Your job contains 1 sequence.
>psy10467
MRFSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRAL
QRHKSNMGDRYIELYMEEGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAK
RSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYA
GRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLSPPLTNETPISRLDLT
GSPVRSTICVLCHPLTPRSVRPRSVRQSEHEWWALARLGSFLISRTHQIIIPRSYHRRPG
YGEL
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10467
(304 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-060421-3878 - symbol:zgc:136953 "zgc:136953... 297 4.4e-34 2
ZFIN|ZDB-GENE-030131-275 - symbol:hnrnph1l "heterogeneous... 258 1.2e-29 2
UNIPROTKB|F1LV61 - symbol:F1LV61 "Uncharacterized protein... 234 4.1e-26 2
UNIPROTKB|E5RGV0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 271 1.4e-23 1
UNIPROTKB|P52597 - symbol:HNRNPF "Heterogeneous nuclear r... 272 1.5e-23 1
UNIPROTKB|Q60HC3 - symbol:HNRNPF "Heterogeneous nuclear r... 272 1.5e-23 1
MGI|MGI:2138741 - symbol:Hnrnpf "heterogeneous nuclear ri... 269 3.5e-23 1
RGD|620366 - symbol:Hnrnpf "heterogeneous nuclear ribonuc... 269 3.5e-23 1
UNIPROTKB|D6RBM0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 265 6.1e-23 1
UNIPROTKB|F1RG16 - symbol:HNRNPF "Uncharacterized protein... 266 7.6e-23 1
UNIPROTKB|E2RB90 - symbol:HNRNPF "Uncharacterized protein... 266 7.6e-23 1
UNIPROTKB|Q5E9J1 - symbol:HNRNPF "Heterogeneous nuclear r... 265 9.9e-23 1
UNIPROTKB|I3L816 - symbol:HNRNPH1 "Uncharacterized protei... 265 1.2e-22 1
UNIPROTKB|E9PCY7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 265 1.3e-22 1
UNIPROTKB|E2R8D6 - symbol:E2R8D6 "Uncharacterized protein... 265 1.4e-22 1
UNIPROTKB|P31943 - symbol:HNRNPH1 "Heterogeneous nuclear ... 265 1.6e-22 1
UNIPROTKB|F2Z5H9 - symbol:HNRNPH1 "Uncharacterized protei... 265 1.6e-22 1
MGI|MGI:1891925 - symbol:Hnrnph1 "heterogeneous nuclear r... 265 1.6e-22 1
UNIPROTKB|G3V9Q3 - symbol:Hnrph1 "Heterogeneous nuclear r... 265 1.6e-22 1
UNIPROTKB|E1BF20 - symbol:HNRNPH1 "Uncharacterized protei... 265 2.1e-22 1
UNIPROTKB|G8JLB6 - symbol:HNRNPH1 "Heterogeneous nuclear ... 265 2.1e-22 1
UNIPROTKB|F1NBV8 - symbol:HNRNPH1 "Uncharacterized protei... 265 2.4e-22 1
UNIPROTKB|F1NJJ4 - symbol:HNRNPH1 "Uncharacterized protei... 265 2.5e-22 1
UNIPROTKB|F1NJJ5 - symbol:HNRNPH1 "Uncharacterized protei... 265 2.9e-22 1
UNIPROTKB|F1NEG6 - symbol:HNRNPH1 "Uncharacterized protei... 265 3.0e-22 1
RGD|620840 - symbol:Hnrph1 "heterogeneous nuclear ribonuc... 261 4.6e-22 1
UNIPROTKB|Q8VHV7 - symbol:Hnrnph1 "Heterogeneous nuclear ... 261 4.6e-22 1
UNIPROTKB|E2RJH5 - symbol:HNRNPH2 "Uncharacterized protei... 261 4.6e-22 1
MGI|MGI:1201779 - symbol:Hnrnph2 "heterogeneous nuclear r... 261 4.6e-22 1
UNIPROTKB|P55795 - symbol:HNRNPH2 "Heterogeneous nuclear ... 261 4.6e-22 1
UNIPROTKB|A5D9B4 - symbol:HNRPH2 "Heterogeneous nuclear r... 261 4.6e-22 1
UNIPROTKB|Q3SZF3 - symbol:HNRNPH2 "Heterogeneous nuclear ... 261 4.6e-22 1
RGD|1549784 - symbol:Hnrnph2 "heterogeneous nuclear ribon... 261 4.6e-22 1
ZFIN|ZDB-GENE-040426-1856 - symbol:hnrnph1 "heterogeneous... 257 7.0e-22 1
RGD|1310019 - symbol:Hnrnph3 "heterogeneous nuclear ribon... 253 1.1e-21 1
UNIPROTKB|E1BB17 - symbol:HNRNPH3 "Uncharacterized protei... 253 1.1e-21 1
UNIPROTKB|F1P8D3 - symbol:HNRNPH3 "Uncharacterized protei... 253 1.1e-21 1
UNIPROTKB|P31942 - symbol:HNRNPH3 "Heterogeneous nuclear ... 253 1.1e-21 1
UNIPROTKB|I3LFQ0 - symbol:HNRNPH3 "Uncharacterized protei... 253 1.1e-21 1
UNIPROTKB|Q5F3D2 - symbol:HNRNPH3 "Uncharacterized protei... 248 3.9e-21 1
UNIPROTKB|E5RGH4 - symbol:HNRNPH1 "Heterogeneous nuclear ... 247 4.9e-21 1
UNIPROTKB|I3L5T6 - symbol:I3L5T6 "Uncharacterized protein... 210 4.6e-20 2
UNIPROTKB|F5H5I6 - symbol:GRSF1 "G-rich sequence factor 1... 180 2.3e-18 2
UNIPROTKB|A6QPB2 - symbol:GRSF1 "Uncharacterized protein"... 178 4.2e-18 2
UNIPROTKB|H0Y8R1 - symbol:GRSF1 "G-rich sequence factor 1... 180 5.0e-18 2
UNIPROTKB|F1MZF0 - symbol:GRSF1 "Uncharacterized protein"... 178 7.1e-18 2
UNIPROTKB|H0YAK1 - symbol:GRSF1 "G-rich sequence factor 1... 180 7.2e-18 2
UNIPROTKB|Q12849 - symbol:GRSF1 "G-rich sequence factor 1... 180 9.1e-18 2
UNIPROTKB|E1BMP6 - symbol:E1BMP6 "Uncharacterized protein... 220 1.2e-17 1
UNIPROTKB|F1LRK4 - symbol:Grsf1 "Protein Grsf1" species:1... 173 2.0e-17 2
UNIPROTKB|D6RIU0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 213 2.0e-17 1
UNIPROTKB|F1RUP2 - symbol:GRSF1 "Uncharacterized protein"... 177 2.2e-17 2
UNIPROTKB|F1LMB8 - symbol:Grsf1 "Protein Grsf1" species:1... 173 7.2e-17 2
UNIPROTKB|F1Q0B7 - symbol:GRSF1 "Uncharacterized protein"... 180 9.6e-17 2
MGI|MGI:106479 - symbol:Grsf1 "G-rich RNA sequence bindin... 171 1.3e-16 2
UNIPROTKB|G3N1Y9 - symbol:G3N1Y9 "Uncharacterized protein... 214 1.9e-16 1
UNIPROTKB|D6RFM3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 198 7.7e-16 1
UNIPROTKB|E7EN40 - symbol:HNRNPH1 "Heterogeneous nuclear ... 189 7.7e-15 1
FB|FBgn0259139 - symbol:glo "glorund" species:7227 "Droso... 157 2.2e-14 2
ZFIN|ZDB-GENE-060825-196 - symbol:grsf1 "G-rich RNA seque... 157 7.3e-13 2
WB|WBGene00006367 - symbol:sym-2 species:6239 "Caenorhabd... 137 7.4e-13 2
UNIPROTKB|I3L687 - symbol:HNRNPH2 "Uncharacterized protei... 189 1.4e-12 1
UNIPROTKB|H0YB39 - symbol:HNRNPH1 "Heterogeneous nuclear ... 127 2.9e-11 2
WB|WBGene00020936 - symbol:hrpf-1 species:6239 "Caenorhab... 129 3.1e-11 2
TAIR|locus:2156897 - symbol:AT5G66010 species:3702 "Arabi... 113 1.2e-10 2
ZFIN|ZDB-GENE-070112-1732 - symbol:esrp1 "epithelial spli... 128 1.2e-10 2
UNIPROTKB|F1MSN9 - symbol:ESRP2 "Uncharacterized protein"... 132 2.3e-10 2
WB|WBGene00022253 - symbol:hrpf-2 species:6239 "Caenorhab... 132 2.5e-10 2
UNIPROTKB|F1P8D4 - symbol:HNRNPH1 "Uncharacterized protei... 149 3.3e-10 1
MGI|MGI:1924661 - symbol:Esrp2 "epithelial splicing regul... 140 3.9e-10 2
RGD|1310855 - symbol:Esrp2 "epithelial splicing regulator... 132 5.1e-10 2
UNIPROTKB|F1PA85 - symbol:ESRP2 "Uncharacterized protein"... 140 5.1e-10 2
UNIPROTKB|G3V8M2 - symbol:Esrp2 "Epithelial-splicing regu... 134 5.1e-10 2
UNIPROTKB|Q9H6T0 - symbol:ESRP2 "Epithelial splicing regu... 137 6.7e-10 2
UNIPROTKB|F1P509 - symbol:ESRP1 "Uncharacterized protein"... 143 7.1e-10 2
UNIPROTKB|Q5ZLR4 - symbol:ESRP2 "Epithelial splicing regu... 138 8.3e-10 2
UNIPROTKB|F5GZT4 - symbol:HNRNPH1 "Heterogeneous nuclear ... 143 1.6e-09 1
UNIPROTKB|H0YBG7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 143 1.6e-09 1
