA----- 265 (549)
T ss_pred CCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhc-----
Confidence 34678899999875 6889999998 4899999999999999999999999999999999987732211100000
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccce
Q psy10467 93 FGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG 172 (304)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~ 172 (304)
. .+. .. .....+...|||+||+++.|+.+|+.+|++||.|+ .
T Consensus 266 -----------------------------s--~a~----~~--k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie-~ 307 (549)
T KOG0147|consen 266 -----------------------------S--PAL----QG--KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIE-N 307 (549)
T ss_pred -----------------------------c--ccc----cc--cccccchhhhhhcccccCchHHHHhhhccCcccce-e
Confidence 0 000 00 00012333399999999999999999999999998 5
Q ss_pred EEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 173 ITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 173 v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
|.+.+| .||.++|||||+|.+.++|.+|+ .+||.+|.||.|+|......
T Consensus 308 v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 308 VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 899888 49999999999999999999998 77999999999999766544
No 28
>KOG0124|consensus
Probab=99.79 E-value=7.6e-19 Score=155.54 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=132.1
Q ss_pred ccccchhhHHhhcCCCCc-ceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCC
Q psy10467 12 IHITYCLLCSQFFKPIVP-VNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGR 88 (304)
Q Consensus 12 ~~~~~~~~I~~fF~~~~~-~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~ 88 (304)
.|.-.+..|+..|.+|++ +.|.|.-|+ +|+++|||||+|+-+|.|+.|++.+| ..||||.|+|-+.+.-..
T Consensus 122 sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQ------ 195 (544)
T KOG0124|consen 122 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ------ 195 (544)
T ss_pred EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcc------
Confidence 345567789999999974 899999888 79999999999999999999999877 899999999975211100
Q ss_pred CCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC
Q psy10467 89 GTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEI 168 (304)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~ 168 (304)
.++. -++ .... ...-.+|||..++.+.+++||+..|+.||.
T Consensus 196 -------------------AQpi----------ID~--vqee--------Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~ 236 (544)
T KOG0124|consen 196 -------------------AQPI----------IDM--VQEE--------AKKFNRIYVASVHPDLSETDIKSVFEAFGE 236 (544)
T ss_pred -------------------cchH----------HHH--HHHH--------HHhhheEEeeecCCCccHHHHHHHHHhhcc
Confidence 0000 111 0000 134567999999999999999999999999
Q ss_pred ccceEEEeeCCC-CCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 169 VPNGITIPHDYA-GRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 169 v~~~v~~~~~~~-g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
|. .+.+..+.+ +.++||||++|.+..+...|+ .+|-..|+|.+++|-.+..+
T Consensus 237 I~-~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 237 IV-KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred ee-eEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 98 689988854 579999999999999999999 78999999999999777543
No 29
>KOG1365|consensus
Probab=99.78 E-value=2e-19 Score=160.06 Aligned_cols=223 Identities=26% Similarity=0.316 Sum_probs=155.3
Q ss_pred cccccchhhHHhhcCCCCc--ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCccccCCC
Q psy10467 11 LIHITYCLLCSQFFKPIVP--VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88 (304)
Q Consensus 11 ~~~~~~~~~I~~fF~~~~~--~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~~~~~~~ 88 (304)
+.|-.+-.+|..||+++.+ ..+.|.....|+..|+|.|.|-++|.-+.||+.+...+++|+|+|..+...+...-+.-
T Consensus 68 lpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg 147 (508)
T KOG1365|consen 68 LPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGG 147 (508)
T ss_pred CCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCC
Confidence 4567777888899998743 55667777789999999999999999999999999999999999999766553221100
Q ss_pred CCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC
Q psy10467 89 GTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEI 168 (304)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~ 168 (304)
........ .+....-.|.++||||++|+.|+.+||.+-.+
T Consensus 148 ------------------------------~s~e~~~f----------lsk~~qvivRmRGLPfdat~~dVv~FF~~~cp 187 (508)
T KOG1365|consen 148 ------------------------------TSNEAAPF----------LSKENQVIVRMRGLPFDATALDVVEFFGPPCP 187 (508)
T ss_pred ------------------------------ccccCCCC----------CCcccceEEEecCCCCCcchHHHHHhcCCCCc
Confidence 00000000 00133456888999999999999999974322
Q ss_pred c---cceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCccccCCCCCCCCCCCCccCCCCCCC
Q psy10467 169 V---PNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLSPPLTNETPISRLDLTGSPVR 245 (304)
Q Consensus 169 v---~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (304)
| .++|.++...+|+++|.|||.|..+++|..||.+|...|+-|+|+|+.+...++.....+.... +-.....+|.-
T Consensus 188 v~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~-pLi~~~~sp~~ 266 (508)
T KOG1365|consen 188 VTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSE-PLIPGLTSPLL 266 (508)
T ss_pred ccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccc-cccCCCCCCCC
Confidence 2 1258888888999999999999999999999999999999999999999887665332221100 00000011100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccc
Q psy10467 246 STICVLCHPLTPRSVRPRSVRQSEHEWWALARLGSFLISRT 286 (304)
Q Consensus 246 ~~~~~~~~~~sp~~~~~rs~s~~~~~~~~~v~nl~~~~s~~ 286 (304)
.. ...+-..+.+..-|+.+|+|||.++.-
T Consensus 267 p~------------~p~~~~p~~~~kdcvRLRGLPy~AtvE 295 (508)
T KOG1365|consen 267 PG------------GPARLVPPTRSKDCVRLRGLPYEATVE 295 (508)
T ss_pred CC------------CccccCCCCCCCCeeEecCCChhhhHH
Confidence 00 011122334446899999999998743
No 30
>KOG0110|consensus
Probab=99.74 E-value=7.3e-18 Score=160.53 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=131.6
Q ss_pred ccccccchhhHHhhcCCCC-cceEEEeeCCCCC----ceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCcc
Q psy10467 10 ILIHITYCLLCSQFFKPIV-PVNILLLTDDAGR----SSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSK 83 (304)
Q Consensus 10 l~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr----~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~ 83 (304)
-++|-++.+++++.|...+ +..|.|.+.+++. +.|||||+|.++++|+.|++.++ +.|+|..|+|..+.....
T Consensus 522 Nlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~- 600 (725)
T KOG0110|consen 522 NLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA- 600 (725)
T ss_pred cCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc-
Confidence 3567777777888888764 5677777666553 66999999999999999999988 999999999988651110
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHh
Q psy10467 84 EANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFL 163 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F 163 (304)
.... .. .........|.|+||||.++..+|+.+|
T Consensus 601 ------------------------------------~~~g---------K~-~~~kk~~tKIlVRNipFeAt~rEVr~LF 634 (725)
T KOG0110|consen 601 ------------------------------------STVG---------KK-KSKKKKGTKILVRNIPFEATKREVRKLF 634 (725)
T ss_pred ------------------------------------cccc---------cc-cccccccceeeeeccchHHHHHHHHHHH
Confidence 0000 00 0001335679999999999999999999
Q ss_pred hcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCccc
Q psy10467 164 EGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 164 ~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~ 223 (304)
..||.+. .|+|+.. ..+.++|||||+|-++.+|..|+ .+..+.|.||.+-+.++.....
T Consensus 635 ~aFGqlk-svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 635 TAFGQLK-SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hccccee-eeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 9999998 6999887 66778999999999999999999 7788999999999999876643
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=1.3e-16 Score=129.20 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|. .+.|+.| .+++++|||||+|++.++|++|| .+|+..|+|+.|+|.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999998 5888888 68999999999999999999999 5799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8754
No 32
>KOG0107|consensus
Probab=99.65 E-value=2.9e-15 Score=120.69 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+||+..+++.||+..|..||++. .|+|.. .+.|||||||+++.||+.|+ .|||..|+|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lr-svWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLR-SVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcce-eEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3467899999999999999999999999998 588876 47789999999999999999 78999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
...-
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 7653
No 33
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=8.2e-16 Score=141.57 Aligned_cols=79 Identities=11% Similarity=0.224 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+++|+++|+++|+.||.|. .|+|+.| .+++++|||||+|.++++|++|| .+|+..|.++.|+|.+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~-~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPIN-TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 5678999999999999999999999999998 6999888 68999999999999999999999 6799999999999987
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
+.
T Consensus 184 a~ 185 (346)
T TIGR01659 184 AR 185 (346)
T ss_pred cc
Confidence 54
No 34
>KOG4207|consensus
Probab=99.65 E-value=1.6e-15 Score=125.08 Aligned_cols=81 Identities=25% Similarity=0.452 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
.....|.|-||.+-+|.++|..+|++||.|-| |.|..| .|+.++|||||-|....||+.|+ .+||.+|+|+.|.|..
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgD-VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGD-VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccc-eecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45567999999999999999999999999985 999999 79999999999999999999999 7899999999999988
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
|.-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8654
No 35
>KOG0123|consensus
Probab=99.65 E-value=4.4e-16 Score=144.18 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=127.0
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGFG 94 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~ 94 (304)
...|.++|..++ +..+.++.+..|+++||+||.|+++++|..|+..++ ...++..+-|.++.......
T Consensus 181 ~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~---------- 250 (369)
T KOG0123|consen 181 DEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSERE---------- 250 (369)
T ss_pred hHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhH----------
Confidence 446777777775 467999999999999999999999999999999877 66666666666633210000
Q ss_pred CCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEE
Q psy10467 95 GVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGIT 174 (304)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~ 174 (304)
........ ...... ........|||.||+..++.+.|.+.|+.+|.|. .++
T Consensus 251 ------------------------~~l~~~~~-~~~~~~---~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~-s~k 301 (369)
T KOG0123|consen 251 ------------------------AELKRKFE-QEFAKR---SVSLQGANLYVKNLDETLSDEKLRKIFSSFGEIT-SAK 301 (369)
T ss_pred ------------------------HHHhhhhH-hhhhhc---cccccccccccccCccccchhHHHHHHhccccee-eEE
Confidence 00000000 000000 0014455699999999999999999999999998 699
Q ss_pred EeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCccc
Q psy10467 175 IPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 175 ~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~ 223 (304)
|..+..|+++|||||.|.+.++|..|+ .+|+..++++.|.|.++...+.
T Consensus 302 v~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 302 VMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred EEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhcc
Confidence 999999999999999999999999999 6799999999999988775433
No 36
>KOG0109|consensus
Probab=99.64 E-value=8.2e-16 Score=132.85 Aligned_cols=147 Identities=13% Similarity=0.170 Sum_probs=121.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
||+.+...+|.. -.+..+|+.+|++|+ +.+++|+++ ||||-.+++..|+.||.. ++-.|.|..|.|..+.
T Consensus 1 ~~~KLFIGNLp~-~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 1 MPVKLFIGNLPR-EATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred CccchhccCCCc-ccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 556666666543 345577888899885 678999853 999999999999999985 5588999999988743
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
.+. ....+|+|+||.+.||.++
T Consensus 73 sKs----------------------------------------------------------k~stkl~vgNis~tctn~E 94 (346)
T KOG0109|consen 73 SKS----------------------------------------------------------KASTKLHVGNISPTCTNQE 94 (346)
T ss_pred ccC----------------------------------------------------------CCccccccCCCCccccCHH
Confidence 221 3456699999999999999
Q ss_pred HHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 159 VEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
|+..|++||+|. ++.|++| |+||.|+-.++|..|+ .+|+.+++|+++.|.++...
T Consensus 95 lRa~fe~ygpvi-ecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 95 LRAKFEKYGPVI-ECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred HhhhhcccCCce-eeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 999999999998 5888864 9999999999999999 78999999999999888654
No 37
>KOG4212|consensus
Probab=99.62 E-value=8.1e-15 Score=132.84 Aligned_cols=208 Identities=17% Similarity=0.215 Sum_probs=137.1
Q ss_pred CCcccccccccccccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
|||.+-|+||+..+.+. .+ +.-|.|+.|.+|+++|||.|+|+++|.+++|+++++ ..+.||+|.|+...
T Consensus 52 Ipyd~rWqdLKdLvrek---------vGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 52 IPYDYRWQDLKDLVREK---------VGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred CcchhhhHhHHHHHHHh---------cCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 68999999988777652 22 456899999999999999999999999999999988 78999999998865
Q ss_pred CCCccc--cCCCCCC-CCCC------CCCCCCC--------------------CCccchhhhHHHHHhhhcchh--hhHH
Q psy10467 79 GTSSKE--ANGRGTG-GFGG------VKSTPYG--------------------VGIFCISQFLAKWMRRAKRSE--MDWA 127 (304)
Q Consensus 79 ~~~~~~--~~~~~~~-~~~~------~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~ 127 (304)
+.+... ...+..+ ++.+ .+....+ +++..+..+.+.+.+.....- ....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 533211 1111000 0000 0000000 000001111011000000000 0000
Q ss_pred HhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCC
Q psy10467 128 LKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKE 206 (304)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~ 206 (304)
..++... -..+....+||.||.+.+....|++.|.-.|.+. .|.+-.|..|.++|||.++|.++-+|.+||. +++.
T Consensus 203 Flr~~h~--f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~-~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 203 FLRSLHI--FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQ-SVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhccC--CCCCccceeeeeccccccchHHHHHHhccceeee-eeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 0110001 1235567799999999999999999999999987 7999899999999999999999999999995 4888
Q ss_pred ccCCeEEEEEEcCC
Q psy10467 207 KIGHRLVTLVMSGA 220 (304)
Q Consensus 207 ~~~gr~i~V~~~~~ 220 (304)
-+..++..+.....
T Consensus 280 g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRI 293 (608)
T ss_pred CCccccceeecccc
Confidence 88888887766433
No 38
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=2.2e-15 Score=106.28 Aligned_cols=69 Identities=26% Similarity=0.505 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 145 v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
|||+|||.++|+++|+++|++||.+. .+.+..+.++..+|+|||+|.+.++|++|+ .+|+..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIE-SIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEE-EEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcc-cccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999997 688888788999999999999999999999 5899999999885
No 39
>KOG0146|consensus
Probab=99.60 E-value=1.4e-14 Score=123.99 Aligned_cols=84 Identities=12% Similarity=0.194 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..++.|||..||.+..+.+|.++|-.||.|. +.++..| .|+.++-||||.|+++.+|+.|| .+||..|+-+.|+|.+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhiv-SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIV-SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhcccccee-eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 6789999999999999999999999999888 5777777 79999999999999999999999 7899999999999988
Q ss_pred cCCcccc
Q psy10467 218 SGAQWFL 224 (304)
Q Consensus 218 ~~~~~~~ 224 (304)
..+++..
T Consensus 362 KRPkdan 368 (371)
T KOG0146|consen 362 KRPKDAN 368 (371)
T ss_pred cCccccC
Confidence 7776543
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=1.5e-14 Score=102.39 Aligned_cols=69 Identities=23% Similarity=0.454 Sum_probs=62.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh-CCCccCCeEEE
Q psy10467 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR-HKEKIGHRLVT 214 (304)
Q Consensus 145 v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~-~~~~~~gr~i~ 214 (304)
|+|+|||++++++||.++|+.+|.|. .+.+..+.+|.++|+|||+|.+.++|.+|+.. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~-~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVE-KVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEE-EEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcc-eEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999987 69999987799999999999999999999965 77999999885
No 41
>KOG0125|consensus
Probab=99.56 E-value=1e-14 Score=127.98 Aligned_cols=82 Identities=15% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|+|.|+||.-.+.||+.+|++||.|. .|.|+.++.| +||||||+|++.+||++|- ++||..+.||.|+|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vl-dVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVL-DVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCcee-eEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 5668999999999999999999999999999 4999999888 8999999999999999999 77999999999999988
Q ss_pred CCccc
Q psy10467 219 GAQWF 223 (304)
Q Consensus 219 ~~~~~ 223 (304)
....+
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 77633
No 42
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.7e-14 Score=140.11 Aligned_cols=76 Identities=17% Similarity=0.386 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
...++|||+|||+++++++|+++|+.||.|. .|.|+.| .+|+++|||||+|.+.++|..|+ .+|+..|+||.|+|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~-sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEE-EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 5568999999999999999999999999998 6999888 78999999999999999999999 679999999999996
No 43
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.7e-14 Score=124.11 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
.++|||+|||+.+|+++|++||+.||.|. .|.|+.+. ..+|||||+|.++++|+.||.+|+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~-~V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIE-YVEMQSEN--ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecC--CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999998 69988764 357999999999999999999999999999999998754
No 44
>KOG0105|consensus
Probab=99.53 E-value=1.2e-12 Score=106.46 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=110.8
Q ss_pred ccccccccccccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCC
Q psy10467 4 SFYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTS 81 (304)
Q Consensus 4 ~~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~ 81 (304)
.+|+.+|...+.+ .+|+++|..|+ +.+|.|. .+.| ..+||||+|+++.||+.||.-.+ -.++|..+.|.....-.
T Consensus 8 ~iyvGNLP~diRe-keieDlFyKyg~i~~ieLK-~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 8 RIYVGNLPGDIRE-KEIEDLFYKYGRIREIELK-NRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred eEEecCCCcchhh-ccHHHHHhhhcceEEEEec-cCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 4677777777665 68999999996 5778775 3333 56899999999999999997744 77888888876532211
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHH
Q psy10467 82 SKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEK 161 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~ 161 (304)
..... .+.+++......+.+ . ..-..+..+..+|.|.+||.+.+|+||++
T Consensus 85 --~s~~~-~G~y~gggrgGgg~g--------------g-------------~rgppsrrSe~RVvVsGLp~SgSWQDLKD 134 (241)
T KOG0105|consen 85 --SSSDR-RGSYSGGGRGGGGGG--------------G-------------RRGPPSRRSEYRVVVSGLPPSGSWQDLKD 134 (241)
T ss_pred --ccccc-ccccCCCCCCCCCCC--------------c-------------ccCCcccccceeEEEecCCCCCchHHHHH
Confidence 00000 000100000000000 0 00011125678899999999999999999
Q ss_pred HhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC
Q psy10467 162 FLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG 209 (304)
Q Consensus 162 ~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~ 209 (304)
++.+.|.|. -..+.+| |.+.|+|...||.+-|+ +++.+.+.
T Consensus 135 HmReaGdvC-fadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 135 HMREAGDVC-FADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred HHHhhCCee-eeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 999999886 2344433 47999999999999999 66665553
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=6.8e-14 Score=135.65 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC-CeEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG-HRLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~-gr~i~V 215 (304)
...++|||+|||.++++++|+++|+++|.|. .++|++|.+|+++|||||+|.+.++|++|| .+|+..|. |+.|.|
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~-~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIY-ELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEE-EEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 4457899999999999999999999999998 599999999999999999999999999999 56887774 666554
No 46
>KOG0144|consensus
Probab=99.52 E-value=6.3e-14 Score=127.00 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..+.-+|+.+||.+--+.||...|..||.|. +.++..| .||-++-|+||.|++..+|..|| .+||..|+++.++|.+
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vl-sakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVL-SAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhcccccee-EEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 5567799999999999999999999999998 5777666 89999999999999999999999 7799999999999987
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
...
