Query psy10467
Match_columns 304
No_of_seqs 240 out of 2039
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 18:58:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2E-30 6.7E-35 219.1 15.4 164 1-224 21-186 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 7.4E-30 2.5E-34 209.4 15.2 155 2-220 9-166 (166)
3 4f02_A Polyadenylate-binding p 100.0 1.2E-29 4E-34 218.3 14.1 156 1-221 23-181 (213)
4 2qfj_A FBP-interacting repress 100.0 5.1E-29 1.7E-33 213.5 16.5 166 1-221 36-205 (216)
5 2cjk_A Nuclear polyadenylated 100.0 5.2E-30 1.8E-34 211.1 8.4 154 1-221 11-166 (167)
6 1fxl_A Paraneoplastic encephal 100.0 1.9E-28 6.6E-33 201.2 14.0 152 1-218 10-167 (167)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-28 4.7E-33 202.6 12.4 152 1-218 11-168 (168)
8 2ghp_A U4/U6 snRNA-associated 100.0 3E-28 1E-32 218.8 14.4 147 1-221 49-197 (292)
9 3nmr_A Cugbp ELAV-like family 100.0 5.3E-28 1.8E-32 200.2 13.2 154 1-219 11-175 (175)
10 2yh0_A Splicing factor U2AF 65 100.0 3.1E-28 1E-32 205.9 10.9 179 1-221 12-194 (198)
11 1fje_B Nucleolin RBD12, protei 100.0 3.3E-28 1.1E-32 202.0 10.8 153 1-221 21-174 (175)
12 2g4b_A Splicing factor U2AF 65 99.9 5.3E-28 1.8E-32 200.0 9.9 157 1-219 12-172 (172)
13 3smz_A Protein raver-1, ribonu 99.9 7.3E-27 2.5E-31 208.9 16.0 160 1-223 103-266 (284)
14 3smz_A Protein raver-1, ribonu 99.9 1.9E-26 6.6E-31 206.1 16.3 136 18-221 37-175 (284)
15 2ghp_A U4/U6 snRNA-associated 99.9 8.3E-27 2.8E-31 209.3 11.5 162 1-221 125-291 (292)
16 3sde_A Paraspeckle component 1 99.9 2.8E-25 9.5E-30 196.7 13.4 145 1-222 30-180 (261)
17 3pgw_A U1-A; protein-RNA compl 99.9 1.4E-24 4.7E-29 193.9 15.9 75 140-219 205-281 (282)
18 3tyt_A Heterogeneous nuclear r 99.9 5.1E-25 1.8E-29 188.2 12.2 187 7-218 9-204 (205)
19 2adc_A Polypyrimidine tract-bi 99.9 9.2E-25 3.2E-29 189.6 13.0 181 2-221 43-228 (229)
20 1qm9_A Polypyrimidine tract-bi 99.9 5.3E-25 1.8E-29 186.4 10.8 174 18-221 19-197 (198)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.9E-23 6.4E-28 171.0 13.5 145 32-221 3-150 (158)
22 2i2y_A Fusion protein consists 99.8 3E-20 1E-24 150.7 12.5 135 41-221 11-148 (150)
23 4f25_A Polyadenylate-binding p 99.8 3.6E-20 1.2E-24 143.6 9.6 77 142-220 5-82 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 7.8E-20 2.7E-24 137.9 10.7 80 140-220 17-98 (99)
25 1wg5_A Heterogeneous nuclear r 99.8 6.4E-20 2.2E-24 139.6 9.4 86 140-225 13-98 (104)
26 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-19 3.5E-24 138.1 9.8 81 140-222 13-93 (102)
27 2dha_A FLJ20171 protein; RRM d 99.8 5.3E-20 1.8E-24 144.2 6.9 85 140-224 21-108 (123)
28 2db1_A Heterogeneous nuclear r 99.8 1.3E-19 4.6E-24 141.0 8.5 84 140-224 15-101 (118)
29 2dnn_A RNA-binding protein 12; 99.8 1.8E-19 6.2E-24 138.2 8.9 81 141-223 15-95 (109)
30 2cpy_A RNA-binding protein 12; 99.8 1.4E-19 4.8E-24 140.0 7.5 84 140-224 13-97 (114)
31 2lxi_A RNA-binding protein 10; 99.8 1.5E-19 5E-24 134.3 6.9 78 143-221 2-83 (91)
32 3s8s_A Histone-lysine N-methyl 99.8 7.5E-19 2.6E-23 135.1 11.0 81 140-221 4-86 (110)
33 2lmi_A GRSF-1, G-rich sequence 99.8 8.4E-20 2.9E-24 139.7 4.9 84 140-224 9-95 (107)
34 2hgm_A HNRPF protein, heteroge 99.8 1E-19 3.5E-24 143.0 5.4 85 140-224 40-124 (126)
35 2hgl_A HNRPF protein, heteroge 99.8 3.3E-19 1.1E-23 142.1 8.4 83 140-223 42-127 (136)
36 2fy1_A RNA-binding motif prote 99.8 2.2E-18 7.4E-23 133.8 12.5 82 140-222 5-87 (116)
37 2lkz_A RNA-binding protein 5; 99.8 1E-18 3.5E-23 130.7 9.5 80 140-220 7-94 (95)
38 2dgs_A DAZ-associated protein 99.8 3E-18 1E-22 128.9 11.9 82 140-222 8-90 (99)
39 3p5t_L Cleavage and polyadenyl 99.8 5.1E-19 1.7E-23 130.9 6.8 78 143-221 2-83 (90)
40 2dgw_A Probable RNA-binding pr 99.8 4.4E-18 1.5E-22 125.9 11.3 80 140-221 8-87 (91)
41 1whw_A Hypothetical protein ri 99.8 5E-18 1.7E-22 127.6 11.7 82 140-222 6-89 (99)
42 1x5t_A Splicing factor 3B subu 99.8 4.5E-18 1.5E-22 127.0 11.2 82 140-222 3-87 (96)
43 3md1_A Nuclear and cytoplasmic 99.8 4E-18 1.4E-22 123.8 10.6 78 143-221 2-81 (83)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.5E-18 1.9E-22 128.1 11.7 83 140-223 10-94 (102)
45 2dnz_A Probable RNA-binding pr 99.8 5.9E-18 2E-22 126.1 11.7 81 140-221 3-85 (95)
46 1wel_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 137.2 7.8 84 140-223 23-106 (124)
47 2do0_A HnRNP M, heterogeneous 99.8 1.4E-17 4.7E-22 128.4 14.0 81 140-221 13-94 (114)
48 3s7r_A Heterogeneous nuclear r 99.8 4.3E-18 1.5E-22 124.9 10.2 78 140-218 9-87 (87)
49 2dgo_A Cytotoxic granule-assoc 99.8 1.6E-17 5.6E-22 128.3 13.9 82 140-222 13-96 (115)
50 1s79_A Lupus LA protein; RRM, 99.8 1.3E-18 4.6E-23 132.1 7.6 80 140-220 9-88 (103)
51 2do4_A Squamous cell carcinoma 99.8 6.8E-18 2.3E-22 127.2 11.4 81 140-221 15-96 (100)
52 2d9p_A Polyadenylate-binding p 99.8 8E-18 2.7E-22 127.5 11.7 81 140-222 13-94 (103)
53 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.6E-18 1.6E-22 124.6 9.8 80 140-220 4-85 (87)
54 2dng_A Eukaryotic translation 99.7 9.9E-18 3.4E-22 127.0 11.7 80 140-221 13-93 (103)
55 2cq0_A Eukaryotic translation 99.7 6.8E-18 2.3E-22 127.8 10.6 82 140-222 13-96 (103)
56 2hgn_A Heterogeneous nuclear r 99.7 5E-19 1.7E-23 141.5 4.5 82 140-223 44-125 (139)
57 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-17 3.6E-22 129.4 11.8 82 140-222 23-106 (115)
58 1x5s_A Cold-inducible RNA-bind 99.7 8.9E-18 3E-22 126.9 11.2 82 140-222 10-93 (102)
59 2dnh_A Bruno-like 5, RNA bindi 99.7 1.3E-17 4.5E-22 126.7 12.1 82 140-222 13-98 (105)
60 1x5u_A Splicing factor 3B subu 99.7 1.2E-17 4E-22 126.9 11.3 82 140-222 13-96 (105)
61 2la6_A RNA-binding protein FUS 99.7 1.4E-17 4.7E-22 125.3 11.6 80 139-219 10-99 (99)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.2E-18 2.1E-22 123.3 9.2 79 140-219 5-85 (85)
63 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.1E-18 2.1E-22 139.3 10.2 81 140-221 70-152 (165)
64 2cq3_A RNA-binding protein 9; 99.7 3.2E-17 1.1E-21 124.1 13.3 82 140-223 13-95 (103)
65 2x1f_A MRNA 3'-END-processing 99.7 1E-17 3.5E-22 125.3 10.5 81 142-223 2-84 (96)
66 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-17 4.6E-22 126.5 11.2 81 140-222 13-95 (104)
67 2cpe_A RNA-binding protein EWS 99.7 2.2E-17 7.6E-22 127.1 12.5 83 140-222 13-104 (113)
68 2dnm_A SRP46 splicing factor; 99.7 7.7E-18 2.6E-22 127.5 9.7 81 140-221 11-93 (103)
69 2ywk_A Putative RNA-binding pr 99.7 8.1E-18 2.8E-22 125.4 9.4 79 140-219 14-93 (95)
70 2cph_A RNA binding motif prote 99.7 2E-17 6.7E-22 126.1 11.7 82 140-222 13-98 (107)
71 2mss_A Protein (musashi1); RNA 99.7 3.4E-18 1.2E-22 121.8 6.9 74 144-218 1-75 (75)
72 2cpf_A RNA binding motif prote 99.7 9.9E-18 3.4E-22 125.7 9.7 82 140-222 3-89 (98)
73 2cqc_A Arginine/serine-rich sp 99.7 1.4E-17 4.8E-22 124.0 10.5 80 140-220 13-94 (95)
74 3ulh_A THO complex subunit 4; 99.7 1.5E-17 5.2E-22 126.8 10.8 79 140-219 27-106 (107)
75 2dhg_A TRNA selenocysteine ass 99.7 1.1E-17 3.6E-22 126.9 9.9 82 140-222 7-91 (104)
76 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-17 5.2E-22 123.6 10.6 79 140-219 14-94 (94)
77 3ucg_A Polyadenylate-binding p 99.7 8.9E-18 3E-22 123.6 9.0 79 142-221 6-85 (89)
78 1x4h_A RNA-binding protein 28; 99.7 2.4E-17 8.4E-22 126.4 11.9 81 140-221 13-101 (111)
79 2lea_A Serine/arginine-rich sp 99.7 2.7E-18 9.2E-23 136.8 6.6 81 140-221 45-127 (135)
80 3ns6_A Eukaryotic translation 99.7 1.7E-18 5.9E-23 130.7 5.1 81 140-221 4-93 (100)
81 2dh8_A DAZ-associated protein 99.7 8.8E-18 3E-22 127.7 9.1 82 140-222 14-96 (105)
82 2cqp_A RNA-binding protein 12; 99.7 3E-17 1E-21 123.1 11.3 81 140-221 13-95 (98)
83 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-17 8.5E-22 125.3 11.0 82 140-222 11-97 (106)
84 2dgv_A HnRNP M, heterogeneous 99.7 2.1E-17 7.2E-22 122.4 10.3 80 140-221 6-86 (92)
85 1x4b_A Heterogeneous nuclear r 99.7 2.3E-17 7.8E-22 127.7 10.8 81 141-222 26-107 (116)
86 2cqg_A TDP-43, TAR DNA-binding 99.7 4.2E-17 1.5E-21 123.4 12.1 81 140-222 13-94 (103)
87 3ex7_B RNA-binding protein 8A; 99.7 1.4E-17 4.8E-22 130.8 9.7 81 140-221 20-102 (126)
88 2dgx_A KIAA0430 protein; RRM d 99.7 2.3E-17 7.8E-22 123.5 10.4 79 140-221 7-90 (96)
89 1p27_B RNA-binding protein 8A; 99.7 2.1E-17 7.1E-22 125.8 10.2 81 140-221 21-103 (106)
90 2rs2_A Musashi-1, RNA-binding 99.7 2E-17 6.8E-22 126.8 10.1 82 140-222 23-105 (109)
91 2cqd_A RNA-binding region cont 99.7 7.1E-17 2.4E-21 124.9 13.3 80 140-221 15-96 (116)
92 4a8x_A RNA-binding protein wit 99.7 1.5E-17 5.2E-22 122.0 8.7 80 141-221 3-85 (88)
93 2kt5_A RNA and export factor-b 99.7 6E-17 2.1E-21 126.9 12.4 82 140-222 33-115 (124)
94 1oo0_B CG8781-PA, drosophila Y 99.7 2.5E-17 8.6E-22 126.2 10.0 81 140-221 24-106 (110)
95 3n9u_C Cleavage and polyadenyl 99.7 1.5E-17 5.3E-22 135.7 9.3 80 141-221 54-137 (156)
96 1l3k_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 137.8 11.5 81 140-221 11-92 (196)
97 2ek1_A RNA-binding protein 12; 99.7 2.4E-17 8.2E-22 122.8 9.6 79 140-219 13-93 (95)
98 2jrs_A RNA-binding protein 39; 99.7 2.3E-17 7.8E-22 126.3 9.7 81 140-221 24-106 (108)
99 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.1E-17 2.4E-21 122.2 12.3 81 140-222 13-94 (103)
100 1sjq_A Polypyrimidine tract-bi 99.7 1.5E-17 5E-22 126.1 8.4 79 140-224 14-95 (105)
101 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-17 4E-22 121.5 7.5 77 140-222 5-82 (89)
102 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.5E-18 2.2E-22 127.4 6.1 80 140-221 17-98 (100)
103 2fc9_A NCL protein; structure 99.7 4.9E-17 1.7E-21 122.6 10.9 78 140-221 13-91 (101)
104 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.3E-17 1.8E-21 132.3 11.4 81 140-221 37-119 (156)
105 2cq4_A RNA binding motif prote 99.7 9.1E-18 3.1E-22 129.6 6.5 81 141-222 24-105 (114)
106 2err_A Ataxin-2-binding protei 99.7 5.1E-17 1.8E-21 124.5 10.6 80 140-221 27-107 (109)
107 1iqt_A AUF1, heterogeneous nuc 99.7 6.2E-18 2.1E-22 120.4 5.0 74 144-218 1-75 (75)
108 1u6f_A Tcubp1, RNA-binding pro 99.7 7.5E-17 2.6E-21 128.8 11.5 82 140-222 40-123 (139)
109 2m2b_A RNA-binding protein 10; 99.7 2.2E-17 7.6E-22 130.7 8.3 80 140-221 21-108 (131)
110 2div_A TRNA selenocysteine ass 99.7 4.3E-17 1.5E-21 122.4 9.4 82 140-221 7-94 (99)
111 3md3_A Nuclear and cytoplasmic 99.7 6.6E-17 2.3E-21 131.8 11.1 77 143-220 1-78 (166)
112 2kxn_B Transformer-2 protein h 99.7 3.5E-17 1.2E-21 129.3 9.1 81 140-221 44-126 (129)
113 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 124.0 11.7 80 140-225 29-111 (119)
114 1p1t_A Cleavage stimulation fa 99.7 3.8E-17 1.3E-21 123.8 8.6 81 141-222 7-89 (104)
115 3r27_A HnRNP L, heterogeneous 99.7 7.3E-17 2.5E-21 121.1 10.0 77 140-222 19-98 (100)
116 2jwn_A Embryonic polyadenylate 99.7 5.3E-17 1.8E-21 127.1 9.7 79 142-221 36-115 (124)
117 2cq1_A PTB-like protein L; RRM 99.7 1.8E-16 6.1E-21 119.7 12.0 79 140-224 13-94 (101)
118 1x4a_A Splicing factor, argini 99.7 1.7E-16 5.6E-21 121.5 12.0 79 140-221 20-99 (109)
119 2khc_A Testis-specific RNP-typ 99.7 4.1E-17 1.4E-21 126.6 8.6 78 140-218 38-117 (118)
120 2jvr_A Nucleolar protein 3; RN 99.7 4.1E-17 1.4E-21 125.3 8.5 77 140-220 26-104 (111)
121 1b7f_A Protein (SXL-lethal pro 99.7 1E-16 3.5E-21 131.2 11.3 79 141-220 2-82 (168)
122 2krb_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 120.0 5.6 71 143-215 2-80 (81)
123 2dis_A Unnamed protein product 99.7 1E-16 3.5E-21 122.5 10.1 82 140-222 6-93 (109)
124 2nlw_A Eukaryotic translation 99.7 5.3E-17 1.8E-21 123.5 8.3 80 140-221 13-100 (105)
125 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-17 5.2E-22 125.4 5.2 80 140-221 15-95 (101)
126 3pgw_S U1-70K; protein-RNA com 99.7 1.4E-16 4.8E-21 150.5 13.1 83 140-223 100-184 (437)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.5E-17 1.2E-21 117.0 6.8 75 143-218 1-76 (77)
128 2fc8_A NCL protein; structure 99.7 2.1E-16 7.2E-21 119.3 11.5 79 140-222 13-93 (102)
129 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.9E-22 121.5 4.8 77 140-217 3-81 (85)
130 2cpi_A CCR4-NOT transcription 99.7 5.5E-17 1.9E-21 124.7 8.3 82 140-222 13-102 (111)
131 4f02_A Polyadenylate-binding p 99.7 5.6E-17 1.9E-21 138.9 9.2 80 140-220 13-94 (213)
132 3beg_B Splicing factor, argini 99.7 4.1E-17 1.4E-21 126.3 7.5 74 140-220 14-93 (115)
133 1fxl_A Paraneoplastic encephal 99.7 1.9E-16 6.4E-21 129.2 11.9 78 142-220 2-81 (167)
134 1wex_A Hypothetical protein (r 99.7 1.4E-16 4.9E-21 121.0 10.4 80 140-225 13-95 (104)
135 1x4c_A Splicing factor, argini 99.7 2.8E-16 9.6E-21 120.1 11.6 74 140-220 13-92 (108)
136 2dgu_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 118.2 12.0 75 140-222 9-84 (103)
137 2xs2_A Deleted in azoospermia- 99.7 3.6E-17 1.2E-21 123.6 5.9 80 140-221 7-86 (102)
138 1x5o_A RNA binding motif, sing 99.7 3E-16 1E-20 121.0 11.1 80 140-220 23-111 (114)
139 2dnq_A RNA-binding protein 4B; 99.7 3.1E-16 1.1E-20 115.7 10.7 75 140-222 6-81 (90)
140 2cpx_A Hypothetical protein FL 99.7 6E-17 2.1E-21 125.0 6.9 83 140-223 23-107 (115)
141 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.9E-16 6.5E-21 126.3 9.6 78 140-218 61-140 (140)
142 2e5j_A Methenyltetrahydrofolat 99.7 3.6E-16 1.2E-20 117.0 10.5 77 140-221 17-94 (97)
143 2ki2_A SS-DNA binding protein 99.7 2.3E-17 8E-22 121.7 3.8 77 143-221 2-80 (90)
144 1x4d_A Matrin 3; structural ge 99.7 1.6E-16 5.5E-21 120.1 8.3 76 140-221 13-92 (102)
145 2hvz_A Splicing factor, argini 99.7 3.4E-16 1.2E-20 118.0 9.9 74 143-221 1-75 (101)
146 2cqh_A IGF-II mRNA-binding pro 99.7 3.8E-16 1.3E-20 115.9 10.0 75 140-221 6-83 (93)
147 2cpj_A Non-POU domain-containi 99.7 8.5E-16 2.9E-20 115.4 11.6 77 140-222 13-90 (99)
148 1fjc_A Nucleolin RBD2, protein 99.7 2E-16 6.8E-21 118.1 7.9 77 140-221 14-91 (96)
149 3q2s_C Cleavage and polyadenyl 99.7 1.2E-16 4.1E-21 138.5 7.6 80 141-221 67-150 (229)
150 2dgt_A RNA-binding protein 30; 99.7 1.5E-15 5.2E-20 112.4 12.3 75 140-222 8-83 (92)
151 1x4g_A Nucleolysin TIAR; struc 99.7 5.7E-16 1.9E-20 118.5 10.2 76 140-221 23-99 (109)
152 1x4f_A Matrin 3; structural ge 99.6 3.5E-16 1.2E-20 120.1 8.5 77 140-222 23-103 (112)
153 2a3j_A U1 small nuclear ribonu 99.6 4.3E-16 1.5E-20 122.6 9.0 79 140-221 27-110 (127)
154 2f3j_A RNA and export factor b 99.6 4.9E-16 1.7E-20 129.4 9.9 82 140-222 86-168 (177)
155 2dnp_A RNA-binding protein 14; 99.6 9.6E-16 3.3E-20 113.0 10.2 74 140-221 7-81 (90)
156 2la4_A Nuclear and cytoplasmic 99.6 5.3E-16 1.8E-20 116.9 8.9 75 140-220 25-100 (101)
157 1fje_B Nucleolin RBD12, protei 99.6 1.1E-16 3.9E-21 132.1 5.5 80 140-220 11-90 (175)
158 3tyt_A Heterogeneous nuclear r 99.6 1.2E-15 4.3E-20 129.9 12.0 77 140-221 2-80 (205)
159 2cpd_A Apobec-1 stimulating pr 99.6 2.4E-15 8E-20 112.9 12.0 74 140-221 13-89 (99)
160 1why_A Hypothetical protein ri 99.6 7.5E-16 2.6E-20 115.2 9.1 76 140-221 15-93 (97)
161 1qm9_A Polypyrimidine tract-bi 99.6 2.3E-15 7.8E-20 126.9 13.2 76 142-222 3-80 (198)
162 1nu4_A U1A RNA binding domain; 99.6 2.5E-16 8.5E-21 117.7 6.4 79 140-221 6-89 (97)
163 2jvo_A Nucleolar protein 3; nu 99.6 1.1E-15 3.9E-20 116.8 10.0 74 140-221 29-103 (108)
164 2e5g_A U6 snRNA-specific termi 99.6 1.2E-15 3.9E-20 113.6 9.8 77 140-221 6-82 (94)
165 1wg1_A KIAA1579 protein, homol 99.6 1.6E-15 5.4E-20 111.5 10.3 76 140-222 3-79 (88)
166 1wf1_A RNA-binding protein RAL 99.6 1.8E-15 6.1E-20 115.9 10.9 74 140-221 25-100 (110)
167 3lqv_A PRE-mRNA branch site pr 99.6 1E-15 3.5E-20 118.1 9.4 80 140-222 6-86 (115)
168 4f25_A Polyadenylate-binding p 99.6 1.5E-16 5E-21 123.1 4.5 69 1-79 13-82 (115)
169 2ytc_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.5E-20 110.9 9.3 74 140-219 10-85 (85)
170 2cjk_A Nuclear polyadenylated 99.6 3.1E-16 1.1E-20 128.3 6.6 77 142-220 3-80 (167)
171 3pgw_A U1-A; protein-RNA compl 99.6 9.7E-15 3.3E-19 129.8 16.8 79 140-221 7-90 (282)
172 2xnq_A Nuclear polyadenylated 99.6 1.7E-15 6E-20 113.4 10.1 74 140-221 20-95 (97)
173 2yh0_A Splicing factor U2AF 65 99.6 4.4E-16 1.5E-20 130.9 7.4 80 141-221 3-88 (198)
174 2adc_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 129.5 12.8 77 140-221 32-110 (229)
175 2lcw_A RNA-binding protein FUS 99.4 2.9E-17 9.9E-22 127.2 0.0 82 140-222 5-96 (116)
176 3nmr_A Cugbp ELAV-like family 99.6 1.5E-15 5.1E-20 124.9 10.2 78 141-219 2-86 (175)
177 1whx_A Hypothetical protein ri 99.6 9.5E-16 3.3E-20 117.8 8.3 77 140-222 8-85 (111)
178 3egn_A RNA-binding protein 40; 99.6 8.2E-16 2.8E-20 123.4 8.0 81 140-221 43-130 (143)
179 2kvi_A Nuclear polyadenylated 99.6 9.7E-16 3.3E-20 114.5 7.9 74 140-221 8-83 (96)
180 2qfj_A FBP-interacting repress 99.6 2.4E-16 8.3E-21 134.3 5.2 78 141-219 27-106 (216)
181 2voo_A Lupus LA protein; RNA-b 99.6 2.1E-15 7.2E-20 127.3 10.1 78 142-220 109-186 (193)
182 3d2w_A TAR DNA-binding protein 99.6 2.3E-15 7.9E-20 111.0 8.1 76 140-221 9-84 (89)
183 2dnl_A Cytoplasmic polyadenyla 99.6 6.3E-15 2.2E-19 113.6 10.9 76 140-218 6-85 (114)
184 2g4b_A Splicing factor U2AF 65 99.6 6.3E-16 2.2E-20 127.0 5.1 77 141-218 3-85 (172)
185 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-15 7.2E-20 110.7 7.2 77 140-222 3-79 (88)
186 1x5p_A Negative elongation fac 99.6 1.2E-14 4.3E-19 108.6 11.5 75 140-222 13-88 (97)
187 2j8a_A Histone-lysine N-methyl 99.6 3.9E-15 1.3E-19 115.5 8.3 77 143-220 3-95 (136)
188 2hzc_A Splicing factor U2AF 65 99.6 3.3E-15 1.1E-19 109.1 7.4 71 140-216 4-85 (87)
189 2dnn_A RNA-binding protein 12; 99.6 5.9E-16 2E-20 118.5 2.9 72 1-82 24-95 (109)
190 2e44_A Insulin-like growth fac 99.6 5.7E-15 2E-19 110.1 8.1 79 140-222 13-93 (96)
191 2cq2_A Hypothetical protein LO 99.6 7.1E-15 2.4E-19 112.9 7.7 76 140-221 23-106 (114)
192 2pe8_A Splicing factor 45; RRM 99.6 1.8E-14 6.1E-19 109.5 9.8 85 140-225 6-98 (105)
193 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 118.5 9.1 78 140-221 44-124 (164)
194 3zzy_A Polypyrimidine tract-bi 99.6 1.9E-14 6.6E-19 113.0 10.0 78 140-222 26-107 (130)
195 2db1_A Heterogeneous nuclear r 99.5 8.7E-15 3E-19 113.6 7.2 72 1-78 25-96 (118)
196 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.1E-18 125.3 11.7 74 140-219 20-94 (261)
197 1wez_A HnRNP H', FTP-3, hetero 99.5 3E-15 1E-19 113.3 4.2 65 17-81 29-93 (102)
198 2e5i_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 110.2 10.9 75 142-222 25-103 (124)
199 2diu_A KIAA0430 protein; struc 99.5 2.4E-14 8.2E-19 105.1 8.3 70 142-221 8-84 (96)
200 2dha_A FLJ20171 protein; RRM d 99.5 1.4E-15 4.8E-20 118.9 1.7 76 1-81 31-106 (123)
201 2bz2_A Negative elongation fac 99.5 4.8E-14 1.6E-18 109.9 10.1 74 140-221 37-111 (121)
202 2hgl_A HNRPF protein, heteroge 99.5 7.5E-15 2.6E-19 116.8 5.5 72 1-78 52-123 (136)
203 1wg5_A Heterogeneous nuclear r 99.5 5.7E-15 2E-19 112.0 4.3 74 1-82 23-96 (104)
204 2hgm_A HNRPF protein, heteroge 99.5 2.1E-15 7.3E-20 118.3 -0.3 70 1-80 50-121 (126)
205 4fxv_A ELAV-like protein 1; RN 99.5 2E-14 6.9E-19 108.1 4.7 69 1-78 27-97 (99)
206 2lmi_A GRSF-1, G-rich sequence 99.5 1.7E-14 5.9E-19 109.9 4.3 73 1-79 19-91 (107)
207 2lxi_A RNA-binding protein 10; 99.5 1.3E-14 4.4E-19 107.4 2.5 72 1-81 9-84 (91)
208 2dit_A HIV TAT specific factor 99.5 6.9E-13 2.3E-17 101.8 11.5 78 140-221 13-102 (112)
209 2cpy_A RNA-binding protein 12; 99.4 3E-14 1E-18 109.8 3.5 73 1-81 23-95 (114)
210 2dgw_A Probable RNA-binding pr 99.4 6.6E-14 2.3E-18 103.2 5.0 63 18-80 25-87 (91)
211 2hgn_A Heterogeneous nuclear r 99.4 9.2E-15 3.1E-19 116.7 0.1 67 16-82 59-125 (139)
212 1jmt_A Splicing factor U2AF 35 99.4 4E-14 1.4E-18 107.4 3.6 71 147-218 20-103 (104)
213 3p5t_L Cleavage and polyadenyl 99.4 6.3E-14 2.2E-18 103.2 3.7 70 2-80 10-83 (90)
214 3v4m_A Splicing factor U2AF 65 99.4 2.4E-13 8.3E-18 103.2 7.0 83 140-223 3-99 (105)
215 2lkz_A RNA-binding protein 5; 99.4 1E-13 3.5E-18 103.3 4.1 70 2-78 18-93 (95)
216 3u1l_A PRE-mRNA-splicing facto 99.4 3.6E-13 1.2E-17 116.6 8.0 76 140-221 132-229 (240)
217 1whw_A Hypothetical protein ri 99.4 2.1E-13 7.1E-18 102.1 5.4 73 1-82 16-90 (99)
218 1s79_A Lupus LA protein; RRM, 99.4 9.7E-14 3.3E-18 105.1 3.4 68 1-77 19-86 (103)
219 2do4_A Squamous cell carcinoma 99.4 2.8E-13 9.7E-18 101.6 5.7 70 2-80 26-96 (100)
220 3s8s_A Histone-lysine N-methyl 99.4 2.8E-13 9.5E-18 103.8 5.2 63 17-79 20-85 (110)
221 3s7r_A Heterogeneous nuclear r 99.4 2E-13 6.9E-18 99.7 4.2 59 18-76 26-86 (87)
222 2mss_A Protein (musashi1); RNA 99.4 8.2E-14 2.8E-18 98.8 1.9 67 1-76 7-74 (75)
223 2dgs_A DAZ-associated protein 99.4 4.1E-13 1.4E-17 100.5 5.9 71 2-81 19-90 (99)
224 1wel_A RNA-binding protein 12; 99.4 1.4E-13 4.9E-18 107.6 3.4 71 2-80 34-104 (124)
225 2fy1_A RNA-binding motif prote 99.4 5.9E-13 2E-17 102.9 6.4 71 2-81 16-87 (116)
226 3bs9_A Nucleolysin TIA-1 isofo 99.4 4E-13 1.4E-17 97.9 5.0 70 1-79 14-85 (87)
227 3md1_A Nuclear and cytoplasmic 99.4 6.5E-13 2.2E-17 95.9 5.5 63 18-80 16-81 (83)
228 2ywk_A Putative RNA-binding pr 99.4 3.9E-13 1.3E-17 99.8 4.4 68 1-77 24-92 (95)
229 3ue2_A Poly(U)-binding-splicin 99.4 1.9E-12 6.4E-17 100.3 8.0 83 140-223 18-111 (118)
230 2cqp_A RNA-binding protein 12; 99.3 5.5E-13 1.9E-17 99.6 4.4 70 2-80 24-95 (98)
231 1uaw_A Mouse-musashi-1; RNP-ty 99.3 3E-13 1E-17 96.3 2.8 68 1-77 8-76 (77)
232 2rs2_A Musashi-1, RNA-binding 99.3 5E-13 1.7E-17 102.1 4.1 71 2-81 34-105 (109)
233 2do0_A HnRNP M, heterogeneous 99.3 1.2E-12 4E-17 100.5 6.2 63 18-80 30-94 (114)
234 2dhg_A TRNA selenocysteine ass 99.3 8.2E-13 2.8E-17 99.7 5.1 72 1-81 17-91 (104)
235 2d9p_A Polyadenylate-binding p 99.3 1.4E-12 4.7E-17 98.3 6.4 63 18-81 30-94 (103)
236 2dnh_A Bruno-like 5, RNA bindi 99.3 1E-12 3.6E-17 99.3 5.7 64 18-81 30-98 (105)
237 2cq0_A Eukaryotic translation 99.3 1.1E-12 3.8E-17 98.9 5.8 70 2-80 24-95 (103)
238 2ek1_A RNA-binding protein 12; 99.3 5.3E-13 1.8E-17 99.0 3.9 68 2-78 24-93 (95)
239 3ulh_A THO complex subunit 4; 99.3 7.3E-13 2.5E-17 100.5 4.7 68 2-78 38-106 (107)
240 1wi8_A EIF-4B, eukaryotic tran 99.3 6.8E-13 2.3E-17 100.3 4.4 65 17-81 29-95 (104)
241 3ucg_A Polyadenylate-binding p 99.3 6.1E-13 2.1E-17 97.4 4.0 70 1-79 14-84 (89)
242 2j76_E EIF-4B, EIF4B, eukaryot 99.3 4.5E-13 1.5E-17 100.7 3.2 62 18-79 34-97 (100)
243 1iqt_A AUF1, heterogeneous nuc 99.3 1.6E-13 5.4E-18 97.3 0.7 67 1-76 7-74 (75)
244 2dng_A Eukaryotic translation 99.3 1.1E-12 3.9E-17 98.9 5.3 64 17-80 29-93 (103)
245 2dnz_A Probable RNA-binding pr 99.3 1.1E-12 3.7E-17 97.3 5.0 70 2-80 14-85 (95)
246 2cqb_A Peptidyl-prolyl CIS-tra 99.3 7.5E-13 2.6E-17 99.6 4.2 64 18-81 27-93 (102)
247 2cpz_A CUG triplet repeat RNA- 99.3 1.1E-12 3.7E-17 101.0 5.1 70 2-80 34-105 (115)
248 1x5u_A Splicing factor 3B subu 99.3 1E-12 3.5E-17 99.4 4.9 71 2-81 24-96 (105)
249 2cqd_A RNA-binding region cont 99.3 1.3E-12 4.5E-17 100.7 5.6 71 1-80 25-96 (116)
250 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5.3E-16 92.3 11.2 75 141-221 9-90 (100)
251 2dgo_A Cytotoxic granule-assoc 99.3 1.6E-12 5.5E-17 100.0 6.0 72 1-81 23-96 (115)
252 2hvz_A Splicing factor, argini 99.3 8.1E-13 2.8E-17 99.3 4.2 67 1-80 8-75 (101)
253 1x5t_A Splicing factor 3B subu 99.3 8.8E-13 3E-17 98.0 4.4 72 1-81 13-87 (96)
254 1u6f_A Tcubp1, RNA-binding pro 99.3 1.9E-12 6.6E-17 102.9 6.2 72 1-81 50-123 (139)
255 2dh8_A DAZ-associated protein 99.3 5.7E-13 2E-17 100.8 2.9 72 1-81 24-96 (105)
256 2cqc_A Arginine/serine-rich sp 99.3 1.3E-12 4.4E-17 96.8 4.8 68 2-78 24-93 (95)
257 3n9u_C Cleavage and polyadenyl 99.3 1.3E-12 4.4E-17 106.3 4.9 70 1-79 63-136 (156)
258 1x5s_A Cold-inducible RNA-bind 99.3 1.3E-12 4.3E-17 98.3 4.5 72 1-81 20-93 (102)
259 1p27_B RNA-binding protein 8A; 99.3 1.6E-12 5.6E-17 98.4 5.2 69 2-79 32-102 (106)
260 2cqg_A TDP-43, TAR DNA-binding 99.3 2.7E-12 9.3E-17 96.7 6.2 71 1-81 23-94 (103)
261 2x1f_A MRNA 3'-END-processing 99.3 1.2E-12 4E-17 97.4 4.1 72 1-81 10-83 (96)
262 2la6_A RNA-binding protein FUS 99.3 2.2E-12 7.6E-17 96.5 5.5 61 17-77 27-98 (99)
263 2cq3_A RNA-binding protein 9; 99.3 2.7E-12 9.1E-17 96.7 6.0 71 1-81 23-94 (103)
264 2cpf_A RNA binding motif prote 99.3 1.6E-12 5.5E-17 97.0 4.7 72 1-81 13-89 (98)
265 1jmt_A Splicing factor U2AF 35 99.3 7.8E-13 2.7E-17 100.2 2.8 76 2-77 24-103 (104)
266 2jrs_A RNA-binding protein 39; 99.3 1.7E-12 5.7E-17 99.0 4.6 64 17-80 40-106 (108)
267 1x4b_A Heterogeneous nuclear r 99.3 1.4E-12 4.6E-17 100.6 3.9 65 17-81 41-107 (116)
268 2cpe_A RNA-binding protein EWS 99.3 2E-12 6.9E-17 99.1 4.8 64 18-81 30-104 (113)
269 2e5h_A Zinc finger CCHC-type a 99.3 1.7E-12 6E-17 96.0 4.2 60 18-77 31-93 (94)
270 3mdf_A Peptidyl-prolyl CIS-tra 99.3 1.2E-12 4E-17 95.0 3.2 68 1-77 15-84 (85)
271 2cph_A RNA binding motif prote 99.3 1.7E-12 5.9E-17 98.4 4.2 72 1-81 23-98 (107)
272 2kt5_A RNA and export factor-b 99.3 3.2E-12 1.1E-16 99.7 5.7 71 2-81 44-115 (124)
273 1p1t_A Cleavage stimulation fa 99.3 2.2E-12 7.4E-17 97.3 4.6 72 1-81 16-89 (104)
274 3ns6_A Eukaryotic translation 99.3 8.7E-13 3E-17 99.1 2.3 67 4-79 23-92 (100)
275 2dnm_A SRP46 splicing factor; 99.3 1.4E-12 4.8E-17 98.3 3.5 63 18-80 28-93 (103)
276 2cq4_A RNA binding motif prote 99.3 1.2E-12 4.2E-17 100.5 3.0 69 2-79 34-103 (114)
277 2dgp_A Bruno-like 4, RNA bindi 99.3 2.6E-12 9.1E-17 97.2 4.7 72 1-81 21-97 (106)
278 2dgv_A HnRNP M, heterogeneous 99.3 2.1E-12 7.3E-17 95.1 4.0 70 1-80 16-86 (92)
279 2kxn_B Transformer-2 protein h 99.3 2.5E-12 8.7E-17 101.2 4.5 63 18-80 61-126 (129)
280 1oo0_B CG8781-PA, drosophila Y 99.3 2.3E-12 8E-17 98.3 3.7 71 1-80 34-106 (110)
281 1x4h_A RNA-binding protein 28; 99.3 2.8E-12 9.7E-17 97.8 4.2 70 2-80 24-101 (111)
282 3lqv_A PRE-mRNA branch site pr 99.3 1.8E-12 6.2E-17 99.7 3.1 66 1-77 16-82 (115)
283 2cpi_A CCR4-NOT transcription 99.3 4.1E-12 1.4E-16 97.2 5.0 73 2-81 24-102 (111)
284 2jwn_A Embryonic polyadenylate 99.3 2.4E-12 8.2E-17 100.4 3.6 69 2-79 45-114 (124)
285 2fc9_A NCL protein; structure 99.2 8.4E-12 2.9E-16 93.6 6.2 61 18-80 30-91 (101)
286 2div_A TRNA selenocysteine ass 99.2 3E-12 1E-16 95.7 3.6 70 2-79 18-93 (99)
287 2cqi_A Nucleolysin TIAR; RNA r 99.2 6.2E-12 2.1E-16 94.7 5.3 71 1-81 23-94 (103)
288 2dgx_A KIAA0430 protein; RRM d 99.2 3.5E-12 1.2E-16 95.0 3.8 69 1-80 17-90 (96)
289 1h2v_Z 20 kDa nuclear CAP bind 99.2 6.6E-12 2.2E-16 101.9 5.7 72 1-81 47-120 (156)
290 1x4e_A RNA binding motif, sing 99.2 1.4E-12 4.9E-17 94.7 1.5 67 1-76 13-81 (85)
291 2ki2_A SS-DNA binding protein 99.2 2.4E-12 8.2E-17 94.5 2.7 71 1-81 9-81 (90)
292 2xs2_A Deleted in azoospermia- 99.2 1.4E-12 4.7E-17 98.2 1.3 70 1-80 17-86 (102)
293 2kn4_A Immunoglobulin G-bindin 99.2 4.8E-12 1.7E-16 102.8 4.6 71 1-80 78-150 (158)
294 1x5o_A RNA binding motif, sing 99.2 8.4E-12 2.9E-16 95.7 5.7 61 18-78 40-110 (114)
295 1fj7_A Nucleolin RBD1, protein 99.2 2.2E-12 7.5E-17 96.8 2.3 71 1-80 25-95 (101)
296 2err_A Ataxin-2-binding protei 99.2 4.1E-12 1.4E-16 96.9 3.6 69 2-80 38-107 (109)
297 3ex7_B RNA-binding protein 8A; 99.2 3.6E-12 1.2E-16 99.6 3.3 70 2-80 31-102 (126)
298 2jvr_A Nucleolar protein 3; RN 99.2 3.8E-12 1.3E-16 97.5 3.2 67 1-79 36-104 (111)
299 3s6e_A RNA-binding protein 39; 99.2 6.1E-11 2.1E-15 91.1 9.9 80 140-223 5-95 (114)
300 2khc_A Testis-specific RNP-typ 99.2 3E-12 1E-16 98.9 2.5 61 17-77 54-117 (118)
301 2m2b_A RNA-binding protein 10; 99.2 2.5E-12 8.6E-17 101.4 1.8 72 1-80 31-108 (131)
302 3tht_A Alkylated DNA repair pr 99.2 2.5E-11 8.4E-16 110.6 8.3 74 140-219 16-97 (345)
303 4a8x_A RNA-binding protein wit 99.2 3.5E-12 1.2E-16 93.0 2.2 69 2-79 13-84 (88)