ZFIN|ZDB-GENE-081022-16 - symbol:rbm12 "RNA binding motif... 119 1.8e-09 2
UNIPROTKB|H0YBR2 - symbol:ESRP1 "Epithelial-splicing regu... 135 1.9e-09 2
ZFIN|ZDB-GENE-030131-9824 - symbol:esrp2 "epithelial spli... 145 1.9e-09 2
UNIPROTKB|F2Z5W4 - symbol:LOC100737162 "Uncharacterized p... 142 2.0e-09 1
MGI|MGI:1917326 - symbol:Esrp1 "epithelial splicing regul... 135 2.0e-09 2
UNIPROTKB|H0YBB3 - symbol:ESRP1 "Epithelial-splicing regu... 135 2.1e-09 2
RGD|1560481 - symbol:Esrp1 "epithelial splicing regulator... 131 4.1e-09 2
UNIPROTKB|Q6NXG1 - symbol:ESRP1 "Epithelial splicing regu... 135 4.2e-09 2
UNIPROTKB|F1LP81 - symbol:Esrp1 "Epithelial-splicing regu... 131 4.2e-09 2
UNIPROTKB|F1PQY5 - symbol:ESRP1 "Uncharacterized protein"... 135 4.2e-09 2
UNIPROTKB|F1MVN3 - symbol:ESRP1 "Uncharacterized protein"... 136 6.5e-09 2
UNIPROTKB|Q6DEZ7 - symbol:esrp1 "Epithelial splicing regu... 138 6.5e-09 2
UNIPROTKB|Q7ZY29 - symbol:esrp1 "Epithelial splicing regu... 138 6.5e-09 2
UNIPROTKB|F1PSN8 - symbol:ESRP1 "Uncharacterized protein"... 135 7.1e-09 2
UNIPROTKB|F1NWS6 - symbol:GRSF1 "Uncharacterized protein"... 122 7.5e-09 2
UNIPROTKB|H0YAM1 - symbol:GRSF1 "G-rich sequence factor 1... 89 8.2e-09 2
UNIPROTKB|F1RY52 - symbol:ESRP1 "Uncharacterized protein"... 135 9.4e-09 2
UNIPROTKB|I3LLW0 - symbol:RBM12 "Uncharacterized protein"... 128 1.2e-08 2
UNIPROTKB|E5RI26 - symbol:ESRP1 "Epithelial-splicing regu... 135 1.2e-08 1
UNIPROTKB|J9NZV3 - symbol:RBM12 "Uncharacterized protein"... 128 1.6e-08 2
UNIPROTKB|Q9NTZ6 - symbol:RBM12 "RNA-binding protein 12" ... 128 1.8e-08 2
UNIPROTKB|F1P982 - symbol:RBM12 "Uncharacterized protein"... 128 1.9e-08 2
WARNING: Descriptions of 30 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-060421-3878 [details] [associations]
symbol:zgc:136953 "zgc:136953" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060421-3878 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:BX530068 IPI:IPI00485717 UniGene:Dr.76052
Ensembl:ENSDART00000057651 Ensembl:ENSDART00000113082
Uniprot:B8A5E1
Length = 396
Score = 297 (109.6 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 57/102 (55%), Positives = 73/102 (71%)
Query: 118 RAKRSEMDWALKRQGAV-LSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIP 176
R+ RSEMDW LKR G GS+ C +RL+GLP+ C KE++ +F GL+IVPNGIT+P
Sbjct: 84 RSNRSEMDWVLKRSGPTDYDGSS--GCMLRLRGLPFGCSKEEIVQFFSGLKIVPNGITLP 141
Query: 177 HDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
DY GR TG A++QF KE AEKAL +HKE+IGHR + + S
Sbjct: 142 MDYQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKS 183
Score = 155 (59.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ PV + + G+S+GEADVEF S +DA A+ + K++M RYIEL++ +
Sbjct: 307 AHFFGPLTPVRVHIDMGPNGKSTGEADVEFRSHEDAVSAMSKDKNHMQHRYIELFLNSTS 366
Query: 81 SSKEANGRGTGGF----GGVKS 98
S GRG GGF GG+ S
Sbjct: 367 SGPSEMGRG-GGFYSSSGGMSS 387
Score = 125 (49.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 126 QFFSGLKIVPNGITLPMDYQGRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIF 181
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVP--NGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
+R++GLP+ C +E+V F +IV NG+ GR +G A+++ E+ +KAL
Sbjct: 10 VRIRGLPWSCTQEEVASFFSDCDIVGKVNGVCFTFSKEGRPSGEAFVELKSSEDFKKALA 69
Query: 203 RHKEKIGHRLVTLVMS 218
+ ++ +GHR + + S
Sbjct: 70 KDRKYMGHRYIEVFRS 85
Score = 89 (36.4 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
GR SGEA VE S +D ++AL + + MG RYIE++
Sbjct: 48 GRPSGEAFVELKSSEDFKKALAKDRKYMGHRYIEVF 83
Score = 86 (35.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 31/133 (23%), Positives = 54/133 (40%)
Query: 87 GRG-TGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCM 145
G G +GG+GG + G +C + + R R + +
Sbjct: 234 GSGYSGGYGGFDNYN-GFNNYCFDNGMFEERVRGDRGRGGTGTHGYSNDSNSGFHSGHFV 292
Query: 146 RLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHK 205
++GLP+ + DV F L P + I G+ TG A ++F E+A A+ + K
Sbjct: 293 HMRGLPFRATESDVAHFFGPL--TPVRVHIDMGPNGKSTGEADVEFRSHEDAVSAMSKDK 350
Query: 206 EKIGHRLVTLVMS 218
+ HR + L ++
Sbjct: 351 NHMQHRYIELFLN 363
>ZFIN|ZDB-GENE-030131-275 [details] [associations]
symbol:hnrnph1l "heterogeneous nuclear
ribonucleoprotein H1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC044161 IPI:IPI00512644 RefSeq:NP_997754.1
UniGene:Dr.782 ProteinModelPortal:Q803W8 SMR:Q803W8 STRING:Q803W8
PRIDE:Q803W8 GeneID:321556 KEGG:dre:321556 CTD:321556
InParanoid:Q803W8 NextBio:20807425 ArrayExpress:Q803W8 Bgee:Q803W8
Uniprot:Q803W8
Length = 407
Score = 258 (95.9 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 49/101 (48%), Positives = 68/101 (67%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G + D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 83 KSNNVEMDWVLKHTGPNCPETEGDGL-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 141
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF ++ AEKAL +HKE+IGHR + + S
Sbjct: 142 DFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKS 182
Score = 203 (76.5 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 65/205 (31%), Positives = 93/205 (45%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF IVP I L D GRS+GEA V+F+S D A++AL++HK +G RYIE++
Sbjct: 125 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSR 184
Query: 80 TSSKEANGRGTGGFGGVKSTPY----GVGIFCISQFLAKWMRRAKRSEMDWALK--RQGA 133
+ G G + PY G G R +R + R G
Sbjct: 185 AEVRTHYEPPRKGMGMQRPGPYDRPSGGGRGYNGMSRGGSFDRMRRGGYGGGVSDGRYGD 244
Query: 134 VLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVD 193
+ + C+ ++GLPY + D+ F L V I I D GR TG A ++F
Sbjct: 245 GGNFQSTTGHCVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFAT 302
Query: 194 KENAEKALLRHKEKIGHRLVTLVMS 218
E+A A+ K + HR V L ++
Sbjct: 303 HEDAVAAMSNDKANMQHRYVELFLN 327
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ PV + + GR +GEADVEF++ +DA A+ K+NM RY+EL++ G
Sbjct: 273 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSNDKANMQHRYVELFLNSTAGG 332
Query: 81 SSKEANGRGTGGFGGVKSTPYGVG 104
S+ G+ GG G S YG G
Sbjct: 333 SNGGYGGQMMGGMGNQSS--YGHG 354
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYA--GRCTGVAYIQFVDKENAEKALL 202
+R++GLP+ C E+V +F G +I NG I Y GR +G A+++ +++ + A+
Sbjct: 9 VRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAVK 68
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 69 KDRESMGHRYVEVFKS 84
Score = 90 (36.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
GR SGEA VE S DD + A+++ + +MG RY+E++
Sbjct: 47 GRPSGEAFVELESEDDLKIAVKKDRESMGHRYVEVF 82
>UNIPROTKB|F1LV61 [details] [associations]