T Consensus 501 k~~ 503 (510)
T KOG0144|consen 501 KRD 503 (510)
T ss_pred eec
Confidence 554
No 47
>KOG0149|consensus
Probab=99.51 E-value=2.4e-14 Score=120.70 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
..-.+|||+||++.++.++|+++|++||.|.+ +.++.| .+|+++|||||+|.+.+.|.+|++--.-.|+||...+.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~e-avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVE-AVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEE-EEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 44568999999999999999999999999985 555555 8999999999999999999999988888999999999887
Q ss_pred CC
Q psy10467 219 GA 220 (304)
Q Consensus 219 ~~ 220 (304)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 48
>KOG0148|consensus
Probab=99.51 E-value=4.6e-14 Score=120.96 Aligned_cols=79 Identities=19% Similarity=0.321 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
..-|||+.|...++-++|++.|.+||.|. ..++++| .|++++|||||.|-+.+||+.|| .|||+.|++|.|+--++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS-~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVS-DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccc-cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 56699999999999999999999999998 4899999 89999999999999999999999 789999999999988877
Q ss_pred Cc
Q psy10467 220 AQ 221 (304)
Q Consensus 220 ~~ 221 (304)
++
T Consensus 141 RK 142 (321)
T KOG0148|consen 141 RK 142 (321)
T ss_pred cC
Confidence 65
No 49
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=9.9e-14 Score=118.76 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
..+++|||+||++.+|++||++||+.+|.|. .|.|+.| +...|+|||+|.++++|+.|+.+||..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~-~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIE-HVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeE-EEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4568999999999999999999999999998 5998876 556789999999999999999999999999999998865
Q ss_pred C
Q psy10467 220 A 220 (304)
Q Consensus 220 ~ 220 (304)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 50
>KOG0122|consensus
Probab=99.49 E-value=1.2e-13 Score=116.95 Aligned_cols=81 Identities=16% Similarity=0.344 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|.|.||+.++++.||+++|..||.|. .|.|.+| .||.++|||||.|.+.+||.+|| .+||+=++.-.|+|++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~-rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPIT-RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccc-eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 4667899999999999999999999999998 7999999 79999999999999999999999 6799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 8864
No 51
>KOG0121|consensus
Probab=99.49 E-value=7e-14 Score=107.14 Aligned_cols=80 Identities=14% Similarity=0.324 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
..+++|||+||++.+||++|.++|+.+|.|. .|.|-.| -+-.+.|||||+|-+.++|+.||. ++++.|+.++|+|.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~ir-riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIR-RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchh-eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 5678999999999999999999999999998 5777677 466789999999999999999995 599999999999987
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
.-.
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 543
No 52
>KOG4307|consensus
Probab=99.46 E-value=1.3e-13 Score=131.09 Aligned_cols=191 Identities=16% Similarity=0.080 Sum_probs=135.4
Q ss_pred cchhhHHhhcCCCCcceEEEeeCCCCCc-eeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCccccCCCCCCCC
Q psy10467 15 TYCLLCSQFFKPIVPVNILLLTDDAGRS-SGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGGF 93 (304)
Q Consensus 15 ~~~~~I~~fF~~~~~~~i~i~~d~~Gr~-~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~~~~~~~~~~~~ 93 (304)
+.+-|+++||.+..+..+.|..+.-+.+ +|-++|+|....++++|++.++..+-.|+|++.......+..+-... .+.
T Consensus 323 ~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~-~~~ 401 (944)
T KOG4307|consen 323 NDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQ-AGV 401 (944)
T ss_pred cccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCcccc-ccC
Confidence 4455677788888777777877775555 89999999999999999999888888999999886665543221111 000
Q ss_pred C-CCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccce
Q psy10467 94 G-GVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG 172 (304)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~ 172 (304)
+ ......++ ............+...........+|||.+||+.+++.++.++|.....|++.
T Consensus 402 ~~~~~~~~hg-----------------~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 402 PPPVIQNNHG-----------------RPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCcccccCC-----------------CCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 0 00000000 00000000011111222223667899999999999999999999999999877
Q ss_pred EEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEcCCccc
Q psy10467 173 ITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 173 v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~~~~~~ 223 (304)
|.|....+++-++.|||+|..++++.+|+. .+.+.++.|.|+|.......|
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 888888999999999999999888888885 488999999999977765544
No 53
>KOG0105|consensus
Probab=99.45 E-value=7.6e-13 Score=107.65 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||.++.+.||+++|-+||.|. .|.+-. .. .+..||||+|+++.||+.|| ..|+..++|..|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~-~ieLK~-r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIR-EIELKN-RP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceE-EEEecc-CC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 5568899999999999999999999999987 355432 23 35579999999999999999 66999999999999986
Q ss_pred CC
Q psy10467 219 GA 220 (304)
Q Consensus 219 ~~ 220 (304)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 54
No 54
>KOG0110|consensus
Probab=99.45 E-value=3.5e-13 Score=128.94 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=66.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCC----cccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR----CTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 145 v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~----~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
|||.||+|++|.++|..+|...|.|. .+.|....++. +.|||||+|.+.++|+.|+ .++|+.|+|+.|.|..+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~Vl-S~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVL-SIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEE-EEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999999999999999998 57777665543 5599999999999999999 669999999999998876
No 55
>KOG0130|consensus
Probab=99.44 E-value=3e-13 Score=104.59 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..++.|||.|+...+|++||.+.|..||.|.+ |.+-.| .||-.+|||+|+|++.++|++|+ .+|+..|.|..|.|.+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKN-ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKN-IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccc-eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 77899999999999999999999999999994 999888 89999999999999999999999 7899999999999998
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
|--
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 854
No 56
>KOG0106|consensus
Probab=99.43 E-value=4.5e-13 Score=113.57 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=103.1
Q ss_pred ccccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCC
Q psy10467 12 IHITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRG 89 (304)
Q Consensus 12 ~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~ 89 (304)
.+.....+|++||.+++ +.+|.| -.||+||+|.+..||+.|+...+ +.|++-.+.|..+.....
T Consensus 10 ~~~~~~~d~E~~f~~yg~~~d~~m-------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~------- 75 (216)
T KOG0106|consen 10 PYRARERDVERFFKGYGKIPDADM-------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR------- 75 (216)
T ss_pred CCccchhHHHHHHhhcccccccee-------ecccceeccCchhhhhcccchhcCceecceeeeeeccccccc-------
Confidence 44455566666777664 345666 34799999999999999997655 666655555544221110
Q ss_pred CCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCc
Q psy10467 90 TGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIV 169 (304)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v 169 (304)
+.+.++.+. .. .|.... . ....+.+.+.|.|++..+.|++|.++|..+|.+
T Consensus 76 -----~~g~~~~g~-----------------r~--~~~~~~-~----~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~ 126 (216)
T KOG0106|consen 76 -----GRGRPRGGD-----------------RR--SDSRRY-R----PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV 126 (216)
T ss_pred -----ccCCCCCCC-----------------cc--chhhcc-C----CcccccceeeeccchhhhhHHHHhhhhcccCCC
Confidence 000000000 00 011000 0 012667889999999999999999999999988
Q ss_pred cceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 170 PNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 170 ~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
.. ..+ ..++|||+|+..++|.+|+ .+++..+.++.|++
T Consensus 127 ~~-~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 127 TY-VDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ch-hhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 52 222 4568999999999999999 66999999999999
No 57
>KOG0111|consensus
Probab=99.41 E-value=2.3e-13 Score=113.51 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+||..++|+.-|...|-+||.|. .|.++.| .+++++|||||+|+-.|||..|| ++|..+|.||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~-dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIK-DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchh-hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 5678999999999999999999999999998 4999999 78999999999999999999999 8899999999999999
Q ss_pred cCCccccCCCC
Q psy10467 218 SGAQWFLSPPL 228 (304)
Q Consensus 218 ~~~~~~~~~~~ 228 (304)
+.+........
T Consensus 87 AkP~kikegsq 97 (298)
T KOG0111|consen 87 AKPEKIKEGSQ 97 (298)
T ss_pred cCCccccCCCC
Confidence 99876554443
No 58
>KOG0147|consensus
Probab=99.41 E-value=2.3e-12 Score=120.36 Aligned_cols=199 Identities=21% Similarity=0.215 Sum_probs=119.0
Q ss_pred chhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCC
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGG 92 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~ 92 (304)
++..++..|++++ +..|.+.+|. +|+++|||||+|.+.++|++|+..+| -.|-||.|.|......-...........
T Consensus 291 te~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d 370 (549)
T KOG0147|consen 291 TEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFD 370 (549)
T ss_pred hHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccc
Confidence 3456667777775 4678888887 89999999999999999999988766 8899999998764433211111000000
Q ss_pred CCC--CCCCCCCCCccchhhhHHHHHhhhcch-------hhhH-------HHhhc----CCC-----CCCCCCCCcEEEE
Q psy10467 93 FGG--VKSTPYGVGIFCISQFLAKWMRRAKRS-------EMDW-------ALKRQ----GAV-----LSGSAVDQCCMRL 147 (304)
Q Consensus 93 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~~~~----~~~-----~~~~~~~~~~v~v 147 (304)
... ....+.+. ..-.|.+.+.+...... .... ..... ... .+.......|+.+
T Consensus 371 ~D~~d~~gl~~~~--~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL 448 (549)
T KOG0147|consen 371 FDEDDRQGLSLGS--GGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLL 448 (549)
T ss_pred cchhhcccccccc--ccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHH
Confidence 000 00011111 11122222211111100 0000 00000 000 0111145678888
Q ss_pred cCC--CCCCCH--------HHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 148 QGL--PYECKK--------EDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 148 ~nL--p~~~t~--------~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
+|+ |.+.|+ +||.+-..++|.|. +|..|.+ +-|+.||.|.+.++|..|+ .+||.+|.|+.|.+.
T Consensus 449 ~nMFdpstete~n~d~eI~edV~Eec~k~g~v~---hi~vd~n--s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~ 523 (549)
T KOG0147|consen 449 SNMFDPSTETEPNWDQEIREDVIEECGKHGKVC---HIFVDKN--SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAK 523 (549)
T ss_pred hhcCCcccccCcchhhHHHHHHHHHHHhcCCee---EEEEccC--CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEE
Confidence 998 333332 67888889999986 4444432 3389999999999999999 789999999999987
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
.-...
T Consensus 524 ~~~~~ 528 (549)
T KOG0147|consen 524 YLPLE 528 (549)
T ss_pred Eeehh
Confidence 75444
No 59
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=1.7e-12 Score=90.89 Aligned_cols=70 Identities=27% Similarity=0.559 Sum_probs=63.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 144 ~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
+|+|+|||..+++++|+++|..+|.+. .+.+..+. +.++|+|||+|.+.++|..|+ .+++..+.|+.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~-~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIE-SVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEE-EEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 489999999999999999999999997 57777766 788999999999999999999 56889999999987
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=9.3e-13 Score=121.28 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCH--HHHHHHH-HhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDK--ENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~--~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
....+|||+||++++|++||...|..||.|. .|.|+ ..+| +|||||+|.+. .++.+|| .+||..+.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVk-dVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVD-AVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4567899999999999999999999999998 69998 4577 89999999987 7899999 689999999999999
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
.|.+.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 98664
No 61
>KOG0113|consensus
Probab=99.36 E-value=9e-12 Score=108.39 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHh-CCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLR-HKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~-~~~~~~gr~i~V~~ 217 (304)
..-+||||.-|+++++|.+|+..|+.||+|+ .|+|+.| .||+++|||||+|+++-+...|.+. +|..|+|+.|-|..
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ik-rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIK-RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcce-eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 6678999999999999999999999999998 6999999 8999999999999999999999954 99999999999987
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
....
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 6554
No 62
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.34 E-value=3.5e-12 Score=103.28 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=52.4
Q ss_pred chhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCc
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSS 82 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~ 82 (304)
++.+|+++|++++ +.+|.|+.|+ +|+++|||||+|+++++|++||+.++ ..|+++.|.|..+.....
T Consensus 47 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 3444445555553 3569999887 68999999999999999999998655 999999999998765543
No 63
>KOG0126|consensus
Probab=99.33 E-value=1.5e-13 Score=111.39 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..+..|||+|||+..||-||...|++||.+.+ |.+++| .||+++||||..|++..+..-|+ ++||..|.||.|+|.-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vd-inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVD-INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEE-EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45678999999999999999999999999984 999999 89999999999999999999999 8899999999999976
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 54
No 64
>KOG0114|consensus
Probab=99.32 E-value=7.3e-12 Score=92.63 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
.-.+.|||+|||+.+|.+++.++|..||+|. .|+|-. +..-+|-|||.|++..||.+|+ .++|..+.++++.|-.-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~Ir-QIRiG~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIR-QIRIGN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceE-EEEecC--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3456799999999999999999999999998 577654 4456789999999999999999 77999999999999765
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
++.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 554
No 65
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=9e-12 Score=86.79 Aligned_cols=68 Identities=22% Similarity=0.490 Sum_probs=61.6
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC-CCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 147 LQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY-AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 147 v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~-~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
|+|||..+++++|+++|+++|.|. .+.+..+. ++.++|+|||+|.+.++|..|+ .+++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIE-SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEe-EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 579999999999999999999987 58887774 6899999999999999999999 56889999999887
No 66
>KOG0131|consensus
Probab=99.31 E-value=2.9e-12 Score=104.09 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
....+|||+||+..++++-|.++|-+.|+|. .++++.| -+...+|||||+|.++|||+-|++ +|...|-||+|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv-~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVV-NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCcee-eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 5567899999999999999999999999999 5999999 578899999999999999999995 599999999999998
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
++
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 67
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=1.6e-11 Score=86.38 Aligned_cols=72 Identities=26% Similarity=0.474 Sum_probs=65.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 144 ~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
+|+|+|||..+++++|+++|..+|.+. .+.+..+..+.++|+|||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~-~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVE-SVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEE-EEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 389999999999999999999999987 688888776688999999999999999999 568888999999885
No 68
>KOG0108|consensus
Probab=99.31 E-value=5.5e-12 Score=118.15 Aligned_cols=78 Identities=21% Similarity=0.381 Sum_probs=73.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
+.|||+|+||++++++|.++|++.|.|. .++++.| .+|+++||||++|.+.++|..|+ .+|+.++.||.|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~-s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVL-SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccc-eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999999999998 5999999 89999999999999999999999 6799999999999988765
Q ss_pred c
Q psy10467 221 Q 221 (304)
Q Consensus 221 ~ 221 (304)
.
T Consensus 98 ~ 98 (435)
T KOG0108|consen 98 R 98 (435)
T ss_pred c
Confidence 4
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=1.3e-11 Score=108.90 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=72.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
..+|||+|||+.+|+++|.++|..||.+. .|.+..+ .+|+++|||||+|.+.++|..|+ .+++..|.|+.|.|..+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~-~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVK-RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCcee-EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 58999999999999999999999999997 6999888 69999999999999999999999 568899999999998865
Q ss_pred C
Q psy10467 220 A 220 (304)
Q Consensus 220 ~ 220 (304)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=1.2e-11 Score=87.40 Aligned_cols=64 Identities=28% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIE 73 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~ 73 (304)
+|++++++||.++|..++.| ..|.+..+++|.++|+|||+|.++++|++|+..++ ..++|+.|+
T Consensus 6 lp~~~~~~~l~~~f~~~g~v---------~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 6 LPPSTTEEDLRNFFSRFGPV---------EKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp STTT--HHHHHHHCTTSSBE---------EEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCc---------ceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 46677777777666665544 46999998889999999999999999999999988 899999874
No 71
>KOG4212|consensus
Probab=99.20 E-value=5.3e-11 Score=108.32 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEG-LEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~-~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...+.|||.|+||++.|+||+++|.. .|.|+ .|.++.|..|+++|+|.|||+++|.+++|+ .+|.+.+.||+|.|..
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~-yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVE-YVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceE-eeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 45566999999999999999999985 58887 799999999999999999999999999999 6699999999999976
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 554
No 72
>KOG0117|consensus
Probab=99.19 E-value=6.5e-11 Score=108.12 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCcc-CCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKI-GHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~-~gr~i~V~ 216 (304)
..++-|||+.||.++.|++|.-+|++.|.|- .++|++| .+|.++|||||+|.+.++|+.|+ .+|+++| .|+.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~-elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIY-ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcccee-eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 5567799999999999999999999999998 5999999 89999999999999999999999 6699888 58988886
Q ss_pred EcCC
Q psy10467 217 MSGA 220 (304)
Q Consensus 217 ~~~~ 220 (304)
.+..
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 5543
No 73
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=82.66 Aligned_cols=59 Identities=27% Similarity=0.278 Sum_probs=51.4
Q ss_pred HHHHHHHhh----cCCCccceEE-EeeC-CC--CCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 156 KEDVEKFLE----GLEIVPNGIT-IPHD-YA--GRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 156 ~~dl~~~F~----~~g~v~~~v~-~~~~-~~--g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
++||+++|+ .||.|. .|. ++.+ .+ |.++|+|||+|.+.++|.+|+ .+|+..++||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~-~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVG-KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCee-EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999998 464 5555 45 899999999999999999999 67999999999986
No 74
>KOG4307|consensus
Probab=99.16 E-value=5.2e-10 Score=107.04 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=92.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCc-ccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~-~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...+.+-+.++++++.+.|+++||.....-. +.|..+.-+.+ +|-++|+|....++++|+..|...+-.|.|+|.+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~--~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNAQS--TDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccccc--cchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 5667888899999999999999998876543 66666644444 88999999999999999999999999999999887
Q ss_pred CCccccCCCCCCC-CC-CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEecccccccc
Q psy10467 219 GAQWFLSPPLTNE-TP-ISRLDLTGSPVRSTICVLCHPLTPRSVRPRSVRQSEHEWWALARLGSFLISR 285 (304)
Q Consensus 219 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~rs~s~~~~~~~~~v~nl~~~~s~ 285 (304)
...+...+..... .+ +.-...-+.|.. -+++-.+.-..++.|...+.||+|..||+..+.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~-------~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~ 448 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIA-------PPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPI 448 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCC-------CcccccCCCCCCCCCCCccceEEeccCCccccc
Confidence 6654443332221 00 000001111111 111111111225677889999999999997663
No 75
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.12 E-value=4.1e-11 Score=84.21 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=52.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIE 73 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~ 73 (304)
+|.++|+++|..+|..+|.|. .+.+..+.+|+++|+|||+|.+.++|++||+. ++..++|+.|+
T Consensus 6 lp~~~t~~~l~~~f~~~g~i~---------~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGKIE---------SIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp ETTTSSHHHHHHHHHTTSTEE---------EEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCcCCHHHHHHHHHHhhhcc---------cccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 367777777777777766665 48888878899999999999999999999985 55999998874
No 76
>KOG0109|consensus
Probab=99.11 E-value=8.5e-11 Score=102.06 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
.+|||+|||..+++++|+.+|++||.|. ++.|+++ ||||..++...|+.|| ++++..|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVl-ECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVL-ECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceE-eeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3599999999999999999999999998 5888865 8999999999999999 68999999999999887765
No 77
>KOG1548|consensus
Probab=99.09 E-value=2.6e-09 Score=94.97 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=126.6
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
|-.+|.+++..+|..||-|..=- .-+.=.|.|-.+.+|..+|-|.+.|-..|+++.|++.++ ..+.|+.|.|.++.-.