304 1x4c_A Splicing factor, argini 99.2 1.5E-11 5.2E-16 93.5 5.5 66 1-81 23-94 (108)
305 3q2s_C Cleavage and polyadenyl 99.2 5.8E-12 2E-16 108.9 3.5 63 18-80 83-150 (229)
306 2nlw_A Eukaryotic translation 99.2 6.2E-12 2.1E-16 95.2 3.1 63 17-80 35-100 (105)
307 2krb_A Eukaryotic translation 99.2 2.5E-12 8.7E-17 92.6 0.7 57 17-74 21-80 (81)
308 2fc8_A NCL protein; structure 99.2 3.3E-11 1.1E-15 90.4 6.7 61 18-80 30-92 (102)
309 2voo_A Lupus LA protein; RNA-b 99.2 1.2E-11 4.1E-16 104.1 4.6 63 16-78 122-185 (193)
310 2lea_A Serine/arginine-rich sp 99.2 7.6E-12 2.6E-16 99.3 3.0 70 2-80 56-127 (135)
311 2wbr_A GW182, gawky, LD47780P; 99.2 9E-12 3.1E-16 90.4 3.1 63 2-78 16-79 (89)
312 2dis_A Unnamed protein product 99.2 1E-11 3.4E-16 94.5 3.5 72 1-81 16-93 (109)
313 1sjq_A Polypyrimidine tract-bi 99.2 6.8E-12 2.3E-16 94.9 2.2 68 1-82 24-94 (105)
314 1x4a_A Splicing factor, argini 99.2 1.8E-11 6.2E-16 93.1 4.4 69 1-80 30-99 (109)
315 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 1.4E-11 4.7E-16 97.8 3.9 66 2-76 72-139 (140)
316 2f3j_A RNA and export factor b 99.2 1.8E-11 6.1E-16 101.7 4.6 70 2-80 97-167 (177)
317 2ad9_A Polypyrimidine tract-bi 99.2 1.9E-11 6.4E-16 94.6 4.3 67 2-83 40-110 (119)
318 1rk8_A CG8781-PA, CG8781-PA pr 99.2 2E-11 6.9E-16 100.1 4.7 71 1-80 80-152 (165)
319 1fjc_A Nucleolin RBD2, protein 99.1 1.6E-11 5.4E-16 91.1 3.4 66 2-80 25-91 (96)
320 2lcw_A RNA-binding protein FUS 98.7 4.7E-12 1.6E-16 97.6 0.0 80 1-81 15-96 (116)
321 2cpx_A Hypothetical protein FL 99.1 7.1E-11 2.4E-15 90.6 5.8 73 1-81 33-106 (115)
322 2cq1_A PTB-like protein L; RRM 99.1 5.8E-11 2E-15 89.3 5.1 67 2-82 24-93 (101)
323 2j8a_A Histone-lysine N-methyl 99.1 2E-11 6.9E-16 94.7 2.6 65 12-76 15-92 (136)
324 3beg_B Splicing factor, argini 99.1 5.5E-11 1.9E-15 91.5 4.9 64 1-79 24-93 (115)
325 2e5j_A Methenyltetrahydrofolat 99.1 4.7E-11 1.6E-15 88.9 3.4 66 2-80 28-94 (97)
326 3r27_A HnRNP L, heterogeneous 99.1 6.9E-11 2.4E-15 88.4 4.3 66 1-80 29-97 (100)
327 2a3j_A U1 small nuclear ribonu 99.1 6.4E-11 2.2E-15 92.8 4.2 72 2-81 38-111 (127)
328 1wex_A Hypothetical protein (r 99.1 8.8E-11 3E-15 88.8 4.6 66 2-81 24-92 (104)
329 1x4f_A Matrin 3; structural ge 99.1 7.2E-11 2.5E-15 90.3 4.0 58 18-80 41-102 (112)
330 1why_A Hypothetical protein ri 99.1 7.4E-11 2.5E-15 87.8 3.8 65 2-80 26-93 (97)
331 2dnq_A RNA-binding protein 4B; 99.1 1.1E-10 3.6E-15 85.6 4.5 65 1-81 16-81 (90)
332 1x4d_A Matrin 3; structural ge 99.1 7.6E-11 2.6E-15 88.8 3.6 65 1-79 23-91 (102)
333 2cpj_A Non-POU domain-containi 99.0 7.1E-11 2.4E-15 88.2 3.3 58 18-80 30-89 (99)
334 3pgw_S U1-70K; protein-RNA com 99.0 2E-10 7E-15 108.3 7.2 66 17-82 116-184 (437)
335 2dgu_A Heterogeneous nuclear r 99.0 1.7E-10 5.9E-15 86.7 5.3 66 1-82 19-85 (103)
336 1nu4_A U1A RNA binding domain; 99.0 2.6E-11 8.9E-16 90.1 0.6 69 1-80 16-89 (97)
337 2e5g_A U6 snRNA-specific termi 99.0 8.8E-11 3E-15 86.9 3.5 66 1-80 16-82 (94)
338 2dnr_A Synaptojanin-1; RRM dom 99.0 6.9E-10 2.4E-14 80.6 8.0 77 140-224 5-89 (91)
339 1x4g_A Nucleolysin TIAR; struc 99.0 1.2E-10 4.1E-15 88.5 4.0 67 1-81 33-100 (109)
340 1wg1_A KIAA1579 protein, homol 99.0 1.2E-10 4.3E-15 85.0 3.6 57 18-79 20-77 (88)
341 2la4_A Nuclear and cytoplasmic 99.0 6.6E-11 2.3E-15 88.7 2.1 63 2-78 36-99 (101)
342 2i2y_A Fusion protein consists 99.0 1.3E-10 4.5E-15 93.5 4.0 66 1-79 81-147 (150)
343 2pe8_A Splicing factor 45; RRM 99.0 2E-10 6.8E-15 87.0 4.7 64 16-79 26-93 (105)
344 2jvo_A Nucleolar protein 3; nu 99.0 1.2E-10 4.2E-15 88.6 3.5 56 18-80 46-103 (108)
345 3egn_A RNA-binding protein 40; 99.0 1.1E-10 3.8E-15 93.2 3.1 75 2-80 54-130 (143)
346 3d2w_A TAR DNA-binding protein 99.0 8.6E-11 2.9E-15 86.2 2.2 65 2-80 20-84 (89)
347 1owx_A Lupus LA protein, SS-B, 99.0 8.3E-10 2.8E-14 85.2 7.6 76 140-221 16-96 (121)
348 2dnl_A Cytoplasmic polyadenyla 99.0 1.3E-10 4.4E-15 89.3 3.0 60 16-76 21-84 (114)
349 1x5p_A Negative elongation fac 99.0 2.5E-10 8.5E-15 84.9 4.3 63 14-81 24-88 (97)
350 2hzc_A Splicing factor U2AF 65 99.0 1.1E-10 3.8E-15 84.8 2.2 71 1-76 14-86 (87)
351 2ytc_A PRE-mRNA-splicing facto 99.0 1.5E-10 5E-15 83.8 2.8 62 2-77 21-84 (85)
352 2xnq_A Nuclear polyadenylated 99.0 2.6E-10 8.9E-15 85.0 4.2 62 2-79 31-94 (97)
353 2d9o_A DNAJ (HSP40) homolog, s 99.0 1E-09 3.4E-14 82.3 7.1 73 3-80 17-90 (100)
354 2dgt_A RNA-binding protein 30; 99.0 4.8E-10 1.6E-14 82.4 4.9 63 2-80 19-82 (92)
355 2cqh_A IGF-II mRNA-binding pro 99.0 2.7E-10 9.4E-15 83.9 3.5 66 1-80 16-83 (93)
356 1whx_A Hypothetical protein ri 99.0 2.9E-10 9.8E-15 86.9 3.5 64 2-79 19-83 (111)
357 2cpd_A Apobec-1 stimulating pr 99.0 3.6E-10 1.2E-14 84.3 3.9 64 1-80 23-89 (99)
358 2kvi_A Nuclear polyadenylated 99.0 2.5E-10 8.7E-15 84.7 2.9 56 18-80 26-83 (96)
359 2dnp_A RNA-binding protein 14; 99.0 4.2E-10 1.4E-14 82.4 4.0 64 1-80 17-81 (90)
360 1sjr_A Polypyrimidine tract-bi 98.9 6.6E-10 2.3E-14 90.4 5.4 69 1-81 54-125 (164)
361 1wf1_A RNA-binding protein RAL 98.9 2.3E-10 7.8E-15 87.2 2.4 57 16-79 41-99 (110)
362 2bz2_A Negative elongation fac 98.9 5.9E-10 2E-14 86.6 4.1 62 15-81 49-112 (121)
363 3v4m_A Splicing factor U2AF 65 98.9 2.6E-10 9E-15 86.3 1.7 64 15-78 27-95 (105)
364 1wf0_A TDP-43, TAR DNA-binding 98.9 2.3E-10 7.9E-15 83.4 1.1 58 18-80 20-78 (88)
365 2dit_A HIV TAT specific factor 98.9 6.8E-10 2.3E-14 84.9 3.7 61 17-80 40-102 (112)
366 2cq2_A Hypothetical protein LO 98.9 3.4E-10 1.1E-14 86.7 1.8 65 2-80 36-106 (114)
367 2e44_A Insulin-like growth fac 98.9 7.5E-10 2.6E-14 82.0 3.2 67 2-80 24-92 (96)
368 2e5i_A Heterogeneous nuclear r 98.8 2.8E-09 9.7E-14 82.9 5.1 61 16-81 38-103 (124)
369 3ue2_A Poly(U)-binding-splicin 98.8 6E-09 2E-13 80.5 6.0 62 17-78 39-107 (118)
370 2diu_A KIAA0430 protein; struc 98.8 4.2E-09 1.5E-13 77.2 4.4 64 2-80 18-84 (96)
371 3zzy_A Polypyrimidine tract-bi 98.8 3.7E-09 1.3E-13 82.8 4.4 63 15-81 40-107 (130)
372 1ufw_A Synaptojanin 2; RNP dom 98.8 6.8E-09 2.3E-13 75.8 5.2 72 140-219 13-93 (95)
373 3dxb_A Thioredoxin N-terminall 98.7 1.9E-08 6.5E-13 86.0 6.0 81 142-223 124-215 (222)
374 3s6e_A RNA-binding protein 39; 98.7 2.9E-08 9.8E-13 76.1 5.8 60 17-79 31-92 (114)
375 2l9w_A U4/U6 snRNA-associated- 98.6 2.4E-07 8.2E-12 69.0 8.0 72 140-217 19-96 (117)
376 3u1l_A PRE-mRNA-splicing facto 98.5 2.6E-08 8.8E-13 86.1 3.1 60 16-80 156-229 (240)
377 2dnr_A Synaptojanin-1; RRM dom 98.3 9.2E-07 3.1E-11 64.1 4.7 55 18-79 30-85 (91)
378 3dxb_A Thioredoxin N-terminall 98.2 1.9E-06 6.6E-11 73.4 7.1 62 17-78 143-211 (222)
379 3tht_A Alkylated DNA repair pr 98.2 3.7E-07 1.3E-11 83.0 2.1 58 5-67 21-81 (345)
380 1ufw_A Synaptojanin 2; RNP dom 98.1 1.8E-06 6E-11 63.0 3.0 52 18-76 39-91 (95)
381 2dhx_A Poly (ADP-ribose) polym 97.8 0.00055 1.9E-08 50.5 11.7 75 140-222 6-85 (104)
382 1owx_A Lupus LA protein, SS-B, 97.5 4.6E-05 1.6E-09 58.5 3.4 59 15-78 31-94 (121)
383 1whv_A Poly(A)-specific ribonu 97.5 0.00064 2.2E-08 49.5 8.4 55 140-203 14-68 (100)
384 1wey_A Calcipressin 1; structu 97.2 0.0017 5.8E-08 48.0 8.1 75 142-222 5-85 (104)
385 3p3d_A Nucleoporin 53; structu 97.1 0.00052 1.8E-08 52.9 5.1 81 141-222 6-100 (132)
386 3ctr_A Poly(A)-specific ribonu 96.9 0.00075 2.6E-08 49.3 4.0 52 143-203 7-58 (101)
387 1wwh_A Nucleoporin 35, nucleop 96.9 0.0039 1.3E-07 47.3 8.0 75 140-221 22-97 (119)
388 1uw4_A UPF3X; nonsense mediate 96.1 0.019 6.4E-07 41.5 7.0 65 143-208 2-70 (91)
389 1wwh_A Nucleoporin 35, nucleop 95.4 0.011 3.6E-07 44.9 3.4 37 44-80 60-97 (119)
390 2l9w_A U4/U6 snRNA-associated- 95.4 0.0086 2.9E-07 44.6 2.8 42 30-76 54-96 (117)
391 3pq1_A Poly(A) RNA polymerase; 94.1 0.028 9.7E-07 52.7 3.5 57 142-204 53-109 (464)
392 3p3d_A Nucleoporin 53; structu 93.3 0.027 9.3E-07 43.3 1.5 72 9-80 22-99 (132)
393 2dhx_A Poly (ADP-ribose) polym 93.1 0.1 3.5E-06 38.3 4.2 53 17-76 22-80 (104)
394 1whv_A Poly(A)-specific ribonu 92.8 0.17 5.9E-06 36.7 5.0 41 17-63 29-69 (100)
395 2l08_A Regulator of nonsense t 92.7 0.11 3.6E-06 37.9 3.8 65 140-208 7-78 (97)
396 3ctr_A Poly(A)-specific ribonu 90.5 0.16 5.6E-06 36.9 2.7 41 17-63 19-59 (101)
397 4e8u_A Putative uncharacterize 86.2 2.5 8.5E-05 33.9 7.3 59 142-203 12-82 (172)
398 3d45_A Poly(A)-specific ribonu 85.2 1.9 6.4E-05 40.9 7.3 53 141-202 439-491 (507)
399 1wey_A Calcipressin 1; structu 69.9 6.9 0.00024 28.6 4.7 56 18-78 25-82 (104)
400 4e8u_A Putative uncharacterize 60.7 8.8 0.0003 30.7 4.1 47 17-64 35-84 (172)
401 3pq1_A Poly(A) RNA polymerase; 53.5 5.6 0.00019 37.1 2.1 43 16-62 65-108 (464)
402 1vd2_A Protein kinase C, IOTA 41.2 59 0.002 22.8 5.4 55 17-76 32-88 (89)
403 3d45_A Poly(A)-specific ribonu 41.2 25 0.00085 33.1 4.5 42 17-64 453-494 (507)
404 2kvo_A Photosystem II reaction 33.6 30 0.001 25.7 2.9 32 22-54 5-39 (120)
405 1xn9_A 30S ribosomal protein S 31.6 45 0.0015 24.1 3.5 48 152-201 28-81 (101)
406 2v94_A RPS24, 30S ribosomal pr 28.2 46 0.0016 24.3 3.1 45 153-199 38-88 (107)
407 3u5c_Y RP50, 40S ribosomal pro 27.8 87 0.003 23.8 4.7 46 152-199 33-84 (135)
408 2kkc_A Sequestosome-1; P62, PB 25.6 1.7E+02 0.0057 21.0 5.7 43 17-64 48-91 (102)
409 1ywx_A 30S ribosomal protein S 25.5 49 0.0017 23.9 2.8 46 152-199 28-79 (102)
410 1wmh_B Partitioning defective- 24.8 70 0.0024 22.3 3.4 56 2-63 19-75 (86)
411 2g1d_A 30S ribosomal protein S 21.1 43 0.0015 24.0 1.8 43 153-197 30-78 (98)
412 2ktr_A Sequestosome-1; autopha 20.5 2.3E+02 0.008 20.8 5.7 44 16-64 62-106 (117)
413 3j21_T 50S ribosomal protein L 20.2 1.2E+02 0.0042 21.0 3.9 36 27-64 49-84 (86)
414 2xzm_P RPS24E; ribosome, trans 20.1 78 0.0027 24.5 3.1 46 152-199 31-82 (149)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2e-30 Score=219.08 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=130.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. +|.|+.++ +|+++|||||+|.++++|++||+.++..++|+.|.|..+..
T Consensus 21 Lp~~~te~~l~~~F~~~G~i~---------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 21 LSFETTDESLRSHFEQWGTLT---------DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCCCCCHHHHHHHHHhCCCEE---------EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 366677777666666665554 59999887 58999999999999999999999988999999999988543
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
..... . ........+|||+|||+++|+++|
T Consensus 92 ~~~~~------------------------------------~--------------~~~~~~~~~l~V~nLp~~~t~~~l 121 (196)
T 1l3k_A 92 REDSQ------------------------------------R--------------PGAHLTVKKIFVGGIKEDTEEHHL 121 (196)
T ss_dssp -------------------------------------------------------------CCSEEEEECCTTTCCHHHH
T ss_pred ccccc------------------------------------c--------------cccCCCcceEEEeCCCCCCCHHHH
Confidence 21100 0 001145578999999999999999
Q ss_pred HHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCcccc
Q psy10467 160 EKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFL 224 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~~~~ 224 (304)
+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+..++..|+|+.|.|.++.+++..
T Consensus 122 ~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 122 RDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-----
T ss_pred HHHHhcCCCeE-EEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHh
Confidence 99999999998 6999888 5899999999999999999999988999999999999998876543
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-30 Score=209.42 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=130.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..+|.|. +|.|+.+++|+++|||||+|.++++|++|++. ++..++|+.|.|..+...
T Consensus 9 p~~~t~~~l~~~f~~~G~i~---------~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 9 DKAITEDILKQYFQVGGPIA---------NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp ETTCCHHHHHHHHGGGSCEE---------EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCcCCHHHHHHHHHhcCCeE---------EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 66777777777776666555 59999999999999999999999999999955 559999999999884322
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q psy10467 81 SSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVE 160 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~ 160 (304)
.. .......+|||+|||+.+|+++|+
T Consensus 80 ~~------------------------------------------------------~~~~~~~~l~v~nl~~~~t~~~l~ 105 (166)
T 3md3_A 80 QQ------------------------------------------------------SSSDDTFNLFVGDLNVNVDDETLR 105 (166)
T ss_dssp CC------------------------------------------------------CCCTTCEEEEEESCCTTCCHHHHH
T ss_pred CC------------------------------------------------------CCCCCCceEEECCCCCCCCHHHHH
Confidence 10 011456789999999999999999
Q ss_pred HHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 161 KFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 161 ~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
++|++||.|. .+.++.+ .+|.++|+|||+|.+.++|.+|+ .+|+..|+|+.|.|.++.+
T Consensus 106 ~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 106 NAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHhccCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999998 6888888 78999999999999999999999 5799999999999998753
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.2e-29 Score=218.25 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=129.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++||++|..+|..+|.|. +|.|+.|+ +|+++|||||+|.++++|++||+.++ ..+.|+.|.+..+.
T Consensus 23 Lp~~~te~~L~~~F~~~G~I~---------~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 23 LHPDVTEAMLYEKFSPAGPIL---------SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHHhhCCEE---------EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 467777777777766666555 59999887 69999999999999999999998766 88999999888743
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
.... ... ....+|||+|||+++|+++
T Consensus 94 ~~~~------------------------------------------~~~------------~~~~~l~v~nl~~~~t~~~ 119 (213)
T 4f02_A 94 RDPS------------------------------------------LRK------------SGVGNIFIKNLDKSIDNKA 119 (213)
T ss_dssp CCTH------------------------------------------HHH------------HCTTEEEEESCCTTCCHHH
T ss_pred cccc------------------------------------------ccc------------cccccceECCcccccHHHH
Confidence 2210 000 2235799999999999999
Q ss_pred HHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 159 VEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
|+++|++||.|. .|.|+.+. +.++|||||+|.+.++|.+|| .+|+..|+|+.|.|.++.++
T Consensus 120 l~~~F~~~G~i~-~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 120 LYDTFSAFGNIL-SCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHGGGSCEE-EEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHhhcCCeE-EEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999998 68998875 448999999999999999999 67999999999999998765
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=5.1e-29 Score=213.54 Aligned_cols=166 Identities=15% Similarity=0.188 Sum_probs=129.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. +|.|+.++ +|+++|||||+|.++++|++||+. ++..++|+.|.|..+.
T Consensus 36 Lp~~~t~~~l~~~f~~~G~i~---------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 36 IYYELGEDTIRQAFAPFGPIK---------SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCCCCCHHHHHHHHHhCCCEE---------EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 356667776666666665555 59998887 799999999999999999999985 5599999999997743
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
..... .......... .....+|||+|||+++|+++
T Consensus 107 ~~~~~-------------------------------------~~~~~~~~~~--------~~~~~~l~v~nlp~~~t~~~ 141 (216)
T 2qfj_A 107 NIGQA-------------------------------------QPIIDQLAEE--------ARAFNRIYVASVHQDLSDDD 141 (216)
T ss_dssp CCGGG-------------------------------------HHHHHHHHHH--------HTTSCEEEEECCCTTCCHHH
T ss_pred Ccccc-------------------------------------chhhhhhhcc--------cCCCcEEEEeCCCCcCCHHH
Confidence 32110 0000000000 14567899999999999999
Q ss_pred HHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 159 VEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++..+
T Consensus 142 l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 142 IKSVFEAFGKIK-SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHTTSSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHhccCCee-EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 999999999998 6999888 68999999999999999999999 57999999999999998765
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=5.2e-30 Score=211.06 Aligned_cols=154 Identities=9% Similarity=0.173 Sum_probs=127.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|+.+|.|. +|.|+.++ +|+++|||||+|.++++|++||+. ...++|+.|.|..+..
T Consensus 11 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 11 LNWDTTEDNLREYFGKYGTVT---------DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp CCTTCCHHHHHHHHTTTCCEE---------EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCCCCCHHHHHHHHHhCCCEE---------EEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 466666666666666555444 59998886 699999999999999999999984 5788999888776321
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
. ... ....+|||+|||+++|+++|
T Consensus 81 ~------------------------------------------~~~--------------~~~~~l~V~nlp~~~t~~~l 104 (167)
T 2cjk_A 81 R------------------------------------------DEQ--------------DKTGKIFVGGIGPDVRPKEF 104 (167)
T ss_dssp H------------------------------------------HHH--------------HHCEEEEEEEECTTCCHHHH
T ss_pred h------------------------------------------hhc--------------cCCCeEEECCCCCCCCHHHH
Confidence 1 000 22357999999999999999
Q ss_pred HHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCc
Q psy10467 160 EKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~ 221 (304)
+++|++||.|. .+.++.+ .+|.++|||||+|.+.++|.+|+++++..|+|+.|.|.++.++
T Consensus 105 ~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 105 EEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHTTSCCS-EEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred HHHHHhCccEE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 99999999998 6888888 6899999999999999999999999999999999999998764
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=1.9e-28 Score=201.16 Aligned_cols=152 Identities=18% Similarity=0.250 Sum_probs=126.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. +|.++.++ +|+++|||||+|.++++|++||+. ++..++|+.|.|..+.
T Consensus 10 lp~~~~~~~l~~~f~~~G~i~---------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 10 LPQNMTQEEFRSLFGSIGEIE---------SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCTTCCHHHHHHHHHTTSCEE---------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 366677777666666655554 59999888 899999999999999999999985 5599999999998843
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
+... .....+|||+|||..+|+++
T Consensus 81 ~~~~--------------------------------------------------------~~~~~~l~v~nl~~~~t~~~ 104 (167)
T 1fxl_A 81 PSSA--------------------------------------------------------SIRDANLYVSGLPKTMTQKE 104 (167)
T ss_dssp CCCG--------------------------------------------------------GGTTCEEEEESCCTTCCHHH
T ss_pred CCcc--------------------------------------------------------cCCCCcEEECCCCCcCCHHH
Confidence 2210 03346799999999999999
Q ss_pred HHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeE--EEEEEc
Q psy10467 159 VEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRL--VTLVMS 218 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~--i~V~~~ 218 (304)
|+++|++||.|. .+.++.+ .+|.++|+|||+|.+.++|.+|+ .+|+..++|+. |.|.+|
T Consensus 105 l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 105 LEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEe-EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999998 5888888 58999999999999999999999 57999999975 777654
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.4e-28 Score=202.56 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=127.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. +|.++.++ +|+++|||||+|.++++|++|++. ++..++|+.|.|..+.
T Consensus 11 lp~~~~~~~l~~~f~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 11 LPQDMTDRELYALFRAIGPIN---------TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCTTCCHHHHHHHHHTTSCEE---------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCee---------EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 366677777666666655544 58888876 799999999999999999999975 5589999999998843
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
+.. ......+|||+|||..+|+++
T Consensus 82 ~~~--------------------------------------------------------~~~~~~~l~v~nl~~~~t~~~ 105 (168)
T 1b7f_A 82 PGG--------------------------------------------------------ESIKDTNLYVTNLPRTITDDQ 105 (168)
T ss_dssp CCS--------------------------------------------------------STTTTCEEEEESCCTTCCHHH
T ss_pred CCc--------------------------------------------------------ccCCCCCEEEeCCCCCCCHHH
Confidence 211 013457899999999999999
Q ss_pred HHHHhhcCCCccceEEEeeCC-CCCcccEEEEEecCHHHHHHHH-HhCCCccCC--eEEEEEEc
Q psy10467 159 VEKFLEGLEIVPNGITIPHDY-AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH--RLVTLVMS 218 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~~-~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V~~~ 218 (304)
|+++|++||.|. .+.++.+. +|+++|+|||+|.+.++|.+|+ .+|+..+.| ++|+|.+|
T Consensus 106 l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 106 LDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTSSSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhhhcCCcEE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999998 68888884 8999999999999999999999 589999987 99999875
No 8
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=3e-28 Score=218.75 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=122.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+|+++|+++|..+|..+|.|. +|.|+.+++| ++|||||+|.++++|++||++++..++|+.|.|..
T Consensus 49 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~---- 114 (292)
T 2ghp_A 49 LPKSYNQNKVYKYFKHCGPII---------HVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH---- 114 (292)
T ss_dssp ECTTCCHHHHHHHHGGGSCEE---------EEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE----
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE----
Confidence 367777777777777766555 5999998877 58999999999999999998666999999999877
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q psy10467 81 SSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVE 160 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~ 160 (304)
....+|||+|||+.+|+++|+
T Consensus 115 -----------------------------------------------------------~~~~~l~v~nlp~~~t~~~l~ 135 (292)
T 2ghp_A 115 -----------------------------------------------------------LTECTLWMTNFPPSYTQRNIR 135 (292)
T ss_dssp -----------------------------------------------------------CCSCEEEEECCCTTCCHHHHH
T ss_pred -----------------------------------------------------------CCCCEEEEECCCCCCCHHHHH
Confidence 234679999999999999999
Q ss_pred HHhhcCC-CccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEcCCc
Q psy10467 161 KFLEGLE-IVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 161 ~~F~~~g-~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~~~~ 221 (304)
++|+.|| .|. .|.++.+..|.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++.+.
T Consensus 136 ~~f~~~G~~i~-~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 136 DLLQDINVVAL-SIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp HHHHHTTCCCC-EEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHhCCCeE-EEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 9999999 988 6999988889999999999999999999995 8999999999999887653
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=5.3e-28 Score=200.18 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=122.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCC---CceeeEEEEeCCHHHHHHHHHHcC-CcCC---CceEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAG---RSSGEADVEFSSVDDAQRALQRHK-SNMG---DRYIE 73 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~G---r~~G~aFV~F~s~edA~~Al~~~~-~~i~---~r~I~ 73 (304)
+|+++|+++|..+|..+|.|. +|.|+.++.+ +++|||||+|.++++|++||+.++ ..+. ++.|.
T Consensus 11 Lp~~~te~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 11 VPRTWSEKDLRELFEQYGAVY---------EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCTTCCHHHHHHHHHTTSCEE---------EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCCHHHHHHHHHhCCCEE---------EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 467777777776666665555 5999988865 899999999999999999998655 4443 34666
Q ss_pred EEecCCCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCC
Q psy10467 74 LYMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYE 153 (304)
Q Consensus 74 V~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~ 153 (304)
+..+.... .......+|||+|||++
T Consensus 82 ~~~~~~~~-------------------------------------------------------~~~~~~~~l~v~nl~~~ 106 (175)
T 3nmr_A 82 MKPADSEK-------------------------------------------------------NNAVEDRKLFIGMISKK 106 (175)
T ss_dssp EEECGGGC-------------------------------------------------------CSCGGGSEEEEESCCTT
T ss_pred Eccccccc-------------------------------------------------------cccCCCCeEEEcCCCCc
Confidence 65521110 00134568999999999
Q ss_pred CCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC---CeEEEEEEcC
Q psy10467 154 CKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG---HRLVTLVMSG 219 (304)
Q Consensus 154 ~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~---gr~i~V~~~~ 219 (304)
+|+++|+++|++||.|. .|.++.+.+|+++|||||+|.+.++|.+|+ .+|+..+. +++|.|.++.
T Consensus 107 ~t~~~l~~~F~~~G~i~-~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 107 CTENDIRVMFSSFGQIE-ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHHHhCCCEE-EEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999998 699999989999999999999999999999 67987665 4999998863
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=3.1e-28 Score=205.90 Aligned_cols=179 Identities=13% Similarity=0.176 Sum_probs=135.7
Q ss_pred CCcccccccccccccchhhHHhhcCC-C-CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKP-I-VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~-~-~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|..+... . .+.++.+ ++++|||||+|.++++|++||.+++..++|+.|.|..+.
T Consensus 12 Lp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCC
T ss_pred CCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCC
Confidence 58899999999999999877753211 0 1233333 578999999999999999999656699999999998865
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
............ . .... ............+|||+|||+.+|+++
T Consensus 87 ~~~~~~~~~~~~---------~------------------~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~ 130 (198)
T 2yh0_A 87 DYQPLPGMSENP---------S------------------VYVP---------GVVSTVVPDSAHKLFIGGLPNYLNDDQ 130 (198)
T ss_dssp CCCCCCCSSSCS---------S------------------CCCT---------TSSCCCSSCCCCEEEEECCCTTCCHHH
T ss_pred CCCCCCCCcCCC---------c------------------CCCC---------CCccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 432111000000 0 0000 000111125678999999999999999
Q ss_pred HHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 159 VEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
|+++|++||.|. .|.++.+ .+|.++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++.+.