symbol:F1LV61 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
IPI:IPI00952226 ProteinModelPortal:F1LV61
Ensembl:ENSRNOT00000020819 Uniprot:F1LV61
Length = 408
Score = 234 (87.4 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 53/111 (47%), Positives = 68/111 (61%)
Query: 121 RSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYA 180
R+ MDW LKR G + SA D + LQGLP C KE+ +F GLEIVPNG T+P
Sbjct: 91 RTGMDWVLKRSGPNSAYSANDGF-VSLQGLPCGCTKEEAIQFFSGLEIVPNGNTLPVYLE 149
Query: 181 GRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS---PPL 228
G+ TG A++QF +E AEKA +HKE+IGHR + + S + S PPL
Sbjct: 150 GKITGEAFVQFASQELAEKAFGKHKERIGHRYIEVFKSSQEEVRSHSDPPL 200
Score = 84 (34.6 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
GR SGEA V+ S +D + AL+ + +MG RYIE++ T
Sbjct: 52 GRQSGEAFVKPESEEDVKLALKEDRESMGHRYIEVFKPHRT 92
>UNIPROTKB|E5RGV0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00974526
ProteinModelPortal:E5RGV0 SMR:E5RGV0 Ensembl:ENST00000519056
ArrayExpress:E5RGV0 Bgee:E5RGV0 Uniprot:E5RGV0
Length = 155
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 56/130 (43%), Positives = 80/130 (61%)
Query: 89 GTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQ 148
G G V+ P+ + +F + + ++ EMDW LK G +A D +RL+
Sbjct: 8 GEGFVVKVRGLPWSCSADEVQRFFSVF--KSNNVEMDWVLKHTGPNSPDTANDGF-VRLR 64
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GLP+ C KE++ +F GLEIVPNGIT+P D+ GR TG A++QF +E AEKAL +HKE+I
Sbjct: 65 GLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERI 124
Query: 209 GHRLVTLVMS 218
GHR + + S
Sbjct: 125 GHRYIEIFKS 134
Score = 129 (50.5 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 77 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 132
>UNIPROTKB|P52597 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043484 "regulation of RNA splicing" evidence=IDA;IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC;TAS] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0000398 GO:GO:0071013
EMBL:CH471160 EMBL:AL512654 HOGENOM:HOG000220896 HOVERGEN:HBG055557
HPA:HPA001359 HPA:HPA016884 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:L28010 EMBL:AK001364 EMBL:BC001432 EMBL:BC004254
EMBL:BC015580 EMBL:BC016736 EMBL:BC106008 IPI:IPI00003881
PIR:S43484 RefSeq:NP_001091674.1 RefSeq:NP_001091675.1
RefSeq:NP_001091676.1 RefSeq:NP_001091677.1 RefSeq:NP_001091678.1
RefSeq:NP_004957.1 UniGene:Hs.712955 UniGene:Hs.808 PDB:2HGL
PDB:2HGM PDB:2HGN PDB:2KFY PDB:2KG0 PDB:2KG1 PDB:3TFY PDBsum:2HGL
PDBsum:2HGM PDBsum:2HGN PDBsum:2KFY PDBsum:2KG0 PDBsum:2KG1
PDBsum:3TFY ProteinModelPortal:P52597 SMR:P52597 IntAct:P52597
MINT:MINT-1157890 STRING:P52597 PhosphoSite:P52597 DMDM:1710628
OGP:P52597 PaxDb:P52597 PeptideAtlas:P52597 PRIDE:P52597 DNASU:3185
Ensembl:ENST00000337970 Ensembl:ENST00000356053
Ensembl:ENST00000357065 Ensembl:ENST00000443950
Ensembl:ENST00000544000 GeneID:3185 KEGG:hsa:3185 UCSC:uc001jar.2
GeneCards:GC10M043881 HGNC:HGNC:5039 MIM:601037 neXtProt:NX_P52597
PharmGKB:PA162391271 InParanoid:P52597 PhylomeDB:P52597
ChiTaRS:HNRNPF EvolutionaryTrace:P52597 GenomeRNAi:3185
NextBio:12654 ArrayExpress:P52597 Bgee:P52597 CleanEx:HS_HNRNPF
Genevestigator:P52597 GermOnline:ENSG00000169813 Uniprot:P52597
Length = 415
Score = 272 (100.8 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 75/186 (40%), Positives = 99/186 (53%)
Query: 52 SVDDAQRALQR---HKSNMGDRYIELYMEEGTSSKEAN---GRGTGGFGGVKSTPYGVGI 105
SV+D Q L H G +I Y EG S EA G +K +G
Sbjct: 23 SVEDVQNFLSDCTIHDGAAGVHFI--YTREGRQSGEAFVELGSEDDVKMALKKDRESMGH 80
Query: 106 FCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEG 165
I F ++ R+EMDW LK G + SA D +RL+GLP+ C KE++ +F G
Sbjct: 81 RYIEVF------KSHRTEMDWVLKHSGPNSADSANDGF-VRLRGLPFGCTKEEIVQFFSG 133
Query: 166 LEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS 225
LEIVPNGIT+P D G+ TG A++QF +E AEKAL +HKE+IGHR + + S + S
Sbjct: 134 LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRS 193
Query: 226 ---PPL 228
PPL
Sbjct: 194 YSDPPL 199
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ ++A A+ + ++NM RYIEL++ T +
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 367
Query: 83 KEANG 87
+NG
Sbjct: 368 --SNG 370
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D G+ +GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 113 (44.8 bits), Expect = 0.00086, P = 0.00086
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPN--GITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++L+GLP+ C EDV+ FL I G+ + GR +G A+++ +++ + AL
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR + + S
Sbjct: 73 KDRESMGHRYIEVFKS 88
>UNIPROTKB|Q60HC3 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9541 "Macaca fascicularis" [GO:0003727 "single-stranded RNA
binding" evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HOVERGEN:HBG055557 InterPro:IPR012996 Pfam:PF08080
EMBL:AB125204 EMBL:AB168246 ProteinModelPortal:Q60HC3 SMR:Q60HC3
PRIDE:Q60HC3 Uniprot:Q60HC3
Length = 415
Score = 272 (100.8 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 75/186 (40%), Positives = 99/186 (53%)
Query: 52 SVDDAQRALQR---HKSNMGDRYIELYMEEGTSSKEAN---GRGTGGFGGVKSTPYGVGI 105
SV+D Q L H G +I Y EG S EA G +K +G
Sbjct: 23 SVEDVQNFLSDCTIHDGAAGVHFI--YTREGRQSGEAFVELGSEDDVKMALKKDRESMGH 80
Query: 106 FCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEG 165
I F ++ R+EMDW LK G + SA D +RL+GLP+ C KE++ +F G
Sbjct: 81 RYIEVF------KSHRTEMDWVLKHSGPNSADSANDGF-VRLRGLPFGCTKEEIVQFFSG 133
Query: 166 LEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS 225
LEIVPNGIT+P D G+ TG A++QF +E AEKAL +HKE+IGHR + + S + S
Sbjct: 134 LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRS 193
Query: 226 ---PPL 228
PPL
Sbjct: 194 YSDPPL 199
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ ++A A+ + ++NM RYIEL++ T +
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 367
Query: 83 KEANG 87
+NG
Sbjct: 368 --SNG 370
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D G+ +GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 113 (44.8 bits), Expect = 0.00086, P = 0.00086
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPN--GITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++L+GLP+ C EDV+ FL I G+ + GR +G A+++ +++ + AL
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR + + S
Sbjct: 73 KDRESMGHRYIEVFKS 88
>MGI|MGI:2138741 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2138741
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0003727
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD ChiTaRS:HNRNPF EMBL:AK076478 EMBL:BC018185