T Consensus 143 P~DiT~dE~~~~~sKcGiI~~d~-~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 143 PLDITVDEFAEVMSKCGIIMRDP-QTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQ 221 (382)
T ss_pred CCcccHHHHHHHHHhcceEeccC-CCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhh
Confidence 55678888888888888776410 012235788888999999999999999999999999977 8889999999885322
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCC----CCCC-
Q psy10467 81 SSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLP----YECK- 155 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp----~~~t- 155 (304)
-. +..... ... ..-|. +. +..........+|...+ .........++|.++||= +..+
T Consensus 222 ~K----ge~~~~----~k~----k~k~~-~~--kk~~k~q~k~~dw~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~ 283 (382)
T KOG1548|consen 222 MK----GEYDAS----KKE----KGKCK-DK--KKLKKQQQKLLDWRPDR---DDPSKARADRTVILKNMFTPEDFEKNP 283 (382)
T ss_pred hc----cCcCcc----ccc----ccccc-cH--HHHHHHHHhhcccCCCc---cccccccCCcEEEeeecCCHHHhccCH
Confidence 11 000000 000 00000 00 00000011111121111 011123667899999982 3444
Q ss_pred ------HHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 156 ------KEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 156 ------~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
.+||.+-.++||.|. .|.+. + ..+.|.+-|.|.+.++|..|| .++|..++||.|..+.....
T Consensus 284 ~l~~dlkedl~eec~K~G~v~-~vvv~-d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 284 DLLNDLKEDLTEECEKFGQVR-KVVVY-D--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCcc-eEEEe-c--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 356677788999998 45543 2 356789999999999999999 56999999999998776543
No 78
>KOG1190|consensus
Probab=99.09 E-value=1.3e-09 Score=98.62 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=114.2
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
++.+|++-|-..|.-+|||- .|.|+.++. --|.|++.+...|+.|++.++ ..|-|+.|+|..+.-.
T Consensus 307 ~~~VT~d~LftlFgvYGdVq---------RVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQ---------RVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred hhccchhHHHHHHhhhcceE---------EEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 44556666666666655555 488886542 359999999999999998866 8999999999885443
Q ss_pred CccccC-CCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 81 SSKEAN-GRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
...... +....++.. .| ..+.+...++........-.+...++++.|+|.+++|+||
T Consensus 374 ~vqlp~egq~d~glT~-----------dy-----------~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~l 431 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTK-----------DY-----------GNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDL 431 (492)
T ss_pred cccCCCCCCccccccc-----------cC-----------CCCchhhccCcccccccccCCchhheeeccCCcccchhHH
Confidence 321100 000000000 00 0011111111111111111255678999999999999999
Q ss_pred HHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCe-EEEEEEcC
Q psy10467 160 EKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHR-LVTLVMSG 219 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr-~i~V~~~~ 219 (304)
+++|..-|-..+...+. ++.+-+|++.+++.|+|..|+ .++.+.+++. .|+|..++
T Consensus 432 k~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 432 KNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred HHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 99999987654222222 223348999999999999999 6788888765 88998765
No 79
>KOG0124|consensus
Probab=99.08 E-value=8.7e-11 Score=104.79 Aligned_cols=76 Identities=17% Similarity=0.386 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
.-.++|||+.+.|+..|+.|+..|..||+|. +|.+-.| .|++++|||||+|+-+|.|.-|+ .+|+..|+||.|+|-
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIK-SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcc-eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 4467899999999999999999999999998 6988888 79999999999999999999999 679999999999985
No 80
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=5.7e-10 Score=75.32 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=47.1
Q ss_pred HHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 159 VEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
|.++|++||.|. .|.+..+. +|+|||+|.+.++|..|+ .+|+..++|+.|+|.+|
T Consensus 1 L~~~f~~fG~V~-~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVK-KIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EE-EEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEE-EEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999998 57776433 689999999999999999 67999999999999874
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.03 E-value=2.2e-10 Score=99.76 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
++|++||+||+.||..||.|.+ |.|+.|.. ++|||||+|.++++|+.||.+++..|+|+.|.|..+...
T Consensus 12 Ls~~tTE~dLrefFS~~G~I~~---------V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 12 VSLKATERDIKEFFSFSGDIEY---------VEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCCCCHHHHHHHHHhcCCeEE---------EEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 4677777777777777777764 99987753 679999999999999999988889999999999986544
No 82
>KOG0226|consensus
Probab=99.03 E-value=2.2e-10 Score=97.74 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=107.5
Q ss_pred hhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCCCCCCCC
Q psy10467 22 QFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGFGGVKST 99 (304)
Q Consensus 22 ~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~~~~ 99 (304)
.-|+.+. .....++.+.-+.-+++||+.|.....-.++-..-+ ++++.++|+... +..+
T Consensus 118 ~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~--gtsw----------------- 178 (290)
T KOG0226|consen 118 VVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA--GTSW----------------- 178 (290)
T ss_pred hhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc--cccc-----------------
Confidence 3444442 233455566667788999999987776666654433 777766654433 1111
Q ss_pred CCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-
Q psy10467 100 PYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD- 178 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~- 178 (304)
...+..+|. ...++||++.|..+++.+.|-..|.+|-... ...+++|
T Consensus 179 -------------------edPsl~ew~------------~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~-~akviRdk 226 (290)
T KOG0226|consen 179 -------------------EDPSLAEWD------------EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQ-KAKVIRDK 226 (290)
T ss_pred -------------------CCcccccCc------------cccceeecccccccccHHHHHHHHHhccchh-hccccccc
Confidence 111112221 5678899999999999999999999997665 4677788
Q ss_pred CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 179 YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 179 ~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
.||+++||+||.|.+..|+..|+ ++||..++.|+|.+..+.-
T Consensus 227 RTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 227 RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 89999999999999999999999 7899999999999865543
No 83
>KOG4206|consensus
Probab=98.97 E-value=1.8e-08 Score=85.07 Aligned_cols=186 Identities=17% Similarity=0.158 Sum_probs=110.9
Q ss_pred HHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCCCCCC
Q psy10467 20 CSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGFGGVK 97 (304)
Q Consensus 20 I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~~ 97 (304)
|..+|+.|| +.+|... ++.+.+|-|||.|.+.+.|-.|+..++ -.+-|+++.+.++....-.....++.-...+..
T Consensus 30 L~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k 107 (221)
T KOG4206|consen 30 LYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKK 107 (221)
T ss_pred HHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCc
Confidence 445889997 5666554 456899999999999999999998766 667789999888665432221111100000000
Q ss_pred CCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEee
Q psy10467 98 STPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177 (304)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~ 177 (304)
.....-.... +..+ .+ .....+.. .....+...........+|+.|||.+++.+-+..+|.+|.-.. +|+++.
T Consensus 108 ~~~~~~~~~~--~~~~--~n-g~~~~~~~-~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~k-eir~i~ 180 (221)
T KOG4206|consen 108 INGEILARIK--QPLD--TN-GHFYNMNR-MNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFK-EIRLIP 180 (221)
T ss_pred cccccccccC--Cccc--cc-cccccccc-ccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccc-eeEecc
Confidence 0000000000 0000 00 00000000 0000000122246778999999999999999999999997776 588875
Q ss_pred CCCCCcccEEEEEecCHHHHHHHH-HhCCCccC-CeEEEEEEc
Q psy10467 178 DYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG-HRLVTLVMS 218 (304)
Q Consensus 178 ~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~-gr~i~V~~~ 218 (304)
.. .|.|||+|.+...|..|. .+.+..|- ...+.|..+
T Consensus 181 ~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 181 PR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CC----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 43 358999999999988888 56665554 666666544
No 84
>KOG0125|consensus
Probab=98.97 E-value=4.5e-10 Score=99.10 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=57.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|||..-|.||..+|...|-| .+|.|+.+..| ++|||||+|++.+||++|-++ |+..|.||+|||..+..
T Consensus 104 IPFrFRdpDL~aMF~kfG~V---------ldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 104 IPFRFRDPDLRAMFEKFGKV---------LDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCccccCccHHHHHHhhCce---------eeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 45666666665555554443 56999998888 999999999999999999977 55999999999999877
Q ss_pred CCcc
Q psy10467 80 TSSK 83 (304)
Q Consensus 80 ~~~~ 83 (304)
+-..
T Consensus 174 rV~n 177 (376)
T KOG0125|consen 174 RVHN 177 (376)
T ss_pred hhcc
Confidence 6443
No 85
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.96 E-value=3e-09 Score=93.67 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=97.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|+.+|+++|..+|..++.| ..|.|..|+ +|+++|||||+|.++++|..|+..++ ..+.|+.|.|.....
T Consensus 124 ~~~~~~~~l~~~F~~~g~~---------~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 124 PYDVTEEDLRELFKKFGPV---------KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CCCCCHHHHHHHHHhcCce---------eEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4555555555555555544 469998886 89999999999999999999999988 999999999988543
Q ss_pred --CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHH
Q psy10467 80 --TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKE 157 (304)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~ 157 (304)
....... ........ ................+++.+++..++..
T Consensus 195 ~~~~~~~~~---------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (306)
T COG0724 195 ASQPRSELS---------------------------------NNLDASFA-KKLSRGKALLLEKSDNLYVGNLPLKTAEE 240 (306)
T ss_pred ccccccccc---------------------------------cccchhhh-ccccccccccccccceeeccccccccchh
Confidence 0000000 00000000 00000111112556779999999999999
Q ss_pred HHHHHhhcCCCccceEEEeeCCCC-CcccEEEEEecCHHHHHHHH
Q psy10467 158 DVEKFLEGLEIVPNGITIPHDYAG-RCTGVAYIQFVDKENAEKAL 201 (304)
Q Consensus 158 dl~~~F~~~g~v~~~v~~~~~~~g-~~~G~afV~f~~~~~a~~A~ 201 (304)
++..+|..+|.+. .+.+.....+ ....+.++.+....++..++
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 241 ELADLFKSRGDIV-RASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred HHHHhccccccce-eeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 9999999999885 3555444322 24444444444444444333
No 86
>KOG0120|consensus
Probab=98.95 E-value=2.3e-09 Score=101.40 Aligned_cols=182 Identities=13% Similarity=0.148 Sum_probs=127.9
Q ss_pred CCcccccccccccccchhhHHhhcCCC-Cc--ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPI-VP--VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~-~~--~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s 77 (304)
+|++++++....||..--.+.-|-... +. ..+.| ..-+.||||+|.+.++|..|+..+...+.|+.+.+..-
T Consensus 183 ~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-----n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~ 257 (500)
T KOG0120|consen 183 IPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-----NLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRP 257 (500)
T ss_pred cCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-----cccccceeEEecCCCchhhhhcccchhhCCCCceeccc
Confidence 477888888888888743333222222 22 33333 24567999999999999999999888889988877663
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHH-HhhcCCCCCCCCCCCcEEEEcCCCCCCCH
Q psy10467 78 EGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWA-LKRQGAVLSGSAVDQCCMRLQGLPYECKK 156 (304)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~nLp~~~t~ 156 (304)
...-....... ..... .-...............++|+|||...++
T Consensus 258 ~d~~~~p~~~~----------------------------------~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~ 303 (500)
T KOG0120|consen 258 HDYQPVPGITL----------------------------------SPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTE 303 (500)
T ss_pred ccccCCccchh----------------------------------hhccccccCCcccccCcccccchhhhccCcCccCH
Confidence 22211000000 00000 00000111122355677999999999999
Q ss_pred HHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCcc
Q psy10467 157 EDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQW 222 (304)
Q Consensus 157 ~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~ 222 (304)
..++++...||.+. ...++.+ .+|.++||||.+|.+......|+ .+||..+++..|.|..+....
T Consensus 304 ~q~~Ell~~fg~lk-~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 304 DQVKELLDSFGPLK-AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred HHHHHHHHhcccch-hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999998 5888888 67999999999999999999999 789999999999998876653
No 87
>smart00360 RRM RNA recognition motif.
Probab=98.91 E-value=1.6e-09 Score=75.17 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=51.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIEL 74 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V 74 (304)
+|+.++++||+.+|..+|.|. .+.+..++ ++.++|+|||+|.+.++|..|++.++ ..++++.|.|
T Consensus 4 l~~~~~~~~l~~~f~~~g~v~---------~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 4 LPPDVTEEELRELFSKFGKIE---------SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCcccCHHHHHHHHHhhCCEe---------EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 356677777776666655444 58888776 58999999999999999999998876 7888888876
No 88
>KOG0149|consensus
Probab=98.89 E-value=6.4e-10 Score=94.11 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=53.6
Q ss_pred cccccchhhHHhhcCCCCc-ceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEec
Q psy10467 11 LIHITYCLLCSQFFKPIVP-VNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77 (304)
Q Consensus 11 ~~~~~~~~~I~~fF~~~~~-~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s 77 (304)
|.|.+....++++|+.||+ .+..++.|+ +||++|||||+|++.+.|.+|++..+-.|+||+.-+..+
T Consensus 20 L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 20 LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 4566666667777777653 456677777 699999999999999999999999999999997766653
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=1.6e-09 Score=93.06 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=55.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~ 81 (304)
.|++||+||..||+.||.|. +|.|+.| +...|||||+|+++++|+.||.+++..|.++.|.|.+.....
T Consensus 14 S~~tTE~dLrefFS~~G~I~---------~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 14 SPKATEKDVYDFFSHCGAIE---------HVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CCCCCHHHHHHHHHhcCCeE---------EEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcccc
Confidence 46666777776666666666 4999877 566799999999999999999999999999999998865443
No 90
>KOG0415|consensus
Probab=98.88 E-value=2.9e-09 Score=94.85 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 138 ~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
..++...|||.-|..-+|.+||.-+|+.||+|. ++.++.| .||.+--||||+|++.+++++|. +|++..|++|.|.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~-sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIV-SCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccce-eeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 347788999999999999999999999999998 6899999 79999999999999999999999 88999999999999
Q ss_pred EEcCC
Q psy10467 216 VMSGA 220 (304)
Q Consensus 216 ~~~~~ 220 (304)
..++.
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 77643
No 91
>KOG0126|consensus
Probab=98.88 E-value=3.8e-10 Score=91.84 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+||.+||+||+.+|+++|+|. +|.|+.|+ +|+++||||+.|++..+.-.|+..+| -.|.||.|.|-...
T Consensus 43 l~~~LtEgDil~VFSqyGe~v---------dinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 43 LPYELTEGDILCVFSQYGEIV---------DINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred CcccccCCcEEEEeeccCceE---------EEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 589999999999999988776 59999998 79999999999999999999997766 89999999998744
No 92
>KOG0129|consensus
Probab=98.87 E-value=2e-08 Score=93.71 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=106.4
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCC--C--Ccee---eEEEEeCCHHHHHHHHHHcCCcCCCceEEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA--G--RSSG---EADVEFSSVDDAQRALQRHKSNMGDRYIEL 74 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~--G--r~~G---~aFV~F~s~edA~~Al~~~~~~i~~r~I~V 74 (304)
||.++|+.|...|.. |+...|.-....+ + -++| |+|+.|+++..++.-|...-..-++-++.|
T Consensus 268 p~dise~~i~~~F~~----------FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 268 PWDITEAQINASFGQ----------FGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred CccccHHHHHhhccc----------ccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 556666655555555 4433355442222 2 2456 999999999999987766554444445555
Q ss_pred EecCCCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCC
Q psy10467 75 YMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYEC 154 (304)
Q Consensus 75 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~ 154 (304)
............. | ....+.+...... ..-...+||||++||--+
T Consensus 338 ss~~~k~k~VQIr------------P------------------W~laDs~fv~d~s-----q~lDprrTVFVGgvprpl 382 (520)
T KOG0129|consen 338 SSPTIKDKEVQIR------------P------------------WVLADSDFVLDHN-----QPIDPRRTVFVGGLPRPL 382 (520)
T ss_pred ecCcccccceeEE------------e------------------eEeccchhhhccC-----cccCccceEEecCCCCcc
Confidence 5422222111100 0 0011111111111 112667899999999999
Q ss_pred CHHHHHHHhh-cCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccC----CeEEEEEEc
Q psy10467 155 KKEDVEKFLE-GLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIG----HRLVTLVMS 218 (304)
Q Consensus 155 t~~dl~~~F~-~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~----gr~i~V~~~ 218 (304)
|.++|-.+|+ -||.|. .|-|-+| .-+-++|-|=|+|.+.....+||...-..|. .+.|+|.+-
T Consensus 383 ~A~eLA~imd~lyGgV~-yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 383 TAEELAMIMEDLFGGVL-YVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred hHHHHHHHHHHhcCceE-EEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 9999999999 689887 6788777 6678999999999999999999955333332 345666443
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=98.85 E-value=8.6e-09 Score=72.94 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=43.8
Q ss_pred hhHHhhcC----CCC-cceEE-EeeCC-C--CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEE
Q psy10467 18 LLCSQFFK----PIV-PVNIL-LLTDD-A--GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIEL 74 (304)
Q Consensus 18 ~~I~~fF~----~~~-~~~i~-i~~d~-~--Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V 74 (304)
.+|+++|+ .++ +..|. |+.++ + |+++|||||+|.+.++|++|+..++ ..++||.|.+
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 45566666 564 35564 45444 4 8899999999999999999998755 9999998875
No 94
>KOG0533|consensus
Probab=98.85 E-value=1.1e-08 Score=88.79 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|+|.|||+.++++||+++|..|+.+. .+.+-++..|.+.|.|-|.|...+||..|+ .+++..++|+.|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~-r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELK-RVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccce-EEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 4447899999999999999999999998776 688888899999999999999999999999 56999999999999887
Q ss_pred CCccc
Q psy10467 219 GAQWF 223 (304)
Q Consensus 219 ~~~~~ 223 (304)
....+
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 66543
No 95
>KOG4205|consensus
Probab=98.85 E-value=2.9e-09 Score=95.96 Aligned_cols=83 Identities=18% Similarity=0.309 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
..++|||++|++.++++.|++.|.+||.|.+ +.++.| .+++++||+||+|++.+.+.++|...-+.|+|+.|++..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d-~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTD-CVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceee-EEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 5678999999999999999999999999985 677777 78999999999999999999999888899999999999988
Q ss_pred Ccccc
Q psy10467 220 AQWFL 224 (304)
Q Consensus 220 ~~~~~ 224 (304)
+.+..
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76543
No 96
>KOG4208|consensus
Probab=98.82 E-value=1.2e-08 Score=84.99 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC-CCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGL-EIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~-g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
.....++|..+|...-+..|..+|.++ |.|. .+++-++ .||.++|||||+|++++.|+-|- .||++.|.++.|.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~-r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVT-RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeE-EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 555679999999999999999999999 6665 4555566 89999999999999999999999 789999999999997
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
.--+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76554
No 97
>smart00362 RRM_2 RNA recognition motif.
Probab=98.78 E-value=6.5e-09 Score=72.35 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=43.9
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEE
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIEL 74 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V 74 (304)
.+|+++|..++ +..+.+..++ |.++|+|||+|.+.++|++|++.++ ..+.|+.|.|
T Consensus 14 ~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 14 EDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred HHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 44445555554 3468887766 8899999999999999999998866 8888988876
No 98
>KOG1457|consensus
Probab=98.76 E-value=2.7e-07 Score=77.75 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCcc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKI 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~ 208 (304)
....+|||-||..+|||++|+.+|+.|--.. +.-+....|.+ .|||+|+..+.|..|| .+.|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~--~l~~~~~~g~~--vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRARGGMP--VAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCce--EEEEecCCCcc--eEeecHHHHHHHHHHHHHhhccee
Confidence 4456899999999999999999999985433 33333345544 7999999999999999 5555443
No 99
>KOG4209|consensus
Probab=98.73 E-value=5.7e-08 Score=84.46 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
.....|+|+|+.+.+|.+++..+|+.+|.+. .|.++.| .+|.++|||||+|.+.+.++.|+.+|+..|.|+.|+|...