T Consensus 131 l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 131 VKELLTSFGPLK-AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp HHHHHHTBSCEE-EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHHHcCCcc-EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 999999999998 6999988 59999999999999999999999 57999999999999998765
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=3.3e-28 Score=202.00 Aligned_cols=153 Identities=20% Similarity=0.321 Sum_probs=127.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+|+++|+++|..+|..++.+.. +.+....+|+++|||||+|.++++|++||++++..++|+.|.|..+...
T Consensus 21 Lp~~~t~~~l~~~f~~~g~~~~---------~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 21 LNPNKSVAELKVAISELFAKND---------LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT---------CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCS
T ss_pred CCCCCCHHHHHHHHHHhCCcce---------EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCc
Confidence 4788899999988888887764 3333334688999999999999999999986779999999999885432
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q psy10467 81 SSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVE 160 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~ 160 (304)
... ......+|||+|||+++|+++|+
T Consensus 92 ~~~------------------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~ 117 (175)
T 1fje_B 92 DSK------------------------------------------------------KVRAARTLLAKNLSFNITEDELK 117 (175)
T ss_dssp SCS------------------------------------------------------TTGGGGEEEEESCCSSCCHHHHH
T ss_pred ccc------------------------------------------------------ccccCCEEEEeCCCCCCCHHHHH
Confidence 100 01345789999999999999999
Q ss_pred HHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 161 KFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 161 ~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
++|++||.|. ++ ..+|.++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++.++
T Consensus 118 ~~F~~~g~v~----~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 118 EVFEDALEIR----LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHCTTCSEEE----EE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHhcCeEE----Ee-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999998664 33 778999999999999999999999 57999999999999998754
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=5.3e-28 Score=199.95 Aligned_cols=157 Identities=13% Similarity=0.207 Sum_probs=128.5
Q ss_pred CCcccccccccccccchhhHHhhcCCC--CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPI--VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~--~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|+.+|.|...-..- .+.++.+ ++++|||||+|.++++|++||.+++..++|+.|.|..+.
T Consensus 12 Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-----ETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCS
T ss_pred CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-----cCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCc
Confidence 588999999999999987665321100 2233444 467899999999999999999656699999999998732
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKED 158 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~d 158 (304)
.... .....+|||+|||..+|+++
T Consensus 87 ~~~~--------------------------------------------------------~~~~~~l~v~nlp~~~t~~~ 110 (172)
T 2g4b_A 87 DYQP--------------------------------------------------------LPGAHKLFIGGLPNYLNDDQ 110 (172)
T ss_dssp SCCC--------------------------------------------------------CTTTTCEEEECCCTTCCHHH
T ss_pred ccCC--------------------------------------------------------CCCCCEEEEEcCCCcCCHHH
Confidence 2110 02356799999999999999
Q ss_pred HHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 159 VEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 159 l~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
|+++|++||.|. .+.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+|+
T Consensus 111 l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 111 VKELLTSFGPLK-AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHTTSCEE-EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHhcCCce-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999998 6999988 59999999999999999999999 579999999999998874
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=7.3e-27 Score=208.87 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=131.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. .|.++.++ +|+++|||||+|.+.++|++|+.. ++..++|+.|.|..+.
T Consensus 103 lp~~~t~~~l~~~f~~~G~i~---------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 103 LPPSLTQQQFEELVRPFGSLE---------RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcCCHHHHHHHHHhcCCee---------EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 356666666666655555444 58888876 799999999999999999999965 5599999999998843
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCC-CCHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYE-CKKE 157 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~-~t~~ 157 (304)
.... ........+|||+|||++ +|++
T Consensus 174 ~~~~-----------------------------------------------------~~~~~~~~~l~v~nlp~~~~~~~ 200 (284)
T 3smz_A 174 AGQL-----------------------------------------------------TPALLHSRCLCVDRLPPGFNDVD 200 (284)
T ss_dssp GGGC-----------------------------------------------------CTTTTSCSEEEEECCCTTCCCHH
T ss_pred CCCC-----------------------------------------------------CcccCCccEEEEecCCcccCCHH
Confidence 2210 000145678999999999 5999
Q ss_pred HHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCccc
Q psy10467 158 DVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 158 dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~~~ 223 (304)
+|+++|+.||.|. .|.++.+.+|+++|+|||+|.+.++|.+|+ .+|+..|+|+.|.|.++.+...
T Consensus 201 ~l~~~f~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 201 ALCRALSAVHSPT-FCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTCSSSCCS-EEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHhhCCCCeE-EEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999998 699999999999999999999999999999 5799999999999999987643
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.9e-26 Score=206.11 Aligned_cols=136 Identities=14% Similarity=0.236 Sum_probs=116.3
Q ss_pred hhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCCCccccCCCCCCCCCCC
Q psy10467 18 LLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTSSKEANGRGTGGFGGV 96 (304)
Q Consensus 18 ~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~ 96 (304)
.+|+++|+.+|+..|.+ |+++|||||+|.++++|++||+. ++..++|+.|.|..+
T Consensus 37 ~~l~~~F~~~Gi~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~------------------- 92 (284)
T 3smz_A 37 QEVHDLLSDYELKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ------------------- 92 (284)
T ss_dssp HHHHHHTTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-------------------
T ss_pred HHHHHHHHHcCCEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-------------------
Confidence 34455566566545666 67889999999999999999976 558899999998761
Q ss_pred CCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEe
Q psy10467 97 KSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIP 176 (304)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~ 176 (304)
....+|||+|||+++|+++|+++|+.||.|. .+.++
T Consensus 93 -------------------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~ 128 (284)
T 3smz_A 93 -------------------------------------------PTDALLCVANLPPSLTQQQFEELVRPFGSLE-RCFLV 128 (284)
T ss_dssp -------------------------------------------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEE
T ss_pred -------------------------------------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCee-EEEEE
Confidence 2346799999999999999999999999998 68888
Q ss_pred eC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 177 HD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 177 ~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++.+.
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 129 YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 87 68999999999999999999999 78999999999999987653
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=8.3e-27 Score=209.32 Aligned_cols=162 Identities=16% Similarity=0.218 Sum_probs=125.4
Q ss_pred CCcccccccccccccchh-hHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCL-LCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~-~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+| .|. .|.|+.++.|+++|||||+|.+.++|++||.. ++..++|+.|.|..+.
T Consensus 125 lp~~~t~~~l~~~f~~~G~~i~---------~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQDINVVAL---------SIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCC---------EEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHHHhCCCeE---------EEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 466777777776666665 444 59999888899999999999999999999985 5599999999998854
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCC-CCHH
Q psy10467 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYE-CKKE 157 (304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~-~t~~ 157 (304)
+..... .. ........+|||+|||++ +|++
T Consensus 196 ~~~~~~------------------------------------~~-------------~~~~~~~~~l~v~nlp~~~~t~~ 226 (292)
T 2ghp_A 196 PLEKSK------------------------------------RT-------------DSATLEGREIMIRNLSTELLDEN 226 (292)
T ss_dssp CC----------------------------------------------------------CCTTTEEEEEEECTTTCCHH
T ss_pred CCcccc------------------------------------cc-------------cccCCCCceEEEECCCcccCCHH
Confidence 332100 00 001255688999999999 9999
Q ss_pred HHHHHhhcCCCccceEEEeeCCC--CCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCCc
Q psy10467 158 DVEKFLEGLEIVPNGITIPHDYA--GRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 158 dl~~~F~~~g~v~~~v~~~~~~~--g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~~ 221 (304)
+|+++|+.||.|. .|.++.+.+ |.++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++.++
T Consensus 227 ~l~~~F~~~G~v~-~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 227 LLRESFEGFGSIE-KINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHGGGSCEE-EEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHhccCCee-EEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 9999999999998 699988865 99999999999999999999966999999999999998764
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=2.8e-25 Score=196.71 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=120.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. +|.|. +++|||||+|.+.++|++||.. ++..++|+.|.|..+
T Consensus 30 Lp~~~te~~l~~~F~~~G~i~---------~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a-- 93 (261)
T 3sde_A 30 LPTDITEEDFKRLFERYGEPS---------EVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA-- 93 (261)
T ss_dssp CCTTCCHHHHHHHTGGGCCCS---------EEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC--
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec--
Confidence 356666666666665555444 57774 4679999999999999999985 559999999999872
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
....+|||+|||+.+|+++|
T Consensus 94 ------------------------------------------------------------~~~~~l~v~nl~~~~t~~~l 113 (261)
T 3sde_A 94 ------------------------------------------------------------THGAALTVKNLSPVVSNELL 113 (261)
T ss_dssp ------------------------------------------------------------CCSSEEEEESCCTTCCHHHH
T ss_pred ------------------------------------------------------------ccCCcccccCCCCCCCHHHH
Confidence 22357999999999999999
Q ss_pred HHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-Hh-CCCccC---CeEEEEEEcCCcc
Q psy10467 160 EKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LR-HKEKIG---HRLVTLVMSGAQW 222 (304)
Q Consensus 160 ~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~-~~~~~~---gr~i~V~~~~~~~ 222 (304)
+++|+.||.|. .|.++.+.+|+++|||||+|.+.++|.+|+ .+ ++..+. +++|.|.++....
T Consensus 114 ~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 114 EQAFSQFGPVE-KAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHGGGSCEE-EEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHhcCCeE-EEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999999998 699999999999999999999999999999 56 566655 9999999987653
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=1.4e-24 Score=193.89 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC-CeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG-HRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~-gr~i~V~~ 217 (304)
....+|||+|||..+|+++|+++|+.||.|. .|.++.+. +|||||+|.+.++|.+|+ .+|+..|+ |+.|+|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~-~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFK-EVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE-EEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 4578999999999999999999999999998 58887543 589999999999999999 57999999 99999998
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 75
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=5.1e-25 Score=188.24 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=119.2
Q ss_pred cccccccccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccc
Q psy10467 7 VIDILIHITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKE 84 (304)
Q Consensus 7 e~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~ 84 (304)
+..|-.+-.++.+|+++|+.|| +.+|.|+.+ ++|||||+|.++++|++||+.++ ..+.|+.|.|..+......+
T Consensus 9 V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p 84 (205)
T 3tyt_A 9 VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMP 84 (205)
T ss_dssp EECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCC
T ss_pred EeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCC
Confidence 3333323334445556666664 356888764 47999999999999999998655 99999999999865433211
Q ss_pred cCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh
Q psy10467 85 ANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLE 164 (304)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~ 164 (304)
.... ...... + ....|... ...+..... . ... ........+|||+|||+++|+++|+++|+
T Consensus 85 ~~~~---~~~~~~--~---~~~~~~~~---~~~r~~~~~--~---~~~---~~~~~p~~~l~v~NLp~~~t~~~L~~~F~ 145 (205)
T 3tyt_A 85 GQSY---GLEDGS--C---SYKDFSES---RNNRFSTPE--Q---AAK---NRIQHPSNVLHFFNAPLEVTEENFFEICD 145 (205)
T ss_dssp CSCC---BCTTSC--B---SEEECTTC---TTCSCSSHH--H---HTT---SCCCCCCSEEEEEEECTTCCHHHHHHHHH
T ss_pred Cccc---ccccCC--c---cccccCCC---ccccccCcc--c---ccc---cccCCCcceEEEeCCCCCCCHHHHHHHHH
Confidence 0000 000000 0 00000000 000000000 0 000 00114567899999999999999999999
Q ss_pred cCCCc--cceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCe----EEEEEEc
Q psy10467 165 GLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHR----LVTLVMS 218 (304)
Q Consensus 165 ~~g~v--~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr----~i~V~~~ 218 (304)
+||.| . .|.++.+. |.++|+|||+|.+.++|.+|| .+|+..|.|+ ++.|.+|
T Consensus 146 ~~G~v~~~-~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 146 ELGVKRPT-SVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHTCCCCS-EEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred hcCCcceE-EEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99988 5 58877665 566799999999999999999 7899999887 5666543
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=9.2e-25 Score=189.64 Aligned_cols=181 Identities=15% Similarity=0.172 Sum_probs=122.9
Q ss_pred Cc-ccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RF-SFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~-~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+ ++|+++|..+|..+|.|. +|.|+.++ +|||||+|.++++|++||+. ++..++|+.|.|..+..
T Consensus 43 p~~~~te~~L~~~F~~~G~i~---------~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 43 NPERVTPQSLFILFGVYGDVQ---------RVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CTTTCCHHHHHHHHHHHTCEE---------EEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CcccCCHHHHHHHHHhCCCeE---------EEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 45 666666666666665554 58888765 78999999999999999975 55899999999988654
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q psy10467 80 TSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDV 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl 159 (304)
............. .. ...|.+.. ..+..... ............+|||+|||..+|+++|
T Consensus 110 ~~~~~~~~~~~~~--~~--------~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~l~V~nlp~~~t~~~l 168 (229)
T 2adc_A 110 QNVQLPREGQEDQ--GL--------TKDYGNSP---LHRFKKPG--------SKNFQNIFPPSATLHLSNIPPSVSEEDL 168 (229)
T ss_dssp CCCCCCCSSSSTT--TT--------EEECTTCS---SCCCCSTT--------SGGGTTCCCSCSEEEEECCCTTCCHHHH
T ss_pred ccccCcccccccc--cc--------ccccccCc---ccccCCcc--------ccccccCCCCCCEEEEeCCCccCCHHHH
Confidence 4221100000000 00 00000000 00000000 0000111245789999999999999999
Q ss_pred HHHhhcCC-CccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC-CeEEEEEEcCCc
Q psy10467 160 EKFLEGLE-IVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG-HRLVTLVMSGAQ 221 (304)
Q Consensus 160 ~~~F~~~g-~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~-gr~i~V~~~~~~ 221 (304)
+++|+.|| .|. .|.++.+ .+|+|||+|.+.++|.+|+ .+|+..|+ |+.|.|.++.++
T Consensus 169 ~~~f~~~G~~i~-~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 169 KVLFSSNGGVVK-GFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHTTSCCEE-EEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHcCCCee-EEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999 887 5777643 4689999999999999999 58999999 999999998753
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=5.3e-25 Score=186.43 Aligned_cols=174 Identities=15% Similarity=0.142 Sum_probs=117.2
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCCCccccCCCCCCCCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTSSKEANGRGTGGFGG 95 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~ 95 (304)
.+|+++|+.+| +.+|.|+.++ +|||||+|.++++|++||+. ++..++|+.|.|..+.............. .+.
T Consensus 19 ~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~-~~~ 93 (198)
T 1qm9_A 19 QSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQED-QGL 93 (198)
T ss_dssp HHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSS-SSC
T ss_pred HHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCcc-ccc
Confidence 44445555553 3568888764 78999999999999999985 55899999999988665432110000000 000
Q ss_pred CCCCCCCCCccchhhhHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCC-CccceEE
Q psy10467 96 VKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLE-IVPNGIT 174 (304)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g-~v~~~v~ 174 (304)
...|.. ... ...................+|||+|||..+|+++|+++|+.|| .|. .|.
T Consensus 94 ---------~~~~~~--------~~~---~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~-~v~ 152 (198)
T 1qm9_A 94 ---------TKDYGN--------SPL---HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK-GFK 152 (198)
T ss_dssp ---------EEESSC--------CCT---TSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC-EEE
T ss_pred ---------cccccC--------Cch---hhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce-EEE
Confidence 000000 000 0000000000111124578999999999999999999999999 887 588
Q ss_pred EeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC-CeEEEEEEcCCc
Q psy10467 175 IPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG-HRLVTLVMSGAQ 221 (304)
Q Consensus 175 ~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~-gr~i~V~~~~~~ 221 (304)
++.+ .+|+|||+|.+.++|.+|+ .+|+..++ |+.|.|.++.++
T Consensus 153 i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 153 FFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7653 3689999999999999999 57999999 999999998753
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=1.9e-23 Score=170.97 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=106.6
Q ss_pred EEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCccccCCCCCCCCCCCCCCCCCCCccchhh
Q psy10467 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQ 110 (304)
Q Consensus 32 i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (304)
+.|+.+.. +++|||||+|.++++|++||+.++ ....+..+.+...........
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 56 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------------------------- 56 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------------------------
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------------------------
Confidence 55665554 699999999999999999997755 322222222221100000000
Q ss_pred hHHHHHhhhcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEE
Q psy10467 111 FLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYI 189 (304)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV 189 (304)
...............+|||+|||+++|+++|+++|++||.|. .|.|+.+ .+|+++|||||
T Consensus 57 ------------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~-~~~i~~~~~~g~~~g~afV 117 (158)
T 2kn4_A 57 ------------------GSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFV 117 (158)
T ss_dssp ------------------CCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEECCCCSSCTTSCCEEEE
T ss_pred ------------------cccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecCCCCccceEEEE
Confidence 000000011124568999999999999999999999999998 6999888 58999999999
Q ss_pred EecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 190 QFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 190 ~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
+|.+.++|++|| .+|+..|+|+.|.|.++.+.
T Consensus 118 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 118 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp EESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999 57999999999999998764
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=3e-20 Score=150.73 Aligned_cols=135 Identities=13% Similarity=0.165 Sum_probs=105.2
Q ss_pred CceeeEEEEeCCHHHHHHHHHHc-C-CcCCCceEEEEecCCCCccccCCCCCCCCCCCCCCCCCCCccchhhhHHHHHhh
Q psy10467 41 RSSGEADVEFSSVDDAQRALQRH-K-SNMGDRYIELYMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRR 118 (304)
Q Consensus 41 r~~G~aFV~F~s~edA~~Al~~~-~-~~i~~r~I~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (304)
..+|+++|+|.+.++|++|++.+ + ..++| .|.+..+............
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~----------------------------- 60 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH----------------------------- 60 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-----------------------------
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-----------------------------
Confidence 57899999999999999999776 5 88889 8888765432211100000
Q ss_pred hcchhhhHHHhhcCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHH
Q psy10467 119 AKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAE 198 (304)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~ 198 (304)
.............++|||+|||+++|+++|+++|++||.|. .|.++.+ ++|||||+|.+.++|.
T Consensus 61 -----------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~ 124 (150)
T 2i2y_A 61 -----------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLR-SVWVARN----PPGFAFVEFEDPRDAA 124 (150)
T ss_dssp -----------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEE-EEEECSS----SCSEEEEEESSHHHHH
T ss_pred -----------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEeeC----CCcEEEEEECCHHHHH
Confidence 00000011125678999999999999999999999999998 6888875 6899999999999999
Q ss_pred HHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 199 KAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 199 ~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
+|+ .+|+..|+|+.|.|.++.++
T Consensus 125 ~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 125 DAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHcCCCEECCeEEEEEEcCCC
Confidence 999 58999999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3.6e-20 Score=143.63 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
..+|||+|||+++|+++|+++|++||.|. .|.|+.+. +.++|||||+|.+.++|++|| .+|+..|+|+.|.|..+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~-~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE-EEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 45799999999999999999999999998 69998875 458999999999999999999 6799999999999988764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=7.8e-20 Score=137.92 Aligned_cols=80 Identities=14% Similarity=0.331 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..+.+|||+|||+++|+++|+++|++||.|. .|.++.| .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVE-SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999998 6999988 68999999999999999999999 6799999999999999
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
|.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 865
No 25
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.4e-20 Score=139.59 Aligned_cols=86 Identities=48% Similarity=0.877 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
....+|||+|||+++|++||+++|++||.|.+.|.|+.+.+|+++|||||+|.+.++|++||.+|+..|+||.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 56689999999999999999999999999974488888899999999999999999999999779999999999999998
Q ss_pred CccccC
Q psy10467 220 AQWFLS 225 (304)
Q Consensus 220 ~~~~~~ 225 (304)
..++..
T Consensus 93 ~~~~~~ 98 (104)
T 1wg5_A 93 RAEVRT 98 (104)
T ss_dssp TTTSCC
T ss_pred HHHHHH
Confidence 776544
No 26
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=138.05 Aligned_cols=81 Identities=28% Similarity=0.534 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
....+|||+|||+++|++||+++|++||++ .|.|+.+.+|+++|||||+|.+.++|++||.+|+..|+||.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 566899999999999999999999999965 499999999999999999999999999999889999999999999987
Q ss_pred Ccc
Q psy10467 220 AQW 222 (304)
Q Consensus 220 ~~~ 222 (304)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 27
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-20 Score=144.17 Aligned_cols=85 Identities=32% Similarity=0.468 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCcc---ceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVP---NGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~---~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~ 216 (304)
....+|||+|||+++|++||+++|++||.|. ..|.|+.+.+|+++|||||+|.+.++|++||.+|+..|+||.|+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4568899999999999999999999999752 3599999999999999999999999999999879999999999999
Q ss_pred EcCCcccc
Q psy10467 217 MSGAQWFL 224 (304)
Q Consensus 217 ~~~~~~~~ 224 (304)
.+.++++.
T Consensus 101 ~a~~~e~~ 108 (123)
T 2dha_A 101 RSTAAEVQ 108 (123)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99877654
No 28
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-19 Score=141.04 Aligned_cols=84 Identities=29% Similarity=0.552 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC---ccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEI---VPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~---v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~ 216 (304)
...++|||+|||+++|+++|+++|+.||. |. .|.|+.+.+|+++|||||+|.+.++|++||.+|+..|+||.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA-GVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG-GEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce-eEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 56789999999999999999999999998 66 599999988999999999999999999999999999999999999
Q ss_pred EcCCcccc
Q psy10467 217 MSGAQWFL 224 (304)
Q Consensus 217 ~~~~~~~~ 224 (304)
.+...++.
T Consensus 94 ~a~~~~~~ 101 (118)
T 2db1_A 94 KSHRTEMD 101 (118)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99877643
No 29
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=138.21 Aligned_cols=81 Identities=23% Similarity=0.472 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
...+|||+|||+++|++||+++|++| .|. .|.|+.+.+|+++|||||+|.+.++|++||.+|+..|+||.|+|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVD-AVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCC-EEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-Cee-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 34689999999999999999999999 565 5999999889999999999999999999999999999999999999887
Q ss_pred ccc
Q psy10467 221 QWF 223 (304)
Q Consensus 221 ~~~ 223 (304)
.+.
T Consensus 93 ~~~ 95 (109)
T 2dnn_A 93 RQW 95 (109)
T ss_dssp HHH
T ss_pred cch
Confidence 654
No 30
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=139.98 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCc-cceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIV-PNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v-~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|+.||.| . .|.|+.+.+|+++|||||+|.+.++|++||.+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDEN-AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCST-TEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCC-eEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 567899999999999999999999999999 6 69999999999999999999999999999977999999999999999
Q ss_pred CCcccc
Q psy10467 219 GAQWFL 224 (304)
Q Consensus 219 ~~~~~~ 224 (304)
..+++.
T Consensus 92 ~~~~~~ 97 (114)
T 2cpy_A 92 TLEDMR 97 (114)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 877543
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=134.27 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-h-CCCccCCeEEEEEEc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLE-IVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-R-HKEKIGHRLVTLVMS 218 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g-~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~-~~~~~~gr~i~V~~~ 218 (304)
.+|||+|||+++|++||+++|++|| .|. .|+|+.| .+|+++|||||+|.+.++|++||+ + ++..|+|+.|.|..+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~-~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAR-EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCS-BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeE-EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 5799999999999999999999999 687 5999888 689999999999999999999995 4 567899999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=135.08 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.| .+|+++|||||+|++.++|++|+ .+|+..|+|+.|.|..
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVE-EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999998 6999988 57999999999999999999999 6799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 33
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=8.4e-20 Score=139.65 Aligned_cols=84 Identities=30% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC---ccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEI---VPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~---v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~ 216 (304)
...++|||+|||+++|++||+++|+.||. |. .|.|+.+..|+++|||||+|.+.++|++||.+|+..|+||.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN-GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT-TEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc-eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 67789999999999999999999999988 76 599999977999999999999999999999999999999999999
Q ss_pred EcCCcccc
Q psy10467 217 MSGAQWFL 224 (304)
Q Consensus 217 ~~~~~~~~ 224 (304)
.+.+.++.
T Consensus 88 ~a~~~~~~ 95 (107)
T 2lmi_A 88 EINNEDVD 95 (107)
T ss_dssp ECCHHHHH
T ss_pred ECCHHHHH
Confidence 99876543
No 34
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=1e-19 Score=142.97 Aligned_cols=85 Identities=48% Similarity=0.839 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
....+|||+|||+++|++||+++|++|+++.+.|.|+.|.+|+++|||||+|.+.++|++||.+++..|+||.|+|..+.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 55688999999999999999999999976632489999978999999999999999999999888899999999999998
Q ss_pred Ccccc
Q psy10467 220 AQWFL 224 (304)
Q Consensus 220 ~~~~~ 224 (304)
++++.
T Consensus 120 ~~e~~ 124 (126)
T 2hgm_A 120 QEEVR 124 (126)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 77654
No 35
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=3.3e-19 Score=142.10 Aligned_cols=83 Identities=28% Similarity=0.559 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC---ccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEI---VPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~---v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~ 216 (304)
....+|||+|||+++|++||+++|++||. |. .|.|+.+.+|+++|||||+|.+.++|++||.+|+..|+||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~-~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA-GVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST-TEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 56789999999999999999999999998 66 599999977999999999999999999999999999999999999
Q ss_pred EcCCccc
Q psy10467 217 MSGAQWF 223 (304)
Q Consensus 217 ~~~~~~~ 223 (304)
.+...++
T Consensus 121 ~a~~~e~ 127 (136)
T 2hgl_A 121 KSHRTEM 127 (136)
T ss_dssp ECCHHHH
T ss_pred ECChHHH
Confidence 9987654
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=133.76 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+++|+++|+++|++||.|. .|.|+.+.+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS-EEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5568899999999999999999999999998 699999889999999999999999999999 57999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=130.68 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC--ccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCC----ccCCe
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEI--VPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKE----KIGHR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~--v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~----~~~gr 211 (304)
....+|||+|||+++|+++|+++|++||. +. .|+++.| .+|+++|||||+|.+.++|.+|+ .+|+. .|+||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~-~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVN-NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGG-GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEE-EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 56678999999999999999999999995 44 4889888 68999999999999999999999 56876 58999
Q ss_pred EEEEEEcCC
Q psy10467 212 LVTLVMSGA 220 (304)
Q Consensus 212 ~i~V~~~~~ 220 (304)
.|.|.+|..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=128.92 Aligned_cols=82 Identities=17% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|+.+|+..|+|+.|.|..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVT-EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEE-EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999998 6999888 6799999999999999999999999999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8653
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=5.1e-19 Score=130.93 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--CccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLE--IVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g--~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
.+|||+|||+++|+++|+++|++|| .|. .+.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~-~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC-CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE-EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4699999999999999999999999 887 5999988 69999999999999999999999 68999999999999887
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 81 ~~~ 83 (90)
T 3p5t_L 81 NKL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 765
No 40
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=125.95 Aligned_cols=80 Identities=24% Similarity=0.440 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
...++|||+|||+++|+++|+++|++| .|. .|.|+.+.+|+++|||||+|.+.++|.+||.+|+..|+|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cce-EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 567899999999999999999999999 776 599999999999999999999999999999999999999999999987
Q ss_pred Cc
Q psy10467 220 AQ 221 (304)
Q Consensus 220 ~~ 221 (304)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=127.59 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC-CCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY-AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~-~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++||.|. .|.++.+. +|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 5678999999999999999999999999998 68988885 9999999999999999999999 7799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 88764
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=127.05 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceE-EEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGI-TIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v-~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~ 216 (304)
...++|||+|||+++|+++|+++|++||.|. .+ .|+.+ .+|+++|||||+|.+.++|++|+. +|+..|+|+.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBS-SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 5578999999999999999999999999998 47 89888 789999999999999999999995 79999999999999
Q ss_pred EcCCcc
Q psy10467 217 MSGAQW 222 (304)
Q Consensus 217 ~~~~~~ 222 (304)
++.++.
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 987653
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=4e-18 Score=123.78 Aligned_cols=78 Identities=12% Similarity=0.228 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
.+|||+|||+++|+++|+++|++||.|. .+.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5799999999999999999999999998 6899888 78999999999999999999999 5799999999999999876
Q ss_pred c
Q psy10467 221 Q 221 (304)
Q Consensus 221 ~ 221 (304)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.5e-18 Score=128.07 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCC-CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 5678899999999999999999999999998 5999888 78999999999999999999999 6799999999999999
Q ss_pred cCCccc
Q psy10467 218 SGAQWF 223 (304)
Q Consensus 218 ~~~~~~ 223 (304)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877543
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=126.15 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||..+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKID-NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4568999999999999999999999999998 6888888 57999999999999999999999 5799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.++
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8765
No 46
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.9e-19 Score=137.19 Aligned_cols=84 Identities=29% Similarity=0.554 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
....+|||+|||+++|+++|+++|+.||.|.+.+.+..+.+|+++|||||+|.+.++|.+||.+|+..|+|+.|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 56689999999999999999999999999985456666689999999999999999999999999999999999999998
Q ss_pred Cccc
Q psy10467 220 AQWF 223 (304)
Q Consensus 220 ~~~~ 223 (304)
.+++
T Consensus 103 ~~~~ 106 (124)
T 1wel_A 103 KKGM 106 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 47
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=128.44 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+.+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVV-RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 5568899999999999999999999999998 699999988999999999999999999999 57999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 654
No 48
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=4.3e-18 Score=124.85 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+.+++..|+|+.|.|..|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV-DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5678999999999999999999999999998 6999888 6799999999999999999999988999999999999864
No 49
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=1.6e-17 Score=128.29 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|+.||.|. .|.|+.+ .+|+++|||||+|.+.++|++|| .+|+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 6678999999999999999999999999998 6999988 58999999999999999999999 5799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+....
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87653
No 50
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=132.05 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+.+|+++|||||+|.+.++|.+||.+|+..|+|+.|.|..+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~-~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEE-EEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEE-EEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4557899999999999999999999999998 699999977999999999999999999999999999999999998765
Q ss_pred C
Q psy10467 220 A 220 (304)
Q Consensus 220 ~ 220 (304)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=127.16 Aligned_cols=81 Identities=21% Similarity=0.488 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.++.+.+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVK-DLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5568899999999999999999999999998 699999999999999999999999999999 67999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=127.47 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+ +|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTIT-SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEE-EEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 5678899999999999999999999999998 6999988 9999999999999999999999 57999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8754
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=124.56 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||.++|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 4567899999999999999999999999998 6999988 68999999999999999999999 5799999999999999
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
+.+
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 865
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=9.9e-18 Score=127.01 Aligned_cols=80 Identities=15% Similarity=0.373 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|++|| |. .|.|+.+ .+|+++|||||+|.+.++|++||.+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR-SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce-EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 5678999999999999999999999997 66 5999988 5799999999999999999999988999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=127.84 Aligned_cols=82 Identities=18% Similarity=0.345 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5678999999999999999999999999998 6999888 68999999999999999999999 5799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.+..
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
No 56
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5e-19 Score=141.50 Aligned_cols=82 Identities=26% Similarity=0.497 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
...++|||+|||+++|++||+++|++||+ . .|.|+.|.+|+++|||||+|++.++|++||.+|+..|+||.|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi-~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLNP-V-RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCCC-S-EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-e-EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 55678999999999999999999999994 4 599999988999999999999999999999889999999999999988
Q ss_pred Cccc
Q psy10467 220 AQWF 223 (304)
Q Consensus 220 ~~~~ 223 (304)
..+.
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 57
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.1e-17 Score=129.41 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|+.||.|. .|.|+.+ .+|+++|||||+|.+.++|++|| .+|+..|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 5567899999999999999999999999998 6999988 48999999999999999999999 7799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87654
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.9e-18 Score=126.91 Aligned_cols=82 Identities=15% Similarity=0.351 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+ .+++++|||||+|.+.++|.+|+ .+|+..|+|+.|+|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS-EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCC-EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 6678999999999999999999999999998 6999887 68899999999999999999999 7799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 87653
No 59
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.3e-17 Score=126.66 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCC---eEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH---RLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g---r~i~V 215 (304)
....+|||+|||+.+|+++|+++|+.||.|. .|.|+.+.+|+++|||||+|.+.++|++|+ .+|+..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVID-ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 5578999999999999999999999999998 699999989999999999999999999999 579999888 99999
Q ss_pred EEcCCcc
Q psy10467 216 VMSGAQW 222 (304)
Q Consensus 216 ~~~~~~~ 222 (304)
.++....
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9988754
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.95 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|++|+. +|+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVV-NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 6678999999999999999999999999998 6888888 489999999999999999999995 799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 87754
No 61
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=125.26 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCccce--------EEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCcc
Q psy10467 139 AVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG--------ITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKI 208 (304)
Q Consensus 139 ~~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~--------v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~ 208 (304)
.....+|||+|||+++|+++|+++|++||.|. . |.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBC-EETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEe-eccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 36778999999999999999999999999998 6 888888 68999999999999999999999 5799999
Q ss_pred CCeEEEEEEcC
Q psy10467 209 GHRLVTLVMSG 219 (304)
Q Consensus 209 ~gr~i~V~~~~ 219 (304)
+|+.|+|..|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999998863
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=6.2e-18 Score=123.31 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||.++|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|+|.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEE-EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 5678999999999999999999999999998 6888888 78999999999999999999999 6799999999999988
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 63
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=6.1e-18 Score=139.30 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEE-EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 5678999999999999999999999999998 6999888 79999999999999999999999 5799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8764
No 64
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=124.13 Aligned_cols=82 Identities=13% Similarity=0.311 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+..+ ++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEE-EEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 6678999999999999999999999999998 6899887655 8999999999999999999 57999999999999998
Q ss_pred CCccc
Q psy10467 219 GAQWF 223 (304)
Q Consensus 219 ~~~~~ 223 (304)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 87643
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1e-17 Score=125.25 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
.++|||+|||..+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI-NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999998 6888888 67999999999999999999999 679999999999999988
Q ss_pred Cccc
Q psy10467 220 AQWF 223 (304)
Q Consensus 220 ~~~~ 223 (304)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7643
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=126.47 Aligned_cols=81 Identities=22% Similarity=0.471 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC-C-CCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY-A-GRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~-~-g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++|| |. .|.|+.+. + |+++|||||+|.+.++|++||.+|+..|+|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EE-EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ce-EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 5568999999999999999999999999 76 59998884 4 8999999999999999999997799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87753
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=127.14 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccc-------eEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN-------GITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH 210 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~-------~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g 210 (304)
...++|||+|||+++|+++|+++|++||.|.. .|.|+.+ .+|+++|||||+|.+.++|++|| .+|+..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 66789999999999999999999999999972 3888888 78999999999999999999999 579999999
Q ss_pred eEEEEEEcCCcc
Q psy10467 211 RLVTLVMSGAQW 222 (304)
Q Consensus 211 r~i~V~~~~~~~ 222 (304)
+.|.|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999987653
No 68
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=127.55 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+++|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|++|+. +|+..|+|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVG-DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 5678999999999999999999999999998 6888887 579999999999999999999995 799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8764
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=125.41 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+.+|+++|||||+|.+.++|++|+. +|+..|+|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLT-KVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 5568999999999999999999999999998 6999999889999999999999999999995 7999999999999887
Q ss_pred C
Q psy10467 219 G 219 (304)
Q Consensus 219 ~ 219 (304)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 70
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=126.05 Aligned_cols=82 Identities=15% Similarity=0.410 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC--CCCcccEEEEEecCHHHHHHHH-Hh-CCCccCCeEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY--AGRCTGVAYIQFVDKENAEKAL-LR-HKEKIGHRLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~--~g~~~G~afV~f~~~~~a~~A~-~~-~~~~~~gr~i~V 215 (304)
....+|||+|||+.+|+++|+++|+.||.|. .|.|+.+. +|+++|||||+|.+.++|.+|+ .+ |+..|+|+.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELK-TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeE-EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 5678899999999999999999999999998 58888774 8999999999999999999999 67 899999999999
Q ss_pred EEcCCcc
Q psy10467 216 VMSGAQW 222 (304)
Q Consensus 216 ~~~~~~~ 222 (304)
.++.+..