EMBL:BC025481 EMBL:BC027003 EMBL:BC029163 EMBL:BC029764
EMBL:BC033483 EMBL:BC089313 IPI:IPI00226073 IPI:IPI00798511
RefSeq:NP_001159899.1 RefSeq:NP_001159900.1 RefSeq:NP_001159901.1
RefSeq:NP_001159902.1 RefSeq:NP_001159903.1 RefSeq:NP_001159904.1
RefSeq:NP_598595.1 UniGene:Mm.422979 UniGene:Mm.476420 PDB:2DB1
PDBsum:2DB1 ProteinModelPortal:Q9Z2X1 SMR:Q9Z2X1 IntAct:Q9Z2X1
STRING:Q9Z2X1 PhosphoSite:Q9Z2X1 REPRODUCTION-2DPAGE:Q9Z2X1
PaxDb:Q9Z2X1 PRIDE:Q9Z2X1 Ensembl:ENSMUST00000035493
Ensembl:ENSMUST00000163168 Ensembl:ENSMUST00000167182
Ensembl:ENSMUST00000167657 Ensembl:ENSMUST00000170346
Ensembl:ENSMUST00000180020 Ensembl:ENSMUST00000180341 GeneID:98758
KEGG:mmu:98758 UCSC:uc009dle.2 InParanoid:Q9Z2X1
EvolutionaryTrace:Q9Z2X1 NextBio:353639 Bgee:Q9Z2X1
Genevestigator:Q9Z2X1 GermOnline:ENSMUSG00000042079 Uniprot:Q9Z2X1
Length = 415
Score = 269 (99.8 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 56/114 (49%), Positives = 76/114 (66%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ R+EMDW LK G + SA D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSHRTEMDWVLKHSGPNSADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS---PPL 228
D G+ TG A++QF +E AEKAL +HKE+IGHR + + S + S PPL
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPL 199
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ ++A A+ + ++NM RYIEL++ T +
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 367
Query: 83 KEANG 87
+NG
Sbjct: 368 --SNG 370
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D G+ +GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 184
>RGD|620366 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0043484 "regulation of RNA splicing"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:620366 GO:GO:0005634 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HSSP:Q9Z2X1 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:AB022209 EMBL:BC097275 EMBL:BC103634
IPI:IPI00210357 RefSeq:NP_001032362.1 RefSeq:NP_001032363.1
RefSeq:NP_001032364.1 RefSeq:NP_071792.1 UniGene:Rn.144596
ProteinModelPortal:Q794E4 SMR:Q794E4 IntAct:Q794E4 STRING:Q794E4
PhosphoSite:Q794E4 PRIDE:Q794E4 Ensembl:ENSRNOT00000019529
GeneID:64200 KEGG:rno:64200 UCSC:RGD:620366 InParanoid:Q794E4
NextBio:612884 Genevestigator:Q794E4 GermOnline:ENSRNOG00000014562
Uniprot:Q794E4
Length = 415
Score = 269 (99.8 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 56/114 (49%), Positives = 76/114 (66%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ R+EMDW LK G + SA D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSHRTEMDWVLKHSGPNSADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS---PPL 228
D G+ TG A++QF +E AEKAL +HKE+IGHR + + S + S PPL
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPL 199
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ ++A A+ + ++NM RYIEL++ T +
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 367
Query: 83 KEANG 87
+NG
Sbjct: 368 --SNG 370
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D G+ +GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 184
>UNIPROTKB|D6RBM0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HOGENOM:HOG000220896 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 IPI:IPI00964535 ProteinModelPortal:D6RBM0
SMR:D6RBM0 Ensembl:ENST00000505811 ArrayExpress:D6RBM0 Bgee:D6RBM0
Uniprot:D6RBM0
Length = 212
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
>UNIPROTKB|F1RG16 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
KO:K12898 InterPro:IPR012996 Pfam:PF08080 CTD:3185 OMA:SDCTIRD
EMBL:CU468599 RefSeq:XP_001929089.1 RefSeq:XP_003359253.1
RefSeq:XP_003483523.1 UniGene:Ssc.93755 Ensembl:ENSSSCT00000011169
GeneID:100155475 KEGG:ssc:100155475 Uniprot:F1RG16
Length = 414
Score = 266 (98.7 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ R+EMDW LK G + +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSHRTEMDWVLKHSGPNSADTANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS---PPL 228
D G+ TG A++QF +E AEKAL +HKE+IGHR + + S + S PPL
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPL 199
Score = 131 (51.2 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ D+A A+ + ++NM RYIEL++ T +
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSKDRANMQHRYIELFLNSTTGA 367
Query: 83 KEANG 87
+NG
Sbjct: 368 --SNG 370
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D G+ +GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPN--GITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++L+GLP+ C EDV+ FL I G+ + GR +G A+++ +++ + AL
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR + + S
Sbjct: 73 KDRESMGHRYIEVFKS 88
>UNIPROTKB|E2RB90 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0000166
GO:GO:0003727 Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0071013
GeneTree:ENSGT00620000087736 KO:K12898 InterPro:IPR012996
Pfam:PF08080 CTD:3185 OMA:SDCTIRD EMBL:AAEX03015383
RefSeq:XP_848697.1 RefSeq:XP_856894.1 RefSeq:XP_856973.1
ProteinModelPortal:E2RB90 Ensembl:ENSCAFT00000011299 GeneID:477757
KEGG:cfa:477757 NextBio:20853178 Uniprot:E2RB90
Length = 414
Score = 266 (98.7 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ R+EMDW LK G + +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSHRTEMDWVLKHSGPNSADTANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS---PPL 228
D G+ TG A++QF +E AEKAL +HKE+IGHR + + S + S PPL
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPL 199
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ ++A A+ + ++NM RYIEL++ T +
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 367
Query: 83 KEANG 87
+NG
Sbjct: 368 --SNG 370
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D G+ +GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPN--GITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++L+GLP+ C EDV+ FL I G+ + GR +G A+++ +++ + AL
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR + + S
Sbjct: 73 KDRESMGHRYIEVFKS 88
>UNIPROTKB|Q5E9J1 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0003727 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484 HSSP:Q9Z2X1
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 EMBL:BT020929 EMBL:BC102955
IPI:IPI00685278 RefSeq:NP_001014860.1 UniGene:Bt.23170
ProteinModelPortal:Q5E9J1 SMR:Q5E9J1 STRING:Q5E9J1 PRIDE:Q5E9J1
Ensembl:ENSBTAT00000011658 GeneID:506917 KEGG:bta:506917 CTD:3185
eggNOG:NOG326351 InParanoid:Q5E9J1 OMA:SDCTIRD NextBio:20867801
Uniprot:Q5E9J1
Length = 414
Score = 265 (98.3 bits), Expect = 9.9e-23, P = 9.9e-23