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~-~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGIN-RVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCcc-ceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 5567799999999999999999999999997 6889888 4668999999999999999999999999999999999876
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 543
No 100
>KOG0113|consensus
Probab=98.72 E-value=1.3e-08 Score=88.92 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=54.2
Q ss_pred ccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 12 IHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 12 ~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
++.+++..|+..|+.|+ ++.|+|+.|+ +|+++|||||+|+.+-++..|-+. ++..|+|+.|.|-.-...
T Consensus 110 nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 110 NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGR 181 (335)
T ss_pred cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccc
Confidence 34455556666666664 3569999997 899999999999999999999987 459999998888764443
No 101
>KOG0128|consensus
Probab=98.72 E-value=4.6e-09 Score=102.94 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=105.9
Q ss_pred hhhHHhhcCCCC-cceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCccccCCCCCCCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGGFG 94 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~ 94 (304)
..+|..+|.+++ ...|.+. .-.+|+.+|+|||+|..++++.+||......+-|
T Consensus 681 ~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------------------- 735 (881)
T KOG0128|consen 681 EEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------------------- 735 (881)
T ss_pred CchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-------------------------
Confidence 456666666653 2344444 3335899999999999999999999876533211
Q ss_pred CCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEE
Q psy10467 95 GVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGIT 174 (304)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~ 174 (304)
...|+|+|+|+.+|.+.++.++.+.|.+. .+.
T Consensus 736 -----------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~-~~~ 767 (881)
T KOG0128|consen 736 -----------------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVT-SLR 767 (881)
T ss_pred -----------------------------------------------hhhhheeCCCCCCchHHHHhhccccCCcc-ccc
Confidence 12399999999999999999999999998 477
Q ss_pred EeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 175 IPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 175 ~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
++....|+++|.|+|.|.++.++..++ +.+...+.-+.++|..+++.
T Consensus 768 ~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 768 LVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 887899999999999999999999999 66888888888888776663
No 102
>KOG0106|consensus
Probab=98.72 E-value=2.7e-08 Score=84.62 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=83.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
..|||++||+.+.+.||..||.+||.+.+ |.+. .||+||+|++.-||..|+ .+|+..|+|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d-~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPD-ADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccc-ceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 35999999999999999999999999983 5554 369999999999999999 78999999877777665543
Q ss_pred cccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEecccccccccccccCCC
Q psy10467 222 WFLSPPLTNETPISRLDLTGSPVRSTICVLCHPLTPRSVRPRSVRQSEHEWWALARLGSFLISRTHQIIIPR 293 (304)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~rs~s~~~~~~~~~v~nl~~~~s~~~~~~~~~ 293 (304)
.... +.|..+ .+.+ -.+.-..|+...+.++|.|++..++-....++-+
T Consensus 74 ~~~~---------------g~~~~g-------~r~~--~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~ 121 (216)
T KOG0106|consen 74 RRGR---------------GRPRGG-------DRRS--DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR 121 (216)
T ss_pred cccc---------------CCCCCC-------Cccc--hhhccCCcccccceeeeccchhhhhHHHHhhhhc
Confidence 2111 111000 0000 0011122567789999999998886555555444
No 103
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.72 E-value=1.8e-08 Score=70.43 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=50.5
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELY 75 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~ 75 (304)
|+.+++++|+.+|..++.| ..+.+..++.++++|+|||+|.+.++|+.|++.++ ..+.++.|.|.
T Consensus 8 ~~~~~~~~i~~~~~~~g~i---------~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 8 PPDVTEEDLRELFSKFGKV---------ESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CCccCHHHHHHHHHhcCCE---------EEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4555666666655555444 45888888877889999999999999999998877 55889988775
No 104
>KOG4207|consensus
Probab=98.71 E-value=5.5e-09 Score=86.77 Aligned_cols=68 Identities=22% Similarity=0.162 Sum_probs=58.2
Q ss_pred ccccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 10 ILIHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 10 l~~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
=|.+-|+..+|+..|+.|| +.+|.|..|. ++.++|||||.|....||++||+.++ ..|+|+.|.|..+
T Consensus 20 NLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 20 NLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3467777888888888885 5789999998 68899999999999999999998766 9999999888764
No 105
>KOG0120|consensus
Probab=98.71 E-value=2.8e-08 Score=94.13 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=101.5
Q ss_pred eEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCCCCCCCCCCCCCccch
Q psy10467 31 NILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCI 108 (304)
Q Consensus 31 ~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (304)
.-.++.|. +|.++||||-+|.++.....|+.-.| ..++++.+.|..+..............
T Consensus 318 ~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~----------------- 380 (500)
T KOG0120|consen 318 AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNIS----------------- 380 (500)
T ss_pred hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcc-----------------
Confidence 45666666 48999999999999999999998866 889999888877544332221110000
Q ss_pred hhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCC--CCCC-CH-------HHHHHHhhcCCCccceEEEeeC
Q psy10467 109 SQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGL--PYEC-KK-------EDVEKFLEGLEIVPNGITIPHD 178 (304)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nL--p~~~-t~-------~dl~~~F~~~g~v~~~v~~~~~ 178 (304)
......+... ...........|.+.|+ |.+. .+ +|++.-+.+||.|. .|.+..+
T Consensus 381 ------------~~~~~~i~~~---~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~-~v~ipr~ 444 (500)
T KOG0120|consen 381 ------------QSQVPGIPLL---MTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVR-SVEIPRP 444 (500)
T ss_pred ------------ccccccchhh---hcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCcee-EEecCCC
Confidence 0000000000 00011133344555554 1111 11 45566667899998 5888766
Q ss_pred -C---CCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCcc
Q psy10467 179 -Y---AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQW 222 (304)
Q Consensus 179 -~---~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~ 222 (304)
. .....|--||+|.+.+++++|+ +++|..+.||.|-...-....
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 3 2356688999999999999999 789999999998876655443
No 106
>KOG1190|consensus
Probab=98.69 E-value=2.1e-06 Score=78.21 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=67.2
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 142 QCCMRLQGLP-YECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 142 ~~~v~v~nLp-~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
...|.|.||. +.+|.+-|-.+|+-||.|. .|.|+.+.. --|.|++.+...|+-|+ .++|+.|.|+.|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVq-RVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQ-RVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceE-EEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5788899985 5689999999999999998 799987622 35999999999999999 779999999999999987
Q ss_pred Ccccc
Q psy10467 220 AQWFL 224 (304)
Q Consensus 220 ~~~~~ 224 (304)
-....
T Consensus 372 H~~vq 376 (492)
T KOG1190|consen 372 HTNVQ 376 (492)
T ss_pred Ccccc
Confidence 66543
No 107
>KOG0153|consensus
Probab=98.68 E-value=6.3e-08 Score=86.34 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h-CCCccCCeEEEEE
Q psy10467 139 AVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-R-HKEKIGHRLVTLV 216 (304)
Q Consensus 139 ~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~-~~~~~~gr~i~V~ 216 (304)
...-.+|||+||-..+++.||+++|.+||.+. .|.++. .+|+|||+|.+.+.|+.|.. . |...|+|+.|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeir-si~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIR-SIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCee-eEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 36678999999999999999999999999998 577664 34599999999999999993 3 8889999999999
Q ss_pred EcCC
Q psy10467 217 MSGA 220 (304)
Q Consensus 217 ~~~~ 220 (304)
+..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9887
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.68 E-value=5.7e-08 Score=65.42 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=42.2
Q ss_pred HHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 20 CSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 20 I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
|.++|+.+|. ..|.+..+. +|+|||+|.+.++|+.|++.++ ..++|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567888864 567775433 5899999999999999998655 889999999876
No 109
>KOG4210|consensus
Probab=98.67 E-value=5.1e-08 Score=87.49 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=108.1
Q ss_pred hhHHhhcCCCC-cceEEEee-CCCCCceeeEEEEeCCHHHHHHHHHHcCC-cCCCceEEEEecCCCCccccCCCCCCCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLT-DDAGRSSGEADVEFSSVDDAQRALQRHKS-NMGDRYIELYMEEGTSSKEANGRGTGGFG 94 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~-d~~Gr~~G~aFV~F~s~edA~~Al~~~~~-~i~~r~I~V~~s~~~~~~~~~~~~~~~~~ 94 (304)
.++..||...+ ..+..+.. .....++|+++|.|+..+.+..||..... .+.++.++.-........
T Consensus 103 ~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~----------- 171 (285)
T KOG4210|consen 103 SEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLR----------- 171 (285)
T ss_pred ccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccccccc-----------
Confidence 34555555443 23333433 33578999999999999999999998884 555554433221111000
Q ss_pred CCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEE-EcCCCCCCCHHHHHHHhhcCCCccceE
Q psy10467 95 GVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMR-LQGLPYECKKEDVEKFLEGLEIVPNGI 173 (304)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~nLp~~~t~~dl~~~F~~~g~v~~~v 173 (304)
..+. ..........+++ |+||++++++++|+.+|..+|.+. .+
T Consensus 172 ------------------------~~n~-----------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~-~~ 215 (285)
T KOG4210|consen 172 ------------------------PKNK-----------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT-SV 215 (285)
T ss_pred ------------------------ccch-----------hcccccCccccceeecccccccchHHHhhhccCcCcce-ee
Confidence 0000 0000012333455 999999999999999999999988 57
Q ss_pred EEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCc
Q psy10467 174 TIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 174 ~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~ 221 (304)
++..+ .+|.++|||||.|.+..++..|+......+.++++.|....+.
T Consensus 216 r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 216 RLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 88777 7899999999999999999999955778899999998776543
No 110
>KOG4661|consensus
Probab=98.66 E-value=5.7e-08 Score=91.48 Aligned_cols=81 Identities=11% Similarity=0.228 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..++.|+|.||...+...||+++|++||.|. +..++.+ .+--.+-|+||++.+.++|.+|| .++.++|.||.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVv-GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVV-GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhccee-ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 5567899999999999999999999999998 6888887 34345679999999999999999 7899999999999988
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8654
No 111
>KOG0146|consensus
Probab=98.65 E-value=5.4e-08 Score=83.89 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCC-CccCC--eEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHK-EKIGH--RLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~-~~~~g--r~i~V 215 (304)
...++|||+-|...-.|+|++.+|..||.++ ++.+++..+|.++|+|||.|.+..||..|| .+++ ..+-| ..|-|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~-e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIE-ECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcc-eeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 4668899999999999999999999999998 699999999999999999999999999999 6777 55654 56778
Q ss_pred EEcCCcc
Q psy10467 216 VMSGAQW 222 (304)
Q Consensus 216 ~~~~~~~ 222 (304)
..+..+.
T Consensus 96 K~ADTdk 102 (371)
T KOG0146|consen 96 KFADTDK 102 (371)
T ss_pred EeccchH
Confidence 7776653
No 112
>KOG0132|consensus
Probab=98.65 E-value=6.9e-08 Score=93.87 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
..++||+|++|+..++++||.++|+.||.|. +|.++ -++|+|||.+....||++|| +++.+.+.++.|+|.++
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiq-Si~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQ-SIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccce-eEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 5679999999999999999999999999998 56665 36789999999999999999 77999999999999998
Q ss_pred CCccccC
Q psy10467 219 GAQWFLS 225 (304)
Q Consensus 219 ~~~~~~~ 225 (304)
...-++.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 7664443
No 113
>KOG4206|consensus
Probab=98.62 E-value=1.3e-07 Score=79.96 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCCCCHHHHHH----HhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 142 QCCMRLQGLPYECKKEDVEK----FLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~----~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
..+|||.||+..+..++|+. +|++||.|. .|+.-.+.+.+|-|||.|.+.+.|..|+ .++|.-+-|.+++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~il---dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL---DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeE---EEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999888 999999886 3333468899999999999999999999 789999999999998
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
+|..+
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 88665
No 114
>KOG0122|consensus
Probab=98.61 E-value=1.2e-07 Score=80.95 Aligned_cols=65 Identities=25% Similarity=0.258 Sum_probs=52.5
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
+.+.+|+++|.+|+ +..|.|.+|+ +|.++|||||.|.+.+||++||..++ .-+++-.+.|..+.+
T Consensus 201 ~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 201 MREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred cChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 34567799999996 5889999998 69999999999999999999999877 444544667766543
No 115
>KOG0116|consensus
Probab=98.61 E-value=2.2e-07 Score=86.98 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=66.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
..+|||+|||++++..+|+++|..||.|. ...|... ..++...||||+|.+.++++.||.-+-..|+++.+.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik-~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIK-EGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhccccc-ccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 45599999999999999999999999998 4555443 445555899999999999999998888999999999977554
No 116
>KOG0121|consensus
Probab=98.56 E-value=4.9e-08 Score=75.26 Aligned_cols=65 Identities=26% Similarity=0.239 Sum_probs=53.2
Q ss_pred cccccccccccccchhhHHhhcCCCCcceEEEeeCCCC-CceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 3 FSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAG-RSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 3 ~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~G-r~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
|.+||++|-+.|..||+|+. |.|-.|++- .+=|||||+|-+.++|+.||+..+ ..|+.|+|.+-+
T Consensus 46 fyttEEqiyELFs~cG~irr---------iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 46 FYTTEEQIYELFSKCGDIRR---------IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred eeecHHHHHHHHHhccchhe---------eEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 55667777777777777774 777778754 577999999999999999999866 999999999876
No 117
>KOG0108|consensus
Probab=98.56 E-value=5.9e-08 Score=91.29 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=59.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+||+.+|++|.+.|.+.|-|. +++++.|+ +|+++||||++|.++++|+.|++.+| ..++||+++|.++.
T Consensus 26 ip~~~se~~l~~~~~~~g~v~---------s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 26 IPYEGSEEQLLSIFSGVGPVL---------SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred CCCcccHHHHHHHHhccCccc---------eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 467777777776666655444 69999998 69999999999999999999999988 99999999998865
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 544
No 118
>KOG0107|consensus
Probab=98.53 E-value=7e-08 Score=78.35 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=46.7
Q ss_pred hhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCC
Q psy10467 18 LLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTS 81 (304)
Q Consensus 18 ~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~ 81 (304)
.+|+..|..|++ ..|.|-. ++.|||||+|+++.||+.|+..++ +.|.|..|.|..+....
T Consensus 25 ~eLE~~F~~yG~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 25 RELERAFSKYGPLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred HHHHHHHHhcCcceeEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 455666666643 5687765 477899999999999999998766 99999989888866543
No 119
>KOG4454|consensus
Probab=98.50 E-value=4.4e-08 Score=82.18 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh-CCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR-HKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~-~~~~~~gr~i~V~~~ 218 (304)
...++|||.||...++|+-|.++|-+.|+|. .|.|..+.+++.+ ||||.|.++..+.-|+++ ||..+.++.|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~-kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVY-KVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceE-EEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 5567899999999999999999999999998 6888888889888 999999999999999966 999999999888654
Q ss_pred C
Q psy10467 219 G 219 (304)
Q Consensus 219 ~ 219 (304)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 120
>PLN03213 repressor of silencing 3; Provisional
Probab=98.49 E-value=9.2e-08 Score=88.79 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=53.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCH--HHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSV--DDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~--edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
+.|++|++||...|..+|.|. +|.|+ ..+| +|||||+|.+. .++++||..++ ..+.||.|+|..+
T Consensus 18 LSydVTEDDLravFSeFGsVk---------dVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 18 LGESVGRDDLLKIFSPMGTVD---------AVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCCCCCHHHHHHHHHhcCCee---------EEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 357777777777777766666 59998 4467 89999999987 78999998766 9999999999986
Q ss_pred CC
Q psy10467 78 EG 79 (304)
Q Consensus 78 ~~ 79 (304)
.+
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 54
No 121
>KOG1548|consensus
Probab=98.46 E-value=4.9e-07 Score=80.71 Aligned_cols=82 Identities=15% Similarity=0.279 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccc-------eEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCe
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN-------GITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~-------~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr 211 (304)
.-...|||.|||.++|-+++.++|+++|.|.. .|.|..+..|..+|-|.+.|-..+++.-|++ +|+..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 33456999999999999999999999997642 3778888899999999999999999999995 599999999
Q ss_pred EEEEEEcCCc
Q psy10467 212 LVTLVMSGAQ 221 (304)
Q Consensus 212 ~i~V~~~~~~ 221 (304)
.|+|..|+-+
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999888644
No 122
>KOG1457|consensus
Probab=98.45 E-value=1.7e-06 Score=72.99 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC--CCCCcccEEEEEecCHHHHHHHH-HhCCCccC---CeEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD--YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG---HRLV 213 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~--~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~---gr~i 213 (304)
..-++|||.|||.++...+|..+|..|---+ +..+-.. ...-++-+|||+|.+..+|.+|+ .+||..++ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYE-gslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYE-GSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCcc-ceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4568999999999999999999999985554 2333322 22235579999999999999999 67998885 6778
Q ss_pred EEEEcCCc
Q psy10467 214 TLVMSGAQ 221 (304)
Q Consensus 214 ~V~~~~~~ 221 (304)
+|++++..
T Consensus 111 hiElAKSN 118 (284)
T KOG1457|consen 111 HIELAKSN 118 (284)
T ss_pred EeeehhcC
Confidence 88777554
No 123
>KOG1456|consensus
Probab=98.41 E-value=1.2e-05 Score=72.64 Aligned_cols=171 Identities=13% Similarity=0.122 Sum_probs=108.6
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGG 92 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~ 92 (304)
..|.-|-.+|--|+ +..|.+++.+. |.|.|++.++..+++|+.-+| ..|=|.+|.|+.+........ ++.
T Consensus 300 ~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~-~pf--- 371 (494)
T KOG1456|consen 300 MNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPV-QPF--- 371 (494)
T ss_pred cchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccC-Cce---
Confidence 34666777777775 57799987544 689999999999999998766 677778888888654433221 100
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHH-HhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccc
Q psy10467 93 FGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWA-LKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171 (304)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~ 171 (304)
..+. |...|-+|.....++... .... +++ -...+.+|+.-|.|..+||+.|.++|...+....