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9987753
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=3.4e-18 Score=121.83 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=69.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 144 ~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
+|||+|||+++|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|++|+++|+..|+|+.|.|..|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD-DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS-EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999998 6888888 4899999999999999999999999999999999999764
No 72
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.9e-18 Score=125.73 Aligned_cols=82 Identities=13% Similarity=0.224 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC----CCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY----AGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~----~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~ 214 (304)
...++|||+|||+++|+++|+++|++||.|. .|.++.+. +++++|||||+|.+.++|++|+. +|+..|+|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIK-SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4567899999999999999999999999998 68888873 45899999999999999999995 799999999999
Q ss_pred EEEcCCcc
Q psy10467 215 LVMSGAQW 222 (304)
Q Consensus 215 V~~~~~~~ 222 (304)
|.++.+..
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99987653
No 73
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=124.05 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEE-EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 5678899999999999999999999999998 6899888 57899999999999999999999 5799999999999988
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 763
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.5e-17 Score=126.76 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.|+.+.+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 6678999999999999999999999999998 699999999999999999999999999999 57999999999999886
Q ss_pred C
Q psy10467 219 G 219 (304)
Q Consensus 219 ~ 219 (304)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=126.95 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCc-cCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEG-LEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEK-IGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~-~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~-~~gr~i~V~ 216 (304)
....+|||+|||+++|+++|+++|++ ||.|. .|.|+.+.+|+++|||||+|.+.++|.+|+ .+|+.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR-GGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE-EEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE-EEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 56688999999999999999999999 99998 699999889999999999999999999999 579999 999999998
Q ss_pred EcCCcc
Q psy10467 217 MSGAQW 222 (304)
Q Consensus 217 ~~~~~~ 222 (304)
.+.+..
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 886653
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=123.64 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|+|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV-KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEE-EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 5668899999999999999999999999998 6899888 56899999999999999999999 6799999999999988
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 77
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=8.9e-18 Score=123.58 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=73.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
.++|||+|||+++|+++|+++|++||.|. .+.++.+ .+|+++|||||+|.+.++|++|+.+|+..|+|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVN-RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEE-EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46899999999999999999999999998 6999988 589999999999999999999997799999999999999865
Q ss_pred c
Q psy10467 221 Q 221 (304)
Q Consensus 221 ~ 221 (304)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=126.36 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhC------CCccCCe
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRH------KEKIGHR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~------~~~~~gr 211 (304)
....+|||+|||+.+|+++|+++|+.||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|| .+| +..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLK-YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 5678899999999999999999999999998 6899888 67999999999999999999999 578 9999999
Q ss_pred EEEEEEcCCc
Q psy10467 212 LVTLVMSGAQ 221 (304)
Q Consensus 212 ~i~V~~~~~~ 221 (304)
.|.|.++.++
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998765
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=2.7e-18 Score=136.84 Aligned_cols=81 Identities=22% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+++|+++|+++|+.||.|. .|.|+.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCS-EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4457799999999999999999999999998 6888887 58999999999999999999999 5799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.+.
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 80
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=1.7e-18 Score=130.68 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCC-
Q psy10467 140 VDQCCMRLQGLPY------ECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH- 210 (304)
Q Consensus 140 ~~~~~v~v~nLp~------~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g- 210 (304)
...++|||+|||+ ++++++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV-NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3467899999999 999999999999999998 6999988 56999999999999999999999 689999999
Q ss_pred eEEEEEEcCCc
Q psy10467 211 RLVTLVMSGAQ 221 (304)
Q Consensus 211 r~i~V~~~~~~ 221 (304)
+.|.|..+.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998764
No 81
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=127.68 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+||..|+..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVV-DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 6678999999999999999999999999998 6999888 6899999999999999999999966999999999999888
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.++.
T Consensus 93 ~~~~ 96 (105)
T 2dh8_A 93 TPRG 96 (105)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 7654
No 82
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=123.08 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|.+ +.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|+|..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTT-TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccc-eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 55688999999999999999999999999974 555554 78999999999999999999999 6799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7653
No 83
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=2.5e-17 Score=125.33 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCcc---CCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKI---GHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~---~gr~i~ 214 (304)
....+|||+|||+++|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|+ .+|+..+ .|+.|.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY-ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCC-EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 5678999999999999999999999999998 6999888 57999999999999999999999 5799887 899999
Q ss_pred EEEcCCcc
Q psy10467 215 LVMSGAQW 222 (304)
Q Consensus 215 V~~~~~~~ 222 (304)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987653
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.1e-17 Score=122.38 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.++. .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVL-YADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEE-EEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999998 588887 48999999999999999999999 57999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=127.73 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
..++|||+|||+.+|+++|+++|+.||.|. .|.|+.+ .+|+++|||||+|.+.++|.+||..|+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLT-DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCS-EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 347899999999999999999999999998 6999888 67999999999999999999999669999999999999987
Q ss_pred Ccc
Q psy10467 220 AQW 222 (304)
Q Consensus 220 ~~~ 222 (304)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 753
No 86
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=123.43 Aligned_cols=81 Identities=16% Similarity=0.375 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+||. +++.|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE-EEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 5668899999999999999999999999998 6999888 679999999999999999999998 578999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7753
No 87
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.4e-17 Score=130.77 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|.|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 5678999999999999999999999999998 6888888 59999999999999999999999 6799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8764
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=123.47 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVE----KFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~----~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
....+|||+|||+.+|+++|+ ++|++||.|. .|.|+.+..+ +|||||+|.+.++|++|+ .+|+..|+|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~-~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK-SVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE-EEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 566899999999999999999 9999999998 6999988655 899999999999999999 5899999999999
Q ss_pred EEEcCCc
Q psy10467 215 LVMSGAQ 221 (304)
Q Consensus 215 V~~~~~~ 221 (304)
|..+.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998765
No 89
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=125.77 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 5678999999999999999999999999998 6999888 67999999999999999999999 5799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 90
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=2e-17 Score=126.82 Aligned_cols=82 Identities=16% Similarity=0.386 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+..++..|+|+.|.|..+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeE-EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 5678899999999999999999999999998 6999888 5799999999999999999999987779999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 91
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-17 Score=124.93 Aligned_cols=80 Identities=20% Similarity=0.362 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+ .+++++|||||+|.+.++|++||. +|+ .|+|+.|.|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEE-EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCee-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 6678999999999999999999999999998 6999888 679999999999999999999995 476 89999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8754
No 92
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=121.98 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC-CCC-cccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY-AGR-CTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~-~g~-~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
...+|||+|||+++|+++|+++|++||.|. .+.++.+. ++. ++|||||+|.+.++|.+|+. +|+..|+|+.|.|..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457899999999999999999999999998 58888774 344 89999999999999999995 799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.++
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8664
No 93
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=6e-17 Score=126.87 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+.+++++|+++|+.||.|. .|.|+.+.+|+++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCS-EEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 6678999999999999999999999999998 6999998899999999999999999999995 7999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7753
No 94
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2.5e-17 Score=126.22 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 6678999999999999999999999999998 6888888 68999999999999999999999 5799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8764
No 95
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=135.65 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--CccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLE--IVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g--~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
...+|||+|||+++|+++|+++|+.|| .|. .|.|+.| .+|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~-~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV-ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 467999999999999999999999999 787 6999888 79999999999999999999999 559999999999999
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
.+.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98764
No 96
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.1e-17 Score=137.79 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+||..++..|+|+.|.|..+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 5678999999999999999999999999998 6899888 6799999999999999999999988999999999999887
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 643
No 97
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=2.4e-17 Score=122.82 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|.+ +.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|+|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTT-CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccc-eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 44588999999999999999999999999974 666655 78999999999999999999999 5799999999999988
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
++
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 98
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=126.30 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIE-SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEE-EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 6678999999999999999999999999998 6888888 68999999999999999999999 5799999999999998
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-17 Score=122.20 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+..+ ++|||||+|.+.++|.+|+ .+|+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEe-EEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 5678999999999999999999999999998 6888887444 7899999999999999999 58999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
....
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 7753
No 100
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=126.13 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--CCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RH--KEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~--~~~~~gr~i~V~ 216 (304)
....+|||+|||+++|++||+++|++||.|. .|.|+.+ +|||||+|++.++|++|+. ++ +..|.|+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~-~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 6678999999999999999999999999998 5888764 7999999999999999995 54 478999999999
Q ss_pred EcCCcccc
Q psy10467 217 MSGAQWFL 224 (304)
Q Consensus 217 ~~~~~~~~ 224 (304)
++..+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 98776443
No 101
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-17 Score=121.52 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
..+..|+|+||++.+|+++|+++|.+||+|. .+.+.. ++|||||+|.+.++|.+|+ .+|+..|.||.|+|..+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~-~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLV-SFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEE-EEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4456799999999999999999999999998 588764 7999999999999999999 78999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
+..+
T Consensus 79 ~e~~ 82 (89)
T 2wbr_A 79 SENE 82 (89)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6543
No 102
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=6.5e-18 Score=127.44 Aligned_cols=80 Identities=24% Similarity=0.499 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC--CCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY--AGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~--~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++|| |. .|.|+.+. +|+++|||||+|.+.++|.+|+.+|+..|+|+.|.|..
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EE-EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce-EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 6678999999999999999999999999 87 69998884 89999999999999999999998899999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 103
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=122.65 Aligned_cols=78 Identities=26% Similarity=0.496 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|++||.| .++.+.+|+++|||||+|.+.++|++|+. +|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v----~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE----ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE----EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 567899999999999999999999999854 56667889999999999999999999995 7999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.++
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 104
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=5.3e-17 Score=132.33 Aligned_cols=81 Identities=12% Similarity=0.302 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+.+ .+++++|||||+|.+.++|++||. +|+..|+|+.|.|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5678999999999999999999999999998 6999888 579999999999999999999995 799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 8764
No 105
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.1e-18 Score=129.59 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
..++|||+|||+.+|+++|+++|+.||.|. .|.|+.+ .+|+++|||||+|.+.++|++||.+|+..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEe-EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 457899999999999999999999999998 6999888 56999999999999999999999889999999999999987
Q ss_pred Ccc
Q psy10467 220 AQW 222 (304)
Q Consensus 220 ~~~ 222 (304)
+..
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 106
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=124.49 Aligned_cols=80 Identities=13% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||.++|+++|+++|++||.|. .|.++.+.. .++|||||+|.+.++|++|+ .+|+..|+|+.|.|..+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCS-CEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEE-EEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 6678999999999999999999999999998 599988754 48999999999999999999 57999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 107
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=6.2e-18 Score=120.40 Aligned_cols=74 Identities=19% Similarity=0.415 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 144 ~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
+|||+|||+++|+++|+++|++||.|. .+.++.+ .+|+++|||||+|.+.++|.+|+.+++..|+|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS-EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 489999999999999999999999998 6888887 6799999999999999999999988999999999999764
No 108
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-17 Score=128.77 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|+.||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5678999999999999999999999999998 6888888 67999999999999999999999 5799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+....
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
No 109
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=130.73 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccce--EEEeeCC-CCCcccEEEEEecCHHHHHHHH-HhCCC----ccCCe
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG--ITIPHDY-AGRCTGVAYIQFVDKENAEKAL-LRHKE----KIGHR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~--v~~~~~~-~g~~~G~afV~f~~~~~a~~A~-~~~~~----~~~gr 211 (304)
....+|||+|||+++|+++|+++|++||.|. . |+|+.|. +|+++|||||+|.+. +|.+|+ .+|+. .|+|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~-~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLS-SSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCC-TTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc-eeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 5567999999999999999999999999995 3 8999985 999999999999999 999999 67999 99999
Q ss_pred EEEEEEcCCc
Q psy10467 212 LVTLVMSGAQ 221 (304)
Q Consensus 212 ~i~V~~~~~~ 221 (304)
.|.|.++.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998765
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=122.45 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeE----E
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRL----V 213 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~----i 213 (304)
...++|||+|||+++|+++|+++|++||.|...|.++.+ .+|+++|||||+|.+.++|++|+. +|+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 567899999999999999999999999988624888888 589999999999999999999995 7999999999 9
Q ss_pred EEEEcCCc
Q psy10467 214 TLVMSGAQ 221 (304)
Q Consensus 214 ~V~~~~~~ 221 (304)
+|.++.+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99988764
No 111
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.6e-17 Score=131.82 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=71.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
++|||+|||.++|+++|+++|++||.|. .|.++.+.+|+++|||||+|.+.++|.+|+ .+|+..+.|+.|.|..+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA-NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE-EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE-EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 4799999999999999999999999998 699999988999999999999999999999 7899999999999988653
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=3.5e-17 Score=129.33 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|++|| .+|+..|+|+.|.|.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEE-EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 6678999999999999999999999999998 6999888 67899999999999999999999 5799999999999988
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8764
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=124.01 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hC--CCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RH--KEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~--~~~~~gr~i~V~ 216 (304)
....+|||+|||+++|+++|+++|++||.|. .|.|+.+ +|||||+|++.++|.+|+. ++ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~-~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCC-EEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 5678999999999999999999999999998 5888864 7999999999999999994 55 578999999999
Q ss_pred EcCCccccC
Q psy10467 217 MSGAQWFLS 225 (304)
Q Consensus 217 ~~~~~~~~~ 225 (304)
.+..+....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998765543
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=123.79 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
..++|||+|||+.+|+++|+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCS-EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCee-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346799999999999999999999999998 6898888 68999999999999999999999 57999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7653
No 115
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=121.11 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCc--cCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEK--IGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~--~~gr~i~V~ 216 (304)
.++.+|||+|||+++|+++|+++|++||.|. .|.++. .+|||||+|++.++|.+|+ .+++.. |.|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~-~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPIS-YVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 5678999999999999999999999999998 587763 5789999999999999999 567654 889999999
Q ss_pred EcCCcc
Q psy10467 217 MSGAQW 222 (304)
Q Consensus 217 ~~~~~~ 222 (304)
.++.++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 987654
No 116
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=5.3e-17 Score=127.07 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=73.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
.++|||+|||+++|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSIN-RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEE-EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999998 6899888 689999999999999999999998899999999999999775
Q ss_pred c
Q psy10467 221 Q 221 (304)
Q Consensus 221 ~ 221 (304)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=119.75 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h--CCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-R--HKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~--~~~~~~gr~i~V~ 216 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.++.+ +|||||+|++.++|.+|+. + ++..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT-NILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 5678999999999999999999999999998 5877753 7999999999999999994 4 5788999999999
Q ss_pred EcCCcccc
Q psy10467 217 MSGAQWFL 224 (304)
Q Consensus 217 ~~~~~~~~ 224 (304)
++..+...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 98876543
No 118
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=121.45 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|.. +++++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 5678999999999999999999999999997 577754 5668999999999999999999 77999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
...
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 119
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.1e-17 Score=126.61 Aligned_cols=78 Identities=14% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|+|.+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVI-SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEE-EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5678999999999999999999999999998 6899888 68999999999999999999999 5799999999999987
Q ss_pred c
Q psy10467 218 S 218 (304)
Q Consensus 218 ~ 218 (304)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4.1e-17 Score=125.35 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC-CccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLE-IVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g-~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+++|+++|+++|++|| .|. .+.+.. ++++|||||+|.+.++|++|+ .+|+..|+||.|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~-~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETT-FSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCS-EEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeE-EEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 5568999999999999999999999999 787 466643 358899999999999999999 6799999999999998
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
+..
T Consensus 102 a~~ 104 (111)
T 2jvr_A 102 DDN 104 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 121
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1e-16 Score=131.16 Aligned_cols=79 Identities=11% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
+.++|||+|||.++|+++|+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPIN-TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 357899999999999999999999999998 6888887 58999999999999999999999 57999999999999887
Q ss_pred CC
Q psy10467 219 GA 220 (304)
Q Consensus 219 ~~ 220 (304)
.+
T Consensus 81 ~~ 82 (168)
T 1b7f_A 81 RP 82 (168)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=119.99 Aligned_cols=71 Identities=13% Similarity=0.260 Sum_probs=65.2
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCe-EEE
Q psy10467 143 CCMRLQGLPYEC------KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHR-LVT 214 (304)
Q Consensus 143 ~~v~v~nLp~~~------t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr-~i~ 214 (304)
++|||+|||+.+ |+++|+++|++||.|. .|.++ ..+|+++|||||+|.+.++|.+|+ .+|+..|+|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~-~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE-EEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE-EEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 7899999999999998 57776 578999999999999999999999 5799999999 887
Q ss_pred E
Q psy10467 215 L 215 (304)
Q Consensus 215 V 215 (304)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 123
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=122.54 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-ccceEEEe-eC-CCCCcccEEEEEecCHHHHHHHH-HhC--CCccCCeEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEI-VPNGITIP-HD-YAGRCTGVAYIQFVDKENAEKAL-LRH--KEKIGHRLV 213 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~-v~~~v~~~-~~-~~g~~~G~afV~f~~~~~a~~A~-~~~--~~~~~gr~i 213 (304)
...++|||+|||+.+|+++|+++|+.||. |. .|.++ .+ .+|+++|||||+|.+.++|.+|+ .+| +..|+|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~-~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVL-DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEE-EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCce-EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 55789999999999999999999999998 87 58777 45 57899999999999999999999 565 589999999
Q ss_pred EEEEcCCcc
Q psy10467 214 TLVMSGAQW 222 (304)
Q Consensus 214 ~V~~~~~~~ 222 (304)
.|.++.+..
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999987653
No 124
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=123.55 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCe-
Q psy10467 140 VDQCCMRLQGLPYEC------KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHR- 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~------t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr- 211 (304)
...++|||+|||+.+ |+++|+++|++||.|. .|.|+ ..+|+++|||||+|.+.++|.+|+ .+|+..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~-~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE-EEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE-EEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 456899999999999 8899999999999998 58777 578999999999999999999999 5799999998
Q ss_pred EEEEEEcCCc
Q psy10467 212 LVTLVMSGAQ 221 (304)
Q Consensus 212 ~i~V~~~~~~ 221 (304)
.|.|..+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988654
No 125
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-17 Score=125.44 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+++|+++|+++|++||.|.. .++.+ .+|+++|||||+|.+.++|++||++|+..|.|+.|.|..+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 56789999999999999999999999999874 34444 7899999999999999999999999999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 126
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=1.4e-16 Score=150.46 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|.++|++||.|. .|.|+.+ .+|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIK-RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCee-EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567999999999999999999999999998 6999888 68999999999999999999999 6799999999999999
Q ss_pred cCCccc
Q psy10467 218 SGAQWF 223 (304)
Q Consensus 218 ~~~~~~ 223 (304)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986543
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=117.02 Aligned_cols=75 Identities=17% Similarity=0.450 Sum_probs=68.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~ 218 (304)
++|||+|||+++|+++|+++|++||.|. .+.++.+ .+|+++|||||+|.+.++|++|+...+..++|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCC-CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 3699999999999999999999999998 5999888 5799999999999999999999965339999999999875
No 128
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=119.29 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+++|+++|+++|++++ .|.++.+ .+|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5678899999999999999999999873 3777777 68999999999999999999999 5799999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 87653
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-17 Score=121.50 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|. .+.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|+|..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIV-STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEE-EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 5568999999999999999999999999998 6888888 68999999999999999999999 5799999999887644
No 130
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=124.69 Aligned_cols=82 Identities=13% Similarity=0.263 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HHhhcCCCccceEEEeeCC----CCCcccEEEEEecCHHHHHHHH-HhCCCccCCe
Q psy10467 140 VDQCCMRLQGLPYECKKEDVE---KFLEGLEIVPNGITIPHDY----AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~---~~F~~~g~v~~~v~~~~~~----~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr 211 (304)
....+|||+|||+++|+++|+ ++|++||.|. .|.|+.+. +++++|||||+|.+.++|++|| .+|+..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~-~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH-KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE-EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE-EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 456789999999999999999 9999999998 58888773 3467799999999999999999 5799999999
Q ss_pred EEEEEEcCCcc
Q psy10467 212 LVTLVMSGAQW 222 (304)
Q Consensus 212 ~i~V~~~~~~~ 222 (304)
.|.|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999987653
No 131
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=5.6e-17 Score=138.89 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+++|+++|+++|++||.|. .|.|+.| .+|+++|||||+|.+.++|.+|| .+|+..+.|+.|.|..
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPIL-SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4457899999999999999999999999998 6999988 68999999999999999999999 6799999999999977
Q ss_pred cCC
Q psy10467 218 SGA 220 (304)
Q Consensus 218 ~~~ 220 (304)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 132
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=4.1e-17 Score=126.28 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeE-----E
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRL-----V 213 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~-----i 213 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+ |||||+|++.++|++|| .+|+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEE-EEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 4467899999999999999999999999998 5888765 89999999999999999 58999999998 6
Q ss_pred EEEEcCC
Q psy10467 214 TLVMSGA 220 (304)
Q Consensus 214 ~V~~~~~ 220 (304)
+|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6655443
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.9e-16 Score=129.25 Aligned_cols=78 Identities=14% Similarity=0.350 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCC-CCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDY-AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~-~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
.++|||+|||.++|+++|+++|+.||.|. .+.++.+. +|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 47899999999999999999999999998 69998885 9999999999999999999999 579999999999998865
Q ss_pred C
Q psy10467 220 A 220 (304)
Q Consensus 220 ~ 220 (304)
+
T Consensus 81 ~ 81 (167)
T 1fxl_A 81 P 81 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=120.96 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCC--CccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHK--EKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~--~~~~gr~i~V~ 216 (304)
....+|||+|||+++|+++|+++|++||.|. .|.++. .+|||||+|++.++|.+|+ .+++ ..|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 5678999999999999999999999999998 577764 3799999999999999999 4544 56999999999
Q ss_pred EcCCccccC
Q psy10467 217 MSGAQWFLS 225 (304)
Q Consensus 217 ~~~~~~~~~ 225 (304)
++..+....
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 998765443
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=120.08 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCC-----eEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH-----RLV 213 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g-----r~i 213 (304)
...++|||+|||+++|+++|+++|++||.|. .|.|+.+ |||||+|.+.++|++|| .+|+..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 5578999999999999999999999999998 5888765 89999999999999999 579999999 999
Q ss_pred EEEEcCC
Q psy10467 214 TLVMSGA 220 (304)
Q Consensus 214 ~V~~~~~ 220 (304)
+|..+.+
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9999876
No 136
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=3.9e-16 Score=118.19 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|++||.|. .|.++ +|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLE-RVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEE-EEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 5568899999999999999999999999998 57775 469999999999999999 57999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7653
No 137
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=3.6e-17 Score=123.58 Aligned_cols=80 Identities=13% Similarity=0.228 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
...++|||+|||+++|+++|+++|+.||.|. .|.++.+.+|+++|||||+|.+.++|++|+. ++..|+|+.|.|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVK-EVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 4567899999999999999999999999998 6999998899999999999999999999999 9999999999998877
Q ss_pred Cc
Q psy10467 220 AQ 221 (304)
Q Consensus 220 ~~ 221 (304)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 138
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=120.95 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCcc--------CC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKI--------GH 210 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~--------~g 210 (304)
....+|||+|||+.+|+++|+++|+.||.|. .|.|+.+.+|+++|||||+|.+.++|.+|+ .+|+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVI-STRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 5668999999999999999999999999998 699999889999999999999999999999 5799999 57
Q ss_pred eEEEEEEcCC
Q psy10467 211 RLVTLVMSGA 220 (304)
Q Consensus 211 r~i~V~~~~~ 220 (304)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8889888764
No 139
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=115.68 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||.++|+++|+++|++||.|. .|.++ +|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVL-ECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEE-EEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 5678999999999999999999999999998 57776 689999999999999999 67999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6e-17 Score=125.01 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+++|+++|+++|++||.|.. +.+..+ .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKG-PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSS-SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccc-eEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 56689999999999999999999999998852 322222 38999999999999999999999 5799999999999999
Q ss_pred cCCccc
Q psy10467 218 SGAQWF 223 (304)
Q Consensus 218 ~~~~~~ 223 (304)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 887543
No 141
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=126.31 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|++|+ .+|+..|+|+.|+|.+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE-EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 5678999999999999999999999999998 6888888 78999999999999999999999 6799999999999976
Q ss_pred c
Q psy10467 218 S 218 (304)
Q Consensus 218 ~ 218 (304)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 142
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=117.01 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+.+|+++|+++|++||.|. +.++. ++++|||||+|.+.++|++|+ .+|+..|+|+.|.|..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP--LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5568999999999999999999999999986 55654 478899999999999999999 67999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 143
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.3e-17 Score=121.69 Aligned_cols=77 Identities=12% Similarity=0.238 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCC
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~ 220 (304)
++|||+|||.++|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.+ |.+|+ .+|+..++|+.|.|..+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF-NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS-EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE-EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5799999999999999999999999998 6999888 57999999999999999 99999 5699999999999999876
Q ss_pred c
Q psy10467 221 Q 221 (304)
Q Consensus 221 ~ 221 (304)
.
T Consensus 80 ~ 80 (90)
T 2ki2_A 80 K 80 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 144
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=120.11 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCC--CccCCeEEEE
Q psy10467 140 VDQCCMRLQGLPY-ECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHK--EKIGHRLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~-~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~--~~~~gr~i~V 215 (304)
....+|||+|||+ ++|++||+++|++||.|. .|.|+.+ +|||||+|++.++|.+|+ .+|+ ..|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~-~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEE-EEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE-EEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 5678999999999 999999999999999998 5888753 589999999999999999 5664 5699999999
Q ss_pred EEcCCc
Q psy10467 216 VMSGAQ 221 (304)
Q Consensus 216 ~~~~~~ 221 (304)
..+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998754
No 145
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=117.99 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=68.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcCCc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSGAQ 221 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~~~ 221 (304)
.+|||+|||+++|+++|+++|++||.|. .|.++.+ ++|||||+|.+.++|++|+ .+|+..|+|+.|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR-TVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS-EEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 3799999999999999999999999998 6888876 7899999999999999999 57999999999999998765
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=115.92 Aligned_cols=75 Identities=12% Similarity=0.238 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-ccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCC-CccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEI-VPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHK-EKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~-v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~-~~~~gr~i~V~ 216 (304)
...++|||+|||+++|+++|+++|++||. |. .+.+ .++|||||+|.+.++|++|+ .+|+ ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~-~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA-GQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS-SCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE-EEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 55678999999999999999999999998 54 4554 25799999999999999999 5799 99999999999
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
++.++
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 98765
No 147
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.5e-16 Score=115.38 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||..+|+++|+++|++||.|. .|.+.. .+|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAG-EVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCS-EEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE-EEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 5678999999999999999999999999998 588774 3789999999999999999 67999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7754
No 148
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=118.08 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+.+|+++|+++|++||.|. .+ ..+|+++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~-~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR-LV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC-CE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE-Ee----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 5568999999999999999999999999776 23 5688999999999999999999995 7999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.2e-16 Score=138.51 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--CccceEEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLE--IVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g--~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
...+|||+|||+.+|+++|+++|++|| .|. .|.|+.| .+|+++|||||+|.+.++|++|| .+|+..|+|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~-~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE-EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999999999 887 6999998 69999999999999999999999 579999999999999
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
++...
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98754
No 150
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=112.41 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|++||.|. .|.++. +||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVI-ECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCC-EEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 6678999999999999999999999999998 587763 49999999999999999 67999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7653
No 151
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=118.48 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||..+|+++|+++|+.||.|. .|.++.+ +|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 5568999999999999999999999999998 5888764 789999999999999999 77999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=120.07 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-Hh--CCCccCCeEEEE
Q psy10467 140 VDQCCMRLQGLPYE-CKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LR--HKEKIGHRLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~-~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~--~~~~~~gr~i~V 215 (304)
....+|||+|||++ +|+++|+++|++||.|. .|.|+ +++|||||+|++.++|.+|+ .+ ++..|.||.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~-~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE-EEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 56789999999998 99999999999999998 58876 35799999999999999999 45 456799999999
Q ss_pred EEcCCcc
Q psy10467 216 VMSGAQW 222 (304)
Q Consensus 216 ~~~~~~~ 222 (304)
..+....
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9987653
No 153
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=122.60 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVE----KFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~----~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
....+|||+|||+.+++++|+ ++|++||.|. .|.+. .+|+++|||||+|.+.++|..|+ .+||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~-~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDIL-DIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE-EEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 557899999999999999876 6999999997 46554 57899999999999999999999 6799999999999
Q ss_pred EEEcCCc
Q psy10467 215 LVMSGAQ 221 (304)
Q Consensus 215 V~~~~~~ 221 (304)
|.++..+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9998765
No 154
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=4.9e-16 Score=129.35 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.|+.+.+|+++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCS-EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5678999999999999999999999999998 6999998899999999999999999999995 7999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7653
No 155
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.6e-16 Score=113.04 Aligned_cols=74 Identities=9% Similarity=0.201 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|++||.|. .|.++ +|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVI-ECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 5678899999999999999999999999998 57776 349999999999999999 57999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 156
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.3e-16 Score=116.90 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||.++|+++|+++|+.||.|. .|.+. +++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFIL-DFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEE-EEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4568999999999999999999999999998 58776 56899999999999999999 67999999999999887
Q ss_pred CC
Q psy10467 219 GA 220 (304)
Q Consensus 219 ~~ 220 (304)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 157
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=1.1e-16 Score=132.11 Aligned_cols=80 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
...++|||+|||+++|+++|+++|..+|.+.. +.+....+|+++|||||+|.+.++|.+|+++|+..|.|+.|.|..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 66789999999999999999999999998763 44444478999999999999999999999999999999999998865
Q ss_pred C
Q psy10467 220 A 220 (304)
Q Consensus 220 ~ 220 (304)
.
T Consensus 90 ~ 90 (175)
T 1fje_B 90 G 90 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=1.2e-15 Score=129.89 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLP-YECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp-~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
..+.+|||+||| +.+|+++|+++|++||.|. .|.++.+ .+|||||+|.+.++|++|| .+|+..|.|+.|.|..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~-~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE-KVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEE-EEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeE-EEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356789999999 8999999999999999998 6888764 4789999999999999999 6899999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-15 Score=112.94 Aligned_cols=74 Identities=14% Similarity=0.228 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC--CCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGL--EIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~--g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~ 216 (304)
...++|||+|||+.+|+++|+++|++| |.|. .|.+ ++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~-~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE-RVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE-EEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE-EEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 567899999999999999999999999 7776 4554 3679999999999999999 589999999999999
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
++.+.
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 98764
No 160
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.5e-16 Score=115.24 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccC--CeEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG--HRLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~--gr~i~V~ 216 (304)
....+|||+|||+.+|+++|+++|++||.|. .|.+..+ +|||||+|.+.++|++|+ .+|+..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 5567899999999999999999999999998 5777643 789999999999999999 57999999 9999999
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
++.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98764
No 161
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=2.3e-15 Score=126.89 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=68.9
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEcC
Q psy10467 142 QCCMRLQGLPY-ECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 142 ~~~v~v~nLp~-~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~~ 219 (304)
.++|||+|||+ ++|+++|+++|+.||.|. .|.++.+. +|||||+|.+.++|.+|+ .+|+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~-~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCS-EEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 999999999999999998 58887754 789999999999999999 589999999999999987
Q ss_pred Ccc
Q psy10467 220 AQW 222 (304)
Q Consensus 220 ~~~ 222 (304)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 162
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.5e-16 Score=117.70 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVE----KFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~----~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
....+|||+|||.++|+++|+ ++|++||.|. .|.+. .+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~-~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL-DILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE-EEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE-EEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 567899999999999999999 9999999997 47665 36788999999999999999999 5799999999999
Q ss_pred EEEcCCc
Q psy10467 215 LVMSGAQ 221 (304)
Q Consensus 215 V~~~~~~ 221 (304)
|..+.+.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9998765
No 163
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=1.1e-15 Score=116.80 Aligned_cols=74 Identities=16% Similarity=0.360 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+++|+++|+++|++||.|. .|.++ +|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMK-EVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCC-EEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 6678999999999999999999999999998 58776 789999999999999999 57999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
...
T Consensus 101 ~~~ 103 (108)
T 2jvo_A 101 KLP 103 (108)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=113.59 Aligned_cols=77 Identities=12% Similarity=0.210 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
....+|||+|||+++|+++|+++|+.||.|. .| +....+|+ ||||+|.+.++|.+|+.+|+..|+|+.|.|..+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SV-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEE-EE-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EE-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 4567899999999999999999999999998 45 33335665 9999999999999999999999999999998765
Q ss_pred Cc
Q psy10467 220 AQ 221 (304)
Q Consensus 220 ~~ 221 (304)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 44
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=1.6e-15 Score=111.47 Aligned_cols=76 Identities=13% Similarity=0.245 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|||+++|+++|+++|++| .|. .+.+. +++|||||+|.+.++|++|+ .+|+..++|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~-~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLK-YCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCC-CEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeE-EEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456789999999999999999999999 777 47773 68999999999999999999 58999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6654
No 166
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=1.8e-15 Score=115.87 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYE-CKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~-~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+. +|+++|+++|++||.|. .|.+ ++|||||+|.+.++|++|+ .+|+..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~-~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVA-GCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCS-EEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45589999999999 99999999999999998 5777 6799999999999999999 7799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 167
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=1e-15 Score=118.12 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|+.||.|. .|.++.+ +.++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIR-QIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 5568999999999999999999999999998 5888754 566999999999999999999 58999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8654
No 168
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=1.5e-16 Score=123.13 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=55.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. +|.|+.|++ .++|||||+|.++++|++||+. ++..|+|+.|.|..+..
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~---------~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNIL---------SCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCCCCHHHHHHHHhccCCEE---------EEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 466777777776666666555 599998865 4899999999999999999976 55999999999988543
No 169
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=110.89 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH-h-CCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL-R-HKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~-~-~~~~~~gr~i~V~~ 217 (304)
....+|||+|||..+|+++|+++|++||.|. .|.++. ++|||||+|.+.++|.+|+. + |+..++|+.|.|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~-~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR-TITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE-EEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe-EEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 5668899999999999999999999999998 588875 47999999999999999995 7 99999999999988
Q ss_pred cC
Q psy10467 218 SG 219 (304)
Q Consensus 218 ~~ 219 (304)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3.1e-16 Score=128.29 Aligned_cols=77 Identities=14% Similarity=0.387 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
.++|||+|||+++|+++|+++|++||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+. ++..|+|+.|.|..+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVT-DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEE-EEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 57899999999999999999999999998 6898888 689999999999999999999997 36789999998877543
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=9.7e-15 Score=129.82 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVE----KFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~----~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
...++|||+|||+++|+++|+ ++|+.||.|. .|.++. +|+++|||||+|.+.++|.+|+ .+|+..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~-~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL-DILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE-EEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 567899999999999999977 8999999998 577664 8899999999999999999999 7799999999999
Q ss_pred EEEcCCc
Q psy10467 215 LVMSGAQ 221 (304)
Q Consensus 215 V~~~~~~ 221 (304)
|.++...
T Consensus 84 v~~a~~~ 90 (282)
T 3pgw_A 84 IQYAKTD 90 (282)
T ss_pred EEEeccC
Confidence 9988654
No 172
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.7e-15 Score=113.43 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPY-ECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~-~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+ ++|+++|+++|+.||.|. .|.+ ++|||||+|.+.++|.+|+ .+|+..++|+.|.|..