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ R+EMDW LK G + +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSHRTEMDWVLKHSGPNSADTANDGF-VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFLS---PPL 228
D G+ TG A++QF +E AEKAL +HKE+IGHR + + S + S PPL
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPL 199
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ ++A A+ + ++NM RYIEL++ T +
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 367
Query: 83 KEANG 87
+NG
Sbjct: 368 --SNG 370
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D G+ +GEA V+F+S + A++AL +HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPN--GITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++L+GLP+ C EDV+ FL I G+ + GR +G A+++ +++ + AL
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR + + S
Sbjct: 73 KDRESMGHRYIEVFKS 88
>UNIPROTKB|I3L816 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU915704
Ensembl:ENSSSCT00000031735 Uniprot:I3L816
Length = 423
Score = 265 (98.3 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 86 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 144
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 145 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 185
Score = 143 (55.4 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ G
Sbjct: 307 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGA 366
Query: 81 SSKEANGRGTGGFGGVKSTPYG 102
S + GG G + YG
Sbjct: 367 SGGAYGSQMLGGMGLSNQSSYG 388
Score = 129 (50.5 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 128 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 183
Score = 109 (43.4 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 289 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 346
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 347 DKANMQHRYVELFLN 361
Score = 92 (37.4 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 50 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 109
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 110 GFVRLRGLPFGCSKEEIVQFFS 131
Score = 51 (23.0 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFL 112
G +S++ +G GG+GG +S+ G G F I L
Sbjct: 389 GPASQQLSGGYGGGYGG-QSSMSGYGKFSIKSTL 421
>UNIPROTKB|E9PCY7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00908896
ProteinModelPortal:E9PCY7 SMR:E9PCY7 PRIDE:E9PCY7
Ensembl:ENST00000510411 ArrayExpress:E9PCY7 Bgee:E9PCY7
Uniprot:E9PCY7
Length = 429
Score = 265 (98.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 143 (55.4 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ G
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGA 367
Query: 81 SSKEANGRGTGGFGGVKSTPYG 102
S + GG G + YG
Sbjct: 368 SGGAYGSQMLGGMGLSNQSSYG 389
Score = 129 (50.5 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 390 GPASQQLSGGYGGGYGGQSS 409
>UNIPROTKB|E2R8D6 [details] [associations]
symbol:E2R8D6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AAEX03007686
Ensembl:ENSCAFT00000000520 Uniprot:E2R8D6
Length = 439
Score = 265 (98.3 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 127 (49.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 109 (43.4 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
>UNIPROTKB|P31943 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008266 "poly(U) RNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008266 GO:GO:0000166
GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0043484
GO:GO:0000398 GO:GO:0071013 EMBL:CH471165 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557 EMBL:L22009 EMBL:CR456778
EMBL:AK124530 EMBL:BC001348 IPI:IPI00013881 PIR:I39358
RefSeq:NP_001244222.1 RefSeq:NP_005511.1 UniGene:Hs.604001 PDB:2LXU
PDBsum:2LXU ProteinModelPortal:P31943 SMR:P31943 IntAct:P31943
MINT:MINT-1160934 STRING:P31943 PhosphoSite:P31943 DMDM:1710632
REPRODUCTION-2DPAGE:IPI00013881 REPRODUCTION-2DPAGE:P31943
PaxDb:P31943 PRIDE:P31943 Ensembl:ENST00000356731
Ensembl:ENST00000393432 Ensembl:ENST00000442819 GeneID:3187
KEGG:hsa:3187 UCSC:uc003mke.4 CTD:3187 GeneCards:GC05M179043
HGNC:HGNC:5041 HPA:HPA001359 HPA:HPA016884 MIM:601035
neXtProt:NX_P31943 PharmGKB:PA162391284 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 GenomeRNAi:3187 NextBio:12670 ArrayExpress:P31943
Bgee:P31943 CleanEx:HS_HNRNPH1 Genevestigator:P31943
GermOnline:ENSG00000169045 InterPro:IPR012996 Pfam:PF08080
Uniprot:P31943
Length = 449
Score = 265 (98.3 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 127 (49.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 109 (43.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>UNIPROTKB|F2Z5H9 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0071013 GeneTree:ENSGT00620000087736 CTD:3187
KO:K12898 InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:CU915704
RefSeq:XP_003123691.1 UniGene:Ssc.13767 ProteinModelPortal:F2Z5H9
SMR:F2Z5H9 PRIDE:F2Z5H9 Ensembl:ENSSSCT00000015317 GeneID:100519535
KEGG:ssc:100519535 Uniprot:F2Z5H9
Length = 449
Score = 265 (98.3 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 127 (49.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 109 (43.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>MGI|MGI:1891925 [details] [associations]
symbol:Hnrnph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891925 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 CTD:3187 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080 EMBL:Y14196
EMBL:BC056224 IPI:IPI00133916 RefSeq:NP_067485.1 UniGene:Mm.21740
ProteinModelPortal:O35737 SMR:O35737 IntAct:O35737 STRING:O35737
PhosphoSite:O35737 REPRODUCTION-2DPAGE:IPI00133916
REPRODUCTION-2DPAGE:O35737 PaxDb:O35737 PRIDE:O35737 DNASU:59013
Ensembl:ENSMUST00000069304 Ensembl:ENSMUST00000109142 GeneID:59013
KEGG:mmu:59013 NextBio:314564 Bgee:O35737 Genevestigator:O35737
GermOnline:ENSMUSG00000007850 Uniprot:O35737
Length = 449
Score = 265 (98.3 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 127 (49.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 109 (43.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>UNIPROTKB|G3V9Q3 [details] [associations]
symbol:Hnrph1 "Heterogeneous nuclear ribonucleoprotein H1,
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:CH473948
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
UniGene:Rn.23677 ProteinModelPortal:G3V9Q3 SMR:G3V9Q3 PRIDE:G3V9Q3
Ensembl:ENSRNOT00000059190 Uniprot:G3V9Q3
Length = 449