T Consensus 372 -----lLpD--gSpSfKdys~SkNnRFss--p~qAsKNr-------Iq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~ 435 (494)
T KOG1456|consen 372 -----LLPD--GSPSFKDYSGSKNNRFSS--PEQASKNR-------IQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPT 435 (494)
T ss_pred -----ecCC--CCcchhhcccccccccCC--hhHhhccc-------ccCCcceeEEecCCCccCHHHHHHHhhhcCCCcc
Confidence 0000 111111111111111111 1111 111 1256788999999999999999999998765443
Q ss_pred eEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCC
Q psy10467 172 GITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH 210 (304)
Q Consensus 172 ~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g 210 (304)
.|++....+-++. -|.+||++.++|..|| .+|...|.+
T Consensus 436 svkvFp~kserSs-sGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 436 SVKVFPLKSERSS-SGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eEEeecccccccc-cceeeeehHHHHHHHHHHhccccccC
Confidence 4666544444433 5899999999999999 567776654
No 124
>KOG0130|consensus
Probab=98.40 E-value=1.7e-07 Score=72.90 Aligned_cols=64 Identities=20% Similarity=0.098 Sum_probs=52.6
Q ss_pred chhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
++.+|.+.|..|+ +++|+|-.|. +|-.+|||+|+|++.++|+.|+..+| ..|.+..|.|-+|.-
T Consensus 85 tEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 85 TEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred hHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4566666777665 3679988776 79999999999999999999998877 888899998887543
No 125
>KOG0111|consensus
Probab=98.38 E-value=3.6e-07 Score=76.74 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=62.9
Q ss_pred cccccccccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCC
Q psy10467 5 FYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTS 81 (304)
Q Consensus 5 ~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~ 81 (304)
+|+..|-.-++ +..|...|=+|+ +.+|.++.|. +++++|||||+|.-.|||..||..+| ..|-||.|.|..+.+..
T Consensus 13 lYVGGladeVt-ekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 13 LYVGGLADEVT-EKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred EEeccchHHHH-HHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 44444444333 356677778886 5889999987 78999999999999999999998877 99999999999987765
Q ss_pred ccc
Q psy10467 82 SKE 84 (304)
Q Consensus 82 ~~~ 84 (304)
.++
T Consensus 92 ike 94 (298)
T KOG0111|consen 92 IKE 94 (298)
T ss_pred ccC
Confidence 544
No 126
>KOG4208|consensus
Probab=98.32 E-value=4.7e-07 Score=75.49 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=45.0
Q ss_pred hhhHHhhcCCC-Cc-ceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 17 CLLCSQFFKPI-VP-VNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 17 ~~~I~~fF~~~-~~-~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
...|..||.++ ++ ..+++.+++ +|.++|||||+|++++.|.-|-+.+| -.|+++-+++..
T Consensus 63 e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 63 ETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred HHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 34455566655 43 456665655 89999999999999999999987766 667788777665
No 127
>KOG1456|consensus
Probab=98.18 E-value=8.6e-05 Score=67.22 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 138 SAVDQCCMRLQGLPYE-CKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 138 ~~~~~~~v~v~nLp~~-~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
....+..+.|.||... .+.+-|-++|-.||.|+ .|.+++... |-|.|++.+..++++|+ .+|+..|-|..|+|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~-rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVE-RVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCcee-eEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3477889999999876 56677999999999998 799987644 48999999999999999 78998889999999
Q ss_pred EEcCCc
Q psy10467 216 VMSGAQ 221 (304)
Q Consensus 216 ~~~~~~ 221 (304)
-.+...
T Consensus 358 ~~SkQ~ 363 (494)
T KOG1456|consen 358 CVSKQN 363 (494)
T ss_pred eecccc
Confidence 776543
No 128
>KOG0114|consensus
Probab=98.00 E-value=6e-06 Score=61.52 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=52.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
.||++|-++.-..|-.+|.|++ |+|-..+ ..+|.|||.|++..||.+|+..++ ..+.++++.|..
T Consensus 26 Lp~~ITseemydlFGkyg~IrQ---------IRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 26 LPFKITSEEMYDLFGKYGTIRQ---------IRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred CCccccHHHHHHHhhcccceEE---------EEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3777887777777777666665 8886444 367999999999999999998866 889999988876
No 129
>KOG4660|consensus
Probab=97.99 E-value=5.6e-06 Score=78.30 Aligned_cols=70 Identities=17% Similarity=0.358 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
....+|+|-|||.++++++|..+|+.||.|. +|+.... .+|..||+|-+..+|++|+ ++++..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir-~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR-EIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchh-hhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 6778999999999999999999999999998 5766543 4568999999999999999 7899999999887
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.90 E-value=0.0001 Score=55.22 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=60.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccC----CeEEE
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGL--EIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG----HRLVT 214 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~--g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~----gr~i~ 214 (304)
.||-++|+|...|.++|.+++... |... =+.++.| .++.+.|||||-|.++++|.+-. ..+|..+. .+..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yD-F~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYD-FFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcce-EEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 479999999999999999998764 3332 4567777 78899999999999999999888 45887664 44556
Q ss_pred EEEcCC
Q psy10467 215 LVMSGA 220 (304)
Q Consensus 215 V~~~~~ 220 (304)
|..|.-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 666543
No 131
>KOG1995|consensus
Probab=97.89 E-value=1e-05 Score=72.84 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccc-------eEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN-------GITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGH 210 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~-------~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~g 210 (304)
....+|||.+||..+++++|.++|.++++|.- .|.|-++ .|++++|.|.|.|+++..|+.|+. .++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 45567999999999999999999999986631 2555566 799999999999999999999995 59999999
Q ss_pred eEEEEEEcCCc
Q psy10467 211 RLVTLVMSGAQ 221 (304)
Q Consensus 211 r~i~V~~~~~~ 221 (304)
..|+|.++...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999888654
No 132
>KOG4454|consensus
Probab=97.87 E-value=5.8e-06 Score=69.64 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=94.5
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGFG 94 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~ 94 (304)
+..|.++|-..| |..|.|..++++..+ ||||.|+++-.++.|++++| ..+-++.|.+..
T Consensus 23 eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~------------------ 83 (267)
T KOG4454|consen 23 EELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL------------------ 83 (267)
T ss_pred HHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc------------------
Confidence 567888888775 577888888899888 99999999999999999877 666666555443
Q ss_pred CCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcC----CCCCCCHHHHHHHhhcCCCcc
Q psy10467 95 GVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQG----LPYECKKEDVEKFLEGLEIVP 170 (304)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n----Lp~~~t~~dl~~~F~~~g~v~ 170 (304)
+.++ |...++++.+.+.|+..+++.
T Consensus 84 ---------------------------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~ 112 (267)
T KOG4454|consen 84 ---------------------------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIE 112 (267)
T ss_pred ---------------------------------------------------ccCCCcchhhhhcchhhheeeecccCCCC
Confidence 2222 444678888899999999998
Q ss_pred ceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh-CCCcc
Q psy10467 171 NGITIPHDYAGRCTGVAYIQFVDKENAEKALLR-HKEKI 208 (304)
Q Consensus 171 ~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~-~~~~~ 208 (304)
.+++..+.+|+++-++||.+--.-..-.|+.+ .+..+
T Consensus 113 -~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 113 -GVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred -CccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 59999888899999999998877666777743 55443
No 133
>KOG4209|consensus
Probab=97.87 E-value=1.5e-05 Score=69.43 Aligned_cols=65 Identities=26% Similarity=0.322 Sum_probs=57.1
Q ss_pred cccccccccccccchhhHHhhcCCCCcceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 3 FSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 3 ~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
|.+|-++|..+|..|+.|.. |.|+.|.. |.++|||||+|.+.+.++.||.+++..|.++.|+|..
T Consensus 111 ~~~t~~~~e~hf~~Cg~i~~---------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 111 FLVTLTKIELHFESCGGINR---------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred cccccchhhheeeccCCccc---------eeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 66777889999999988874 88888884 6899999999999999999999777999999988875
No 134
>KOG0151|consensus
Probab=97.73 E-value=6.5e-05 Score=73.01 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC----CCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY----AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~----~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
+...-|||+||+..++++.|...|..||+|. +|+|+.-. ..+.+-+|||.|.+..||++|+ .++|..+.++.++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla-svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLA-SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCccc-ceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5567899999999999999999999999998 68887552 3456678999999999999999 6799999999999
Q ss_pred EEEcCC
Q psy10467 215 LVMSGA 220 (304)
Q Consensus 215 V~~~~~ 220 (304)
+-+...
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 877643
No 135
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.72 E-value=7.4e-05 Score=57.07 Aligned_cols=70 Identities=29% Similarity=0.421 Sum_probs=40.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-Hh--C---CCccCCeEEEEE
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LR--H---KEKIGHRLVTLV 216 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~--~---~~~~~gr~i~V~ 216 (304)
..|++.|++..++.++|++.|+++|.|. .|.+.. |.. .|||-|.+.++|+.|+ .+ . +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~-yVD~~~---G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVA-YVDFSR---GDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EE-EEE--T---T-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcc-eEEecC---CCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5689999999999999999999999775 444443 322 6999999999999999 33 3 356677666665
Q ss_pred Ec
Q psy10467 217 MS 218 (304)
Q Consensus 217 ~~ 218 (304)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 136
>KOG0153|consensus
Probab=97.69 E-value=2.6e-05 Score=69.89 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=46.9
Q ss_pred ccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cC-CcCCCceEEEEecCC
Q psy10467 4 SFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 4 ~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~-~~i~~r~I~V~~s~~ 79 (304)
+++|.||.+||-.||+|+ .|.++. ..|+|||+|.+.+.|+.|.++ .+ ..|+|+.|.|.++.+
T Consensus 239 ~v~e~dIrdhFyqyGeir---------si~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIR---------SIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCee---------eEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 345666666666666665 477763 457999999999999999877 44 788999999998654
No 137
>KOG0226|consensus
Probab=97.63 E-value=2.7e-05 Score=67.03 Aligned_cols=70 Identities=24% Similarity=0.253 Sum_probs=53.1
Q ss_pred ccccccccchh------hHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 8 IDILIHITYCL------LCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 8 ~dl~~~~~~~~------~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
+|.+-|+.+.| .+-.-|..|. .....+++|+ +|+++||+||-|.+..|+..||..++ +++|.|+|.+..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 44444544444 3445677774 3456666776 79999999999999999999998766 9999999988774
No 138
>KOG0533|consensus
Probab=97.60 E-value=6.8e-05 Score=65.40 Aligned_cols=64 Identities=28% Similarity=0.390 Sum_probs=50.3
Q ss_pred hhHHhhcCCC-CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCC
Q psy10467 18 LLCSQFFKPI-VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTS 81 (304)
Q Consensus 18 ~~I~~fF~~~-~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~ 81 (304)
.||+++|..+ .+..+.|-+|++|++.|.|=|.|...+||.+|++..+ .-++|+.|.+.......
T Consensus 98 ~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 98 ADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred HHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 3445555555 3345777799999999999999999999999998866 88999988877654443
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.56 E-value=0.00042 Score=49.89 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 143 CCMRLQGLPYECKKED----VEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~d----l~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..|+|.|||.+.+... |++++..+|--. +.+. .|.|+|.|.+++.|.+|. .+++..+-|+.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV--l~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV--LSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E--EE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE--EEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 3599999999988765 566677776322 2331 367999999999999999 6699999999999977
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 53
No 140
>KOG0415|consensus
Probab=97.52 E-value=0.0001 Score=66.27 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=57.0
Q ss_pred cccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCCC
Q psy10467 13 HITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 13 ~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~~ 81 (304)
=+++-.||+-.|+.|| +.++.++.|. +|-+.-||||+|++.++.++|.-+ +|..|+.|.|.|--+...+
T Consensus 249 PVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 249 PVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred CcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 3456678888888886 4889999886 799999999999999999999854 6699999999997654443
No 141
>KOG0132|consensus
Probab=97.39 E-value=0.00013 Score=71.65 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=53.9
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
+-++||.||.+.|..||+|.. |.|+ .++|||||.+....||.+||.+++ ..+.++.|+|.++...
T Consensus 430 ~k~v~e~dL~~~feefGeiqS---------i~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 430 PKNVTEQDLANLFEEFGEIQS---------IILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred cchhhHHHHHHHHHhccccee---------Eeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 345677777777777777664 7776 388999999999999999998866 8899999999987665
Q ss_pred Ccc
Q psy10467 81 SSK 83 (304)
Q Consensus 81 ~~~ 83 (304)
-.+
T Consensus 496 G~k 498 (894)
T KOG0132|consen 496 GPK 498 (894)
T ss_pred Ccc
Confidence 433
No 142
>KOG0128|consensus
Probab=97.34 E-value=2e-05 Score=77.98 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=98.2
Q ss_pred hHHhhcCCCC-cceEEEee-CCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCccccCCCCCCCCCCC
Q psy10467 19 LCSQFFKPIV-PVNILLLT-DDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGGFGGV 96 (304)
Q Consensus 19 ~I~~fF~~~~-~~~i~i~~-d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~ 96 (304)
+.+++|.+++ +..|.+.. ..+-...-++++.+....+++.|......-++++.+.|-.+...+....
T Consensus 588 ~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~----------- 656 (881)
T KOG0128|consen 588 IQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEEN----------- 656 (881)
T ss_pred hhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhc-----------
Confidence 5677888875 46677654 1222222288899999999998887777777766555544322221000
Q ss_pred CCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEe
Q psy10467 97 KSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIP 176 (304)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~ 176 (304)
. ...++......++||+||+..+.+.||...|..++.+. .+++.
T Consensus 657 --------------------------------~---kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e-~vqi~ 700 (881)
T KOG0128|consen 657 --------------------------------F---KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIE-VVQIV 700 (881)
T ss_pred --------------------------------c---CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhh-hHHHH
Confidence 0 00000113345699999999999999999999999887 36665
Q ss_pred eC-CCCCcccEEEEEecCHHHHHHHHHh-CCCccC
Q psy10467 177 HD-YAGRCTGVAYIQFVDKENAEKALLR-HKEKIG 209 (304)
Q Consensus 177 ~~-~~g~~~G~afV~f~~~~~a~~A~~~-~~~~~~ 209 (304)
.. .+++.+|.|||+|..++++.+|+.. +.+.++
T Consensus 701 ~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 701 IHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 33 6889999999999999999999977 445444
No 143
>KOG0116|consensus
Probab=97.17 E-value=0.00077 Score=63.46 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=47.4
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
|+++++++|.++|+..|.|+. ..|.+. ...++..+||||+|.+.++++.||..+-..|+++.+.|..
T Consensus 297 P~da~~~~l~~~Fk~FG~Ik~-------~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 297 PPDATPAELEEVFKQFGPIKE-------GGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred CCCCCHHHHHHHHhhcccccc-------cceEEe-ccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 555565555555555554443 334443 3445555999999999999999999998999999877765
No 144
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.16 E-value=0.0006 Score=51.41 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC-------CCCcccEEEEEecCHHHHHHHHHhCCCccCCeE-
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY-------AGRCTGVAYIQFVDKENAEKALLRHKEKIGHRL- 212 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~-------~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~- 212 (304)
....|.|-|.|.. ....|.+.|++||.|.+...+..+. .-.....-.|.|+++.+|.+||..||..|+|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456999999988 4556889999999887422111110 011234788999999999999999999998864
Q ss_pred EEEEEcC
Q psy10467 213 VTLVMSG 219 (304)
Q Consensus 213 i~V~~~~ 219 (304)
|-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566663
No 145
>KOG0115|consensus
Probab=97.11 E-value=0.0017 Score=56.28 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=62.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h-CC---CccCCeEEEEEE
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-R-HK---EKIGHRLVTLVM 217 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~-~~---~~~~gr~i~V~~ 217 (304)
..|+|.||..-++-+.+.+-|+.||++. ...+..|..+++.|.++|+|...-.|.+|+. + .+ ....+++.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e-~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIE-RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccc-hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 4499999999999999999999999998 4566667899999999999999999999983 3 22 345677777655
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 53
No 146
>KOG0112|consensus
Probab=97.11 E-value=0.0013 Score=65.92 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=98.5
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGFGG 95 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~ 95 (304)
.+|+..|..++ +..|.|..-.-+.-.-||||.|.+...+-.|..... ..|+.-.+.+.....
T Consensus 387 seiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~---------------- 450 (975)
T KOG0112|consen 387 SEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP---------------- 450 (975)
T ss_pred hhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc----------------
Confidence 34556666663 356777655556667799999999988888875443 444432222211000
Q ss_pred CCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEE
Q psy10467 96 VKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITI 175 (304)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~ 175 (304)
.......+++++|+.-+....|...|..||++. .|
T Consensus 451 ------------------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir-~I-- 485 (975)
T KOG0112|consen 451 ------------------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIR-II-- 485 (975)
T ss_pred ------------------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcce-ee--
Confidence 013445699999999999999999999999987 22
Q ss_pred eeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCC--eEEEEEEcCCc
Q psy10467 176 PHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH--RLVTLVMSGAQ 221 (304)
Q Consensus 176 ~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V~~~~~~ 221 (304)
-+ ..|.+ ||+|.|++...+..|+ .+-+..|+| +.|.|.++...
T Consensus 486 dy-~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 486 DY-RHGQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred ec-ccCCc--ceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 22 34443 9999999999999999 678888875 67888887654
No 147
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.06 E-value=0.0013 Score=58.99 Aligned_cols=80 Identities=14% Similarity=0.264 Sum_probs=58.8
Q ss_pred CCCcEEEEcCCCCCCCHHH------HHHHhhcCCCccceEEEeeCC-CCCc-ccE--EEEEecCHHHHHHHH-HhCCCcc
Q psy10467 140 VDQCCMRLQGLPYECKKED------VEKFLEGLEIVPNGITIPHDY-AGRC-TGV--AYIQFVDKENAEKAL-LRHKEKI 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~d------l~~~F~~~g~v~~~v~~~~~~-~g~~-~G~--afV~f~~~~~a~~A~-~~~~~~~ 208 (304)
....-|||-+||..+..++ -.++|.+||.|. .|.+-+.. ...+ .+- .||+|.+.|||.+|| +.||..+
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~-KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIK-KIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhcccee-EEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 4456789999998877766 368999999997 45554331 1111 122 499999999999999 5699999
Q ss_pred CCeEEEEEEcCC
Q psy10467 209 GHRLVTLVMSGA 220 (304)
Q Consensus 209 ~gr~i~V~~~~~ 220 (304)
+||.|+...-..
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999865433
No 148
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.95 E-value=0.0028 Score=50.72 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCcccc
Q psy10467 157 EDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFL 224 (304)
Q Consensus 157 ~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~~~~ 224 (304)
.+|.+.|..||.+. -|+++- +.-+|+|.+-+.|-+|+.++|..++|+.|+|.+.++.|..
T Consensus 51 ~~ll~~~~~~Gevv-LvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 51 DELLQKFAQYGEVV-LVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHHCCS-EC-EEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-------
T ss_pred HHHHHHHHhCCceE-EEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHHH
Confidence 36888899999776 455543 2579999999999999999999999999999999988764
No 149
>KOG2193|consensus
Probab=96.91 E-value=0.00017 Score=66.28 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=89.2
Q ss_pred ceeeEEEEeCCHHHHHHHHHHcC--CcCCCceEEEEecCCCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhh
Q psy10467 42 SSGEADVEFSSVDDAQRALQRHK--SNMGDRYIELYMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRA 119 (304)
Q Consensus 42 ~~G~aFV~F~s~edA~~Al~~~~--~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (304)
..|||||...++.-|.+|++.++ ..+.|+.++|..+....
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk-------------------------------------- 77 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK-------------------------------------- 77 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH--------------------------------------
Confidence 45899999999999999999877 66778888876632211
Q ss_pred cchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHH
Q psy10467 120 KRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEK 199 (304)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~ 199 (304)
...+.+-++|+|....|+-+..+...||.+++ +..+..++ -+-.--|+|.+.+.+..