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~-~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE-EEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 6678999999998 999999999999999998 5776 3789999999999999999 5899999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=4.4e-16 Score=130.95 Aligned_cols=80 Identities=9% Similarity=0.142 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceE------EEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEE
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGI------TIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVT 214 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v------~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~ 214 (304)
..++|||+|||+++|+++|+++|++||.|. ++ .+.....++++|||||+|.+.++|.+||.+|+..|+|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~-g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLG-GLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHH-TCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhc-ccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 457899999999999999999999995433 11 12222346789999999999999999998899999999999
Q ss_pred EEEcCCc
Q psy10467 215 LVMSGAQ 221 (304)
Q Consensus 215 V~~~~~~ 221 (304)
|..+...
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9876653
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=3e-15 Score=129.50 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPY-ECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~-~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+ ++|+++|+++|+.||.|. .|.++.+. +|||||+|.+.++|.+|+ .+|+..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~-~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE-EEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5678999999999 999999999999999998 58888764 789999999999999999 5899999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8765
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-17 Score=127.16 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccce--------EEEeeC-CCCCcccEEEEEecCHHHHHHHH-HhCCCccC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG--------ITIPHD-YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIG 209 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~--------v~~~~~-~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~ 209 (304)
....+|||+|||+++|+++|+++|++||.|. . |.++.+ .+|+++|||||+|.+.++|.+|+ .+|+..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 4567899999999999999999999999997 5 778887 67999999999999999999999 57999999
Q ss_pred CeEEEEEEcCCcc
Q psy10467 210 HRLVTLVMSGAQW 222 (304)
Q Consensus 210 gr~i~V~~~~~~~ 222 (304)
|+.|.|..+.++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999987653
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.5e-15 Score=124.94 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCC---CcccEEEEEecCHHHHHHHH-HhCCCccC---CeEE
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAG---RCTGVAYIQFVDKENAEKAL-LRHKEKIG---HRLV 213 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g---~~~G~afV~f~~~~~a~~A~-~~~~~~~~---gr~i 213 (304)
..++|||+|||+++|+++|+++|++||.|. .|.++.+..+ +++|||||+|.+.++|.+|+ .+|+..+. ++.|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY-EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 457899999999999999999999999998 6999888544 89999999999999999999 57887664 5666
Q ss_pred EEEEcC
Q psy10467 214 TLVMSG 219 (304)
Q Consensus 214 ~V~~~~ 219 (304)
.|..+.
T Consensus 81 ~~~~~~ 86 (175)
T 3nmr_A 81 QMKPAD 86 (175)
T ss_dssp EEEECG
T ss_pred EEcccc
Confidence 665543
No 177
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.5e-16 Score=117.80 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+.+|+++|+++|++||.|. .|.|+. ++|||||+|.+.++|++|+ .+|+..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLG-RVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3457899999999999999999999999997 576652 6789999999999999999 68999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7653
No 178
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=8.2e-16 Score=123.38 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceE------EEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGI------TIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRL 212 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v------~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~ 212 (304)
....+|||+|||+.+|+++|+++|++||.|.. + .+....+|+++|||||+|.+.++|.+|+ .+|+..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSS-ETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTC-HHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccc-ccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 56789999999999999999999999998873 3 1222358999999999999999999999 58999999999
Q ss_pred EEEEEcCCc
Q psy10467 213 VTLVMSGAQ 221 (304)
Q Consensus 213 i~V~~~~~~ 221 (304)
|.|..+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998764
No 179
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=9.7e-16 Score=114.49 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPY-ECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~-~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
....+|||+|||+ .+|+++|+++|++||.|. .|.+. +|||||+|.+.++|.+|+ .+|+..+.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC-EEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5678999999999 999999999999999998 57773 789999999999999999 5799999999999999
Q ss_pred cCCc
Q psy10467 218 SGAQ 221 (304)
Q Consensus 218 ~~~~ 221 (304)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8654
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.4e-16 Score=134.32 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecCHHHHHHHHH-hCCCccCCeEEEEEEc
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKALL-RHKEKIGHRLVTLVMS 218 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~~~~a~~A~~-~~~~~~~gr~i~V~~~ 218 (304)
..++|||+|||.++|+++|+++|+.||.|. .|.++.+ .+|+++|||||+|.+.++|.+|+. +|+..|+|+.|.|..+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIK-SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 356899999999999999999999999998 6999888 589999999999999999999995 7999999999999664
Q ss_pred C
Q psy10467 219 G 219 (304)
Q Consensus 219 ~ 219 (304)
.
T Consensus 106 ~ 106 (216)
T 2qfj_A 106 S 106 (216)
T ss_dssp S
T ss_pred C
Confidence 4
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=2.1e-15 Score=127.25 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcCC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA 220 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~~ 220 (304)
.++|||+|||+++|+++|+++|++||.|. .|.|+.+.+|+++|||||+|++.++|.+|+...+..++|+.|.|..+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEE-EEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEE-EEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 46899999999999999999999999998 6999999889999999999999999999998767799999999988654
No 182
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=2.3e-15 Score=110.96 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=61.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
....+|||+|||+++|+++|+++|++||.|. .|.|+.+ ++|||||+|++.++|+++.. ....+.|+.|.|..+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~-~v~i~~~----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVV-DVFIPKP----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCSS----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEeeC----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcC
Confidence 5678899999999999999999999999998 5888764 78999999999999984321 2344679999999987
Q ss_pred Cc
Q psy10467 220 AQ 221 (304)
Q Consensus 220 ~~ 221 (304)
++
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.3e-15 Score=113.64 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CC---CCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YA---GRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~---g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V 215 (304)
...++|||+|||+++|+++|+++|++||.|. +.++.+ .+ |+++|||||+|.+.++|++||... ..++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEe
Confidence 4567899999999999999999999999997 677766 34 799999999999999999999432 2377887777
Q ss_pred EEc
Q psy10467 216 VMS 218 (304)
Q Consensus 216 ~~~ 218 (304)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 184
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=6.3e-16 Score=127.04 Aligned_cols=77 Identities=8% Similarity=0.150 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceE------EEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEE
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGI------TIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVT 214 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v------~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~ 214 (304)
..++|||+|||+++|+++|+++|++||.+.. + .+.....++++|||||+|.+.++|.+|+.+|+..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g-~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGG-LTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTT-CCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcc-cccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 4578999999999999999999999943221 0 11111335678999999999999999998899999999999
Q ss_pred EEEc
Q psy10467 215 LVMS 218 (304)
Q Consensus 215 V~~~ 218 (304)
|..+
T Consensus 82 v~~~ 85 (172)
T 2g4b_A 82 IRRP 85 (172)
T ss_dssp EECC
T ss_pred ecCC
Confidence 9753
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=110.71 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEEEEEcC
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG 219 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~V~~~~ 219 (304)
...++|||+|||+++|+++|+++|++||.|. .|.++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|..+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVM-DVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCC-EEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCee-EEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 4568999999999999999999999999998 5887754 789999999999999876433 456699999998877
Q ss_pred Ccc
Q psy10467 220 AQW 222 (304)
Q Consensus 220 ~~~ 222 (304)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 186
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=108.57 Aligned_cols=75 Identities=8% Similarity=0.103 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|| ++|+++|+++|++||.|. .|.|. +++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~-~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII-DLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEE-EEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEE-EEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 56689999996 899999999999999997 57773 67899999999999999999 67999999999999998
Q ss_pred CCcc
Q psy10467 219 GAQW 222 (304)
Q Consensus 219 ~~~~ 222 (304)
.+..
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 187
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.9e-15 Score=115.46 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=67.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhcCCCccceEEEeeC-CCCCcccEEEEEecC----HHH----HHHHHH---hCCC
Q psy10467 143 CCMRLQGL----PYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVD----KEN----AEKALL---RHKE 206 (304)
Q Consensus 143 ~~v~v~nL----p~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~g~~~G~afV~f~~----~~~----a~~A~~---~~~~ 206 (304)
..|||+|| |+.+++++|+++|+.||.|. .+.++.| .||+++|||||+|.+ +++ |.+|+. +|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~-~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS-HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS-EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 46999999 99999999999999999998 6999999 799999999999996 433 788875 4999
Q ss_pred ccCCeEEEEEEcCC
Q psy10467 207 KIGHRLVTLVMSGA 220 (304)
Q Consensus 207 ~~~gr~i~V~~~~~ 220 (304)
.|+||.|+|.+...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999988654
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=3.3e-15 Score=109.14 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGL----E-------IVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~----g-------~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~ 208 (304)
...++|||+|||+++|+++|+++|++| | .|. .+.+.. .+|||||+|.+.++|.+|+.+|+..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~-~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL-AVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE-EEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce-EEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 456789999999999999999999999 7 676 466654 37999999999999999997799999
Q ss_pred CCeEEEEE
Q psy10467 209 GHRLVTLV 216 (304)
Q Consensus 209 ~gr~i~V~ 216 (304)
+|+.|.|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999986
No 189
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.9e-16 Score=118.54 Aligned_cols=72 Identities=29% Similarity=0.327 Sum_probs=58.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+||++||+||+.||.. +.+.+|.|+.|++|+++|||||+|.++++|++||++++..|+||+|+|..+...
T Consensus 24 Lp~~~te~dl~~~F~~----------~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 24 MPFSAMENDVRDFFHG----------LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CCSSCCHHHHHHHTTT----------SCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCCCCCHHHHHHHhcc----------CCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 4666666666655555 445679999999999999999999999999999987779999999999997655
Q ss_pred Cc
Q psy10467 81 SS 82 (304)
Q Consensus 81 ~~ 82 (304)
.+
T Consensus 94 ~~ 95 (109)
T 2dnn_A 94 QW 95 (109)
T ss_dssp HH
T ss_pred ch
Confidence 44
No 190
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.7e-15 Score=110.07 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceE-EEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGI-TIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVM 217 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v-~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~ 217 (304)
...++|||+|||+.+|+++|+++|++||.|. .+ .++.+. ..|.|||+|.+.++|.+|+ .+|+..|+|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4467899999999999999999999999998 57 466652 2344999999999999999 5899999999999999
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.+++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 88763
No 191
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.1e-15 Score=112.91 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCCcEEEE--cCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCcc-----CCe
Q psy10467 140 VDQCCMRL--QGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKI-----GHR 211 (304)
Q Consensus 140 ~~~~~v~v--~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~-----~gr 211 (304)
....+||| +||++++|+++|+++|++||.|. .|.|+. .+|||||+|++.++|++|+ .+||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~-~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE-EEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 77999999999999999999987 466653 3789999999999999999 6899988 789
Q ss_pred EEEEEEcCCc
Q psy10467 212 LVTLVMSGAQ 221 (304)
Q Consensus 212 ~i~V~~~~~~ 221 (304)
+|.|..+..-
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999887643
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=1.8e-14 Score=109.51 Aligned_cols=85 Identities=16% Similarity=0.050 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhcCCCccceEEEeeCC--CCCcccEEEEEecCHHHHHHHH-HhCCCccCCe
Q psy10467 140 VDQCCMRLQGLPY-----ECKKEDVEKFLEGLEIVPNGITIPHDY--AGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~-----~~t~~dl~~~F~~~g~v~~~v~~~~~~--~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr 211 (304)
..+++|+|+||.. +.+++||+++|++||.|. .|.|+.+. +++++|||||+|.+.++|.+|+ .+||..++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~-~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG-KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE-EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE-EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 5678999999963 347899999999999998 69998874 3689999999999999999999 7899999999
Q ss_pred EEEEEEcCCccccC
Q psy10467 212 LVTLVMSGAQWFLS 225 (304)
Q Consensus 212 ~i~V~~~~~~~~~~ 225 (304)
.|.|..+.......
T Consensus 85 ~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 85 VVKACFYNLDKFRV 98 (105)
T ss_dssp ECEEEECCHHHHHT
T ss_pred EEEEEEcCHHHhhh
Confidence 99999988765443
No 193
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1.2e-14 Score=118.53 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCC--eEEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH--RLVTLV 216 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V~ 216 (304)
....+|||+||++.+|+++|+++|++||.|. .|.|..+ .++|||||+|.+.++|++|+ .+||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~-~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEE-EEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 4456799999999999999999999999998 5877643 35789999999999999999 679999965 999999
Q ss_pred EcCCc
Q psy10467 217 MSGAQ 221 (304)
Q Consensus 217 ~~~~~ 221 (304)
++.+.
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 98875
No 194
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.9e-14 Score=112.99 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccE-EEEEecCHHHHHHHH-HhCCCccCC--eEEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGV-AYIQFVDKENAEKAL-LRHKEKIGH--RLVTL 215 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~-afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V 215 (304)
..-..|||+||++.+|+++|.++|++||.|. .|.+..+ .+|| |||+|.+.++|.+|+ .+||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~-~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEE-EEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEE-EEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 4446788999999999999999999999998 5877653 3678 999999999999999 789999988 99999
Q ss_pred EEcCCcc
Q psy10467 216 VMSGAQW 222 (304)
Q Consensus 216 ~~~~~~~ 222 (304)
..++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9988753
No 195
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=8.7e-15 Score=113.64 Aligned_cols=72 Identities=31% Similarity=0.528 Sum_probs=58.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~ 78 (304)
+||++|++||+.+|..|+.+. ++..|.|+.+++|+++|||||+|.++++|++||++++..|+||+|+|..+.
T Consensus 25 Lp~~~te~~l~~~F~~~G~~~------~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 25 LPWSCSIEDVQNFLSDCTIHD------GVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CCTTCCHHHHHHHTTTSCBTT------GGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCcc------CceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 467777777776666665511 034699999999999999999999999999999977799999999999854
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=3.4e-14 Score=125.30 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
...++|||+|||+++|+++|+++|+.||.|. .|.+. +++|||||+|.+.++|.+|+ .+|+..|.|+.|.|..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPS-EVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 5668999999999999999999999999998 57775 35799999999999999999 58999999999999886
Q ss_pred C
Q psy10467 219 G 219 (304)
Q Consensus 219 ~ 219 (304)
.
T Consensus 94 ~ 94 (261)
T 3sde_A 94 T 94 (261)
T ss_dssp C
T ss_pred c
Confidence 4
No 197
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-15 Score=113.28 Aligned_cols=65 Identities=35% Similarity=0.629 Sum_probs=53.9
Q ss_pred hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCC
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~ 81 (304)
..+|++||+++++..|.|+.|++|+++|||||+|.++++|++||++++..|++|.|+|..+....
T Consensus 29 e~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 29 ENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp HHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred HHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 34444555556555799999999999999999999999999999877799999999999866543
No 198
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=4.6e-14 Score=110.25 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=65.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccE-EEEEecCHHHHHHHH-HhCCCccCC--eEEEEEE
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGV-AYIQFVDKENAEKAL-LRHKEKIGH--RLVTLVM 217 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~-afV~f~~~~~a~~A~-~~~~~~~~g--r~i~V~~ 217 (304)
-..|||+||++.+|+++|+++|++||.|. .|.|... .|| |||+|.+.++|..|+ .+||..|.| +.|+|..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~-~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQ-RIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEE-EEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 34578999999999999999999999998 5877642 286 999999999999999 689999987 6999998
Q ss_pred cCCcc
Q psy10467 218 SGAQW 222 (304)
Q Consensus 218 ~~~~~ 222 (304)
+.+..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 87653
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=105.09 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=61.1
Q ss_pred CcE-EEEcCCCCCCCHHH----HHHHhhcCC-CccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEE
Q psy10467 142 QCC-MRLQGLPYECKKED----VEKFLEGLE-IVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVT 214 (304)
Q Consensus 142 ~~~-v~v~nLp~~~t~~d----l~~~F~~~g-~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~ 214 (304)
..+ |||+|||+.+++++ |.++|++|| .|. .| +| |+|||.|.+.++|.+|+ .+|+..|.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl-~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL-SI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE-EC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE-EE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 558999995 886 34 34 99999999999999999 6899999999999
Q ss_pred EEEcCCc
Q psy10467 215 LVMSGAQ 221 (304)
Q Consensus 215 V~~~~~~ 221 (304)
|..+...
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9998765
No 200
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-15 Score=118.90 Aligned_cols=76 Identities=29% Similarity=0.409 Sum_probs=60.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+||++||+||+.||..++.|. ..+.+|.|+.|.+|+++|||||+|.++++|++||++++..|++|+|+|..+...
T Consensus 31 Lp~~~te~dl~~~F~~~g~v~-----g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 31 LPFTATAEEVVAFFGQHCPIT-----GGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp CCTTCCHHHHHHHHHTTSCCT-----TGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred CCCCCCHHHHHHHHHhhCCcc-----CCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 467777777776666655431 002469999999999999999999999999999998779999999999987654
Q ss_pred C
Q psy10467 81 S 81 (304)
Q Consensus 81 ~ 81 (304)
+
T Consensus 106 e 106 (123)
T 2dha_A 106 E 106 (123)
T ss_dssp H
T ss_pred H
Confidence 4
No 201
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=4.8e-14 Score=109.95 Aligned_cols=74 Identities=8% Similarity=0.126 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V~~~ 218 (304)
....+|||+|| ++|+++|+++|++||.|. .|.+. +++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~-~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII-DLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCS-CEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEE-EEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 56789999996 699999999999999998 57775 67899999999999999999 67999999999999998
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
.+.
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 202
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.52 E-value=7.5e-15 Score=116.80 Aligned_cols=72 Identities=32% Similarity=0.543 Sum_probs=57.3
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~ 78 (304)
+||++||+||+.+|..++.+. ++.+|.|+.|++|+++|||||+|.++++|++||++++..|+||+|+|..+.
T Consensus 52 Lp~~~te~dL~~~F~~~G~v~------~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 52 LPWSCSVEDVQNFLSDCTIHD------GAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH 123 (136)
T ss_dssp CCTTCCHHHHHHHTTTCCCSS------SSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHhCCcC------ceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence 366666666666666655410 034699999999999999999999999999999966699999999999854
No 203
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.7e-15 Score=111.99 Aligned_cols=74 Identities=31% Similarity=0.476 Sum_probs=57.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+||++||+||+.+|..++.|. ..|.|+.+.+|+++|||||+|.++++|++||+.++..|++|+|+|..+...
T Consensus 23 Lp~~~te~~l~~~F~~~G~v~--------~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 23 LPFGCSKEEIVQFFSGLEIVP--------NGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CCTTCCHHHHHHHTTTCCEEE--------EEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred CCCCCCHHHHHHHHHhcCCcc--------eeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHH
Confidence 355666655555554444332 138888888999999999999999999999999779999999999997665
Q ss_pred Cc
Q psy10467 81 SS 82 (304)
Q Consensus 81 ~~ 82 (304)
++
T Consensus 95 ~~ 96 (104)
T 1wg5_A 95 EV 96 (104)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 204
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=2.1e-15 Score=118.25 Aligned_cols=70 Identities=37% Similarity=0.596 Sum_probs=56.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcc--eEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPV--NILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~--~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~ 78 (304)
+||++||+||+ +||+++++. +|.|+.|++|+++|||||+|.++++|++||++++..|+||+|+|..+.
T Consensus 50 Lp~~~te~dL~----------~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 50 LPFGCTKEEIV----------QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCTTCCHHHHH----------HHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCCCCCHHHHH----------HHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 35666666555 555555444 799999999999999999999999999999988899999999999865
Q ss_pred CC
Q psy10467 79 GT 80 (304)
Q Consensus 79 ~~ 80 (304)
..
T Consensus 120 ~~ 121 (126)
T 2hgm_A 120 QE 121 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=108.06 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++||+||..+|..+|.|. .|.|+.|+ +|+++|||||+|.++++|++||+. ++..++|++|.|..+.
T Consensus 27 Lp~~~te~~L~~~F~~~G~I~---------~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 27 LPQNMTQDELRSLFSSIGEVE---------SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEE---------EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467777777777666666555 59999887 599999999999999999999976 5599999999998864
No 206
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=109.91 Aligned_cols=73 Identities=30% Similarity=0.533 Sum_probs=57.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+||++|++||+.+|..||.+. ++..|.|+.|++|+++|||||+|.++++|++||++++..|+||+|+|..+..
T Consensus 19 Lp~~~te~~l~~~F~~~g~~~------~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 19 LPWSCTMEDVLNFFSDCRIRN------GENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp CCSSCCSHHHHHHTTTSCBTT------TTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCH
T ss_pred CCCCCCHHHHHHHHHhcCCcC------CcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCH
Confidence 466667666666666654411 0356999999999999999999999999999999767999999999998543
No 207
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-14 Score=107.38 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCcccccccccccccchh-hHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHc-C-CcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCL-LCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRH-K-SNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~-~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~-~-~~i~~r~I~V~~ 76 (304)
+|+++||+||+.+|..+| .|. +|+|+.|+ +|+++|||||+|.++++|++||+.+ + ..++||+|.|..
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~---------~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAR---------EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCS---------BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCEeE---------EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 588999999998888887 555 48898887 5899999999999999999999864 4 679999999998
Q ss_pred cCCCC
Q psy10467 77 EEGTS 81 (304)
Q Consensus 77 s~~~~ 81 (304)
+.+++
T Consensus 80 a~~~~ 84 (91)
T 2lxi_A 80 SDPKP 84 (91)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 76554
No 208
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.9e-13 Score=101.81 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCc
Q psy10467 140 VDQCCMRLQGLPYECK-----------KEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEK 207 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t-----------~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~ 207 (304)
...++|+|+||....+ +++|+++|++||.|. .|.| .+. .++|||||+|.+.++|.+|+ .+|+..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~-~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR-KLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCS-EEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEe-EEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 5678999999954433 689999999999998 5755 443 48999999999999999999 679999
Q ss_pred cCCeEEEEEEcCCc
Q psy10467 208 IGHRLVTLVMSGAQ 221 (304)
Q Consensus 208 ~~gr~i~V~~~~~~ 221 (304)
|+||.|.|..+.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998764
No 209
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3e-14 Score=109.78 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=57.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+||++|++||..+|..++.|. ..|.|+.|++|+++|||||+|.++++|++||+.++..|+|++|.|..+...
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v~--------~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 23 IPFSITKMDVLQFLEGIPVDE--------NAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp CCTTSCHHHHHHHTTTSCCCS--------TTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHH
T ss_pred cCCcCCHHHHHHHHHhCCCcC--------CeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHH
Confidence 356666666555555444330 349999999999999999999999999999999779999999999987654
Q ss_pred C
Q psy10467 81 S 81 (304)
Q Consensus 81 ~ 81 (304)
.
T Consensus 95 ~ 95 (114)
T 2cpy_A 95 D 95 (114)
T ss_dssp H
T ss_pred H
Confidence 4
No 210
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6.6e-14 Score=103.22 Aligned_cols=63 Identities=30% Similarity=0.578 Sum_probs=52.2
Q ss_pred hhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
.+|++||+.+.+..|.|+.+.+|+++|||||+|.++++|++||++++..|+|+.|.|..+...
T Consensus 25 ~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 25 KNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp HHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred HHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 344455555545679999998999999999999999999999995559999999999987654
No 211
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.44 E-value=9.2e-15 Score=116.68 Aligned_cols=67 Identities=36% Similarity=0.619 Sum_probs=55.3
Q ss_pred chhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCCc
Q psy10467 16 YCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82 (304)
Q Consensus 16 ~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~~ 82 (304)
+..+|++||+++++.+|.|+.|++|+++|||||+|+++++|++||++++..|++|+|+|..+...+.
T Consensus 59 te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 59 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 3344556666666667999999999999999999999999999997667999999999998766543
No 212
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=4e-14 Score=107.40 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=62.5
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEE
Q psy10467 147 LQGLPYECKKEDVEKFL------------EGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLV 213 (304)
Q Consensus 147 v~nLp~~~t~~dl~~~F------------~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i 213 (304)
+.|||+.+++++|+++| ++||.|. .|.|+.+.+|+++|||||+|.+.++|.+|+ .+||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~-~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE-EEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE-EEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778887777666 9999998 699998888999999999999999999999 689999999999
Q ss_pred EEEEc
Q psy10467 214 TLVMS 218 (304)
Q Consensus 214 ~V~~~ 218 (304)
.|..+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 213
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.42 E-value=6.3e-14 Score=103.25 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=51.8
Q ss_pred Ccccccccccccccchh--hHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 2 RFSFYVIDILIHITYCL--LCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~--~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
||++|+++|..+|..+| . +.+|.|+.|+ +|+++|||||+|.+.++|++||+.++ ..++|+.|.|..+
T Consensus 10 ~~~~t~~~l~~~F~~~G~~~---------v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 10 TWWTTDEDLTEAVHSLGVND---------ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp CTTCCHHHHHHHHHTTTCCC---------CCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred CCCCCHHHHHHHHHHhCCCc---------eEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 45555555555554444 3 3569999886 79999999999999999999997655 8999999999886
Q ss_pred CCC
Q psy10467 78 EGT 80 (304)
Q Consensus 78 ~~~ 80 (304)
.+.
T Consensus 81 ~~~ 83 (90)
T 3p5t_L 81 NKL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 214
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=2.4e-13 Score=103.20 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=70.2
Q ss_pred CCCcEEEEcCC--CCCC--------CHHHHHHHhhcCCCccceEEEeeCCC---CCcccEEEEEecCHHHHHHHH-HhCC
Q psy10467 140 VDQCCMRLQGL--PYEC--------KKEDVEKFLEGLEIVPNGITIPHDYA---GRCTGVAYIQFVDKENAEKAL-LRHK 205 (304)
Q Consensus 140 ~~~~~v~v~nL--p~~~--------t~~dl~~~F~~~g~v~~~v~~~~~~~---g~~~G~afV~f~~~~~a~~A~-~~~~ 205 (304)
.++++|.|.|+ |... .++||++.|++||.|. .|.|+.+.. ++++|+|||+|.+.++|.+|+ .+||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~-~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVK-SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEE-EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEE-EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 45688999998 3333 3479999999999998 698888743 478999999999999999999 7899
Q ss_pred CccCCeEEEEEEcCCccc
Q psy10467 206 EKIGHRLVTLVMSGAQWF 223 (304)
Q Consensus 206 ~~~~gr~i~V~~~~~~~~ 223 (304)
..++||.|.|........
T Consensus 82 ~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp CEETTEECEEEEECHHHH
T ss_pred CEeCCCEEEEEEeCHHHH
Confidence 999999999998876543
No 215
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=103.33 Aligned_cols=70 Identities=23% Similarity=0.178 Sum_probs=53.4
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-C----cCCCceEEEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-S----NMGDRYIELY 75 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~----~i~~r~I~V~ 75 (304)
||++|+++|+.+|..+|.| .+.+|+|++|+ +|+++|||||+|.++++|++||+.++ . .|+||+|.|.
T Consensus 18 ~~~~tee~L~~~F~~~G~i-------~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~ 90 (95)
T 2lkz_A 18 APHTVVDSIMTALSPYASL-------AVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD 90 (95)
T ss_dssp CTTCCHHHHHHHSTTTCCC-------CGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred CCcCCHHHHHHHHHhhCCc-------cEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence 5566666665555554421 14579999887 59999999999999999999998755 3 4899999998
Q ss_pred ecC
Q psy10467 76 MEE 78 (304)
Q Consensus 76 ~s~ 78 (304)
.+.
T Consensus 91 ~Ak 93 (95)
T 2lkz_A 91 FAK 93 (95)
T ss_dssp ECC
T ss_pred Ecc
Confidence 854
No 216
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.6e-13 Score=116.65 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCC---------CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCcc-
Q psy10467 140 VDQCCMRLQGLPYEC---------KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKI- 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~---------t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~- 208 (304)
....+|||+||+..+ ++++|+++|++||.|. .|.|+. ++|||||+|.+.++|+.|+ .+++..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~-~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID-RIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE-EEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE-EEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 567899999999998 7999999999999998 588874 5899999999999999999 7899999
Q ss_pred -----------CCeEEEEEEcCCc
Q psy10467 209 -----------GHRLVTLVMSGAQ 221 (304)
Q Consensus 209 -----------~gr~i~V~~~~~~ 221 (304)
.|+.|.|.++...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999998754
No 217
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=102.08 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. .|.|+.++ +|+++|||||+|.+.++|++||+.++ ..++|+.|.|..+.
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 16 LSYTSSEEDLEKLFSAYGPLS---------ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEE---------EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEe---------EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 356666666666666655444 59998887 79999999999999999999996655 89999999999976
Q ss_pred CCCc
Q psy10467 79 GTSS 82 (304)
Q Consensus 79 ~~~~ 82 (304)
....
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 6543
No 218
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.7e-14 Score=105.06 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=55.3
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s 77 (304)
+|+++|+++|..+|..+|.| .+|.|+.|++|+++|||||+|.++++|++||.+++..++|+.|.|..+
T Consensus 19 Lp~~~te~~L~~~F~~~G~v---------~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 19 FPTDATLDDIKEWLEDKGQV---------LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CCTTCCHHHHHHHHHTSSCE---------EEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred CCCCCCHHHHHHHHhhcCCE---------EEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35666666666555555544 469999998899999999999999999999996669999999999873
No 219
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=101.57 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=55.0
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
|+++|++||..+|..+|.| ..|.|+.+++|+++|||||+|.++++|++||+. ++..++|+.|.|..+.+.
T Consensus 26 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 26 PFSCTKEELEEICKAHGTV---------KDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp CTTCCHHHHHHHHTTTSCE---------EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHhCCCe---------EEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 4555555555544444433 569999999999999999999999999999976 458999999999986544
No 220
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=103.78 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=50.6
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
..+|+++|+.++ +.+|.|+.|+. |+++|||||+|.+.++|++||+.++ ..++|+.|.|..+..
T Consensus 20 e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 20 ETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred HHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 344555555554 35699999884 9999999999999999999998655 999999999988643
No 221
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.38 E-value=2e-13 Score=99.66 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=48.5
Q ss_pred hhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
.+|+++|+.++ +..|.|+.++ +|+++|||||+|.++++|++||+.++..|+|+.|.|..
T Consensus 26 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 26 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34445555553 3569999887 59999999999999999999998888889999999976
No 222
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.38 E-value=8.2e-14 Score=98.83 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=56.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
+|+++|+++|..+|..+|.|. .|.++.++ +|+++|||||+|.++++|++||++++..++|+.|.|..
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVD---------DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCS---------EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 467777777777777666555 58888887 69999999999999999999999777999999999876
No 223
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=100.53 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=55.5
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||++++..++|+.|.|..+...
T Consensus 19 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 19 PHNCGETELREYFKKFGVV---------TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CSSCCHHHHHHHHSSSSCE---------EEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4555555555555444443 469999886 589999999999999999999997669999999999987654
Q ss_pred C
Q psy10467 81 S 81 (304)
Q Consensus 81 ~ 81 (304)
.
T Consensus 90 ~ 90 (99)
T 2dgs_A 90 D 90 (99)
T ss_dssp C
T ss_pred c
Confidence 3
No 224
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-13 Score=107.57 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=53.9
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
||++|++||..+|..+|.|.+ .+.+..+.+|+++|||||+|.++++|++||++++..|+||+|.|..+...
T Consensus 34 p~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 34 PFEAENKHVIDFFKKLDIVED--------SIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp CTTCCHHHHHHHSCSSCBCTT--------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred CCCCCHHHHHHHHHhcCCccc--------eEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 556666555555555444432 25555667899999999999999999999996669999999999986543
No 225
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=102.87 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=56.4
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..+|.| ..|.|+.+++|+++|||||+|.+.++|++||+.++ ..++|+.|.|..+...
T Consensus 16 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 16 NRETNEKMLKAVFGKHGPI---------SEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp TTTCCHHHHHHHHHTSSCC---------SEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CCCCCHHHHHHHHHhcCCE---------EEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 5555555555555554443 56999999899999999999999999999998755 8999999999987655
Q ss_pred C
Q psy10467 81 S 81 (304)
Q Consensus 81 ~ 81 (304)
.
T Consensus 87 ~ 87 (116)
T 2fy1_A 87 S 87 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 226
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=97.91 Aligned_cols=70 Identities=21% Similarity=0.162 Sum_probs=55.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|++||..+|..+|.|. +|.|+.++ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+.
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 14 LSPEITTAAIAAAFAPFGRIS---------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEe---------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 356666666666666655544 59999886 799999999999999999999986 5589999999998865
Q ss_pred C
Q psy10467 79 G 79 (304)
Q Consensus 79 ~ 79 (304)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 227
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.36 E-value=6.5e-13 Score=95.92 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=50.3
Q ss_pred hhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ +.+|.|+.++ +|+++|||||+|.++++|++|++. ++..++|+.|.|..+.+.
T Consensus 16 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 16 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 34445555553 3569999885 699999999999999999999986 558999999999986544
No 228
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.36 E-value=3.9e-13 Score=99.76 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=55.3
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s 77 (304)
+|+++++++|..+|..+|.|. .|.|+.+++|+++|||||+|.++++|++||+. ++..++|+.|.|..+
T Consensus 24 lp~~~~~~~l~~~F~~~G~i~---------~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 24 LEARVREEILYELFLQAGPLT---------KVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 356666666666665555444 59999999999999999999999999999985 558999999999874
No 229
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.9e-12 Score=100.32 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhcCCCccceEEEeeCC-----CCCcccEEEEEecCHHHHHHHH-HhCCCcc
Q psy10467 140 VDQCCMRLQGLPY-----ECKKEDVEKFLEGLEIVPNGITIPHDY-----AGRCTGVAYIQFVDKENAEKAL-LRHKEKI 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~-----~~t~~dl~~~F~~~g~v~~~v~~~~~~-----~g~~~G~afV~f~~~~~a~~A~-~~~~~~~ 208 (304)
..+++|+|+||-. +-.++||++.|++||.|. .|.|+.+. +++++|+|||+|.+.++|.+|+ .+||..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~-~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEE-EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEe-EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3568899999942 224689999999999998 69988873 4578899999999999999999 7899999
Q ss_pred CCeEEEEEEcCCccc
Q psy10467 209 GHRLVTLVMSGAQWF 223 (304)
Q Consensus 209 ~gr~i~V~~~~~~~~ 223 (304)
+||.|.|..+.....
T Consensus 97 ~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 97 AGRKVVAEVYDQERF 111 (118)
T ss_dssp TTEECEEEEECHHHH
T ss_pred CCcEEEEEEcChHhc
Confidence 999999998876543
No 230
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=5.5e-13 Score=99.56 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=51.5
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeC-CCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTD-DAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d-~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|+++|++||+.+|..++.|. .+.++.+ .+|+++|||||+|.++++|++||+.++ ..|+|+.|.|..+..
T Consensus 24 p~~~t~~~l~~~F~~~G~v~---------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 24 PFTVSIDEILDFFYGYQVIP---------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp CTTCCHHHHHHHTTTSCCCT---------TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCCCCHHHHHHHHHHcCCcc---------ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 45555555554444444333 3555554 579999999999999999999997755 899999999998654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 95 ~ 95 (98)
T 2cqp_A 95 P 95 (98)
T ss_dssp S
T ss_pred C
Confidence 3
No 231
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=3e-13 Score=96.25 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=55.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s 77 (304)
+|+++++++|..+|..+|.| ..|.++.++ +|+++|||||+|.++++|++||+.++..++|+.|.|..+
T Consensus 8 lp~~~t~~~l~~~F~~~G~v---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 8 LSWQTTQEGLREYFGQFGEV---------KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCSSCCSHHHHHHHTTTSCC---------CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCE---------EEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 46667777766666655544 459999887 589999999999999999999999889999999998764
No 232
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.34 E-value=5e-13 Score=102.09 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=55.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+.++..++|+.|.|..+...
T Consensus 34 p~~~te~~L~~~F~~~G~i---------~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 34 SWQTTQEGLREYFGQFGEV---------KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CTTCCHHHHHHHHTTTSCE---------EEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHccCCe---------EEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCC
Confidence 4555555555444444443 469999887 599999999999999999999999889999999999986654
Q ss_pred C
Q psy10467 81 S 81 (304)
Q Consensus 81 ~ 81 (304)
.