Score = 265 (98.3 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 127 (49.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 109 (43.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>UNIPROTKB|E1BF20 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:DAAA02018972
IPI:IPI00734138 Ensembl:ENSBTAT00000012357 Uniprot:E1BF20
Length = 472
Score = 265 (98.3 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 127 (49.8 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 109 (43.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 44 (20.5 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 79 GTSSKEANGRGTGGFGGVKS-TPYG 102
G +S++ +G GG+GG S + YG
Sbjct: 410 GPASQQLSGGYGGGYGGQSSMSGYG 434
>UNIPROTKB|G8JLB6 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 ProteinModelPortal:G8JLB6
SMR:G8JLB6 PRIDE:G8JLB6 Ensembl:ENST00000329433 OMA:FSECKIQ
PhylomeDB:G8JLB6 Bgee:G8JLB6 Uniprot:G8JLB6
Length = 472
Score = 265 (98.3 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 129 (50.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 127 (49.8 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 109 (43.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 44 (20.5 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 79 GTSSKEANGRGTGGFGGVKS-TPYG 102
G +S++ +G GG+GG S + YG
Sbjct: 410 GPASQQLSGGYGGGYGGQSSMSGYG 434
>UNIPROTKB|F1NBV8 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00589313
Ensembl:ENSGALT00000009575 ArrayExpress:F1NBV8 Uniprot:F1NBV8
Length = 492
Score = 265 (98.3 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 117 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 175
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 176 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 216
Score = 132 (51.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ T+
Sbjct: 331 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS-TAG 389
Query: 83 KEANGRGTGGFGGVKSTPYGV 103
G+ G + GV
Sbjct: 390 GTGGAYGSQMMGAMVKESEGV 410
Score = 129 (50.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 159 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 214
Score = 109 (43.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 313 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 370
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 371 DKANMQHRYVELFLN 385
Score = 88 (36.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 26/82 (31%), Positives = 38/82 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA E S +D + AL++ + MG RY+E++ K N T
Sbjct: 81 GRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 140
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 141 GFVRLRGLPFGCSKEEIVQFFS 162
Score = 38 (18.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G ++++ +G GG+GG S
Sbjct: 428 GPANQQLSGGYGGGYGGQSS 447
>UNIPROTKB|F1NJJ4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00684493
Ensembl:ENSGALT00000034274 ArrayExpress:F1NJJ4 Uniprot:F1NJJ4
Length = 499
Score = 265 (98.3 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 117 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 175
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 176 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 216
Score = 132 (51.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ T+
Sbjct: 338 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS-TAG 396
Query: 83 KEANGRGTGGFGGVKSTPYGV 103
G+ G + GV
Sbjct: 397 GTGGAYGSQMMGAMVKESEGV 417
Score = 129 (50.5 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 159 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 214
Score = 115 (45.5 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 40/135 (29%), Positives = 59/135 (43%)
Query: 85 ANGRGTGGFGGVKSTPYGVGIFCISQFLAKW-MRRAKRSEMDWALKRQGAVLSGSAVDQC 143
A G G GG+ G G F +F +W + A S+ + G S C
Sbjct: 265 AYGGGYGGYDDYNGYNDGYG-FGSDRFGREWTLFSAGMSDHRYG---DGTSTFQSTTGHC 320
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 321 -VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 377
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 378 DKANMQHRYVELFLN 392
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G ++++ +G GG+GG S
Sbjct: 435 GPANQQLSGGYGGGYGGQSS 454
>UNIPROTKB|F1NJJ5 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00679403
Ensembl:ENSGALT00000034273 ArrayExpress:F1NJJ5 Uniprot:F1NJJ5
Length = 519
Score = 265 (98.3 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 137 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 195
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 196 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 236
Score = 132 (51.5 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ T+
Sbjct: 358 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS-TAG 416
Query: 83 KEANGRGTGGFGGVKSTPYGV 103
G+ G + GV
Sbjct: 417 GTGGAYGSQMMGAMVKESEGV 437
Score = 129 (50.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 179 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 234
Score = 115 (45.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 40/135 (29%), Positives = 59/135 (43%)
Query: 85 ANGRGTGGFGGVKSTPYGVGIFCISQFLAKW-MRRAKRSEMDWALKRQGAVLSGSAVDQC 143
A G G GG+ G G F +F +W + A S+ + G S C
Sbjct: 285 AYGGGYGGYDDYNGYNDGYG-FGSDRFGREWTLFSAGMSDHRYG---DGTSTFQSTTGHC 340
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 341 -VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 397
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 398 DKANMQHRYVELFLN 412
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G ++++ +G GG+GG S
Sbjct: 455 GPANQQLSGGYGGGYGGQSS 474
>UNIPROTKB|F1NEG6 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AADN02028603
EMBL:AADN02028604 EMBL:AADN02028605 EMBL:AADN02028590
EMBL:AADN02028591 EMBL:AADN02028592 EMBL:AADN02028593
EMBL:AADN02028594 EMBL:AADN02028595 EMBL:AADN02028596
EMBL:AADN02028597 EMBL:AADN02028598 EMBL:AADN02028599
EMBL:AADN02028600 EMBL:AADN02028601 EMBL:AADN02028602
IPI:IPI00823306 Ensembl:ENSGALT00000040330 ArrayExpress:F1NEG6
Uniprot:F1NEG6
Length = 521
Score = 265 (98.3 bits), Expect = 3.0e-22, P = 3.0e-22
Identities = 51/101 (50%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 137 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 195
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 196 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 236
Score = 132 (51.5 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ T+
Sbjct: 360 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS-TAG 418
Query: 83 KEANGRGTGGFGGVKSTPYGV 103
G+ G + GV
Sbjct: 419 GTGGAYGSQMMGAMVKESEGV 439