T Consensus 78 --------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~-~eqvnt~~--etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 78 --------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVEN-CEQVNTDS--ETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred --------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhH-hhhhccch--HHHHHHHHHHHHHHHHH
Confidence 11233789999999999999999999999985 43332211 11234578999999999
Q ss_pred HH-HhCCCccCCeEEEEEEcCC
Q psy10467 200 AL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 200 A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
|| .+++..|....+.|.+.-.
T Consensus 135 ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 135 AIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHhhcchHhhhhhhhcccCch
Confidence 99 6799999999888866433
No 150
>KOG2314|consensus
Probab=96.87 E-value=0.0026 Score=60.74 Aligned_cols=77 Identities=13% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC-Ce
Q psy10467 140 VDQCCMRLQGLPYECKK------EDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG-HR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~------~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~-gr 211 (304)
.-..+|+|-|+|---.. .-|..+|+++|.+. .+.++.+..|..+||.|++|++..+|+.|+ ++||+.|+ ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~v-n~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIV-NMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhcccc-ceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44568999999964332 23678899999988 488888888889999999999999999999 67998775 55
Q ss_pred EEEEEE
Q psy10467 212 LVTLVM 217 (304)
Q Consensus 212 ~i~V~~ 217 (304)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666643
No 151
>KOG0129|consensus
Probab=96.69 E-value=0.0059 Score=57.84 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=49.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC--C--CCccc---EEEEEecCHHHHHHHH
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY--A--GRCTG---VAYIQFVDKENAEKAL 201 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~--~--g~~~G---~afV~f~~~~~a~~A~ 201 (304)
.-.++|||++||.+++|+.|...|..||.+. |.+.... . --++| |+|..|+++..+..-|
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~--VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK--VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE--eecCCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 4568899999999999999999999999987 7777431 1 23566 9999999988887766
No 152
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.56 E-value=0.011 Score=40.34 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC----CCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGL----EIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~----g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~ 202 (304)
..|+|+|+. +.+.+||+.+|..| ++.. |.++.|. -|-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~--IEWIdDt------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFR--IEWIDDT------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCce--EEEecCC------cEEEEECCHHHHHHHHH
Confidence 459999996 57888999999999 6554 8888763 38999999999999983
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.50 E-value=0.0062 Score=40.32 Aligned_cols=52 Identities=23% Similarity=0.483 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~ 201 (304)
+.|-|.|.+.+..+ ++..+|.++|.|. .+.+. ...-..+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~-~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIV-DIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEE-EEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 46889999977664 4666999999987 35443 12237999999999999996
No 154
>KOG4849|consensus
Probab=96.42 E-value=0.0032 Score=56.81 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC--ccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHh-CCCccCCeEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEI--VPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLR-HKEKIGHRLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~--v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~-~~~~~~gr~i~V 215 (304)
....|+||+||-+-+|.+||.+.....|. +. .+++.-+ .+|.++|||+|...+...+++.|++ -..+|.|+.-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~-dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFA-DMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHh-hhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 55678999999999999999998887763 22 2445444 6899999999999999999999955 778899987777
Q ss_pred EEcC
Q psy10467 216 VMSG 219 (304)
Q Consensus 216 ~~~~ 219 (304)
..++
T Consensus 157 ~~~N 160 (498)
T KOG4849|consen 157 LSYN 160 (498)
T ss_pred eccc
Confidence 5543
No 155
>KOG4676|consensus
Probab=96.14 E-value=0.00018 Score=65.61 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=51.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccC
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIG 209 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~ 209 (304)
++++|.+|+..+...++.+.|..+|.|. ..++. .|...-+|-|+|........|+..+|.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~-ya~~a---sk~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVS-YAHTA---SKSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhh-hhhhh---ccCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 6799999999999999999999999876 34443 333444677999999999999988887665
No 156
>KOG2202|consensus
Probab=95.85 E-value=0.0051 Score=53.41 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=50.2
Q ss_pred HHHHHHhh-cCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCccc
Q psy10467 157 EDVEKFLE-GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 157 ~dl~~~F~-~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~ 223 (304)
+||...|+ +||.|+ .+.+..+..-.-.|=+||.|...|+|++|+ .+|+..+.|++|...++.-...
T Consensus 83 Ed~f~E~~~kygEie-e~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIE-ELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhh-hhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 45555555 789988 355554433456788999999999999999 6799999999999887755443
No 157
>KOG4676|consensus
Probab=95.82 E-value=0.016 Score=53.26 Aligned_cols=76 Identities=11% Similarity=0.206 Sum_probs=61.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC----CCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEE
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY----AGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVM 217 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~----~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~ 217 (304)
...|.|.||..++|.+++..+|..+|.|. .+.|.-.. -.-..-.|||.|.+...+..|-.|-++.+-++.|-|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~-elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIP-ELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccc-cccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 34799999999999999999999999998 47765431 12234579999999999999998877777778877755
Q ss_pred c
Q psy10467 218 S 218 (304)
Q Consensus 218 ~ 218 (304)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 4
No 158
>KOG4661|consensus
Probab=95.78 E-value=0.018 Score=55.28 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=56.1
Q ss_pred cccchhhHHhhcCCCC-cceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCC
Q psy10467 13 HITYCLLCSQFFKPIV-PVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTS 81 (304)
Q Consensus 13 ~~~~~~~I~~fF~~~~-~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~ 81 (304)
-.+-..+|+.+|+.|+ ++...++.+.. =-.+.|+||++.+.++|.+.|..+. +.|.||-|.|.++....
T Consensus 415 stTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 415 STTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred cchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence 3455778999999995 68888887652 2367899999999999999998755 99999999998866554
No 159
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.69 E-value=0.022 Score=42.70 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=44.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCC----CceEEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMG----DRYIEL 74 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~----~r~I~V 74 (304)
+|=..|.++|+..+.+. |.+ .-+=+.|+.|. ++.+.|||||-|.+++.|.+-.+. ++.... .+..+|
T Consensus 9 IPn~~t~~~L~~~l~~~------~~g-~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 9 IPNKYTQEMLIQILDEH------FKG-KYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred CCCCCCHHHHHHHHHHh------ccC-cceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 35556666666655442 221 12347777776 678999999999999999987765 444443 334555
Q ss_pred Ee
Q psy10467 75 YM 76 (304)
Q Consensus 75 ~~ 76 (304)
..
T Consensus 82 ~y 83 (97)
T PF04059_consen 82 SY 83 (97)
T ss_pred eh
Confidence 55
No 160
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.51 E-value=0.06 Score=38.86 Aligned_cols=55 Identities=15% Similarity=0.320 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~ 203 (304)
...+..+|. .|.+-...||.++|+.||.|. |-++.| | -|||...+.+.|..|+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~--VsWi~d-T-----SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY--VSWIND-T-----SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE--EEEECT-T-----EEEEEECCCHHHHHHHHH
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE--EEEEcC-C-----cEEEEeecHHHHHHHHHH
Confidence 334556666 999999999999999999986 888764 2 599999999999999844
No 161
>KOG1855|consensus
Probab=95.50 E-value=0.014 Score=54.22 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC------CCCCc--------ccEEEEEecCHHHHHHHHHhCC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD------YAGRC--------TGVAYIQFVDKENAEKALLRHK 205 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~------~~g~~--------~G~afV~f~~~~~a~~A~~~~~ 205 (304)
-..++|.+-|||.+-.-+.|.++|+.+|.|. .|+|+.- -.|.+ +-+|+|+|+..+.|.+|.++.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~Ik-sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIK-SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhccccee-eeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3679999999999988899999999999998 6888754 12322 4579999999999999997643
No 162
>KOG4210|consensus
Probab=95.50 E-value=0.0037 Score=56.32 Aligned_cols=70 Identities=29% Similarity=0.336 Sum_probs=57.4
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+|++++++|..+|..|++|.. |++..++ .|...|||||.|.+..++..||......++++++.+....+.
T Consensus 194 ~f~~~~d~~~~~~~~~~~i~~---------~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 194 DFSLTRDDLKEHFVSSGEITS---------VRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccccchHHHhhhccCcCccee---------eccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 578888898888888887774 7887665 689999999999999999999987348889998888774443
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.39 E-value=0.0089 Score=45.08 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=41.6
Q ss_pred ccccccccchhhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceE-EEEec
Q psy10467 8 IDILIHITYCLLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYI-ELYME 77 (304)
Q Consensus 8 ~dl~~~~~~~~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I-~V~~s 77 (304)
..|+.+|+.||+|.+.|..+.- ..+.-..-+.| ...--|+|+++.+|++||.+++..++|..| -|.++
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~--~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG--GNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E-CC--TTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCCCC--CCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEc
Confidence 3567778888877775533210 01100011122 347899999999999999999999998754 45553
No 164
>KOG1996|consensus
Probab=95.24 E-value=0.049 Score=48.28 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEEcCC--CCCCCH---HHHHHHhhcCCCccceEEEeeCCCC--CcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 144 CMRLQGL--PYECKK---EDVEKFLEGLEIVPNGITIPHDYAG--RCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 144 ~v~v~nL--p~~~t~---~dl~~~F~~~g~v~~~v~~~~~~~g--~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
.|.++|+ +-.+++ .++++..++||.|.+ |.|...+.- .-.---||+|+..++|.+|+ .+||.+|+||.+..
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~-viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGN-VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceee-EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 3555554 333443 468888999999984 555443211 11224799999999999999 77999999998876
Q ss_pred EE
Q psy10467 216 VM 217 (304)
Q Consensus 216 ~~ 217 (304)
-.
T Consensus 362 ~F 363 (378)
T KOG1996|consen 362 CF 363 (378)
T ss_pred ee
Confidence 43
No 165
>KOG3152|consensus
Probab=95.06 E-value=0.03 Score=48.71 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=57.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CC--------CCcc----cEEEEEecCHHHHHHHH-HhCCC
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YA--------GRCT----GVAYIQFVDKENAEKAL-LRHKE 206 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~--------g~~~----G~afV~f~~~~~a~~A~-~~~~~ 206 (304)
....||++++|......-|+++|+.||.|- .|.+-.. .+ |... -.|.|+|.+...|.... .+|+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVG-RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVG-RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccc-eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 557899999999999999999999999997 5666433 22 2222 25789999999999987 66999
Q ss_pred ccCCeE
Q psy10467 207 KIGHRL 212 (304)
Q Consensus 207 ~~~gr~ 212 (304)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999874
No 166
>KOG4660|consensus
Probab=95.06 E-value=0.0089 Score=57.14 Aligned_cols=59 Identities=24% Similarity=0.147 Sum_probs=49.1
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIE 73 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~ 73 (304)
|-++++++|+..|..+|+|++ |+... ..+|..||+|-+..+|++||+.++ ..|.|+.|.
T Consensus 84 ~~~Vsn~~L~~~f~~yGeir~---------ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 84 PRSVSNDTLLRIFGAYGEIRE---------IRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCcCCHHHHHHHHHhhcchhh---------hhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 557888899999998888886 66543 356799999999999999999877 888888776
No 167
>KOG1995|consensus
Probab=94.98 E-value=0.012 Score=53.51 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
||=++++.+|..||.+|+.|..==.. ..-.|.|-+|+ +++++|-|.|.|.+.-.|+.|+.... +.+.+..|+|..+.
T Consensus 74 ~~d~~~~~~~~~~f~qcg~ikrnK~t-~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 74 CPDSVCENDNADFFLQCGVIKRNKRT-GKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAE 152 (351)
T ss_pred cCccchHHHHHHHHhhcceeccCCCC-CCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhh
Confidence 45567888888888888877641111 11235555555 68999999999999999999998855 77777999998865
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 153 ~r~ 155 (351)
T KOG1995|consen 153 RRT 155 (351)
T ss_pred hcc
Confidence 544
No 168
>KOG2314|consensus
Probab=94.69 E-value=0.057 Score=51.92 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=44.0
Q ss_pred HHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCc-eEEEE
Q psy10467 20 CSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDR-YIELY 75 (304)
Q Consensus 20 I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r-~I~V~ 75 (304)
|...|+.++ +++..++.+..|..+||.|++|++..+|+.|++..+ ..|+-+ +..|.
T Consensus 81 l~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 81 LTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 556778885 477888888888899999999999999999998866 555533 44443
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.55 E-value=0.014 Score=38.62 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=24.6
Q ss_pred HHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHH
Q psy10467 20 CSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRAL 60 (304)
Q Consensus 20 I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al 60 (304)
|..+|..+|. .++.+. ...-.+||+|.+..+|++||
T Consensus 17 vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 17 VLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 4455555542 345553 23447999999999999996
No 170
>KOG2193|consensus
Probab=94.35 E-value=0.053 Score=50.39 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=57.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCC-CccCCeEEEEEEcCCc
Q psy10467 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHK-EKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 144 ~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~-~~~~gr~i~V~~~~~~ 221 (304)
.+|++||...++..||..+|.......++-.++. .|||||.+.+..-|.+|++ +++ .++.|..++|..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 5899999999999999999998643332223332 4699999999999999994 565 6899999999877655
Q ss_pred c
Q psy10467 222 W 222 (304)
Q Consensus 222 ~ 222 (304)
.
T Consensus 77 k 77 (584)
T KOG2193|consen 77 K 77 (584)
T ss_pred H
Confidence 3
No 171
>KOG2202|consensus
Probab=93.94 E-value=0.018 Score=50.05 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=33.1
Q ss_pred CceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 41 RSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 41 r~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
.-.|-+||.|..+|+|++|+..+| ..+.|++|....+.-
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 467899999999999999998866 999999987766433
No 172
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=93.71 E-value=0.14 Score=37.05 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 43 SGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 43 ~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
.|.|+|.|.+++.|++|++.++ +.+-|+.|.|..
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4789999999999999998866 888888898876
No 173
>KOG4285|consensus
Probab=93.71 E-value=0.31 Score=43.53 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCe-EEEEEEcC
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR-LVTLVMSG 219 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr-~i~V~~~~ 219 (304)
....|-|-|.|..... -|..+|+.+|.|. ..+...+| -+-+|-|.+.-+|.+||.+||..|+|- .|-|..|.
T Consensus 196 ~D~WVTVfGFppg~~s-~vL~~F~~cG~Vv---khv~~~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQVS-IVLNLFSRCGEVV---KHVTPSNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ccceEEEeccCccchh-HHHHHHHhhCeee---eeecCCCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 3677889999987654 4788999999886 23322344 378999999999999999999999876 57888887
Q ss_pred CccccCCC
Q psy10467 220 AQWFLSPP 227 (304)
Q Consensus 220 ~~~~~~~~ 227 (304)
.+.+....
T Consensus 269 Dksvi~~s 276 (350)
T KOG4285|consen 269 DKSVINGS 276 (350)
T ss_pred CHHHhccc
Confidence 77554433
No 174
>KOG2135|consensus
Probab=93.64 E-value=0.041 Score=51.79 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCC-CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYEC-KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~-t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
.+.|-+.-.|+.. |.++|..+|.+||.|.+ |.+-+. .--|.|+|.+..+|-.|-.-.+..|++|.|+|++-++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n-~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIEN-IQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCcccc-ccccCc-----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3445555556664 66899999999999984 666443 2249999999999999988899999999999999877
Q ss_pred c
Q psy10467 221 Q 221 (304)
Q Consensus 221 ~ 221 (304)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.23 E-value=0.064 Score=39.33 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=24.2
Q ss_pred EEEEeCCHHHHHHHHHHcC--CcCCCceEEEEe
Q psy10467 46 ADVEFSSVDDAQRALQRHK--SNMGDRYIELYM 76 (304)
Q Consensus 46 aFV~F~s~edA~~Al~~~~--~~i~~r~I~V~~ 76 (304)
|.|+|..++-|++-+++-. -.+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 7899999999999887644 667777666554
No 176
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.23 E-value=0.63 Score=32.22 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEE
Q psy10467 153 ECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTL 215 (304)
Q Consensus 153 ~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V 215 (304)
.++-+|++.-+..|+-. .|+.|.+| =||.|.+..+|+++.. .|+..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~----~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD----RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc----eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999753 45567777 6999999999999995 5888776665543
No 177
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=92.19 E-value=0.38 Score=36.61 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=30.6
Q ss_pred hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCC------cCCCceEEEEe
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKS------NMGDRYIELYM 76 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~------~i~~r~I~V~~ 76 (304)
-.+|++.|+.++ .|..+.-..|.. .|||-|.++++|+.|+..... .|.+..+.+..
T Consensus 15 re~iK~~f~~~g--~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 15 REDIKEAFSQFG--EVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp HHHHHHHT-SS----EEEEE--TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred HHHHHHHHHhcC--CcceEEecCCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 567888888876 344443334544 689999999999999987552 35555444443
No 178
>KOG2591|consensus
Probab=92.16 E-value=0.27 Score=47.32 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=51.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC--CccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh---CCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLE--IVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR---HKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g--~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~---~~~~~~gr~i~ 214 (304)
...+.|.++-||.++..++|+.+|..-. .+. .+.+..+.+ =||+|++..||+.|.+. .-.+|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~i-scefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVI-SCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCce-eeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4567788899999999999999998732 222 244443322 49999999999999943 33678888875
Q ss_pred E
Q psy10467 215 L 215 (304)
Q Consensus 215 V 215 (304)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 4
No 179
>KOG4849|consensus
Probab=91.33 E-value=0.16 Score=46.15 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=49.4
Q ss_pred CcccccccccccccchhhHHhhcCCCC---cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCce
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIV---PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRY 71 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~---~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~ 71 (304)
+|-||.+.|+=|-+++. |.+.....+ ..++++..+. ||.++|||+|...++..+.+-|+.+- +.|.|..
T Consensus 80 k~~~YvGNL~W~TTD~D-L~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDAD-LLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHH-HHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 45688888875555544 444444333 3556666554 79999999999999999999998877 7777763
No 180
>KOG4285|consensus
Probab=91.21 E-value=0.15 Score=45.45 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=37.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHcCCcCCCc-eEEEEecCCCCcccc
Q psy10467 42 SSGEADVEFSSVDDAQRALQRHKSNMGDR-YIELYMEEGTSSKEA 85 (304)
Q Consensus 42 ~~G~aFV~F~s~edA~~Al~~~~~~i~~r-~I~V~~s~~~~~~~~ 85 (304)
+--+-+|.|.+.-+|++||.+++..|+|. -|-|.+|.++.....
T Consensus 231 ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksvi~~ 275 (350)
T KOG4285|consen 231 NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSVING 275 (350)
T ss_pred CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHHhcc
Confidence 33578999999999999999999999988 689999888776543
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.76 E-value=0.45 Score=32.45 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=29.9
Q ss_pred hhHHhhcCCC----CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH
Q psy10467 18 LLCSQFFKPI----VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR 62 (304)
Q Consensus 18 ~~I~~fF~~~----~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~ 62 (304)
.+|..||..+ ++..|..+.|. -|-|.|.+++.|.+||..