T Consensus 105 ~ 105 (109)
T 2rs2_A 105 R 105 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 233
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=100.52 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=51.3
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ +..|.|+.+++|+++|||||+|.+.++|++||+. ++..|+|+.|.|..+...
T Consensus 30 ~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 30 KKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 44555555553 3569999999999999999999999999999986 558999999999986543
No 234
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.2e-13 Score=99.71 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=56.8
Q ss_pred CCcccccccccccccc-hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-Cc-CCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITY-CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SN-MGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~-~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~-i~~r~I~V~~s 77 (304)
+|+++|+++|..+|.. +|.|. .|.|+.+++|+++|||||+|.+.++|++||+.++ .. ++|+.|.|..+
T Consensus 17 Lp~~~t~~~l~~~F~~~~G~v~---------~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 17 LTPDVDDGMLYEFFVKVYPSCR---------GGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCTTCCHHHHHHHHHHHCTTEE---------EEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCCCCCHHHHHHHHHHhCCCeE---------EEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3556666666655555 55444 6999999999999999999999999999999755 77 99999999886
Q ss_pred CCCC
Q psy10467 78 EGTS 81 (304)
Q Consensus 78 ~~~~ 81 (304)
....
T Consensus 88 ~~~~ 91 (104)
T 2dhg_A 88 IPKA 91 (104)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5443
No 235
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=98.33 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=50.5
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~~ 81 (304)
.+|+++|+.++ +..|.|+.+ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+....
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 30 ERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred HHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 34445555553 356999988 899999999999999999999986 5589999999999876543
No 236
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.34 E-value=1e-12 Score=99.29 Aligned_cols=64 Identities=23% Similarity=0.220 Sum_probs=51.0
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCC---ceEEEEecCCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGD---RYIELYMEEGTS 81 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~---r~I~V~~s~~~~ 81 (304)
.+|+++|+.++ +..|.|+.+++|+++|||||+|.+.++|++||+.++ ..+.+ +.|.|..+....
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 30 EDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 44555555553 456999999999999999999999999999998654 77776 999999876543
No 237
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.1e-12 Score=98.86 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=55.0
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+.++ ..|+|+.|.|..+..
T Consensus 24 p~~~t~~~l~~~f~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 24 SEDTRETDLQELFRPFGSI---------SRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp CTTCCHHHHHTTSTTTCCE---------EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCCCCHHHHHHHHHhCCCe---------EEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 5555555555555554444 469999886 79999999999999999999999655 889999999998655
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 95 ~ 95 (103)
T 2cq0_A 95 S 95 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 238
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.33 E-value=5.3e-13 Score=99.00 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=50.6
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeC-CCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTD-DAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d-~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
|+++|++||+.+|..++.|. .+.++.+ .+|+++|||||+|.++++|++||+. ++..|+|+.|.|..+.
T Consensus 24 p~~~t~~~l~~~F~~~G~i~---------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 24 PFTVSIDEILDFFYGYQVIP---------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CTTCCHHHHHHHTTTSCBCT---------TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCHHHHHHHHHhcCCcc---------ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 55555555555554444433 3666655 4789999999999999999999986 5599999999998753
No 239
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.33 E-value=7.3e-13 Score=100.54 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=54.0
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
|+++|+++|..+|..+|.| ..|.|+.+++|+++|||||+|.++++|++||+. ++..++|+.|.|..+.
T Consensus 38 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 38 DFGVSDADIQELFAEFGTL---------KKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CTTCCHHHHHHHHHTTSCE---------EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5555555555555554443 469999999999999999999999999999986 5599999999998753
No 240
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.8e-13 Score=100.26 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=52.2
Q ss_pred hhhHHhhcCCCCcceEEEeeCCC--CCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCC
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDA--GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~--Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~ 81 (304)
..+|+++|+.+++..|.|+.++. |+++|||||+|.++++|++||.+++..|+|+.|.|..+....
T Consensus 29 ~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 29 EESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp HHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCC
Confidence 34455556655566799998874 899999999999999999999556699999999999866543
No 241
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.33 E-value=6.1e-13 Score=97.38 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=57.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+.++ +|+++|||||+|.++++|++||..++..++|+.|.|..+..
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 14 VDYGATAEELEAHFHGCGSVN---------RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp CCTTCCHHHHHHHHGGGCCEE---------EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCCCCCHHHHHHHHHhCCCEE---------EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 467777777777766666555 59999886 79999999999999999999995566999999999998543
No 242
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.33 E-value=4.5e-13 Score=100.66 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=49.6
Q ss_pred hhHHhhcCCCCcceEEEeeCC--CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 18 LLCSQFFKPIVPVNILLLTDD--AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 18 ~~I~~fF~~~~~~~i~i~~d~--~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
.+|+++|+.+++..|.|+.++ +|+++|||||+|.+.++|++||.+++..++|+.|.|..+..
T Consensus 34 ~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 34 ESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp SHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred HHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence 344455555555569999886 79999999999999999999995566999999999988654
No 243
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.33 E-value=1.6e-13 Score=97.29 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=57.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
+|+++|+++|..+|..+|.|. +|.++.++ +|+++|||||+|.++++|++||+.++..++|+.|.|..
T Consensus 7 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 7 LSPDTPEEKIREYFGGFGEVE---------SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CCSSCCHHHHHHHHHHHSCCS---------EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 477888888888887777665 48888876 58999999999999999999999877999999998875
No 244
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.1e-12 Score=98.86 Aligned_cols=64 Identities=27% Similarity=0.352 Sum_probs=52.6
Q ss_pred hhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
..+|+++|+.+++..|.|+.++ +|+++|||||+|.++++|++||++++..|+|+.|.|..+.+.
T Consensus 29 ~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 29 QGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp HHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence 3445566666666679999887 599999999999999999999955669999999999986654
No 245
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=97.32 Aligned_cols=70 Identities=23% Similarity=0.212 Sum_probs=53.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+..
T Consensus 14 p~~~t~~~l~~~f~~~G~v---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 14 HFNITEDMLRGIFEPFGKI---------DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CTTCCHHHHHHHHTTTSCE---------EEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CCCCCHHHHHHHHHhcCCE---------eEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 4555555555444444433 569999887 589999999999999999999985 55999999999998654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 85 ~ 85 (95)
T 2dnz_A 85 R 85 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 246
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=7.5e-13 Score=99.57 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=50.8
Q ss_pred hhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~~ 81 (304)
.+|+++|+.++ +..|.|+.++ +|+++|||||+|.++++|++||+. ++..|+|+.|.|..+.+..
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 27 KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp HHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 44455555553 3569998885 689999999999999999999976 5589999999999876554
No 247
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.32 E-value=1.1e-12 Score=101.02 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=55.1
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|+.+|..+|.| ..|.|+.++ +|+++|||||+|.+.++|++||+. ++..|+|+.|.|..+..
T Consensus 34 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 34 PQEFGDQDLLQMFMPFGNV---------VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp CSSCCHHHHHHHHGGGSCC---------SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 5555555555555554444 469999887 799999999999999999999976 45899999999998655
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 105 ~ 105 (115)
T 2cpz_A 105 K 105 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 248
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1e-12 Score=99.38 Aligned_cols=71 Identities=18% Similarity=0.096 Sum_probs=55.5
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+.++ ..|+|+.|.|..+..
T Consensus 24 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 24 DEKVSEPLLWELFLQAGPV---------VNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp CTTCCHHHHHHHHHTTSCE---------EEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 5555555555555554444 469998887 79999999999999999999999755 889999999999765
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 95 ~~ 96 (105)
T 1x5u_A 95 HN 96 (105)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 249
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.3e-12 Score=100.69 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=56.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|+.+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+.++..|+|+.|.|..+..
T Consensus 25 lp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 25 LPYHTTDASLRKYFEGFGDI---------EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 95 (116)
T ss_dssp CCSSCCHHHHHHHHHTTSCE---------EEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred CCCCCCHHHHHHHHHhCCCe---------eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEccc
Confidence 35566666665555555444 469999886 58999999999999999999999888789999999999755
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 96 ~ 96 (116)
T 2cqd_A 96 G 96 (116)
T ss_dssp T
T ss_pred C
Confidence 4
No 250
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-11 Score=92.25 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCcEEEEcCCC-------CCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEE
Q psy10467 141 DQCCMRLQGLP-------YECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLV 213 (304)
Q Consensus 141 ~~~~v~v~nLp-------~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i 213 (304)
...+|.|.-.. ..+|+++|+++|++||.|. .|.|+ ++++|||||+|++.++|+.|+.. ...+.|++|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~-~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVL-NLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEE-EEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEE-EEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 34567776543 4689999999999999998 58777 47899999999999999999965 444689999
Q ss_pred EEEEcCCc
Q psy10467 214 TLVMSGAQ 221 (304)
Q Consensus 214 ~V~~~~~~ 221 (304)
.|.++...
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99987654
No 251
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.32 E-value=1.6e-12 Score=99.98 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=57.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++|++||..+|..+|.|. .|.|+.++ +|+++|||||+|.++++|++||+.++ ..|+|+.|.|..+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 23 LSPEITTEDIKAAFAPFGRIS---------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 356666666666666555544 59999886 79999999999999999999998755 88999999999876
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 94 ~~~ 96 (115)
T 2dgo_A 94 RKP 96 (115)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 252
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=8.1e-13 Score=99.26 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=55.3
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+.+ ++|||||+|.++++|++||+. ++..++|+.|.|..+..
T Consensus 8 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYYGPLR---------TVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CCSSCSHHHHHHHHHHHCCCS---------EEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 467788888887777776655 5888866 789999999999999999986 55899999999998655
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 75 ~ 75 (101)
T 2hvz_A 75 M 75 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 253
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=8.8e-13 Score=97.99 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=55.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceE-EEeeC-CCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNI-LLLTD-DAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i-~i~~d-~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s 77 (304)
+|+++|+++|..+|..+|.|. .| .|+.+ .+|+++|||||+|.++++|++||+. ++..++|+.|.|..+
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~---------~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 13 LDPEIDEKLLYDTFSAFGVIL---------QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCBS---------SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCCCCHHHHHHHHHhcCCee---------EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 355666666555555554444 57 88888 4799999999999999999999996 448899999999987
Q ss_pred CCCC
Q psy10467 78 EGTS 81 (304)
Q Consensus 78 ~~~~ 81 (304)
.+..
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 254
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.31 E-value=1.9e-12 Score=102.94 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++|++||..+|..+|.|. +|.|+.++ +|+++|||||+|.+.++|++||+.++ ..|+|+.|.|..+.
T Consensus 50 Lp~~~~~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 50 IPTTVDEVQLRQLFERYGPIE---------SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp CSTTCCHHHHHHHHHHHSCEE---------EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 366777777776666666555 59998886 58999999999999999999998755 88999999999876
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 121 ~~~ 123 (139)
T 1u6f_A 121 SGH 123 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 255
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=5.7e-13 Score=100.82 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+.++..|+|+.|.|..+.+
T Consensus 24 lp~~~t~~~l~~~F~~~G~v---------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQYGEV---------VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCE---------EEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCe---------EEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence 35566666665555555444 459999886 68999999999999999999999966999999999988665
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 95 ~~ 96 (105)
T 2dh8_A 95 RG 96 (105)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 256
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.3e-12 Score=96.82 Aligned_cols=68 Identities=24% Similarity=0.207 Sum_probs=53.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+. ++..++|+.|.|..+.
T Consensus 24 p~~~t~~~l~~~f~~~G~v---------~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 24 SLYTTERDLREVFSKYGPI---------ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp CSSCCHHHHHHHHHTTSCE---------EEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCCCHHHHHHHHHhcCCe---------eEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 5556666555555554444 469999887 489999999999999999999986 5589999999998753
No 257
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=106.33 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCcccccccccccccchh--hHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCL--LCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~--~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
+||++|++||..+|..+| .| .+|.|+.|+ +|+++|||||+|.+.++|++||+.++ ..|+|+.|.|..
T Consensus 63 Lp~~~te~~L~~~F~~~G~i~v---------~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 63 FSWWTTDQQLIQVIRSIGVYDV---------VELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCE---------EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCCCCHHHHHHHHHHHCCccE---------EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 356666666666666555 44 469999886 79999999999999999999999855 999999999998
Q ss_pred cCC
Q psy10467 77 EEG 79 (304)
Q Consensus 77 s~~ 79 (304)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 543
No 258
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.3e-12 Score=98.30 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=57.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. .|.|+.++ +|+++|||||+|.++++|++||+. ++..++|+.|.|..+.
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 20 LSFDTNEQSLEQVFSKYGQIS---------EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCTTCCHHHHHHHHHHHSCCC---------EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 466777777777776666555 59998876 689999999999999999999966 4588999999998865
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 91 ~~~ 93 (102)
T 1x5s_A 91 KSS 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 259
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.6e-12 Score=98.39 Aligned_cols=69 Identities=20% Similarity=0.063 Sum_probs=54.7
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+..
T Consensus 32 p~~~t~~~l~~~f~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 32 HEEATEEDIHDKFAEYGEI---------KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp CTTCCHHHHHHHHGGGSCE---------EEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCCCCHHHHHHHHhccCCe---------EEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 5566666666555555544 459999887 589999999999999999999986 55899999999988654
No 260
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.7e-12 Score=96.68 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+.++ +|+++|||||+|.+.++|++||.. +..|+|+.|.|..+..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 23 LPWKTTEQDLKEYFSTFGEVL---------MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCSSCCHHHHHHHHGGGSCEE---------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECCCT
T ss_pred CCCcCCHHHHHHHHHhcCCeE---------EEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEecCC
Confidence 356666666666666555444 59999886 599999999999999999999983 6789999999998765
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 93 ~~ 94 (103)
T 2cqg_A 93 KQ 94 (103)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 261
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.30 E-value=1.2e-12 Score=97.45 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++++++|..+|..+|.|. +|.|+.++ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+.
T Consensus 10 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSNVGPVI---------NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCEE---------EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 356666666666555555444 59998886 589999999999999999999976 5589999999999876
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 262
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=96.49 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=49.0
Q ss_pred hhhHHhhcCCCC-cce--------EEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEec
Q psy10467 17 CLLCSQFFKPIV-PVN--------ILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYME 77 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~--------i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s 77 (304)
..+|+++|+.++ +.. |.|+.++ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+
T Consensus 27 ~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 27 IESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 344555566554 345 8898886 699999999999999999999985 559999999999874
No 263
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.7e-12 Score=96.74 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=55.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.| ..|.|+.++.+ ++|||||+|.+.++|++||.. ++..|+|+.|.|..+..
T Consensus 23 lp~~~t~~~l~~~f~~~G~v---------~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQFGKI---------LDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCTTCCHHHHHHHGGGTSCE---------EEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCCCHHHHHHHHHhcCCe---------EEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 35566666665555555444 46999888766 999999999999999999986 55889999999999766
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 93 ~~ 94 (103)
T 2cq3_A 93 RV 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 264
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=1.6e-12 Score=96.98 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCC--C--CceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA--G--RSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELY 75 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~--G--r~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~ 75 (304)
+|+++|+++|..+|..+|.|. .|.|+.+++ | +++|||||+|.+.++|++||+.++ ..|+|+.|.|.
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 13 LNFSTTEETLKGVFSKVGAIK---------SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCTTCCHHHHHHHHHTTSCEE---------EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 356666666666665555444 588887764 4 899999999999999999999755 89999999999
Q ss_pred ecCCCC
Q psy10467 76 MEEGTS 81 (304)
Q Consensus 76 ~s~~~~ 81 (304)
.+....
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 865543
No 265
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=7.8e-13 Score=100.20 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=65.6
Q ss_pred Ccccccccccccc-cchhhHHhhc-CCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 2 RFSFYVIDILIHI-TYCLLCSQFF-KPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 2 ~~~~te~dl~~~~-~~~~~I~~fF-~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
+|.+++++|..+| .-..+|++.| ++|| +.+|.|+.+.+|+++|||||+|.++++|++|++.++ ..++||.|.|..+
T Consensus 24 ~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 24 RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 4678889998777 4578899999 9996 588999988889999999999999999999998654 9999999988763
No 266
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=99.01 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=50.5
Q ss_pred hhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
..+|+++|+.++ +..|.|+.++ +|+++|||||+|.++++|++||+. ++..++|+.|.|..+.++
T Consensus 40 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 40 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 344555555553 3569998885 689999999999999999999976 558999999999886543
No 267
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.4e-12 Score=100.61 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=52.5
Q ss_pred hhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~~ 81 (304)
..+|+++|+.++ +..|.|+.++ +|+++|||||+|.++++|++||+.++..|+|+.|.|..+....
T Consensus 41 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 41 EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCc
Confidence 344555555553 4579999886 5899999999999999999999986689999999999866543
No 268
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2e-12 Score=99.09 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=50.6
Q ss_pred hhHHhhcCCCCc-c--------eEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCCC
Q psy10467 18 LLCSQFFKPIVP-V--------NILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 18 ~~I~~fF~~~~~-~--------~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~~ 81 (304)
.+|+++|+.++. . .|.|+.++ +|+++|||||+|.++++|++||+. ++..|+|+.|.|..+....
T Consensus 30 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 30 DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred HHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 345555555543 2 48898884 799999999999999999999986 5589999999999865543
No 269
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=95.97 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=47.9
Q ss_pred hhHHhhcCCCC-cceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
.+|+++|+.++ +..|.|+.++. |+++|||||+|.++++|++||+.++ ..++|+.|.|..+
T Consensus 31 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 31 NDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp HHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34455555553 35699988874 8999999999999999999997655 8899999999874
No 270
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.28 E-value=1.2e-12 Score=95.00 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=53.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeC-CCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTD-DAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d-~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s 77 (304)
+|+++++++|..+|..+|.| ..|.|+.+ .+|+++|||||+|.++++|++||+. ++..++|+.|.|..+
T Consensus 15 l~~~~~~~~l~~~f~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 15 LAEEVDDKVLHAAFIPFGDI---------TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCTTCCHHHHHHHHGGGSCE---------EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCHHHHHHHHhccCCE---------EEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35666666666555555544 45888887 4789999999999999999999966 559999999999874
No 271
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.7e-12 Score=98.39 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=56.0
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC--CCCceeeEEEEeCCHHHHHHHHHHc--CCcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD--AGRSSGEADVEFSSVDDAQRALQRH--KSNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~--~Gr~~G~aFV~F~s~edA~~Al~~~--~~~i~~r~I~V~~ 76 (304)
+|+++|+++|..+|..+|.| ..|.|+.+. +|+++|||||+|.+.++|++||..+ +..|+|+.|.|..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 23 IPFQANQREIRELFSTFGEL---------KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCE---------EEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCcCCHHHHHHHHHccCCe---------EEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 35566666655555555444 459998873 7999999999999999999999875 5899999999998
Q ss_pred cCCCC
Q psy10467 77 EEGTS 81 (304)
Q Consensus 77 s~~~~ 81 (304)
+....
T Consensus 94 a~~~~ 98 (107)
T 2cph_A 94 ADSEV 98 (107)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 272
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.28 E-value=3.2e-12 Score=99.73 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=55.6
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
|+++++++|..+|..+|. +..|.|+.+++|+++|||||+|.+.++|++||+. ++..++|+.|.|..+...
T Consensus 44 p~~~t~~~l~~~F~~~G~---------v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 44 DFGVSDADIQELFAEFGT---------LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CSSCCHHHHHHHHHTTSC---------CSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCCCCHHHHHHHHHhcCC---------eeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 455555555555544443 3569999988999999999999999999999985 558999999999987654
Q ss_pred C
Q psy10467 81 S 81 (304)
Q Consensus 81 ~ 81 (304)
.
T Consensus 115 ~ 115 (124)
T 2kt5_A 115 I 115 (124)
T ss_dssp T
T ss_pred C
Confidence 3
No 273
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.2e-12 Score=97.29 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=56.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++++++|..+|..+|.| ..|.|+.++ +|+++|||||+|.+.++|++||+.++ ..++|+.|.|..+.
T Consensus 16 lp~~~~~~~l~~~f~~~G~i---------~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 16 IPYEATEEQLKDIFSEVGPV---------VSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp CCTTSCHHHHHHHHHTTSCC---------SEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CCCcCCHHHHHHHHHhcCCe---------eEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35666666666555555544 469999886 78999999999999999999998655 89999999999876
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 274
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.28 E-value=8.7e-13 Score=99.13 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=52.5
Q ss_pred ccccccccccccchhhHHhhcCCCCcceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHH-cCCcCCC-ceEEEEecCC
Q psy10467 4 SFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQR-HKSNMGD-RYIELYMEEG 79 (304)
Q Consensus 4 ~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~-r~I~V~~s~~ 79 (304)
++++++|..+|..+|.| .+|.|+.|+. |+++|||||+|.++++|++||+. ++..++| +.|.|..+.+
T Consensus 23 ~~~~~~L~~~F~~~G~i---------~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKV---------VNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHHHHHTTSCE---------EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHHHHHHhcCCE---------eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 55555555555554444 4699998885 99999999999999999999976 5588998 9999988543
No 275
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=98.27 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=49.8
Q ss_pred hhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ +..|.|+.++ +|+++|||||+|.++++|++||+. ++..++|+.|.|..+...
T Consensus 28 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 28 DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp HHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 34445555553 3568888887 489999999999999999999985 558999999999986544
No 276
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.2e-12 Score=100.51 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=53.5
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCC-CCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~-Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.| ..|.|+.++. |+++|||||+|.+.++|++||.+++..|+|+.|.|..+..
T Consensus 34 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 34 AARIRPRDLEDFFSAVGKV---------RDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp CTTCCHHHHHHHHTTTSCE---------EEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCE---------eEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 4555555555555444443 4699998875 8999999999999999999996566999999999988543
No 277
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.27 E-value=2.6e-12 Score=97.22 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=57.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcC---CCceEEEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNM---GDRYIELY 75 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i---~~r~I~V~ 75 (304)
+|+++|+++|+.+|..+|.|. .|.|+.++ +|+++|||||+|.+.++|++||+.++ ..+ +++.|.|.
T Consensus 21 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 21 IPRNLDEKDLKPLFEEFGKIY---------ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp CCTTCCHHHHHHHHHHHSCCC---------EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCCCCHHHHHHHHHhcCCee---------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 467777777777777766555 59998887 58999999999999999999998655 666 88999999
Q ss_pred ecCCCC
Q psy10467 76 MEEGTS 81 (304)
Q Consensus 76 ~s~~~~ 81 (304)
.+....
T Consensus 92 ~a~~~~ 97 (106)
T 2dgp_A 92 PADSES 97 (106)
T ss_dssp ECCCCS
T ss_pred ECCccc
Confidence 866543
No 278
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.27 E-value=2.1e-12 Score=95.10 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=53.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|+.+|..+|.| ..|.|+.+ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+..
T Consensus 16 lp~~~t~~~l~~~f~~~G~v---------~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNECGHV---------LYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp CCTTCCHHHHHHHHHTTSCE---------EEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCCCCHHHHHHHHHhcCCE---------EEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 35566666665555555444 45888874 789999999999999999999986 55889999999988654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 279
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.27 E-value=2.5e-12 Score=101.23 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=50.3
Q ss_pred hhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHc-CCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRH-KSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~-~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ +..|.|+.++ +|+++|||||+|.++++|++||+.+ +..|+|+.|.|..+...
T Consensus 61 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 61 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 34555555554 3569999886 5899999999999999999999864 48999999999886543
No 280
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.26 E-value=2.3e-12 Score=98.25 Aligned_cols=71 Identities=20% Similarity=0.047 Sum_probs=56.1
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. .|.|+.++ +|+++|||||+|.+.++|++||.. ++..++|+.|.|..+.
T Consensus 34 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 34 IHEEAQEDEIQEKFCDYGEIK---------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 356666666666666655544 58888886 689999999999999999999985 5589999999998865
Q ss_pred CC
Q psy10467 79 GT 80 (304)
Q Consensus 79 ~~ 80 (304)
..
T Consensus 105 ~~ 106 (110)
T 1oo0_B 105 VK 106 (110)
T ss_dssp ES
T ss_pred cC
Confidence 43
No 281
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=2.8e-12 Score=97.83 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=55.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHc-------CCcCCCceEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRH-------KSNMGDRYIE 73 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~-------~~~i~~r~I~ 73 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.+.++|++||+.+ +..|+|+.|.
T Consensus 24 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 24 SFDSEEEALGEVLQQFGDL---------KYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CTTCCHHHHHHHHHTTSCE---------EEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 5566666666555555544 469998886 5899999999999999999999864 6789999999
Q ss_pred EEecCCC
Q psy10467 74 LYMEEGT 80 (304)
Q Consensus 74 V~~s~~~ 80 (304)
|..+.+.
T Consensus 95 v~~a~~~ 101 (111)
T 1x4h_A 95 VDLAVTR 101 (111)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9986654
No 282
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.26 E-value=1.8e-12 Score=99.66 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=50.1
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s 77 (304)
+|+++|+++|..+|..+|.| ..|.|+.+ +.++|||||+|.+.++|++||.. ++..++|+.|.|..+
T Consensus 16 lp~~~t~~~l~~~F~~~G~v---------~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 16 LPYKITAEEMYDIFGKYGPI---------RQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCTTCCHHHHHHHHHTTSCE---------EEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCe---------EEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35566666655555555444 45888754 56799999999999999999985 559999999999884
No 283
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=4.1e-12 Score=97.23 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=53.7
Q ss_pred CcccccccccccccchhhHHhhcCCCC-cceEEEeeCCC----CCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDDA----GRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELY 75 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~----Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~ 75 (304)
|++++++||+. |+++|+.++ +..|.|+.++. ++++|||||+|.++++|++||+. ++..|+|+.|.|.
T Consensus 24 p~~~~~~~l~~-------~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 96 (111)
T 2cpi_A 24 SQRLADPEVLK-------RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 96 (111)
T ss_dssp CTTTCCHHHHH-------STTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCHHHHHH-------HHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence 55566665550 115555554 35688887763 36779999999999999999987 5588999999999
Q ss_pred ecCCCC
Q psy10467 76 MEEGTS 81 (304)
Q Consensus 76 ~s~~~~ 81 (304)
.+....
T Consensus 97 ~a~~k~ 102 (111)
T 2cpi_A 97 LGTTKY 102 (111)
T ss_dssp SCCCCS
T ss_pred eccccc
Confidence 876543
No 284
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.25 E-value=2.4e-12 Score=100.35 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=53.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
|+++|++||..+|..+|.| .+|.|+.++ +|+++|||||+|.+.++|++||++++..|+|+.|.|..+..
T Consensus 45 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 45 DYGSTAQDLEAHFSSCGSI---------NRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp CTTCCHHHHHHHHHTTSCE---------EEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 4555555555555544443 469998885 79999999999999999999996566999999999988543
No 285
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=8.4e-12 Score=93.61 Aligned_cols=61 Identities=26% Similarity=0.359 Sum_probs=49.2
Q ss_pred hhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ .|.++.+.+|+++|||||+|.++++|++||+.++ ..|+|+.|.|..+...
T Consensus 30 ~~l~~~F~~~g--~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 30 ETLQEVFEKAT--FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp HHHHHHCSSCS--EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred HHHHHHHHhCC--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 44555555555 3567777889999999999999999999998655 8899999999987654
No 286
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=95.69 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=53.1
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCce----EEEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRY----IELY 75 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~----I~V~ 75 (304)
|+++|+++|..+|..+|.|. ..|.|+.++ +|+++|||||+|.++++|++||+.++ ..++|+. |.|.
T Consensus 18 p~~~t~~~l~~~F~~~G~i~--------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~ 89 (99)
T 2div_A 18 EPYMDENFISRAFATMGETV--------MSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLN 89 (99)
T ss_dssp CTTCCHHHHHHHHHHTTCCC--------CEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEE
T ss_pred CCCCCHHHHHHHHHHhCCcc--------eEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEe
Confidence 45555555555555544333 169999887 79999999999999999999999655 8899998 8888
Q ss_pred ecCC
Q psy10467 76 MEEG 79 (304)
Q Consensus 76 ~s~~ 79 (304)
.+..
T Consensus 90 ~a~~ 93 (99)
T 2div_A 90 YATY 93 (99)
T ss_dssp ETTC
T ss_pred ecCC
Confidence 7543
No 287
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=6.2e-12 Score=94.68 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=55.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+.++.+ ++|||||+|.++++|++||+. ++..|+|+.|.|..+..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 23 LSRDVTEVLILQLFSQIGPCK---------SCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEE---------EEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCccCCHHHHHHHHHhcCCEe---------EEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 356667776666666665555 5999888655 799999999999999999985 55889999999998765
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 93 ~~ 94 (103)
T 2cqi_A 93 PS 94 (103)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 288
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.5e-12 Score=94.96 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCccccccccc----ccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHc-CCcCCCceEEEE
Q psy10467 1 MRFSFYVIDIL----IHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRH-KSNMGDRYIELY 75 (304)
Q Consensus 1 ~~~~~te~dl~----~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~-~~~i~~r~I~V~ 75 (304)
+||++++++|+ .+|..+|.|. +|.|+.|+.+ +|||||+|.++++|++||+.+ +..++|+.|.|.
T Consensus 17 L~~~~~~~~l~~~l~~~F~~~G~v~---------~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 17 IDYRLSRKELQQLLQEAFARHGKVK---------SVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCEE---------EEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCHHHHHHHHHHhccccCcEE---------EEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 46777777777 5555555444 5999988876 899999999999999999864 488999999999
Q ss_pred ecCCC
Q psy10467 76 MEEGT 80 (304)
Q Consensus 76 ~s~~~ 80 (304)
.+.+.
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 86544
No 289
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.24 E-value=6.6e-12 Score=101.91 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=57.1
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..++.|. .|.|+.++ +|+++|||||+|.++++|++||+.++ ..|+++.|.|..+.
T Consensus 47 lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 47 LSFYTTEEQIYELFSKSGDIK---------KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 356666666666666555544 59999887 58999999999999999999999755 89999999999876
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
+..
T Consensus 118 ~~~ 120 (156)
T 1h2v_Z 118 GFK 120 (156)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 290
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.4e-12 Score=94.65 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=51.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
+|+++++++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+.++ ..++|+.|++.+
T Consensus 13 lp~~~t~~~l~~~f~~~G~i---------~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 13 LQPGTTDQDLVKLCQPYGKI---------VSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCTTCCHHHHHTTSTTTSCE---------EEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCe---------EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35566666665555555444 459998886 68999999999999999999998644 889998887654
No 291
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.23 E-value=2.4e-12 Score=94.48 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+|+++++++|..+|..+|.|. +|.|+.++ +|+++|||||+|.+.+ |++|+..++ ..++|+.|.|..+.
T Consensus 9 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 9 LVYSATSEQVKELFSQFGKVF---------NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp ECTTSSHHHHTTTHHHHTCCS---------EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 367888888888888877666 49999887 5899999999999999 999998755 88999999999866
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 79 ~~~ 81 (90)
T 2ki2_A 79 PKK 81 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 292
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.23 E-value=1.4e-12 Score=98.16 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+|+++|+++|..+|..+|.|. .|.|+.+++|+++|||||+|.+.++|++||. ++..|+|+.|.|..+...
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~---------~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 17 IDVRMDETEIRSFFARYGSVK---------EVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCeE---------EEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcC
Confidence 366677777766666665554 5999999999999999999999999999999 778999999998876543
No 293
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.23 E-value=4.8e-12 Score=102.78 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=57.3
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHc-CCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRH-KSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~-~~~i~~r~I~V~~s~ 78 (304)
+|+++|++||..+|..+|.|. .|.|+.|+ +|+++|||||+|.+.++|++||+.+ +..++|++|.|..+.
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~---------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVG---------DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEE---------EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 356666666666666665554 59998886 7999999999999999999999874 488999999999876
Q ss_pred CC
Q psy10467 79 GT 80 (304)
Q Consensus 79 ~~ 80 (304)
..
T Consensus 149 ~~ 150 (158)
T 2kn4_A 149 YG 150 (158)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 294
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=8.4e-12 Score=95.73 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=47.8
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcC--------CCceEEEEecC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNM--------GDRYIELYMEE 78 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i--------~~r~I~V~~s~ 78 (304)
.+|+++|+.++ +..|.|+.+++|+++|||||+|.+.++|++||+.++ ..+ .+++|.|..+.
T Consensus 40 ~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 40 QELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 44555555553 456999999999999999999999999999998644 777 56778887754
No 295
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.23 E-value=2.2e-12 Score=96.84 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=57.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
+|+++|+++|..+|..+|.|.. +.+....+|+++|||||+|.+.++|++||++++..++|+.|.|..+...
T Consensus 25 Lp~~~t~~~l~~~F~~~G~v~~---------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 25 LNPNKSVAELKVAISELFAKND---------LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT---------CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred CCCCCCHHHHHHHHHHhCCcce---------EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence 5788899999988888888774 2222234589999999999999999999995559999999999986544
No 296
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.1e-12 Score=96.93 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=53.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..+|.| ..|.|+.++. .++|||||+|.+.++|++|++. ++..++|+.|.|..+..+
T Consensus 38 p~~~te~~l~~~F~~~G~i---------~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 38 PFRFRDPDLRQMFGQFGKI---------LDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CTTCCHHHHHHHGGGTCCC---------SCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCcCCHHHHHHHHHhcCCE---------EEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 5556666655555555444 4599988864 4999999999999999999986 558899999999986543
No 297
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.22 E-value=3.6e-12 Score=99.63 Aligned_cols=70 Identities=20% Similarity=0.061 Sum_probs=54.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+. ++..|+|+.|.|..+..
T Consensus 31 p~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 31 HEEATEEDIHDKFAEYGEI---------KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp CTTCCHHHHHHHHHTTSCE---------EEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 4555555555555554444 469998886 799999999999999999999976 55899999999998654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 102 ~ 102 (126)
T 3ex7_B 102 R 102 (126)
T ss_dssp S
T ss_pred C
Confidence 4
No 298
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.22 E-value=3.8e-12 Score=97.47 Aligned_cols=67 Identities=15% Similarity=0.032 Sum_probs=53.4
Q ss_pred CCcccccccccccccchh-hHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCL-LCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~-~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
+||++||+||+.+|..+| .|. .|.|.. ++++|||||+|.++++|++||+.++ ..++||.|.|..+.
T Consensus 36 Lp~~~te~dL~~~F~~~G~~v~---------~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 36 LPEGCSWQDLKDLARENSLETT---------FSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCS---------EEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCCHHHHHHHHHHhCCeeE---------EEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 467788888877777776 555 366643 3589999999999999999998755 89999999999865
Q ss_pred C
Q psy10467 79 G 79 (304)
Q Consensus 79 ~ 79 (304)
.
T Consensus 104 ~ 104 (111)
T 2jvr_A 104 N 104 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 299
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=6.1e-11 Score=91.15 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCcc
Q psy10467 140 VDQCCMRLQGLPYEC----------KKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKI 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~----------t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~ 208 (304)
..+++|.+.||=... .++||++.|++||.|. .|.|..+ .++|+|||+|.+.++|.+|+ .+||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~-~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI-HIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS-EEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE-EEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457789999983322 2368999999999998 5877654 25899999999999999999 7899999
Q ss_pred CCeEEEEEEcCCccc
Q psy10467 209 GHRLVTLVMSGAQWF 223 (304)
Q Consensus 209 ~gr~i~V~~~~~~~~ 223 (304)
+||.|.|..+.....