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 179 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 234
Score = 109 (43.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 342 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 399
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 400 DKANMQHRYVELFLN 414
Score = 88 (36.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 26/82 (31%), Positives = 38/82 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA E S +D + AL++ + MG RY+E++ K N T
Sbjct: 101 GRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 160
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 161 GFVRLRGLPFGCSKEEIVQFFS 182
Score = 38 (18.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G ++++ +G GG+GG S
Sbjct: 457 GPANQQLSGGYGGGYGGQSS 476
>RGD|620840 [details] [associations]
symbol:Hnrph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:620840 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006396 GO:GO:0043484
eggNOG:NOG262593 HSSP:P55795 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 InterPro:IPR012996 Pfam:PF08080
EMBL:AF367468 EMBL:AABR03073723 EMBL:BC129087 IPI:IPI00202027
IPI:IPI00851133 IPI:IPI00851145 RefSeq:NP_543172.1 UniGene:Rn.23677
ProteinModelPortal:Q8VHV7 SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7
PhosphoSite:Q8VHV7 World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7
GeneID:140931 KEGG:rno:140931 UCSC:RGD:620840 CTD:140931
NextBio:620799 ArrayExpress:Q8VHV7 Genevestigator:Q8VHV7
Uniprot:Q8VHV7
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/101 (49%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C +E++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 133 (51.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + T GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 129 (50.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 104 (41.7 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSEEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>UNIPROTKB|Q8VHV7 [details] [associations]
symbol:Hnrnph1 "Heterogeneous nuclear ribonucleoprotein H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006396 GO:GO:0043484 eggNOG:NOG262593 HSSP:P55795
HOGENOM:HOG000220896 HOVERGEN:HBG055557 KO:K12898
InterPro:IPR012996 Pfam:PF08080 EMBL:AF367468 EMBL:AABR03073723
EMBL:BC129087 IPI:IPI00202027 IPI:IPI00851133 IPI:IPI00851145
RefSeq:NP_543172.1 UniGene:Rn.23677 ProteinModelPortal:Q8VHV7
SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7 PhosphoSite:Q8VHV7
World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7 GeneID:140931 KEGG:rno:140931
UCSC:RGD:620840 CTD:140931 NextBio:620799 ArrayExpress:Q8VHV7
Genevestigator:Q8VHV7 Uniprot:Q8VHV7
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/101 (49%), Positives = 69/101 (68%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C +E++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 133 (51.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + T GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 308 FFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 361
Score = 129 (50.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 104 (41.7 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPD--GRVTGEADVEFATHEDAVAAMSK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSEEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>UNIPROTKB|E2RJH5 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736 KO:K12898
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI
EMBL:AAEX03026717 RefSeq:XP_861916.1 RefSeq:XP_862053.2
Ensembl:ENSCAFT00000028063 GeneID:480989 KEGG:cfa:480989
Uniprot:E2RJH5
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNG+T+P D+ GR
Sbjct: 92 EMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGR 150
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 151 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 127 (49.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ GT
Sbjct: 308 FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 367
Query: 81 S 81
S
Sbjct: 368 S 368
Score = 126 (49.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP + L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 107 (42.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L + I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>MGI|MGI:1201779 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1201779
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:U58105 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:AK077716 EMBL:AK164115 EMBL:AK168116 EMBL:AK169104
EMBL:BC005461 IPI:IPI00108143 RefSeq:NP_063921.1 UniGene:Mm.315909
ProteinModelPortal:P70333 SMR:P70333 STRING:P70333
PhosphoSite:P70333 PaxDb:P70333 PRIDE:P70333 DNASU:56258
Ensembl:ENSMUST00000050331 Ensembl:ENSMUST00000059297
Ensembl:ENSMUST00000074950 Ensembl:ENSMUST00000113202
Ensembl:ENSMUST00000113203 GeneID:56258 KEGG:mmu:56258
InParanoid:P70333 NextBio:312148 Bgee:P70333 Genevestigator:P70333
GermOnline:ENSMUSG00000045427 Uniprot:P70333
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNG+T+P D+ GR
Sbjct: 92 EMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGR 150
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 151 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 127 (49.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ GT
Sbjct: 308 FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 367
Query: 81 S 81
S
Sbjct: 368 S 368
Score = 126 (49.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP + L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 107 (42.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L + I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>UNIPROTKB|P55795 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:U78027 EMBL:AL035422 GO:GO:0000398
EMBL:CH471115 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 HPA:HPA001359 HPA:HPA016884 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:U01923 EMBL:BC130343 EMBL:BC130345 IPI:IPI00026230
RefSeq:NP_001027565.1 RefSeq:NP_062543.1 UniGene:Hs.432485 PDB:1WEZ
PDB:1WG5 PDBsum:1WEZ PDBsum:1WG5 ProteinModelPortal:P55795
SMR:P55795 IntAct:P55795 MINT:MINT-2804293 STRING:P55795
PhosphoSite:P55795 DMDM:2500576 REPRODUCTION-2DPAGE:IPI00026230
PaxDb:P55795 PeptideAtlas:P55795 PRIDE:P55795 DNASU:3188
Ensembl:ENST00000316594 GeneID:3188 KEGG:hsa:3188 UCSC:uc004ehm.3
GeneCards:GC0XP100663 HGNC:HGNC:5042 HPA:CAB004436 MIM:300610
neXtProt:NX_P55795 PharmGKB:PA162391316 InParanoid:P55795