T Consensus 19 ~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 19 DDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVA 61 (62)
T ss_pred HHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHc
Confidence 4555566555 67788888664 389999999999999964
No 182
>KOG0112|consensus
Probab=90.49 E-value=0.098 Score=52.95 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+||++||+..+++.+|+..|..+|.|. .|.|-.-.-+.---||||.|.+.+.+-.|+ .+.+..|..-.+.+-+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve-~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVE-EVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhcccc-ccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 5678999999999999999999999999998 577755434444558999999999999998 6766666544444433
No 183
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=89.28 E-value=0.64 Score=36.03 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=35.5
Q ss_pred cEEEEcCCCCCC---------CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecC-HHHHHHHHHhC
Q psy10467 143 CCMRLQGLPYEC---------KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVD-KENAEKALLRH 204 (304)
Q Consensus 143 ~~v~v~nLp~~~---------t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~-~~~a~~A~~~~ 204 (304)
.++.|-|++.+. +.+.|.+.|..|.++. |+.+.+..| ++|+++|+|.+ ..-...|+.++
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k--v~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK--VKPLYGKQG-HTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE--EEEEEETTE-EEEEEEEE--SSHHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce--eEECcCCCC-CcEEEEEEECCChHHHHHHHHHH
Confidence 356677775543 4578999999999986 888877665 78999999995 45566676553
No 184
>KOG2416|consensus
Probab=88.63 E-value=0.52 Score=45.84 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCcc---CCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEG-LEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKI---GHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~-~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~---~gr~i~ 214 (304)
..+..|+|.||-.-.|.-+|++++.. .|.|. .. ++. +.+--|||.|.+.++|.... .||+... +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Ve-e~-WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVE-EF-WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchH-HH-HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 56789999999888999999999994 45555 34 332 34556999999999999988 7888654 678888
Q ss_pred EEEcCCcccc
Q psy10467 215 LVMSGAQWFL 224 (304)
Q Consensus 215 V~~~~~~~~~ 224 (304)
|.+....++.
T Consensus 516 adf~~~deld 525 (718)
T KOG2416|consen 516 ADFVRADELD 525 (718)
T ss_pred eeecchhHHH
Confidence 8777665443
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.56 E-value=1.5 Score=36.98 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=42.4
Q ss_pred CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--CCccCCeEEEEEEcCCc
Q psy10467 155 KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RH--KEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 155 t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~--~~~~~gr~i~V~~~~~~ 221 (304)
..+.|+++|..++.+. .+..+ ++-+-..|.|.+.++|..|.. ++ +..+.|..++|+.+...
T Consensus 8 ~~~~l~~l~~~~~~~~-~~~~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPV-QFSPL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS--EEEEE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCce-EEEEc-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999999876 35555 345569999999999999994 57 88999999999988544
No 186
>KOG2068|consensus
Probab=87.46 E-value=0.21 Score=45.22 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCCCCCHHHH---HHHhhcCCCccceEEEeeCCC--CC--cccEEEEEecCHHHHHHHH-HhCCCccCCeE
Q psy10467 141 DQCCMRLQGLPYECKKEDV---EKFLEGLEIVPNGITIPHDYA--GR--CTGVAYIQFVDKENAEKAL-LRHKEKIGHRL 212 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl---~~~F~~~g~v~~~v~~~~~~~--g~--~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~ 212 (304)
...-+||-+|+.....+++ .+.|.+||.+. .|.+-.+.. .. ..--++|+|+..|+|..|| ..++..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~-ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKIN-KIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccce-EEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3456888889887655554 35788889887 466655431 11 1113799999999999999 56999999998
Q ss_pred EEEEEcC
Q psy10467 213 VTLVMSG 219 (304)
Q Consensus 213 i~V~~~~ 219 (304)
++.....
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 7665443
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.40 E-value=1.7 Score=31.55 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.6
Q ss_pred hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
..||.++|+++|-..|..+.|. -|||.....+.|..|+....
T Consensus 22 ~~DI~qlFspfG~I~VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 22 TSDIYQLFSPFGQIYVSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHHCCCCCCEEEEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred hhhHHHHhccCCcEEEEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 3589999999998888887553 59999999999999987765
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.20 E-value=0.83 Score=38.19 Aligned_cols=69 Identities=13% Similarity=-0.020 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCcc--ceEEEeeC--CC-CCcccEEEEEecCHHHHHHHH-HhCCCcc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEG-LEIVP--NGITIPHD--YA-GRCTGVAYIQFVDKENAEKAL-LRHKEKI 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~-~g~v~--~~v~~~~~--~~-g~~~G~afV~f~~~~~a~~A~-~~~~~~~ 208 (304)
....+|.|++||.+.|++++.+.+.. ++.-. ..+.-... .. -..-.-|||.|.+.+++..-. ..+|+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 34568999999999999999887666 44331 01221122 11 112346999999999988777 4588654
No 189
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.94 E-value=1.6 Score=39.77 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=39.0
Q ss_pred HhhcCCCCc-ceEEEeeCCCC--CceeeE--EEEeCCHHHHHHHHHH-cCCcCCCceEEEEe
Q psy10467 21 SQFFKPIVP-VNILLLTDDAG--RSSGEA--DVEFSSVDDAQRALQR-HKSNMGDRYIELYM 76 (304)
Q Consensus 21 ~~fF~~~~~-~~i~i~~d~~G--r~~G~a--FV~F~s~edA~~Al~~-~~~~i~~r~I~V~~ 76 (304)
.+||.+||. ..|.+-+.... -..+.+ ||+|.+.|||.++|.. ++.+++||-|+...
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeec
Confidence 478988874 44443322211 122334 9999999999999987 55999999887765
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.90 E-value=4.6 Score=32.36 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=49.1
Q ss_pred CCCcEEEEcCCCCCC----CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEE
Q psy10467 140 VDQCCMRLQGLPYEC----KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~----t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V 215 (304)
....+|.|+=|..+. +-..+....+.||+|. +|.+. |+ --|.|.|.+..+|-+|+.--....-|..+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~-SVT~c----Gr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQ-SVTLC----GR--QSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcc-eeeec----CC--ceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 556778887555543 3345666678899998 57654 22 2599999999999999954333556666666
Q ss_pred EE
Q psy10467 216 VM 217 (304)
Q Consensus 216 ~~ 217 (304)
.+
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 55
No 191
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=85.52 E-value=1.6 Score=35.06 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=41.5
Q ss_pred hhhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 17 CLLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 17 ~~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
+..|.+.|+.+|. .=|+++. +.-.|+|.+-+.|-+||.+++..++|+.|.|..
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE
T ss_pred HHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEe
Confidence 4466677777873 3344431 467999999999999999999999999999987
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.30 E-value=12 Score=28.62 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH 210 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g 210 (304)
...+.+-..|+-++..+|..+.+.+-.....++|++|.+. .+=.+.+.|.+.++|..=. ..||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445556666667777777666666433335777776432 4557899999999999988 569987643
No 193
>KOG2135|consensus
Probab=79.85 E-value=0.66 Score=43.95 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=46.4
Q ss_pred ccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 6 YVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 6 te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
|-.+|..+|.+.|.|.. |.+-+ +.--|.|+|.+..+|-+|-.-+.-.|++|.|+|++..+
T Consensus 386 t~a~ln~hfA~fG~i~n---------~qv~~-----~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIEN---------IQVDY-----SSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCcccc---------ccccC-----chhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 34567777777776664 66632 23468999999999988888888999999999998554
No 194
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.77 E-value=10 Score=26.54 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHhhcCCCcc-c---eEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 151 PYECKKEDVEKFLEGLEIVP-N---GITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 151 p~~~t~~dl~~~F~~~g~v~-~---~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
-..++..+|..++...+.+. + .|.+..+ |+||+-.. +.|..++ .+++..+.|+.|.|..|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34678889999998764332 1 2444322 79998875 4677788 66999999999999864
No 195
>KOG1996|consensus
Probab=76.78 E-value=2.6 Score=37.73 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.9
Q ss_pred EEEEeCCHHHHHHHHHHcC-CcCCCceEEEE
Q psy10467 46 ADVEFSSVDDAQRALQRHK-SNMGDRYIELY 75 (304)
Q Consensus 46 aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~ 75 (304)
-||+|...++|.+|+-.+| .++|||.|..+
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 6999999999999997766 99999987543
No 196
>KOG4574|consensus
Probab=74.35 E-value=3.3 Score=42.19 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCc--cCCeEEEEEE
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEK--IGHRLVTLVM 217 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~--~~gr~i~V~~ 217 (304)
...+..+-|.+-..+..-|..+|.+||.|. .++.+++.+ .|.|+|.+.+.|..|+ .+.|.. +-|-+.+|..
T Consensus 297 lqp~~~~~nn~v~~tSssL~~l~s~yg~v~-s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 297 LQPKQSLENNAVNLTSSSLATLCSDYGSVA-SAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred CcchhhhhcccccchHHHHHHHHHhhcchh-hheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 345577778888899999999999999998 477776644 5999999999999999 777754 4688899999
Q ss_pred cCCccccCCC
Q psy10467 218 SGAQWFLSPP 227 (304)
Q Consensus 218 ~~~~~~~~~~ 227 (304)
++...+..++
T Consensus 371 ak~~~~~ep~ 380 (1007)
T KOG4574|consen 371 AKTLPMYEPP 380 (1007)
T ss_pred ccccccccCC
Confidence 9888777666
No 197
>KOG0804|consensus
Probab=72.82 E-value=13 Score=35.41 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=56.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH 210 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g 210 (304)
..+..|+|-.+|...|..||..|...+......+++++|... .+=...|.|.+.++|..-. ..||..++.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 337889999999999999999999988644446899986433 3346889999999999988 669987754
No 198
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.77 E-value=3.7 Score=31.80 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=32.7
Q ss_pred chhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCC-HHHHHHHHHHcCC
Q psy10467 16 YCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSS-VDDAQRALQRHKS 65 (304)
Q Consensus 16 ~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s-~edA~~Al~~~~~ 65 (304)
+...|.+.|+.|.+..|+.+.++.| ++|++.|+|.+ -..-..|+...+.
T Consensus 30 ~~~~l~~~l~~f~p~kv~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~~l~~~ 79 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKVKPLYGKQG-HTGFAIVEFNKDWSGFKNAMRLEKH 79 (116)
T ss_dssp -SHHHHHHHHH---SEEEEEEETTE-EEEEEEEE--SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCceeEECcCCCC-CcEEEEEEECCChHHHHHHHHHHHH
Confidence 4467778888887777888888876 88999999965 4556668776663
No 199
>KOG2253|consensus
Probab=66.70 E-value=4.4 Score=40.14 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
....+|||+|+.+.+..+-++.+...+|-|.. ...+. |||.+|..+.-...|+. ++...++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s-~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPS-WKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchh-hhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 55678999999999999999999999998762 22221 99999999999999994 477788888766543
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=64.38 E-value=6.3 Score=27.68 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 30 VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 30 ~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
..|.|. .-|+||+-... .|+.+|..++ ..+.|+.|.|..
T Consensus 34 G~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 34 GRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 456663 23899998765 7888887766 899999988865
No 201
>KOG2591|consensus
Probab=63.67 E-value=8.4 Score=37.56 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=34.7
Q ss_pred hhhHHhhcCCC---CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC---CcCCCceE
Q psy10467 17 CLLCSQFFKPI---VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK---SNMGDRYI 72 (304)
Q Consensus 17 ~~~I~~fF~~~---~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~---~~i~~r~I 72 (304)
.++|+-+|++- .+.++.+-.+ .+ =||+|+++.||+.|.+.+. +.+.|++|
T Consensus 189 ~e~Vk~lf~~encPk~iscefa~N-----~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 189 IEVVKALFKGENCPKVISCEFAHN-----DN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred HHHHHHHhccCCCCCceeeeeeec-----Cc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 34566667652 3456666432 22 4999999999999987755 67778866
No 202
>KOG4410|consensus
Probab=63.35 E-value=12 Score=33.38 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=37.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCH
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDK 194 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~ 194 (304)
..-|+|+|||.++.-.||+..+.+.+.+. ..|. +.| +.|-||..|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p--m~is--wkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP--MSIS--WKG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc--eeEe--eec-CCcceeEecCCc
Confidence 34599999999999999999999887654 3332 444 667899999863
No 203
>KOG4483|consensus
Probab=62.18 E-value=17 Score=34.04 Aligned_cols=58 Identities=24% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~ 203 (304)
.-.+.|-|.|+|.....+||...|..|+.---.|.++.| + .||-.|.+...|..||-+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-t-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-T-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-c-----eeEEeecchHHHHHHhhc
Confidence 456789999999999999999999999654324667654 3 499999999999999966
No 204
>KOG1855|consensus
Probab=61.91 E-value=3.4 Score=38.90 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=39.2
Q ss_pred hhhHHhhcCCCC-cceEEEeeC---C-C--CC--------ceeeEEEEeCCHHHHHHHHHHcCCcCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTD---D-A--GR--------SSGEADVEFSSVDDAQRALQRHKSNMG 68 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d---~-~--Gr--------~~G~aFV~F~s~edA~~Al~~~~~~i~ 68 (304)
+..|.++|..+| +..|+|++- + + |. .+-+|+|+|...+.|.+|.+.++..-.
T Consensus 245 ~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 245 YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQN 311 (484)
T ss_pred HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhh
Confidence 477888888886 477988855 2 2 22 256899999999999999999874433
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=60.75 E-value=38 Score=25.91 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=39.8
Q ss_pred cccccchhhHHhhcCCC--CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCC
Q psy10467 11 LIHITYCLLCSQFFKPI--VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMG 68 (304)
Q Consensus 11 ~~~~~~~~~I~~fF~~~--~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~ 68 (304)
..+++.+.+|..|.+.+ .+..++|++|... ++=-+.|+|.+.++|+.=....| +..+
T Consensus 21 p~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 21 PPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 45667777777666665 2467888876543 55568999999999999776644 5443
No 206
>KOG0151|consensus
Probab=60.38 E-value=11 Score=37.96 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=47.4
Q ss_pred ccccccccccchhhHHhhcCCCCc-ceEEEeeCCC----CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 6 YVIDILIHITYCLLCSQFFKPIVP-VNILLLTDDA----GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 6 te~dl~~~~~~~~~I~~fF~~~~~-~~i~i~~d~~----Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
|...|-.-+.+. .+..-|..|++ ..|.|+.-.+ -+.+-||||-|-+..||++||+.++ ..+.+..+++-++
T Consensus 178 yv~Nlnpsv~E~-~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 178 YVGNLNPSVDEN-FLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred eeecCCccccHH-HHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 444444444443 33344566653 6777774322 3566799999999999999998877 7777777766654
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=53.63 E-value=58 Score=22.44 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=29.3
Q ss_pred hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCC
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMG 68 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~ 68 (304)
..+++.-+..+.-..|. .|++ || ||.|.+.++|++.....+ ..+.
T Consensus 14 v~d~K~~Lr~y~~~~I~--~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 14 VEDFKKRLRKYRWDRIR--DDRT----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred HHHHHHHHhcCCcceEE--ecCC----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 34455555555555554 4544 55 999999999999987755 4443
No 208
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=49.83 E-value=40 Score=24.63 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=41.9
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
+|.+..+...+|..=+..|.+.|.......+.|. +|..| =.|++.+.++.+.|+...+
T Consensus 18 Rf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeG-----DlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 18 RFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEG-----DLVAFSSDEELVMALGSLN 76 (87)
T ss_pred EEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCC-----CEEeecCHHHHHHHHHcCC
Confidence 3455555555555557778888877765667776 57777 3699999999999998765
No 209
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.22 E-value=29 Score=23.59 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=12.8
Q ss_pred HHHHHHhhcCCCcc
Q psy10467 157 EDVEKFLEGLEIVP 170 (304)
Q Consensus 157 ~dl~~~F~~~g~v~ 170 (304)
++|+++|+.+|.|.
T Consensus 9 ~~iR~~fs~lG~I~ 22 (62)
T PF15513_consen 9 AEIRQFFSQLGEIA 22 (62)
T ss_pred HHHHHHHHhcCcEE
Confidence 58999999999986
No 210
>KOG0115|consensus
Probab=46.37 E-value=19 Score=31.80 Aligned_cols=59 Identities=27% Similarity=0.474 Sum_probs=42.9
Q ss_pred cccccccccccchhhHHhhcCCCCcc-eEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 5 FYVIDILIHITYCLLCSQFFKPIVPV-NILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 5 ~te~dl~~~~~~~~~I~~fF~~~~~~-~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
+|+-+|..+.+ ..++++-|+.++++ ...++.|..|+..|.++|.|...-.|.+|+...+
T Consensus 34 l~V~nl~~~~s-ndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 34 LYVVNLMQGAS-NDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred EEEEecchhhh-hHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 34445554444 46777788888653 3334457779999999999999999999998764
No 211
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=46.01 E-value=59 Score=26.23 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=38.3
Q ss_pred hhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 18 LLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 18 ~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
..|.+..+-||+ ..|.+. |+. -|.|.|.+..+|.+|+........|.-+....
T Consensus 105 ~sV~~~Ls~fGpI~SVT~c----Grq--savVvF~d~~SAC~Av~Af~s~~pgtm~qCsW 158 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLC----GRQ--SAVVVFKDITSACKAVSAFQSRAPGTMFQCSW 158 (166)
T ss_pred HHHHHHHHhcCCcceeeec----CCc--eEEEEehhhHHHHHHHHhhcCCCCCceEEeec
Confidence 345555566764 667665 443 59999999999999999888777777666554
No 212
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.57 E-value=28 Score=31.71 Aligned_cols=30 Identities=33% Similarity=0.120 Sum_probs=21.2
Q ss_pred EEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 46 ADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 46 aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
|||+|+++.+|+.|++....... +.+.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~ 30 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSP 30 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEee
Confidence 79999999999999986443333 2335544
No 213
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.41 E-value=39 Score=24.52 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=29.2
Q ss_pred hHHhhcC---CCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 19 LCSQFFK---PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 19 ~I~~fF~---~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
+|++.++ +..+.+|..+.-+.|.. -|||.+...++|.....+.+
T Consensus 36 eIK~AvE~lf~VkV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 36 DIKRAVEELFDVKVEKVNTLITPKGEK--KAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred HHHHHHHHHhCCceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHHhhc
Confidence 4444444 34567777776554433 59999999999988766544
No 214
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=42.94 E-value=1.3e+02 Score=21.82 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=37.5
Q ss_pred hhhHHhhcCCCCcceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 17 CLLCSQFFKPIVPVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
|.++++.|.-.......|. .|..|-+ |.|.|.++.+.|+.... ..-.+=.|.|++
T Consensus 26 ~~~v~~~c~~~~~q~ft~kw~DEEGDp-----~tiSS~~EL~EA~rl~~~n~~~~l~ihvfp 82 (83)
T cd06404 26 CNEVRDMCRFHNDQPFTLKWIDEEGDP-----CTISSQMELEEAFRLYELNKDSELNIHVFP 82 (83)
T ss_pred HHHHHHHhCCCCCCcEEEEEECCCCCc-----eeecCHHHHHHHHHHHHhcCcccEEEEecC
Confidence 6677887776554556665 5777744 88999999999998755 222233566654
No 215
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=42.55 E-value=28 Score=26.46 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=21.5
Q ss_pred hhcCCCC--cc-eEEEeeCCCCCceeeEEEEeCCHH
Q psy10467 22 QFFKPIV--PV-NILLLTDDAGRSSGEADVEFSSVD 54 (304)
Q Consensus 22 ~fF~~~~--~~-~i~i~~d~~Gr~~G~aFV~F~s~e 54 (304)
+||.++. +. +|+|.+.++| ..|.|...|+++.