T Consensus 81 ~GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 81 AGKMITAAYVPLPTY 95 (114)
T ss_dssp TTEECEEEEECHHHH
T ss_pred CCEEEEEEEEcHHHH
Confidence 999999999876544
No 300
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.22 E-value=3e-12 Score=98.93 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=49.1
Q ss_pred hhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEec
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYME 77 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s 77 (304)
..+|+++|+.++ +..|.|+.++ +|+++|||||+|.+.++|++||+.++ ..++|+.|.|..+
T Consensus 54 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 54 DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 344555666554 3569998886 68999999999999999999998755 8899999988763
No 301
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.21 E-value=2.5e-12 Score=101.42 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=55.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-C----cCCCceEEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-S----NMGDRYIEL 74 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~----~i~~r~I~V 74 (304)
+||++||++|+.+|..+|.|.. .+|+|++|+ +|+++|||||+|.+. +|++||..++ . .++||.|.|
T Consensus 31 L~~~~te~~L~~~F~~~G~v~~-------~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V 102 (131)
T 2m2b_A 31 LNPHSTMDSILGALAPYAVLSS-------SNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINV 102 (131)
T ss_dssp CCTTCCSHHHHHHHGGGCCCCT-------TTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCC
T ss_pred CCCCCCHHHHHHHHHHhCCcce-------eeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEE
Confidence 3566666666666655554421 238999998 799999999999999 9999998866 7 899999999
Q ss_pred EecCCC
Q psy10467 75 YMEEGT 80 (304)
Q Consensus 75 ~~s~~~ 80 (304)
..+.+.
T Consensus 103 ~~a~~~ 108 (131)
T 2m2b_A 103 EFAKGS 108 (131)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 886554
No 302
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=2.5e-11 Score=110.55 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=61.2
Q ss_pred CCCcEEEEcC--CCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCcc---CCe--
Q psy10467 140 VDQCCMRLQG--LPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKI---GHR-- 211 (304)
Q Consensus 140 ~~~~~v~v~n--Lp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~---~gr-- 211 (304)
....+|||+| |++.+|+++|+++|++||.|. .|.+.. .+|||||+|++.++|++|+ .+||..+ .|+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~-~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE-EEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 6678899999 689999999999999999997 465542 4799999999999999999 6799877 355
Q ss_pred EEEEEEcC
Q psy10467 212 LVTLVMSG 219 (304)
Q Consensus 212 ~i~V~~~~ 219 (304)
.|.|..+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 46665553
No 303
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.20 E-value=3.5e-12 Score=92.99 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=52.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCC-C-CceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA-G-RSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~-G-r~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
|+++|++||..+|..+|.| ..|.|+.+.. + +++|||||+|.++++|++|++. ++..++|+.|.|..+.
T Consensus 13 p~~~t~~~l~~~F~~~G~i---------~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 13 TRNVTKDHIMEIFSTYGKI---------KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CTTCCHHHHHHHHHTTSCE---------EEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCCHHHHHHHHHhCCCE---------EEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5556666655555555444 4588887774 3 4899999999999999999986 5599999999998864
Q ss_pred C
Q psy10467 79 G 79 (304)
Q Consensus 79 ~ 79 (304)
+
T Consensus 84 ~ 84 (88)
T 4a8x_A 84 A 84 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 304
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=1.5e-11 Score=93.51 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCC-----ceEEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGD-----RYIEL 74 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~-----r~I~V 74 (304)
+||++|++||..+|..+|.|. .|.|+.+ |||||+|.++++|++||+.++ ..|+| +.|.|
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~---------~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVC---------YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEE---------EEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCEe---------EEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 356666666666666665554 5888765 899999999999999999765 88888 99999
Q ss_pred EecCCCC
Q psy10467 75 YMEEGTS 81 (304)
Q Consensus 75 ~~s~~~~ 81 (304)
..+.+..
T Consensus 88 ~~a~~~~ 94 (108)
T 1x4c_A 88 KVDGPRS 94 (108)
T ss_dssp EESSCCS
T ss_pred EeCCCCC
Confidence 9976654
No 305
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.19 E-value=5.8e-12 Score=108.91 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=50.7
Q ss_pred hhHHhhcCCCC---cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV---PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~---~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.|+ +.+|.|+.|+ +|+++|||||+|.+.++|++||+.++ ..|+|+.|.|..+...
T Consensus 83 ~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 83 EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 34445555444 4569999986 79999999999999999999998655 9999999999986543
No 306
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.19 E-value=6.2e-12 Score=95.25 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=51.0
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCc-eEEEEecCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDR-YIELYMEEGT 80 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r-~I~V~~s~~~ 80 (304)
..+|+++|+.+| +..|.|+ ..+|+++|||||+|.+.++|++||..++ ..++|+ .|.|..+.+.
T Consensus 35 ~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 35 KNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 455666666664 3568877 5689999999999999999999999755 889999 9999986544
No 307
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.19 E-value=2.5e-12 Score=92.56 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=45.5
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCc-eEEE
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDR-YIEL 74 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r-~I~V 74 (304)
..+|+++|+.++ +..|.|+ ..+|+++|||||+|.++++|++||+.++ ..++|+ +|.|
T Consensus 21 ~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 21 KNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 455666666665 3568776 5689999999999999999999998755 889998 8765
No 308
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=3.3e-11 Score=90.44 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=49.6
Q ss_pred hhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+++ ..|.++.++ +|+++|||||+|.++++|++||+. ++..|+|+.|.|..+.+.
T Consensus 30 ~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 30 ETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp HHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 4455666655 368888876 789999999999999999999986 559999999999986554
No 309
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.18 E-value=1.2e-11 Score=104.14 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=51.7
Q ss_pred chhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecC
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~ 78 (304)
+..+|+++|+.+| +..|.|+.+.+|+++|||||+|.++++|++||+.++..++|+.|.|....
T Consensus 122 t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 122 TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 3344555555554 35699999999999999999999999999999988889999999998743
No 310
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.17 E-value=7.6e-12 Score=99.26 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=55.1
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|+.+|..+|.| ..|.|+.++ +|+++|||||+|.+.++|++||+. ++..|+|+.|.|..+..
T Consensus 56 p~~~te~~L~~~F~~~G~i---------~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 56 TYRTSPDTLRRVFEKYGRV---------GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CSSCHHHHHHHHHGGGSCC---------SEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5566666666555555544 469998876 689999999999999999999986 44889999999998654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 127 ~ 127 (135)
T 2lea_A 127 G 127 (135)
T ss_dssp C
T ss_pred C
Confidence 4
No 311
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.17 E-value=9e-12 Score=90.45 Aligned_cols=63 Identities=8% Similarity=-0.069 Sum_probs=50.1
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
++++||++|+.+|.++|.|. ++++.. ++|||||+|.++++|++|++.+| ..++||+|.|..+.
T Consensus 16 ~~~~te~~L~~lF~q~G~V~---------~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 16 TAQIDGPTLRTLCMQHGPLV---------SFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CTTCCCHHHHHHHHHHSCEE---------EEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccCCHHHHHHHHHhhCCEE---------EEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45666666666666655555 477753 79999999999999999998866 99999999998863
No 312
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1e-11 Score=94.49 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=57.1
Q ss_pred CCcccccccccccccchhh-HHhhcCCCCcceEEEe-eCC-CCCceeeEEEEeCCHHHHHHHHHHc---CCcCCCceEEE
Q psy10467 1 MRFSFYVIDILIHITYCLL-CSQFFKPIVPVNILLL-TDD-AGRSSGEADVEFSSVDDAQRALQRH---KSNMGDRYIEL 74 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~-I~~fF~~~~~~~i~i~-~d~-~Gr~~G~aFV~F~s~edA~~Al~~~---~~~i~~r~I~V 74 (304)
+|+++|+++|+.+|..+|. |. +|.|+ .+. +|+++|||||+|.++++|++||+.+ +..++|+.|.|
T Consensus 16 Lp~~~t~~~l~~~f~~~G~~v~---------~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 16 IPKMKKREEILEEIAKVTEGVL---------DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CCTTSCHHHHHHHHHHHSTTEE---------EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCcCCHHHHHHHHHHhcCCce---------EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4677777777777777665 54 48887 555 5799999999999999999999875 37899999999
Q ss_pred EecCCCC
Q psy10467 75 YMEEGTS 81 (304)
Q Consensus 75 ~~s~~~~ 81 (304)
..+.+..
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9876543
No 313
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=6.8e-12 Score=94.86 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC---CcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK---SNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~---~~i~~r~I~V~~s 77 (304)
+||++||+||+.+|..+|.|. +|.|+.+ +|||||+|+++++|++||+.++ ..|+||+|.|..+
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~---------~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVT---------NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEE---------EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 467777777776666666555 5888754 7999999999999999998542 6799999999887
Q ss_pred CCCCc
Q psy10467 78 EGTSS 82 (304)
Q Consensus 78 ~~~~~ 82 (304)
..+..
T Consensus 90 ~~~~~ 94 (105)
T 1sjq_A 90 NHKEL 94 (105)
T ss_dssp SSSSC
T ss_pred CCCCC
Confidence 65543
No 314
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.8e-11 Score=93.12 Aligned_cols=69 Identities=16% Similarity=0.014 Sum_probs=51.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..++.|. .|.|+. +++++|||||+|.+.++|++||+. ++..|+|+.|.|..+..
T Consensus 30 Lp~~~t~~~l~~~F~~~G~v~---------~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 30 LPPDIRTKDIEDVFYKYGAIR---------DIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 355666666665555555444 477754 466899999999999999999966 45899999999998654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 315
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=97.81 Aligned_cols=66 Identities=20% Similarity=0.094 Sum_probs=51.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEe
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYM 76 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~ 76 (304)
|+++|+++|..+|..+|.| ..|.|+.++ +|+++|||||+|.++++|++||+.++ ..|+|+.|.|..
T Consensus 72 p~~~~~~~l~~~f~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 72 AEEVDDKVLHAAFIPFGDI---------TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CTTCCHHHHHHHHGGGSCE---------EEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCE---------EEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4555555555555544443 468888885 68999999999999999999998755 889999999875
No 316
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.16 E-value=1.8e-11 Score=101.65 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=55.2
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
|++++++||..+|..+|.| ..|.|+.+++|+++|||||+|.+.++|++||+.++ ..|+|+.|.|..+...
T Consensus 97 p~~~te~~L~~~F~~~G~I---------~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 97 DFGVSDADIQELFAEFGTL---------KKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CSCCCHHHHHHHHHHTSCC---------SEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 4555555555555554443 56999998899999999999999999999999755 8999999999886554
No 317
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.9e-11 Score=94.63 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=50.3
Q ss_pred CcccccccccccccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC---CcCCCceEEEEec
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK---SNMGDRYIELYME 77 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~---~~i~~r~I~V~~s 77 (304)
||++||+||+ ++|++|| +.+|.|+.+ +|||||+|+++++|++||+.++ ..|+|++|.|..+
T Consensus 40 p~~vte~dL~----------~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 40 PIDVTEGEVI----------SLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CTTCCHHHHH----------HHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCHHHHH----------HHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 5555555555 5555553 356888753 7999999999999999998754 5799999999997
Q ss_pred CCCCcc
Q psy10467 78 EGTSSK 83 (304)
Q Consensus 78 ~~~~~~ 83 (304)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 766543
No 318
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.15 E-value=2e-11 Score=100.05 Aligned_cols=71 Identities=20% Similarity=0.047 Sum_probs=55.6
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|..+|..+|.|. .|.|+.++ +|+++|||||+|.+.++|++||+. ++..|+|+.|.|..+.
T Consensus 80 Lp~~~t~~~L~~~F~~~G~i~---------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 80 IHEEAQEDEIQEKFCDYGEIK---------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCCCCHHHHHHHhhcCCCEE---------EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 355666666665555555444 59999885 799999999999999999999986 4588999999998865
Q ss_pred CC
Q psy10467 79 GT 80 (304)
Q Consensus 79 ~~ 80 (304)
..
T Consensus 151 ~~ 152 (165)
T 1rk8_A 151 VK 152 (165)
T ss_dssp EC
T ss_pred CC
Confidence 44
No 319
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.15 E-value=1.6e-11 Score=91.14 Aligned_cols=66 Identities=24% Similarity=0.377 Sum_probs=50.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..++.|. ++ ..+|+++|||||+|.++++|++||..++ ..++|+.|.|..+.+.
T Consensus 25 ~~~~t~~~l~~~F~~~g~v~------------~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 25 SFNITEDELKEVFEDALEIR------------LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp CSSCCHHHHHHHHCSEEEEC------------CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCHHHHHHHHhhCCcEE------------Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 55666666665555544333 22 5578999999999999999999999755 8899999999986544
No 320
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=4.7e-12 Score=97.55 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
+|+++++++|..+|..+|.|..--.. +...|.|+.++ +|+++|||||+|.+.++|++||+. ++..++|+.|.|..+.
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~~~~~-~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 15 LGENVTIESVADYFKQIGIIKTNKKT-GQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 47788888888888877766530000 00117787775 689999999999999999999986 4489999999998865
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 94 ~~~ 96 (116)
T 2lcw_A 94 RRA 96 (116)
Confidence 543
No 321
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=7.1e-11 Score=90.58 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=56.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|.. ....+.+. +|+++|||||+|.+.++|++||+.++ ..|+|+.|.|..+..
T Consensus 33 Lp~~~t~~~l~~~f~~~G~v~~-----~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 33 LSPRVTERDLVSLFARFQEKKG-----PPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp CCTTCCHHHHHHHTHHHHHSSS-----SCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred CCCCCCHHHHHHHHHHhCCccc-----eEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 4778888888888888777653 01234443 78999999999999999999998755 889999999998765
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 105 ~~ 106 (115)
T 2cpx_A 105 KK 106 (115)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 322
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=5.8e-11 Score=89.33 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=49.6
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHc---CCcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRH---KSNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~---~~~i~~r~I~V~~s~ 78 (304)
||++|++||+.+|..+|.| .+|.|+.+ +|||||+|+++++|++||+.+ +..+.|++|.|..+.
T Consensus 24 p~~~te~~L~~~F~~fG~v---------~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 24 PGEVTETEVIALGLPFGKV---------TNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CTTCCHHHHHHTTTTTSCE---------EEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCCHHHHHHHHHhcCCE---------EEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 5666666665555554444 45877643 799999999999999999864 367999999999976
Q ss_pred CCCc
Q psy10467 79 GTSS 82 (304)
Q Consensus 79 ~~~~ 82 (304)
....
T Consensus 90 ~~~~ 93 (101)
T 2cq1_A 90 HKEL 93 (101)
T ss_dssp CSSC
T ss_pred cccC
Confidence 5543
No 323
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.11 E-value=2e-11 Score=94.65 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=48.7
Q ss_pred ccccchhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCC----HHH----HHHHHH--H-cCCcCCCceEEEEe
Q psy10467 12 IHITYCLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSS----VDD----AQRALQ--R-HKSNMGDRYIELYM 76 (304)
Q Consensus 12 ~~~~~~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s----~ed----A~~Al~--~-~~~~i~~r~I~V~~ 76 (304)
+|-++..+|++||+.|| +..+.++.|+ +|+++|||||+|.+ +++ |.+|+. . ++..|+||.|.|..
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~l 92 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVIL 92 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEE
Confidence 44455555556666664 3679999999 68999999999996 444 788888 4 44999999999987
No 324
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.11 E-value=5.5e-11 Score=91.51 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=47.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCce-----EEE
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRY-----IEL 74 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~-----I~V 74 (304)
+||++||+||+.+|..+|.|. .|.|+.+ |||||+|+++++|++||+.++ ..|+|+. |.|
T Consensus 24 Lp~~~t~~~l~~~F~~~G~v~---------~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 24 LPPSGSWQDLKDHMREAGDVC---------YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp CCSSCCTTHHHHHHGGGSCEE---------EEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 356666666666666655554 5888755 999999999999999998655 8899987 777
Q ss_pred EecCC
Q psy10467 75 YMEEG 79 (304)
Q Consensus 75 ~~s~~ 79 (304)
..+..
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 76444
No 325
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.7e-11 Score=88.89 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=48.7
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..+|.| .+.++. ++++|||||+|.+.++|++||+. ++..++|+.|.|..+.+.
T Consensus 28 ~~~~t~~~l~~~F~~~G~v----------~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 28 PRDARVSDLKRALRELGSV----------PLRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CTTCCHHHHHHHHHHTTCC----------CSEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcCcHHHHHHHHHhcCCE----------EEEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5555655555555554433 255554 47899999999999999999977 458999999999886543
No 326
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.08 E-value=6.9e-11 Score=88.44 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=50.2
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-C--cCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-S--NMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~--~i~~r~I~V~~s 77 (304)
+|+++|++||...|..+|.|. +|.|+. .+|||||+|++.++|++|++.++ . .++||+|.|..+
T Consensus 29 Lp~~~te~~L~~lF~~fG~V~---------~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 29 LIDGVVEADLVEALQEFGPIS---------YVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE---------EEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCCCHHHHHHHHhccCCEE---------EEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 366777777666665555544 588763 57999999999999999998765 3 489999999987
Q ss_pred CCC
Q psy10467 78 EGT 80 (304)
Q Consensus 78 ~~~ 80 (304)
..+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 554
No 327
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=6.4e-11 Score=92.84 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=53.1
Q ss_pred CcccccccccccccchhhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
||++++++|+. .|.++|+.||. .+|.+ ..+|+++|||||+|.+.++|++||..++ ..+.|++|.|..+..
T Consensus 38 ~~~~~e~~L~~------~L~~~F~~~G~I~~v~i--~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 38 NPEVPKEKLQA------LLYALASSQGDILDIVV--DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp CTTSCHHHHHH------HHHHHHHHHSCEEEEEE--CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred CCCCCHHHHHH------HHHHHhccCCCeEEEEe--ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 55666665542 24456666643 45655 3578999999999999999999998755 899999999998665
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 110 ~~ 111 (127)
T 2a3j_A 110 PQ 111 (127)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 328
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=8.8e-11 Score=88.79 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=48.0
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC---CcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK---SNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~---~~i~~r~I~V~~s~ 78 (304)
||++|++||+.+|..+|.| .+|.|+. .+|||||+|+++++|++||+.++ ..|+|++|.|..+.
T Consensus 24 p~~~te~~L~~~F~~fG~V---------~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 24 CESVVEADLVEALEKFGTI---------CYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CSSCCHHHHHHHHTTTSCE---------EEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCCHHHHHHHHHhCCCE---------EEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5555555555444444443 4587764 37999999999999999998643 45999999999876
Q ss_pred CCC
Q psy10467 79 GTS 81 (304)
Q Consensus 79 ~~~ 81 (304)
...
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 554
No 329
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=7.2e-11 Score=90.32 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=43.6
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC---CcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK---SNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~---~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|++|+ +.+|.|+ +++|||||+|+++++|++||+.++ ..|.||.|.|..+...
T Consensus 41 ~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 41 SAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred HHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 33445555553 3568886 468999999999999999998643 5699999999986544
No 330
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=7.4e-11 Score=87.75 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=47.4
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCC--CceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMG--DRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~--~r~I~V~~s~ 78 (304)
|+++|+++|..+|..+|.| .+|.|+.+ +|||||+|.++++|++||+. ++..++ ++.|.|..+.
T Consensus 26 p~~~t~~~l~~~F~~~G~v---------~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 26 GPNTSLAALAREFDRFGSI---------RTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CSSCCHHHHHHHHHTTSCE---------EEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCHHHHHHHHHhcCCe---------eEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 4555555555555444443 45777642 78999999999999999986 558888 8999999865
Q ss_pred CC
Q psy10467 79 GT 80 (304)
Q Consensus 79 ~~ 80 (304)
+.
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 331
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=85.65 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=48.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.| ..|.|+ +|||||+|.++++|++||+.++ ..++|+.|.|..+..
T Consensus 16 lp~~~t~~~l~~~F~~~G~i---------~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQYGKV---------LECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CCSSCCHHHHHHHHHTSSCE---------EEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCCCHHHHHHHHHhCCCE---------EEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 35566666655555555444 457775 6899999999999999997654 889999999998655
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 80 ~~ 81 (90)
T 2dnq_A 80 KS 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 332
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=7.6e-11 Score=88.77 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCc-ccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC---CcCCCceEEEEe
Q psy10467 1 MRF-SFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK---SNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~-~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~---~~i~~r~I~V~~ 76 (304)
+|| ++|++||+.+|..+|.|. +|.|+.+ +|||||+|+++++|++||+.++ ..|.||+|.|..
T Consensus 23 Lp~~~~te~dL~~lF~~fG~V~---------~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 23 FQRGKNLRYQLLQLVEPFGVIS---------NHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCSSSHHHHHHTTTGGGSCEE---------EEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCcCCHHHHHHHHHhcCCEE---------EEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 356 667777666666655555 5888753 5899999999999999998754 458999999988
Q ss_pred cCC
Q psy10467 77 EEG 79 (304)
Q Consensus 77 s~~ 79 (304)
+..
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 333
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=7.1e-11 Score=88.19 Aligned_cols=58 Identities=7% Similarity=0.044 Sum_probs=44.4
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHc-CCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRH-KSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~-~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ +..|.|+. ++|||||+|.+.++|++||+.+ +..++|+.|.|..+...
T Consensus 30 ~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 30 EEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred HHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34455555553 35688863 4799999999999999999764 48899999999986554
No 334
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.05 E-value=2e-10 Score=108.29 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=52.9
Q ss_pred hhhHHhhcCCCC-cceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCCc
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTSS 82 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~~ 82 (304)
..+|.+||+.|+ +..|.|+.++ +|+++|||||+|.++++|++||+.++ ..|+|+.|.|..+.....
T Consensus 116 e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 116 ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 345555555554 3569999886 79999999999999999999997755 999999999998776543
No 335
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.05 E-value=1.7e-10 Score=86.74 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=51.7
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+ +|||||+|.++++|++||+. ++..|+|+.|.|..+..
T Consensus 19 l~~~~t~~~l~~~F~~~G~i~---------~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 19 LANTVTEEILEKAFSQFGKLE---------RVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEE---------EEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCEE---------EEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 466777777777776666555 47775 56999999999999999986 55889999999999766
Q ss_pred CCc
Q psy10467 80 TSS 82 (304)
Q Consensus 80 ~~~ 82 (304)
...
T Consensus 83 ~~~ 85 (103)
T 2dgu_A 83 PDQ 85 (103)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 336
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.04 E-value=2.6e-11 Score=90.10 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=52.2
Q ss_pred CCccccccccc----ccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEE
Q psy10467 1 MRFSFYVIDIL----IHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELY 75 (304)
Q Consensus 1 ~~~~~te~dl~----~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~ 75 (304)
+|+++++++|. .+|..+|.|. .|.|+ .+|+++|||||+|.+.++|++|++. ++..++|+.|.|.
T Consensus 16 Lp~~~~~~~l~~~l~~~f~~~G~i~---------~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 16 LNEKIKKDELKKSLHAIFSRFGQIL---------DILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCTTSCHHHHHHHHHHHHGGGSCEE---------EEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEE---------EEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35666666666 5555544443 47665 3578899999999999999999986 5588999999999
Q ss_pred ecCCC
Q psy10467 76 MEEGT 80 (304)
Q Consensus 76 ~s~~~ 80 (304)
.+...
T Consensus 85 ~a~~~ 89 (97)
T 1nu4_A 85 YAKTD 89 (97)
T ss_dssp ECSSC
T ss_pred EccCC
Confidence 86654
No 337
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=8.8e-11 Score=86.86 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCC-CCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDD-AGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~-~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
+||++|+++|..+|..+|.|. +| +.++ +|+ ||||+|.++++|++||++++..++|+.|.|..+..
T Consensus 16 l~~~~t~~~l~~~F~~~G~v~---------~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 16 FPRGVDSAQLSEYFLAFGPVA---------SV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCTTCCHHHHHHHGGGTSCEE---------EE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 366667766666666665554 35 3444 555 99999999999999999555999999999987654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 338
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=6.9e-10 Score=80.62 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCC----CCCH----HHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCe
Q psy10467 140 VDQCCMRLQGLPY----ECKK----EDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211 (304)
Q Consensus 140 ~~~~~v~v~nLp~----~~t~----~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr 211 (304)
++..+|+|.-++. +.-. .+|.+.|.+||.|. .++++.+. +||+|.+.++|.+|+++||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI-LIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE-EEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE-EEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 5567888887762 2222 67999999999887 58887653 8999999999999999999999999
Q ss_pred EEEEEEcCCcccc
Q psy10467 212 LVTLVMSGAQWFL 224 (304)
Q Consensus 212 ~i~V~~~~~~~~~ 224 (304)
.|+|..+++.+..
T Consensus 77 ~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 77 TITIALKSPSGPS 89 (91)
T ss_dssp EEEEEECCCSSCS
T ss_pred EEEEEeCCCCccc
Confidence 9999999988754
No 339
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.2e-10 Score=88.55 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=52.4
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+.+ +|||||+|.+.++|++||.. ++..++|+.|.|..+..
T Consensus 33 l~~~~t~~~l~~~F~~~G~i~---------~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 33 IASGLTDQLMRQTFSPFGQIM---------EIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCCHHHHHHHHHHHSCEE---------EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeE---------EEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 466677777776666666555 5888754 79999999999999999966 55899999999998665
Q ss_pred CC
Q psy10467 80 TS 81 (304)
Q Consensus 80 ~~ 81 (304)
..
T Consensus 99 ~~ 100 (109)
T 1x4g_A 99 SP 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 340
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.02 E-value=1.2e-10 Score=84.98 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=44.4
Q ss_pred hhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 18 LLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 18 ~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
.+|+++|+.+.+..|.|. +++|||||+|.++++|++|++.++ ..++|+.|.|..+..
T Consensus 20 ~~l~~~F~~~~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 20 QEVHDLLKDYDLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp HHHHHHTCSSCCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHhhCCeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 444555555544567773 689999999999999999998654 889999999988644
No 341
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=6.6e-11 Score=88.65 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=46.9
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
|+++|+++|+.+|..+|.| .+|.|+ +++|||||+|.+.++|++||.. ++..++|+.|.|..+.
T Consensus 36 p~~~~~~~l~~~f~~~G~i---------~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 36 PHFATEADLIPLFQNFGFI---------LDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CTTCCHHHHHHHHHTTSCC---------SEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CcccCHHHHHHHHHhCCCE---------EEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4555555555555444443 468886 5789999999999999999976 5589999999887753
No 342
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.02 E-value=1.3e-10 Score=93.51 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+.+ ++|||||+|.+.++|++||.. ++..++|+.|.|..+.+
T Consensus 81 l~~~~t~~~l~~~F~~~G~i~---------~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 81 LGNNGNKTELERAFGYYGPLR---------SVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp CCSCCSCHHHHHHHHHHSCEE---------EEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCCHHHHHHHHHhhCCEE---------EEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 466777777776666666555 5888765 689999999999999999985 55889999999988654
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.02 E-value=2e-10 Score=86.98 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=54.7
Q ss_pred chhhHHhhcCCCC-cceEEEeeCCC--CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDDA--GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~~--Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
...+|++.|+.|| +.+|.|+.+++ |+++|||||+|.++++|++|++.++ ..++||.|.|..+..
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 4678999999986 57899988763 6899999999999999999997655 999999999988643
No 344
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.02 E-value=1.2e-10 Score=88.55 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=43.4
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.+| +..|.|+ +|||||+|.+.++|++|++. ++..++|+.|.|..+...
T Consensus 46 ~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 46 SELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp HHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred HHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34445555553 3568876 79999999999999999986 558899999999886544
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=93.16 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=54.2
Q ss_pred CcccccccccccccchhhHHhhcCCC-CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPI-VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~-~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
||++|+++|..+|..+|.|.... + .+.+|.+ ..+|+++|||||+|.+.++|++||.. ++..++|+.|.|..+..
T Consensus 54 p~~~te~~L~~~F~~~G~i~~~~--~~~~~di~~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 54 AKHVQEKDLKYIFGRYVDFSSET--QRIMFDIRL--MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp CTTCCHHHHHHHHGGGCCTTCHH--HHHHCEEEE--EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred CCCCCHHHHHHHHHHhCCccccc--ccceeeEEe--ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 66777777777777766554310 0 0112333 35789999999999999999999986 55899999999998654
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 130 ~ 130 (143)
T 3egn_A 130 A 130 (143)
T ss_dssp S
T ss_pred C
Confidence 3
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.01 E-value=8.6e-11 Score=86.22 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=43.9
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
||++||++|..+|+.+|.| .+|.|+.+ ++|||||+|.++++|+++. .....++|+.|.|..+.++
T Consensus 20 p~~~te~~L~~~F~~~G~i---------~~v~i~~~----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 20 TEDMTAEELQQFFCQYGEV---------VDVFIPKP----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CTTCCHHHHHHHHTTTSCE---------EEEECCSS----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC--
T ss_pred CCCCCHHHHHHHHhccCCE---------EEEEEeeC----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcCCC
Confidence 5555665555555555444 45888764 8899999999999999432 2224467899999986544
No 347
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=8.3e-10 Score=85.21 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecC-HHHHHHHH-Hh--CCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYE-CKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVD-KENAEKAL-LR--HKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~-~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~-~~~a~~A~-~~--~~~~~~gr~i~ 214 (304)
..+..|+|+||++. +++++|+++|++||.|. .|.++.+.+ .|||.|.+ +++|..|+ .+ ++..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~-~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIK-WIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE-EEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE-EEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 67899999999999 99999999999999998 577776543 59999999 89999999 55 56889999999
Q ss_pred EEEcCCc
Q psy10467 215 LVMSGAQ 221 (304)
Q Consensus 215 V~~~~~~ 221 (304)
+......
T Consensus 90 ~evL~Ge 96 (121)
T 1owx_A 90 WEVLEGE 96 (121)
T ss_dssp EEECCHH
T ss_pred EEECCCH
Confidence 8877554
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=89.25 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=44.3
Q ss_pred chhhHHhhcCCCCcceEEEeeCCC----CCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 16 YCLLCSQFFKPIVPVNILLLTDDA----GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 16 ~~~~I~~fF~~~~~~~i~i~~d~~----Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
+..+|+++|+.++...+.++.+.. |+++|||||+|.++++|++||+.++ .++|+.|.+..
T Consensus 21 te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~~ 84 (114)
T 2dnl_A 21 DEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCVS 84 (114)
T ss_dssp CHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEEC
T ss_pred CHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEecc
Confidence 344556666666543477776653 7999999999999999999998874 36777666654
No 349
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.5e-10 Score=84.90 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=50.2
Q ss_pred ccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCCC
Q psy10467 14 ITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGTS 81 (304)
Q Consensus 14 ~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~~ 81 (304)
-.+..+|+++|+.++ +..|.|. +++|||||+|.+.++|++||..++ ..++|+.|.|..+....
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 455667777777775 4567773 688999999999999999997755 88999999999876543
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.99 E-value=1.1e-10 Score=84.79 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=51.1
Q ss_pred CCcccccccccccccchhhHHhhcC-CC-CcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFK-PI-VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~-~~-~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
+|+++|+++|..+|..++.+.-+.. +. .+.+|.+.. .+|||||+|.++++|++||.+++..++|+.|.|.+
T Consensus 14 Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 14 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 4788888888888888742211100 00 234577653 47999999999999999994455899999998865
No 351
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-10 Score=83.80 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=46.4
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHc-C-CcCCCceEEEEec
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRH-K-SNMGDRYIELYME 77 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~-~-~~i~~r~I~V~~s 77 (304)
|+++|+++|..+|..+|.| ..|.++. ++|||||+|.+.++|++|++.+ + ..++|+.|.|..+
T Consensus 21 ~~~~t~~~l~~~f~~~G~i---------~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 21 GDTITETDLRNHFYQFGEI---------RTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTSCHHHHHHHHHTTSCE---------EEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCHHHHHHHHHhCCCE---------eEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4555555555555554444 4588874 5799999999999999999864 4 8899999988763
No 352
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.99 E-value=2.6e-10 Score=84.97 Aligned_cols=62 Identities=8% Similarity=0.035 Sum_probs=47.0
Q ss_pred Cc-ccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RF-SFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~-~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+ ++++++|..+|..+|.|. .|.| ++|||||+|.+.++|++||.. ++..++|+.|.|..+..
T Consensus 31 p~~~~t~~~L~~~F~~~G~v~---------~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 31 PLKNVSKEDLFRIFSPYGHIM---------QINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CSSCCCHHHHHHHHGGGSCEE---------EEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CcccCCHHHHHHHHHhcCCEE---------EEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 55 566666665555555444 4777 379999999999999999986 45889999999988543
No 353
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1e-09 Score=82.27 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=52.9
Q ss_pred cccccccccccccchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 3 FSFYVIDILIHITYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 3 ~~~te~dl~~~~~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
|.+..+|...--.+..+|+++|++|+ +.+|.|+ ++++|||||+|+++++|++||+.. ..+.+++|.|..+...
T Consensus 17 w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 17 WKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQ 90 (100)
T ss_dssp CCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCC
T ss_pred eeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCC
Confidence 44433333333445677777777775 4678887 579999999999999999999874 3457889999886544
No 354
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=4.8e-10 Score=82.44 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=47.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
|+++|+++|..+|..+|.| ..|.|+ ++||||+|.++++|++||+. ++..++|+.|.|..+...
T Consensus 19 p~~~t~~~l~~~F~~~G~v---------~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 19 SPTCTNQELRAKFEEYGPV---------IECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CSSCCHHHHHHHHHTTSCC---------CEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCHHHHHHHHHhcCCe---------EEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 5556666655555554444 458875 34999999999999999976 558899999999997554
No 355
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.7e-10 Score=83.88 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=49.5
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cC-CcCCCceEEEEecC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HK-SNMGDRYIELYMEE 78 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~-~~i~~r~I~V~~s~ 78 (304)
+|+++|+++|+.+|..+|.|. ..+.+ .++|||||+|.++++|++||+. ++ ..++|+.|.|..+.
T Consensus 16 Lp~~~t~~~l~~~F~~~G~vv--------~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGDRKLPL--------AGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCTTCCHHHHHHHHHHTTCCC--------SSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHHHcCCce--------EEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 466777777776666665521 23444 2689999999999999999975 55 78999999999876
Q ss_pred CC
Q psy10467 79 GT 80 (304)
Q Consensus 79 ~~ 80 (304)
+.
T Consensus 82 ~~ 83 (93)
T 2cqh_A 82 SK 83 (93)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 356
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=2.9e-10 Score=86.91 Aligned_cols=64 Identities=17% Similarity=0.037 Sum_probs=47.8
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.|. .|.|+ +++|||||+|.+.++|++||..++ ..++|+.|.|..+..
T Consensus 19 p~~~te~~L~~~F~~~G~i~---------~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 19 PAGTLAAEIQETFSRFGSLG---------RVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp CTTCCHHHHHHHHHTTSCEE---------EEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCHHHHHHHHHhcCCEE---------EEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 55566666555555554443 47765 377899999999999999998655 889999999988654
No 357
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=3.6e-10 Score=84.29 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=47.7
Q ss_pred CCcccccccccccccch--hhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYC--LLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~--~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s 77 (304)
+|+++|+++|..+|..+ +.|. .|.+ .+|||||+|.+.++|++||.. ++..|+|+.|.|..+
T Consensus 23 Lp~~~t~~~l~~~F~~~g~g~v~---------~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 23 LMLSTSEEMIEKEFNNIKPGAVE---------RVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSTTCEE---------EEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCcceE---------EEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35666666666666555 3333 3554 468999999999999999985 558899999999986
Q ss_pred CCC
Q psy10467 78 EGT 80 (304)
Q Consensus 78 ~~~ 80 (304)
.+.
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 358
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.5e-10 Score=84.71 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=42.5
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ +..|.| ++|||||+|.+.++|++||+. ++..+.|+.|.|..+...