T Consensus 2 QF~~Gi~E~~~pdVrLtRsrdg-~~g~a~f~F~~p~ 36 (108)
T PF03912_consen 2 QFIKGIDEEVVPDVRLTRSRDG-GTGTATFYFENPK 36 (108)
T ss_dssp ESSSS-------EEEEEE-TTS--SEEEEEEEES-G
T ss_pred ccccCCCCccCCCeEEEEccCC-CceEEEEEECCCc
Confidence 5788773 34 8999998888 6799999999883
No 216
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=40.20 E-value=50 Score=25.14 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=26.8
Q ss_pred hhcCCCC---cceEEEeeCCCCCceeeEEEEeCCHHH
Q psy10467 22 QFFKPIV---PVNILLLTDDAGRSSGEADVEFSSVDD 55 (304)
Q Consensus 22 ~fF~~~~---~~~i~i~~d~~Gr~~G~aFV~F~s~ed 55 (304)
+||.++. +-+|+|.+.++| .+|.|...|+.+.-
T Consensus 2 QF~~Gi~E~~ip~VrLtRsrdg-~~g~a~f~F~~p~a 37 (109)
T TIGR03047 2 QFFRGIDEEVIPDVRLTRSRDG-GTGTALFRFENPKA 37 (109)
T ss_pred ccccCCCCCcCCceEEEEccCC-CceEEEEEECCchh
Confidence 5788773 468999998888 67999999999843
No 217
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=39.74 E-value=48 Score=25.43 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.1
Q ss_pred hhcCCCC---cceEEEeeCCCCCceeeEEEEeCCHHH
Q psy10467 22 QFFKPIV---PVNILLLTDDAGRSSGEADVEFSSVDD 55 (304)
Q Consensus 22 ~fF~~~~---~~~i~i~~d~~Gr~~G~aFV~F~s~ed 55 (304)
+||.++. +-+|+|.+.++| .+|.|...|+++.-
T Consensus 5 QF~~Gi~E~~ip~VrLtRsrdg-~~g~a~f~F~~p~a 40 (113)
T CHL00128 5 QFIKGIDEEVIPDVRLTRSRDG-STGTATFRFKNPNI 40 (113)
T ss_pred EEecCCCCCcCCceEEEEccCC-CceEEEEEECCchh
Confidence 6788773 468999998888 77999999999944
No 218
>PHA00451 protein kinase
Probab=39.62 E-value=14 Score=33.07 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=22.5
Q ss_pred cccccchhhHHhhcCCCC---cceEEEeeCCCCCc
Q psy10467 11 LIHITYCLLCSQFFKPIV---PVNILLLTDDAGRS 42 (304)
Q Consensus 11 ~~~~~~~~~I~~fF~~~~---~~~i~i~~d~~Gr~ 42 (304)
..|+.+|..|+.||.++- --+=.|+.+++|.+
T Consensus 174 ~~FIETCk~IRkFF~GIASFDmHSGNiMf~~~g~p 208 (362)
T PHA00451 174 QEFIETCKMIRKFFYGIASFDMHSGNIMFDQDGVP 208 (362)
T ss_pred hhHHHHHHHHHHHHhhhhcccccCCceeeCCCCCe
Confidence 478999999999999762 23344556666643
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=38.01 E-value=52 Score=27.66 Aligned_cols=56 Identities=25% Similarity=0.340 Sum_probs=36.6
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC---CcCCCceEEEEecC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK---SNMGDRYIELYMEE 78 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~---~~i~~r~I~V~~s~ 78 (304)
..|+++|..+. ......+ ++-+=..|.|.+.++|++|...+. ..+.|..+.++.+.
T Consensus 10 ~~l~~l~~~~~~~~~~~~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 10 AELEELFSTYDPPVQFSPL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHTT-SS-EEEEE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHhcCCceEEEEc-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45677777774 3444444 355568999999999999998744 67888888888753
No 220
>KOG0835|consensus
Probab=37.70 E-value=51 Score=30.26 Aligned_cols=12 Identities=8% Similarity=0.562 Sum_probs=6.8
Q ss_pred CCCCHHHHHHHh
Q psy10467 152 YECKKEDVEKFL 163 (304)
Q Consensus 152 ~~~t~~dl~~~F 163 (304)
|.+++++|.++.
T Consensus 211 Fd~~k~eid~ic 222 (367)
T KOG0835|consen 211 FDTTKREIDEIC 222 (367)
T ss_pred cCCcHHHHHHHH
Confidence 456666665544
No 221
>KOG3424|consensus
Probab=37.12 E-value=68 Score=24.82 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhhcC-CCccceEEEeeC-----CCCCcccEEEEEecCHHHH
Q psy10467 153 ECKKEDVEKFLEGL-EIVPNGITIPHD-----YAGRCTGVAYIQFVDKENA 197 (304)
Q Consensus 153 ~~t~~dl~~~F~~~-g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a 197 (304)
+++.+||++-.... ..-.| +.++.+ -.|+++|||.|. ++.|.|
T Consensus 34 ~vsK~EirEKla~mYkt~~d-~V~vfgfrt~~GggkstgfalIY-dsve~a 82 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPD-AVFVFGFRTHFGGGKSTGFALIY-DSVEYA 82 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcc-eEEEEEeeeccCCcccceeeeee-ehHHHH
Confidence 56777887777653 33333 334333 468999999874 444433
No 222
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=36.35 E-value=71 Score=23.28 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=30.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEe
Q psy10467 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQF 191 (304)
Q Consensus 145 v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f 191 (304)
|||+|++..+-+.-...+.+..+.-. +.++....+ ..||+|-..
T Consensus 28 VyVg~~s~rVRe~lW~~v~~~~~~G~--a~m~~~~~n-eqG~~~~t~ 71 (86)
T PF09707_consen 28 VYVGNVSARVRERLWERVTEWIGDGS--AVMVWSDNN-EQGFDFRTL 71 (86)
T ss_pred cEEcCCCHHHHHHHHHHHHhhCCCcc--EEEEEccCC-CCCEEEEEe
Confidence 99999999888775555555444433 566655444 889999887
No 223
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=36.11 E-value=46 Score=25.42 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=27.3
Q ss_pred hhcCCCC---cceEEEeeCCCCCceeeEEEEeCCHHH
Q psy10467 22 QFFKPIV---PVNILLLTDDAGRSSGEADVEFSSVDD 55 (304)
Q Consensus 22 ~fF~~~~---~~~i~i~~d~~Gr~~G~aFV~F~s~ed 55 (304)
+||.++. +-+|+|.+.++| .+|.|...|+.+.-
T Consensus 4 QF~~Gi~E~~vp~VrLtRsrdg-~~g~a~f~F~~p~~ 39 (111)
T PLN00039 4 QFIKGTDETTVPDVRLTRSRDG-TNGTAIFVFDQPSV 39 (111)
T ss_pred EEecCCCCCcCCceEEEEccCC-CccEEEEEECCchh
Confidence 6788773 468999999999 78999999999843
No 224
>KOG2068|consensus
Probab=35.92 E-value=17 Score=33.17 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=36.6
Q ss_pred hhcCCCC-cceEEEeeCCC--CC--ceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEe
Q psy10467 22 QFFKPIV-PVNILLLTDDA--GR--SSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYM 76 (304)
Q Consensus 22 ~fF~~~~-~~~i~i~~d~~--Gr--~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~ 76 (304)
++|..|+ +..|.+-.++. .. ..--++|+|..+|+|..||.. ++..+.++.++...
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASL 159 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhh
Confidence 5677774 45566655541 11 112279999999999999987 45778888765544
No 225
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=35.87 E-value=47 Score=25.36 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=27.9
Q ss_pred HhhcCCCC---cceEEEeeCCCCCceeeEEEEeCCHHHH
Q psy10467 21 SQFFKPIV---PVNILLLTDDAGRSSGEADVEFSSVDDA 56 (304)
Q Consensus 21 ~~fF~~~~---~~~i~i~~d~~Gr~~G~aFV~F~s~edA 56 (304)
-+||.++. +-+|+|-+.++| ..|-|...|.++.-.
T Consensus 10 IQF~~Gi~E~~vp~VrLtRsrdG-~tG~A~f~F~~p~~l 47 (113)
T PRK13610 10 IQFVKGENEKDQPEIRLFRNLDG-KKGKAVYKFYKPKTI 47 (113)
T ss_pred EEEecCCCCCcCCceEEEEccCC-CccEEEEEECCchhc
Confidence 36888773 468999998888 679999999999543
No 226
>KOG2318|consensus
Probab=35.69 E-value=1.1e+02 Score=30.27 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcC----CCccceEEEeeCC-----------CCC---------------------
Q psy10467 140 VDQCCMRLQGLPYE-CKKEDVEKFLEGL----EIVPNGITIPHDY-----------AGR--------------------- 182 (304)
Q Consensus 140 ~~~~~v~v~nLp~~-~t~~dl~~~F~~~----g~v~~~v~~~~~~-----------~g~--------------------- 182 (304)
...++|-|-||.+. +..+||..+|+.| |.|. .|.|.... +|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsil-SV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSIL-SVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCcee-EEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 66789999999997 7889999999876 3444 45553211 121
Q ss_pred ----------------cccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 183 ----------------CTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 183 ----------------~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
.-=||.|+|.+.+.|.+.. .++|.++...-..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 0027899999999999988 77999887654444
No 227
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=35.07 E-value=8 Score=30.87 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=52.3
Q ss_pred ceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcc
Q psy10467 42 SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKR 121 (304)
Q Consensus 42 ~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (304)
..++..+.|.+++|+++++....-.+++..|.+..-.+.. ..
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~--------------------------------------~~ 95 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDF--------------------------------------NP 95 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccc--------------------------------------cc
Confidence 4478999999999999999876666777666665522110 00
Q ss_pred hhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCcc
Q psy10467 122 SEMDWALKRQGAVLSGSAVDQCCMRLQGLPYE-CKKEDVEKFLEGLEIVP 170 (304)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~-~t~~dl~~~F~~~g~v~ 170 (304)
.+. .......-|.|.|||.. -+++-++.+-+.+|.+.
T Consensus 96 ~~~------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 96 SEV------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred ccc------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 000 00022345888999998 46677888888899775
No 228
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=34.79 E-value=48 Score=25.43 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.3
Q ss_pred HhhcCCCC---cceEEEeeCCCCCceeeEEEEeCCHHH
Q psy10467 21 SQFFKPIV---PVNILLLTDDAGRSSGEADVEFSSVDD 55 (304)
Q Consensus 21 ~~fF~~~~---~~~i~i~~d~~Gr~~G~aFV~F~s~ed 55 (304)
-+||.++. +-+|+|.+.++| .+|-|...|+++.-
T Consensus 6 IQF~~Gi~E~~ip~VrLtRsrdg-~~g~a~f~F~~p~a 42 (113)
T PRK13612 6 IQFSRGVDEPVVPDIRLTRSRDG-RTGQATFYFEQPQA 42 (113)
T ss_pred EEEecCCCCCcCCceEEEEccCC-CeeEEEEEECCccc
Confidence 36888773 368999998888 77999999999844
No 229
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=33.47 E-value=48 Score=25.00 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=26.0
Q ss_pred hhcCCCC--cceEEEeeCCCCCceeeEEEEeCCHH
Q psy10467 22 QFFKPIV--PVNILLLTDDAGRSSGEADVEFSSVD 54 (304)
Q Consensus 22 ~fF~~~~--~~~i~i~~d~~Gr~~G~aFV~F~s~e 54 (304)
+||.++. +-+|+|.+.++| .+|.|...|+++.
T Consensus 5 QF~~Gi~E~~p~VrLtRsrdg-~~g~a~f~F~~~~ 38 (104)
T PRK13611 5 EFSPGIPEVPTQVRLLKSKTG-KRGSAIFRFEDLK 38 (104)
T ss_pred EEecCCCCCCCceEEEEccCC-CccEEEEEEcCCc
Confidence 6777773 358999999998 7899999999864
No 230
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.96 E-value=58 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.7
Q ss_pred EEEEecCHHHHHHHHHh--CCCccCCeEEEEEE
Q psy10467 187 AYIQFVDKENAEKALLR--HKEKIGHRLVTLVM 217 (304)
Q Consensus 187 afV~f~~~~~a~~A~~~--~~~~~~gr~i~V~~ 217 (304)
|.|+|...+-|+.-+++ +...+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999966 55677888777754
No 231
>KOG1554|consensus
Probab=29.78 E-value=22 Score=31.84 Aligned_cols=9 Identities=67% Similarity=1.460 Sum_probs=6.7
Q ss_pred cccCCCCCC
Q psy10467 294 SYHRRPGYG 302 (304)
Q Consensus 294 ~~~~~~~~~ 302 (304)
=||+|||||
T Consensus 136 WyHSHPgYg 144 (347)
T KOG1554|consen 136 WYHSHPGYG 144 (347)
T ss_pred eeecCCCCC
Confidence 468888887
No 232
>KOG4008|consensus
Probab=29.10 E-value=48 Score=28.92 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCcc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVP 170 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~ 170 (304)
....++|+-|+|-.+|++.|..+.+++|.+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 5667899999999999999999999998665
No 233
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.85 E-value=67 Score=29.15 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=21.6
Q ss_pred EEEEecCHHHHHHHHHh-CCCccCCeEEEEEEcCC
Q psy10467 187 AYIQFVDKENAEKALLR-HKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 187 afV~f~~~~~a~~A~~~-~~~~~~gr~i~V~~~~~ 220 (304)
|||+|++..+|..|++. .... .+.+.|..|-+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 79999999999999964 2222 23335555433
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=27.35 E-value=87 Score=21.81 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 157 EDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 157 ~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
++|++-|.+.|--...|..+.. +++.+--.-+|+.....+... -++-+.|+|+.|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCc
Confidence 4678888888843324665655 445666778888876544444 335567899999987643
No 235
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=25.86 E-value=1.3e+02 Score=22.54 Aligned_cols=46 Identities=7% Similarity=0.069 Sum_probs=28.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecC
Q psy10467 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVD 193 (304)
Q Consensus 145 v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~ 193 (304)
|||++++..+.+.--..+-+.++.- .+.++...+ ...||+|-++..
T Consensus 30 VyVg~~S~rVRd~lW~~v~~~~~~G--~avmv~~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 30 VYVGDVSRRIREMIWQQVTQLAEEG--NVVMAWATN-TESGFEFQTFGE 75 (97)
T ss_pred cEEcCCCHHHHHHHHHHHHHhCCCC--cEEEEEcCC-CCCCcEEEecCC
Confidence 9999998887765333333333332 255555434 444999988753
No 236
>KOG4019|consensus
Probab=25.16 E-value=95 Score=26.05 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=50.0
Q ss_pred EEEEcCCCCCCC--H---HHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCe-EEEEE
Q psy10467 144 CMRLQGLPYECK--K---EDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHR-LVTLV 216 (304)
Q Consensus 144 ~v~v~nLp~~~t--~---~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr-~i~V~ 216 (304)
.+.+.+++..+- . .+..++|.++.... -..++ ++.++--|-|.+++.|..|. .++...|.|. .+..+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~-~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDA-TFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcch-HHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 366666665432 2 34566677666543 23333 34556778999999999999 6688888887 88888
Q ss_pred EcCCcccc
Q psy10467 217 MSGAQWFL 224 (304)
Q Consensus 217 ~~~~~~~~ 224 (304)
.+.+..+.
T Consensus 86 faQ~~~~~ 93 (193)
T KOG4019|consen 86 FAQPGHPE 93 (193)
T ss_pred EccCCCcc
Confidence 88775443
No 237
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=25.01 E-value=2.8e+02 Score=20.30 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHhhcCCCccceEEEe-eCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEE
Q psy10467 150 LPYECKKEDVEKFLEGLEIVPNGITIP-HDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVM 217 (304)
Q Consensus 150 Lp~~~t~~dl~~~F~~~g~v~~~v~~~-~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~ 217 (304)
+.+..=.+.|.+.|.- ..-. .+.+- .|.+| -+|.+.+.+|...|+..+...-....|+|..
T Consensus 25 ~~~~~L~~kI~~~f~l-~~~~-~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 25 LNMDGLREKVEELFSL-SPDA-DLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred CCHHHHHHHHHHHhCC-CCCC-cEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 3334444556666642 2211 24443 33556 6999999999999997654444455555543
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.54 E-value=1.8e+02 Score=20.62 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q psy10467 145 MRLQGLPYECKKEDVEKFLEG-LEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201 (304)
Q Consensus 145 v~v~nLp~~~t~~dl~~~F~~-~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~ 201 (304)
-|+-.++..++..+|++.++. |+.-...|..+.-..+.- -|||.+...++|...-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK--KAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 566677889999999999987 453222354444343322 4999998877776654
No 239
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=22.57 E-value=3.2e+02 Score=20.03 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=36.3
Q ss_pred hhhHHhhcCCCCcceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 17 CLLCSQFFKPIVPVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
...|++.|+-....++.|. .|.+| -+|.+.+.+|-+.|+......-...+|++..
T Consensus 31 ~~kI~~~f~l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 31 REKVEELFSLSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred HHHHHHHhCCCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 3456677753223456665 35455 5999999999999998865444555665554
No 240
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=22.51 E-value=2.2e+02 Score=21.30 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCCHHHHHHHhhc-CCCccceEEEeeC-----CCCCcccEEEEEecCHHHHHH
Q psy10467 153 ECKKEDVEKFLEG-LEIVPNGITIPHD-----YAGRCTGVAYIQFVDKENAEK 199 (304)
Q Consensus 153 ~~t~~dl~~~F~~-~g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~~ 199 (304)
+.+..||++-... ++.-.+ ..++.. -.|+++|||.|. ++.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~-~vvv~~~~t~fG~g~s~G~a~IY-ds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKE-LVVVRKIKTEYGMGKSKGYAKVY-DDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCC-EEEEEccCccCCCceEEEEEEEE-CCHHHHHh
Confidence 4566677666554 343332 333333 246777888764 45554443
No 241
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.99 E-value=2.5e+02 Score=22.28 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=24.7
Q ss_pred CCCHHHHHHHhhc-CC-CccceEEEeeC-----CCCCcccEEEEEecCHHHHH
Q psy10467 153 ECKKEDVEKFLEG-LE-IVPNGITIPHD-----YAGRCTGVAYIQFVDKENAE 198 (304)
Q Consensus 153 ~~t~~dl~~~F~~-~g-~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~ 198 (304)
+.+..||++-... |+ .-. ...++.. -.|+++|||.|. ++.+.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~-~~Vvv~~~~T~fG~g~StG~a~IY-ds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADA-RTIVLFGFKTKFGGGKTTGFGLIY-DNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCC-CEEEEEccEecCCCceEEEEEEEE-CCHHHHH
Confidence 5677788777765 34 222 2333333 256788888774 4444433
No 242
>KOG4213|consensus
Probab=20.69 E-value=86 Score=26.25 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=36.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCC--CcccEEEEEecCHHHHHHHHHhCCCc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAG--RCTGVAYIQFVDKENAEKALLRHKEK 207 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g--~~~G~afV~f~~~~~a~~A~~~~~~~ 207 (304)
+++|.. +....-++|.++-+ |.+. .|.+-....+ .-+|--||+|.+.++|.+.+......
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~-nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~ 173 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGH-NVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEK 173 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccce-EeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhh
Confidence 446665 33344455555544 5554 2444333333 56789999999999999988654433
Done!