T Consensus 26 ~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 26 EDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHHHHHHTTTCCCCEEEE-------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred HHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 44555555554 345777 378999999999999999986 558899999888876443
No 359
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=4.2e-10 Score=82.42 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=50.9
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+|+++|+++|..+|..+|.|. .|.|+ +|||||+|.++++|++||+. ++..++|+.|.|..+.+
T Consensus 17 lp~~~t~~~l~~~F~~~G~v~---------~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 17 VSAACTSQELRSLFERRGRVI---------ECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCTTCCHHHHHHHHHHHSCEE---------EEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCCHHHHHHHHHcCCCEE---------EEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 467777777777777766655 48775 34999999999999999986 55889999999998655
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 81 ~ 81 (90)
T 2dnp_A 81 G 81 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 360
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.95 E-value=6.6e-10 Score=90.39 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred CCcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCC--ceEEEEec
Q psy10467 1 MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGD--RYIELYME 77 (304)
Q Consensus 1 ~~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~--r~I~V~~s 77 (304)
++|++|+++|..+|..+|.|. .|.|..+ +++|||||+|.+.++|++|++.++ ..|.+ +.|.|..+
T Consensus 54 L~~~vted~L~~~Fs~fG~V~---------~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 54 LFYPVTLDVLHQIFSKFGTVL---------KIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCSCCCHHHHHHHHHHHSCEE---------EEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred cCCCCCHHHHHHHHHhcCCEE---------EEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 456677776666666666555 4877643 367999999999999999998766 77744 89999987
Q ss_pred CCCC
Q psy10467 78 EGTS 81 (304)
Q Consensus 78 ~~~~ 81 (304)
....
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 6654
No 361
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.94 E-value=2.3e-10 Score=87.15 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=43.4
Q ss_pred chhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
+..+|+++|+.++ +..|.| ++|||||+|.++++|++||+. ++..++|+.|.|..+..
T Consensus 41 t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3444555555553 345777 679999999999999999966 55899999999998653
No 362
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.92 E-value=5.9e-10 Score=86.57 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=50.3
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCCCC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTS 81 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~~~ 81 (304)
.+..+|+++|+.++ +.+|.|. +++|||||+|.+.++|++||+. ++..++|+.|.|..+....
T Consensus 49 ~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 49 MTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 55677777777775 4678874 6889999999999999999976 5588999999999866543
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.91 E-value=2.6e-10 Score=86.31 Aligned_cols=64 Identities=20% Similarity=0.136 Sum_probs=53.8
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCCCC---CceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDDAG---RSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~~G---r~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
.-..+|++.|++|| +.+|.|+.+..+ +++|+|||+|.++++|++|++.++ ..++||.|.|..+.
T Consensus 27 ~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 27 EIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 34578889999986 578999887754 689999999999999999997755 99999999998744
No 364
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.3e-10 Score=83.44 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=41.3
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
.+|+++|+.++ +.+|.|+.+ ++|||||+|.++++|++|+.. ...+.++.|.|..+.+.
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 20 DELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp HHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred HHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 34445555553 346888754 789999999999999876433 35568899999886554
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=6.8e-10 Score=84.90 Aligned_cols=61 Identities=23% Similarity=0.189 Sum_probs=49.8
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEGT 80 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~~ 80 (304)
..+|+++|+.+| +..|.| .+. .++|||||+|.++++|++||..++ ..++||.|.|..+.+.
T Consensus 40 e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 467888888886 467755 454 389999999999999999997766 8899999999986554
No 366
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.4e-10 Score=86.75 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=45.1
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcC-----CCceEEEE
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNM-----GDRYIELY 75 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i-----~~r~I~V~ 75 (304)
+|++|+++|+.+|..+|.|. +|.|+. .+|||||+|.++++|++|++.++ ..+ .+++|.|.
T Consensus 36 ~~~~te~~L~~~F~~fG~v~---------~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 36 GNGVSRNQLLPVLEKCGLVD---------ALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp GGTCCHHHHHHHHHHHSCEE---------EEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCHHHHHHHHHhcCCeE---------EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 45555555555555555444 466642 37999999999999999998765 666 57778777
Q ss_pred ecCCC
Q psy10467 76 MEEGT 80 (304)
Q Consensus 76 ~s~~~ 80 (304)
.+...
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 75443
No 367
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=7.5e-10 Score=81.96 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=50.3
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceE-EEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecCC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNI-LLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEG 79 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i-~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~~ 79 (304)
|+++|+++|..+|..+|.|. .| .|+.++. .|.|||+|.+.++|++||.. ++..++|+.|.|..+.+
T Consensus 24 p~~~t~~~l~~~F~~~G~v~---------~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 24 PPHLQWEVLDSLLVQYGVVE---------SCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSSSCHHHHHHHHHHHSCEE---------EEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCHHHHHHHHHhcCCeE---------EEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 56666666666666665554 47 4666653 34499999999999999985 55999999999998765
Q ss_pred C
Q psy10467 80 T 80 (304)
Q Consensus 80 ~ 80 (304)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 368
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=2.8e-09 Score=82.93 Aligned_cols=61 Identities=21% Similarity=0.181 Sum_probs=44.0
Q ss_pred chhhHHhhcCCCC-cceEEEeeCCCCCceee-EEEEeCCHHHHHHHHHHcC-CcCCC--ceEEEEecCCCC
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDDAGRSSGE-ADVEFSSVDDAQRALQRHK-SNMGD--RYIELYMEEGTS 81 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~-aFV~F~s~edA~~Al~~~~-~~i~~--r~I~V~~s~~~~ 81 (304)
+..+|+++|+.|| +.+|.|... .|| |||+|.+.++|+.|++.++ ..|.| +.|.|..+....
T Consensus 38 t~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 38 TVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3345556666664 355887642 286 9999999999999998755 77766 589998876554
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.80 E-value=6e-09 Score=80.46 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=53.1
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCC-----CCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDA-----GRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~-----Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
..+|++.|+.|| +.+|.|+.+.. ++++|+|||+|.++++|++|++.++ ..++||.|.|..+.
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 478999999996 57899887653 5788999999999999999998755 99999999998754
No 370
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=4.2e-09 Score=77.16 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=47.1
Q ss_pred CcccccccccccccchhhHHhhcCCCC--cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIV--PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~--~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
||++++++|. ..|+++|++++ +.+| +| |+|||+|.+.++|++|++.++ ..+.||+|.|..+.
T Consensus 18 ~~~~~~~~lk------~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 18 PANKDGKSVS------NRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CTTSCHHHHH------HHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CCcCCHHHHH------HHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 5556655543 23556666663 3445 24 999999999999999998755 99999999998865
Q ss_pred CC
Q psy10467 79 GT 80 (304)
Q Consensus 79 ~~ 80 (304)
..
T Consensus 83 ~~ 84 (96)
T 2diu_A 83 KN 84 (96)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 371
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.78 E-value=3.7e-09 Score=82.77 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=45.7
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCCCCCceee-EEEEeCCHHHHHHHHHHcC-CcCCC--ceEEEEecCCCC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDDAGRSSGE-ADVEFSSVDDAQRALQRHK-SNMGD--RYIELYMEEGTS 81 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~-aFV~F~s~edA~~Al~~~~-~~i~~--r~I~V~~s~~~~ 81 (304)
.+..+|+++|+.|| +..|.|..+ ++|| |||+|.+.++|++|++.++ ..|.+ +.|+|..+....
T Consensus 40 vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 40 VTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp CCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 33444556666664 356877653 3577 9999999999999998766 77766 789998876543
No 372
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=6.8e-09 Score=75.75 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCCCC-----CCH----HHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCC
Q psy10467 140 VDQCCMRLQGLPYE-----CKK----EDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGH 210 (304)
Q Consensus 140 ~~~~~v~v~nLp~~-----~t~----~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~g 210 (304)
++..+|+|.-++.+ .-. .+|.+.|.+||.|. .++++.|. +||+|.+.++|.+||++|+..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-lvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV-LVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS-EEEEETTE-------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE-EEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 66788999988743 111 56999999999887 58888763 999999999999999999999999
Q ss_pred eEEEEEEcC
Q psy10467 211 RLVTLVMSG 219 (304)
Q Consensus 211 r~i~V~~~~ 219 (304)
|.|+|.+.+
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 373
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.68 E-value=1.9e-08 Score=86.04 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=65.9
Q ss_pred CcEEEEcCC-----CCCCCHHHHHHHhhcCCCccceEEEeeC-----CCCCcccEEEEEecCHHHHHHHH-HhCCCccCC
Q psy10467 142 QCCMRLQGL-----PYECKKEDVEKFLEGLEIVPNGITIPHD-----YAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGH 210 (304)
Q Consensus 142 ~~~v~v~nL-----p~~~t~~dl~~~F~~~g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~g 210 (304)
...+.+.|+ ...-.+++|.+.|++||.|. .|.+..+ .+|+++|++||+|.+.++|.+|+ .+||..++|
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~-~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEE-EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeE-EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 345666655 23345689999999999998 5888754 35589999999999999999999 789999999
Q ss_pred eEEEEEEcCCccc
Q psy10467 211 RLVTLVMSGAQWF 223 (304)
Q Consensus 211 r~i~V~~~~~~~~ 223 (304)
|.|.|........
T Consensus 203 r~i~~~~~~~~~f 215 (222)
T 3dxb_A 203 RKVVAEVYDQERF 215 (222)
T ss_dssp SBCEEEECCHHHH
T ss_pred eEEEEEEcCHHHh
Confidence 9999999876544
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.66 E-value=2.9e-08 Score=76.11 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=49.7
Q ss_pred hhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecCC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEEG 79 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~~ 79 (304)
..+|++.|+.|| +.+|.|..+. ++|+|||+|.+.++|++|++.++ ..++||.|.|..+..
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 567899999996 5778775442 58999999999999999997655 999999999988543
No 375
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.4e-07 Score=69.00 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC-----CCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGL-----EIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLV 213 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~-----g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i 213 (304)
...++|-+-|||.++++..|+.+.+++ |.+. .|.+..|..| |+|+|.+...|.+|. .+||.+|+||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~-KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR-KILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS-EEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee-EEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 446789999999999999999999999 8887 5777776555 999999999999988 899999999999
Q ss_pred EEEE
Q psy10467 214 TLVM 217 (304)
Q Consensus 214 ~V~~ 217 (304)
++--
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9843
No 376
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.55 E-value=2.6e-08 Score=86.15 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=47.7
Q ss_pred chhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcC------------CCceEEEEecCCC
Q psy10467 16 YCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNM------------GDRYIELYMEEGT 80 (304)
Q Consensus 16 ~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i------------~~r~I~V~~s~~~ 80 (304)
.+.+|+++|+.|| +.+|.|+. ++|||||+|.+.++|+.|++.++ ..| .|+.|.|..+...
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred cHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 4667777777775 46788873 68999999999999999997655 777 7999999987654
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=9.2e-07 Score=64.13 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=46.6
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCC
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~ 79 (304)
.+|.+.|++|| +..|+|+.|. +||+|.+.++|.+||++++..++||.|.|...++
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence 45888888887 5778887654 8999999999999999777999999999988543
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.23 E-value=1.9e-06 Score=73.39 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=51.6
Q ss_pred hhhHHhhcCCCC-cceEEEeeCC-----CCCceeeEEEEeCCHHHHHHHHHHcC-CcCCCceEEEEecC
Q psy10467 17 CLLCSQFFKPIV-PVNILLLTDD-----AGRSSGEADVEFSSVDDAQRALQRHK-SNMGDRYIELYMEE 78 (304)
Q Consensus 17 ~~~I~~fF~~~~-~~~i~i~~d~-----~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i~~r~I~V~~s~ 78 (304)
..+|.+.|+.|| +..|.|+.+. +|+++|++||+|.+.++|++|+..++ ..++||.|.+....
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 357889999996 5778887543 34899999999999999999998765 99999999998743
No 379
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.20 E-value=3.7e-07 Score=83.00 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=40.3
Q ss_pred cccccc-cccccchhhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC-CcC
Q psy10467 5 FYVIDI-LIHITYCLLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK-SNM 67 (304)
Q Consensus 5 ~te~dl-~~~~~~~~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~-~~i 67 (304)
+++..+ +++-.++.+|+++|+.||. .+|.|.. ++|||||+|.+.++|++|++.+| +.+
T Consensus 21 l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp EEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344444 4555666666677777753 4565532 57999999999999999998866 444
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=1.8e-06 Score=62.98 Aligned_cols=52 Identities=13% Similarity=0.031 Sum_probs=44.9
Q ss_pred hhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 18 LLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 18 ~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
.+|.+.|++|| +..|+|+.|+ +||+|.+.++|.+||++++..++||.|.|..
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCeEEEEec
Confidence 34777888886 6789998765 9999999999999999777999999999976
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=0.00055 Score=50.46 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=61.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-----CCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCCeEEE
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEG-----LEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVT 214 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~-----~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~i~ 214 (304)
....+|.|.|||..+.++.|.-+|+. -|.|. .|... . +-|+|+|.+.+.|++.|++..+.|++..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~-~v~~~--~-----~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL-SWQRL--G-----CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE-EEEEE--T-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceee-EEEEc--C-----CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 56788999999999999999999987 24665 34443 2 469999999999999998888999999999
Q ss_pred EEEcCCcc
Q psy10467 215 LVMSGAQW 222 (304)
Q Consensus 215 V~~~~~~~ 222 (304)
|.+.-+..
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 98865543
No 382
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=4.6e-05 Score=58.52 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=44.1
Q ss_pred cchhhHHhhcCCCC-cceEEEeeCCCCCceeeEEEEeCC-HHHHHHHHHHcC---CcCCCceEEEEecC
Q psy10467 15 TYCLLCSQFFKPIV-PVNILLLTDDAGRSSGEADVEFSS-VDDAQRALQRHK---SNMGDRYIELYMEE 78 (304)
Q Consensus 15 ~~~~~I~~fF~~~~-~~~i~i~~d~~Gr~~G~aFV~F~s-~edA~~Al~~~~---~~i~~r~I~V~~s~ 78 (304)
++..+|+++|+.++ +..|.++.+.. .|||.|.+ +++|..|+...+ ..|.+..+.+....
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 44567777777775 46687776543 59999999 899999998863 77888877776643
No 383
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.48 E-value=0.00064 Score=49.54 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~ 203 (304)
...+.++| +.|.+....||.++|+.||.|. |.++.| | -|||.|.+++.|..|+..
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~--I~WidD-T-----sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-T-----SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC--CEEEET-T-----EEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE--EEEEcC-C-----eEEEEecCHHHHHHHHHh
Confidence 45567777 9999999999999999999876 899875 2 599999999999999963
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0017 Score=48.01 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=60.2
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHH-HhCCCccCCeEEEE
Q psy10467 142 QCCMRLQGLPYEC-K----KEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL-LRHKEKIGHRLVTL 215 (304)
Q Consensus 142 ~~~v~v~nLp~~~-t----~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~-~~~~~~~~gr~i~V 215 (304)
..+|+|.||+.++ + .+.++++|..++... ....+. +-.-..|.|.+.++|.+|- .+|+..++|..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~-tF~~lk-----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDT-TFQYFK-----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC-EEEEET-----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc-ceeecC-----cceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4579999998765 2 257899999999886 455553 3335799999999999999 67999999999999
Q ss_pred EEcCCcc
Q psy10467 216 VMSGAQW 222 (304)
Q Consensus 216 ~~~~~~~ 222 (304)
+.+.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9988543
No 385
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.14 E-value=0.00052 Score=52.88 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=59.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCC---------CC-----cccEEEEEecCHHHHHHHHHhCCC
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYA---------GR-----CTGVAYIQFVDKENAEKALLRHKE 206 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~---------g~-----~~G~afV~f~~~~~a~~A~~~~~~ 206 (304)
....|.|-|.|.+.+.. |.+.|+++|.|.+.+.+..+.. .+ ....-.|+|++..+|.+||..||.
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 34568999998777665 7789999998874332221100 01 234678999999999999999999
Q ss_pred ccCCeEEEEEEcCCcc
Q psy10467 207 KIGHRLVTLVMSGAQW 222 (304)
Q Consensus 207 ~~~gr~i~V~~~~~~~ 222 (304)
.|+|..|-|.+..+..
T Consensus 85 ii~G~mIGV~Py~~~~ 100 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKDA 100 (132)
T ss_dssp EETTEECEEEECCHHH
T ss_pred EeCcEEEEEEECCHHH
Confidence 9999999999987653
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.94 E-value=0.00075 Score=49.31 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=45.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHh
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~ 203 (304)
+.++| +.|.+....||.++|+.||.+. |.++.| | -|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~--I~WidD-T-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-T-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE--EEEEET-T-----EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE--EEEEcC-C-----eEEEEecCHHHHHHHHHh
Confidence 45666 9999999999999999999775 888875 2 599999999999999963
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.91 E-value=0.0039 Score=47.30 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhCCCccCC-eEEEEEEc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGH-RLVTLVMS 218 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~g-r~i~V~~~ 218 (304)
.....|.|-|.|.+. -..|...|++||.|.+ ... .++ .-.-.|.|.+..+|++||.+||..|+| -.|-|.++
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~-~~~---~~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILK-HVM---SNT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEE-EEE---CSS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEE-ecc---CCC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 456789999999886 5668889999999872 333 222 247899999999999999999999985 77899887
Q ss_pred CCc
Q psy10467 219 GAQ 221 (304)
Q Consensus 219 ~~~ 221 (304)
..+
T Consensus 95 ~d~ 97 (119)
T 1wwh_A 95 IDK 97 (119)
T ss_dssp CCH
T ss_pred CCH
Confidence 654
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.12 E-value=0.019 Score=41.52 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=48.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeC-CC--CCcccEEEEEecCHHHHHHHH-HhCCCcc
Q psy10467 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YA--GRCTGVAYIQFVDKENAEKAL-LRHKEKI 208 (304)
Q Consensus 143 ~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~-~~--g~~~G~afV~f~~~~~a~~A~-~~~~~~~ 208 (304)
.+|.|++||.+.|++++.+.++.+..+. -...+.. .+ -..-.-|||.|.+.+++..-. ..+|+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d-~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD-YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE-EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce-EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4699999999999999999999886543 2344333 11 123357999999999998888 4588765
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.42 E-value=0.011 Score=44.90 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.4
Q ss_pred eeEEEEeCCHHHHHHHHHHcCCcCCCc-eEEEEecCCC
Q psy10467 44 GEADVEFSSVDDAQRALQRHKSNMGDR-YIELYMEEGT 80 (304)
Q Consensus 44 G~aFV~F~s~edA~~Al~~~~~~i~~r-~I~V~~s~~~ 80 (304)
..-.|.|.++.+|++||.+++..|++. -|-|.++.+.
T Consensus 60 NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 60 NWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp SEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCH
T ss_pred CeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCCH
Confidence 488999999999999999999999865 6788886544
No 390
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.0086 Score=44.57 Aligned_cols=42 Identities=26% Similarity=0.232 Sum_probs=34.2
Q ss_pred ceEEEeeCCCCCceeeEEEEeCCHHHHHHHH-HHcCCcCCCceEEEEe
Q psy10467 30 VNILLLTDDAGRSSGEADVEFSSVDDAQRAL-QRHKSNMGDRYIELYM 76 (304)
Q Consensus 30 ~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al-~~~~~~i~~r~I~V~~ 76 (304)
..|.+.-|..| |+|+|++...|-+|. ..++..+.||+|.+..
T Consensus 54 ~KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 54 RKILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp SEEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred eEEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 46777766544 999999999999986 6677999999998865
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.13 E-value=0.028 Score=52.70 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=40.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHHhC
Q psy10467 142 QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204 (304)
Q Consensus 142 ~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~~~ 204 (304)
.+.|+|. .|..+++.+|.++|++||+|. .+.+-. ..| -||.|||.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~-~~~~~~-~~g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPIN-NHFFYE-SFG---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCC-CEEEEC-SSS---EEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcc-eEEEEc-cCC---eEEEEEeCCHHHHHHHHhcc
Confidence 4669997 799999999999999999998 355543 333 59999999999999887443
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.34 E-value=0.027 Score=43.30 Aligned_cols=72 Identities=7% Similarity=-0.007 Sum_probs=45.4
Q ss_pred cccccccchhhHHhhcCCCCcceE-EEeeCCCCC-----ceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEecCCC
Q psy10467 9 DILIHITYCLLCSQFFKPIVPVNI-LLLTDDAGR-----SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80 (304)
Q Consensus 9 dl~~~~~~~~~I~~fF~~~~~~~i-~i~~d~~Gr-----~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~s~~~ 80 (304)
.|+.+|+.||.|.+-|........ .+...+.-+ ....-.|+|+++.+|++||.++++.++|.-|-|.+..+.
T Consensus 22 ~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 22 QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCHH
T ss_pred HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHH
Confidence 466778888877764432210000 000000001 234679999999999999999999999988888886543
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.07 E-value=0.1 Score=38.30 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=41.2
Q ss_pred hhhHHhhcCCC-----C-cceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCceEEEEe
Q psy10467 17 CLLCSQFFKPI-----V-PVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76 (304)
Q Consensus 17 ~~~I~~fF~~~-----~-~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r~I~V~~ 76 (304)
...|+-||+.- + +.+|... + +-|+|+|.+.+.|++.|++-...|.+-.|.|.+
T Consensus 22 ~e~L~LYFEn~rrsGGG~V~~v~~~--~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 22 DELLTLYFENRRRSGGGPVLSWQRL--G-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp HHHHHHHHHCTTTTCCCCEEEEEEE--T-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred hhHheEEEeCCCcCCCceeeEEEEc--C-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 45788888851 2 3555543 1 568999999999999999878888888899887
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.82 E-value=0.17 Score=36.74 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=34.8
Q ss_pred hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHc
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRH 63 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~ 63 (304)
..||.++|++|+-..|.-+.|. -|||.|.+++.|..||...
T Consensus 29 t~DI~~lFs~fggv~I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 4689999999987778887654 5999999999999999864
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.72 E-value=0.11 Score=37.87 Aligned_cols=65 Identities=20% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCC------cccEEEEEecCHHHHHHHHHh-CCCcc
Q psy10467 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR------CTGVAYIQFVDKENAEKALLR-HKEKI 208 (304)
Q Consensus 140 ~~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~------~~G~afV~f~~~~~a~~A~~~-~~~~~ 208 (304)
..+-+|.|+.||.+.||+++.+.++.+-. +....--.|+ .-..|||.|.+.+++..-... +|+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~----~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPA----HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSS----EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCc----cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 34567999999999999998777665422 2222211121 224689999999999988854 88655
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.49 E-value=0.16 Score=36.95 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=34.1
Q ss_pred hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHc
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRH 63 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~ 63 (304)
..||.++|++|+-..|.-+.|. -|||.|.+++.|..||...
T Consensus 19 t~Di~~lFs~fggv~I~WidDT------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDT------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETT------EEEEEEEEECHHHHHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 4689999999986667776553 5999999999999999864
No 397
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=86.18 E-value=2.5 Score=33.91 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCC---------CCHHHHHHHh--hcCCCccceEEEeeCCCCCcccEEEEEecC-HHHHHHHHHh
Q psy10467 142 QCCMRLQGLPYE---------CKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQFVD-KENAEKALLR 203 (304)
Q Consensus 142 ~~~v~v~nLp~~---------~t~~dl~~~F--~~~g~v~~~v~~~~~~~g~~~G~afV~f~~-~~~a~~A~~~ 203 (304)
..++.|-|+|.. -..++|++.| ..|.++. |+.+.+..| ++|+|.|+|.+ ..-...|+.+
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k--v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR--VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE--EEEEECSSB-EEEEEEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce--eEecccCCC-CceeEEEEecCChHHHHHHHHH
Confidence 356888898872 2347899977 9999987 888888777 78999999995 4446666654
No 398
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.22 E-value=1.9 Score=40.94 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=43.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCccceEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q psy10467 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202 (304)
Q Consensus 141 ~~~~v~v~nLp~~~t~~dl~~~F~~~g~v~~~v~~~~~~~g~~~G~afV~f~~~~~a~~A~~ 202 (304)
....++|+ +|......+|.++|+.||.+. |.++.+ | .|||.|.+.+.|..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~--V~widd-t-----~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ--ISWIDD-T-----SAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE--EEECSS-S-----EEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE--EEEEcC-C-----eEEEEECCHHHHHHHHH
Confidence 34566665 888999999999999999775 777654 2 59999999999999993
No 399
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.87 E-value=6.9 Score=28.58 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=41.9
Q ss_pred hhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH-cCCcCCCceEEEEecC
Q psy10467 18 LLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEE 78 (304)
Q Consensus 18 ~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~-~~~~i~~r~I~V~~s~ 78 (304)
..++++|..+.. ......+ +-.=..|.|.++++|.+|-.. ++..++|+.|+|.-+.
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lk-----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFK-----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEET-----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred HHHHHHHHhhCcCcceeecC-----cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 367888888854 4444442 334579999999999999866 4488999999998854
No 400
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=60.74 E-value=8.8 Score=30.71 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=36.5
Q ss_pred hhhHHhhc--CCCCcceEEEeeCCCCCceeeEEEEeCCHH-HHHHHHHHcC
Q psy10467 17 CLLCSQFF--KPIVPVNILLLTDDAGRSSGEADVEFSSVD-DAQRALQRHK 64 (304)
Q Consensus 17 ~~~I~~fF--~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~e-dA~~Al~~~~ 64 (304)
...|.+.| ++|.+..|+.+.++.| ++|+|.|+|.+.- .-..|+...+
T Consensus 35 ~~~l~~~~~~~~F~p~kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 35 GSKLRDEYILRGFNPTRVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp SHHHHHHHHHTTCCCSEEEEEECSSB-EEEEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceeEecccCCC-CceeEEEEecCChHHHHHHHHHHH
Confidence 34677877 8998888999999888 8899999996544 4566776655
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=53.50 E-value=5.6 Score=37.14 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=25.8
Q ss_pred chhhHHhhcCCCCc-ceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHH
Q psy10467 16 YCLLCSQFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQR 62 (304)
Q Consensus 16 ~~~~I~~fF~~~~~-~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~ 62 (304)
...+|.++|+.+|. .++.+ ....| -||.|+|.+.++|+.++..
T Consensus 65 ~~~~l~~y~~~~g~i~~~~~-~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 65 SENKFLKYLSQFGPINNHFF-YESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp --CHHHHHHGGGSCCCCEEE-ECSSS---EEEEEECC---CCHHHHSS
T ss_pred CHHHHHHHHHhcCCcceEEE-EccCC---eEEEEEeCCHHHHHHHHhc
Confidence 34566677777764 44544 33334 6999999999999987754
No 402
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=41.22 E-value=59 Score=22.82 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=35.3
Q ss_pred hhhHHhhcCCCCcceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHcCCcCCCc-eEEEEe
Q psy10467 17 CLLCSQFFKPIVPVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDR-YIELYM 76 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~~~~i~~r-~I~V~~ 76 (304)
|..|++.|.-.....+.|. +|..| -+|++.|.+|.+.||......-+.. .|.|++
T Consensus 32 ~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~~~n~~~~l~ihvf~ 88 (89)
T 1vd2_A 32 CNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLYELNKDSELLIHVFP 88 (89)
T ss_dssp HHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred HHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHHHccCCCCEEEEEcc
Confidence 5667777774333445555 35555 4799999999999998655222222 566665
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=41.20 E-value=25 Score=33.14 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=34.4
Q ss_pred hhhHHhhcCCCCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 17 CLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
..+|.+.|+.++..+|..+.| -.|||.|.+.+.|..||+..+
T Consensus 453 ~~~i~~~fs~fg~v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 453 TSDLYQLFSAFGNIQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp HHHHHHHGGGGCCCEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 468999999998777777633 359999999999999998764
No 404
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=33.62 E-value=30 Score=25.74 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=26.5
Q ss_pred hhcCCCC---cceEEEeeCCCCCceeeEEEEeCCHH
Q psy10467 22 QFFKPIV---PVNILLLTDDAGRSSGEADVEFSSVD 54 (304)
Q Consensus 22 ~fF~~~~---~~~i~i~~d~~Gr~~G~aFV~F~s~e 54 (304)
+||.++. +-+|+|.+.++| ..|.|...|+++.
T Consensus 5 QF~~Gi~E~~vpdVrLtRsrdg-~~g~A~f~F~~p~ 39 (120)
T 2kvo_A 5 QFSKGVAETVVPEVRLSKSKNG-QSGMAKFYFLEPT 39 (120)
T ss_dssp ESSSSCCCCCCCEEEEEECTTS-CSEEEEEEEESCG
T ss_pred EEecCCCCCcCCceEEEEcccC-CccEEEEEECCch
Confidence 6888773 478999999988 6799999999883
No 405
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=31.59 E-value=45 Score=24.07 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhhc-CCCccceEEEeeC-----CCCCcccEEEEEecCHHHHHHHH
Q psy10467 152 YECKKEDVEKFLEG-LEIVPNGITIPHD-----YAGRCTGVAYIQFVDKENAEKAL 201 (304)
Q Consensus 152 ~~~t~~dl~~~F~~-~g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~~A~ 201 (304)
.+.+..+|++-..+ |+.-.+ +.++.. -.|+++|||.| |++.+.|.+--
T Consensus 28 ~tpsk~eirekLAk~~~~~~~-~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLE-LLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTT-TEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCC-EEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 46677888877765 344332 333322 35678888866 56666665543
No 406
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=28.20 E-value=46 Score=24.27 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCCHHHHHHHhhc-CCCccceEEEeeC-----CCCCcccEEEEEecCHHHHHH
Q psy10467 153 ECKKEDVEKFLEG-LEIVPNGITIPHD-----YAGRCTGVAYIQFVDKENAEK 199 (304)
Q Consensus 153 ~~t~~dl~~~F~~-~g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~~ 199 (304)
+.+..+|++-... |+.-.+ +.++.. -.|+++|||.| |++.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d-~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPE-TTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGG-GEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCC-EEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5677777776664 343332 333322 35688888866 567776665
No 407
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=27.83 E-value=87 Score=23.81 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHhhc-CCCccceEEEeeC-----CCCCcccEEEEEecCHHHHHH
Q psy10467 152 YECKKEDVEKFLEG-LEIVPNGITIPHD-----YAGRCTGVAYIQFVDKENAEK 199 (304)
Q Consensus 152 ~~~t~~dl~~~F~~-~g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~~ 199 (304)
.+++..||++-+.. |+.-.+ +.++.. -.|++.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d-~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKD-AVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGG-GEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCC-EEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 36788899888865 454333 333333 35678888877 566666655
No 408
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=25.63 E-value=1.7e+02 Score=21.01 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=32.8
Q ss_pred hhhHHhhcCCCCcceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 17 CLLCSQFFKPIVPVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 17 ~~~I~~fF~~~~~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
...|.++|..+....+.|. .|.+| =.|.|.+.++...|+...+
T Consensus 48 ~~~V~~lFp~l~~~~f~l~Y~DedG-----DlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 48 LSRVAVLFPALRPGGFQAHYRAERG-----DLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp HHHHHHHCTTSCSSCEEEEEECTTC-----CEEEECSHHHHHHHHHHCC
T ss_pred HHHHHHHccccCCCcEEEEEECCCC-----CEEEecCHHHHHHHHHhcC
Confidence 4557778887765566666 56666 4799999999999998765
No 409
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.55 E-value=49 Score=23.89 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhhcC-CCccceEEEeeC-----CCCCcccEEEEEecCHHHHHH
Q psy10467 152 YECKKEDVEKFLEGL-EIVPNGITIPHD-----YAGRCTGVAYIQFVDKENAEK 199 (304)
Q Consensus 152 ~~~t~~dl~~~F~~~-g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~~ 199 (304)
.+.+..+|++-..+. +.-.+ +.++.. -.|+++|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d-~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQ-VLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCST-TEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCC-EEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567778888777653 43332 233222 35688888866 567777655
No 410
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=24.81 E-value=70 Score=22.32 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=39.6
Q ss_pred CcccccccccccccchhhHHhhcCCCCcceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHc
Q psy10467 2 RFSFYVIDILIHITYCLLCSQFFKPIVPVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRH 63 (304)
Q Consensus 2 ~~~~te~dl~~~~~~~~~I~~fF~~~~~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~ 63 (304)
||++.......|-.=+..|+.+|. +...++.|. .|.+| -.|.+.+.++..+||...
T Consensus 19 RFs~d~~~~~~fe~f~~lv~~lh~-L~~~~f~i~Y~D~dG-----DLlpInnDdnl~~Al~~a 75 (86)
T 1wmh_B 19 RFALPRASVSGFQEFSRLLRAVHQ-IPGLDVLLGYTDAHG-----DLLPLTNDDSLHRALASG 75 (86)
T ss_dssp EEEEEGGGCCCHHHHHHHHHHHTT-CTTCCCEEEEECTTS-----CEEECCSHHHHHHHTTSS
T ss_pred EeEccCCCCCCHHHHHHHHHHHcC-CCCCCEEEEEECCCC-----CEeeecCHHHHHHHHHhC
Confidence 466655556666666777888886 654555555 35566 589999999999999754
No 411
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=21.11 E-value=43 Score=23.99 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhhcC-CCccceEEEeeC-----CCCCcccEEEEEecCHHHH
Q psy10467 153 ECKKEDVEKFLEGL-EIVPNGITIPHD-----YAGRCTGVAYIQFVDKENA 197 (304)
Q Consensus 153 ~~t~~dl~~~F~~~-g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a 197 (304)
+.+..+|++-.... +.-.+ +.++.. -.|+++|||.|. ++.+.|
T Consensus 30 tpsk~eirekLA~~~~~~~~-~vvv~~~~t~fG~gks~G~a~IY-ds~e~~ 78 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKE-LVIVDNNKQLTGKHEIEGYTKIY-ADKPSA 78 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCST-TEECCCCCCCSSSSEEEEEEEEE-SHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCC-EEEEEeeEecCCCceEEEEEEEE-CCHHHH
Confidence 55667776666542 33232 344433 246778888764 333333
No 412
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.52 E-value=2.3e+02 Score=20.83 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=33.6
Q ss_pred chhhHHhhcCCCCcceEEEe-eCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 16 YCLLCSQFFKPIVPVNILLL-TDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 16 ~~~~I~~fF~~~~~~~i~i~-~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
=...|.++|..+....+.|. .|.+| =.|.|.+.++...|+...+
T Consensus 62 L~~kV~~lFp~L~~~~f~l~YkDEdG-----DlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 62 LLSRVAVLFPALRPGGFQAHYRAERG-----DLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp HHHHHHHHCTTSCSSCEEEEEECTTC-----CEEEECSHHHHHHHHHHCC
T ss_pred HHHHHHHHccccCCCcEEEEEECCCC-----CEEEecCHHHHHHHHHhcC
Confidence 35567888887765566666 56666 3799999999999998765
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.24 E-value=1.2e+02 Score=21.02 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=24.6
Q ss_pred CCcceEEEeeCCCCCceeeEEEEeCCHHHHHHHHHHcC
Q psy10467 27 IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHK 64 (304)
Q Consensus 27 ~~~~~i~i~~d~~Gr~~G~aFV~F~s~edA~~Al~~~~ 64 (304)
..+..|..+..+.|.. -|||.++...+|.....+.+
T Consensus 49 VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva~kig 84 (86)
T 3j21_T 49 VKVEKVNTLITPRGEK--KAYVKLKPEYSASEVAARLG 84 (86)
T ss_dssp CCEEEEEEEECTTSCE--EEEEEECTTSCHHHHHHHSS
T ss_pred CCceEEEEeEcCCCce--EEEEEcCCCCcHHHHHHhhc
Confidence 4456677766665543 49999998888887655543
No 414
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.11 E-value=78 Score=24.50 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhhc-CCCccceEEEeeC-----CCCCcccEEEEEecCHHHHHH
Q psy10467 152 YECKKEDVEKFLEG-LEIVPNGITIPHD-----YAGRCTGVAYIQFVDKENAEK 199 (304)
Q Consensus 152 ~~~t~~dl~~~F~~-~g~v~~~v~~~~~-----~~g~~~G~afV~f~~~~~a~~ 199 (304)
.+++..||++-... |+.-.+ +.++.. -.|+++|||.| |++.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d-~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDAR-NVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGG-GEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCC-EEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35677788877775 444333 333333 35678888877 566666665
Done!