OMA:MEANMTI PhylomeDB:P55795 EvolutionaryTrace:P55795
GenomeRNAi:3188 NextBio:12674 ArrayExpress:P55795 Bgee:P55795
CleanEx:HS_HNRNPH2 Genevestigator:P55795 GermOnline:ENSG00000126945
Uniprot:P55795
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNG+T+P D+ GR
Sbjct: 92 EMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGR 150
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 151 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 127 (49.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ GT
Sbjct: 308 FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 367
Query: 81 S 81
S
Sbjct: 368 S 368
Score = 126 (49.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP + L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 107 (42.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L + I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 88 (36.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S ++ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 410 GPASQQLSGGYGGGYGGQSS 429
>UNIPROTKB|A5D9B4 [details] [associations]
symbol:HNRPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 IPI:IPI00696405 UniGene:Bt.8355 OMA:MEANMTI
EMBL:DAAA02070773 EMBL:DAAA02070774 EMBL:BT030533 SMR:A5D9B4
Ensembl:ENSBTAT00000009864 InParanoid:A5D9B4 Uniprot:A5D9B4
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNG+T+P D+ GR
Sbjct: 92 EMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGR 150
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 151 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ GT
Sbjct: 308 FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 367
Query: 81 S 81
S
Sbjct: 368 S 368
Score = 126 (49.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP + L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 107 (42.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L + I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
>UNIPROTKB|Q3SZF3 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC102894 IPI:IPI00696405 RefSeq:NP_001069476.1
UniGene:Bt.8355 ProteinModelPortal:Q3SZF3 SMR:Q3SZF3 PRIDE:Q3SZF3
GeneID:534001 KEGG:bta:534001 CTD:3188 InParanoid:Q3SZF3
NextBio:20876226 Uniprot:Q3SZF3
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNG+T+P D+ GR
Sbjct: 92 EMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGR 150
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 151 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ GT
Sbjct: 308 FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 367
Query: 81 S 81
S
Sbjct: 368 S 368
Score = 126 (49.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP + L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 107 (42.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L + I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
>RGD|1549784 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2 (H')"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1549784 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0015629
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593
HSSP:P55795 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI EMBL:BC079240
IPI:IPI00464512 RefSeq:NP_001014041.1 UniGene:Rn.229731
ProteinModelPortal:Q6AY09 SMR:Q6AY09 IntAct:Q6AY09 STRING:Q6AY09
PhosphoSite:Q6AY09 PRIDE:Q6AY09 Ensembl:ENSRNOT00000015518
GeneID:308650 KEGG:rno:308650 UCSC:RGD:1549784 InParanoid:Q6AY09
NextBio:659306 Genevestigator:Q6AY09 Uniprot:Q6AY09
Length = 449
Score = 261 (96.9 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNG+T+P D+ GR
Sbjct: 92 EMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGR 150
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 151 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 186
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ GT
Sbjct: 308 FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 367
Query: 81 S 81
S
Sbjct: 368 S 368
Score = 126 (49.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP + L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 129 QFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 107 (42.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L + I I D GR TG A ++F E+A A+ +
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 347
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 348 DKANMQHRYVELFLN 362
Score = 92 (37.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
>ZFIN|ZDB-GENE-040426-1856 [details] [associations]
symbol:hnrnph1 "heterogeneous nuclear
ribonucleoprotein H1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1856 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 CTD:3187 KO:K12898 InterPro:IPR012996
Pfam:PF08080 EMBL:CU855621 EMBL:CU658205 EMBL:BC065439
IPI:IPI00489200 RefSeq:NP_991247.1 UniGene:Dr.17640 SMR:Q6P0V0
Ensembl:ENSDART00000059918 GeneID:402984 KEGG:dre:402984
NextBio:20816791 Uniprot:Q6P0V0
Length = 403
Score = 257 (95.5 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 49/96 (51%), Positives = 66/96 (68%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G + D +RL+GLP+ C KE++ +F GLEIVPNGIT+P D+ GR
Sbjct: 88 EMDWVLKHTGPNCPETGGDGL-VRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGR 146
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF ++ AEKAL +HKE+IGHR + + S
Sbjct: 147 STGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKS 182
Score = 203 (76.5 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 67/205 (32%), Positives = 96/205 (46%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF IVP I L D GRS+GEA V+F+S D A++AL++HK +G RYIE++
Sbjct: 125 QFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSR 184
Query: 80 TSSKEANGRGTGGFGGVKSTPY---GVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLS 136
+ G + +PY G G S R +R R G S
Sbjct: 185 AEVRTHYEPQRKVMGMQRPSPYDRPGGGRGYNSMGRGVSFERMRRGGYGGD-GRYGD--S 241
Query: 137 GSAVDQC---CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVD 193
GS+ C+ ++GLPY + D+ F L V + I D GR TG A ++F
Sbjct: 242 GSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPVRVHLEIGPD--GRVTGEADVEFAT 299
Query: 194 KENAEKALLRHKEKIGHRLVTLVMS 218
E+A A+ + K + HR V L ++
Sbjct: 300 HEDAVAAMSKDKANMQHRYVELFLN 324
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV + L GR +GEADVEF++ +DA A+ + K+NM RY+EL++ T+
Sbjct: 270 FFSPLNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS-TA- 327
Query: 83 KEANGRGTGGFGG 95
G G+GG+GG
Sbjct: 328 ----GGGSGGYGG 336
Score = 131 (51.2 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYA--GRCTGVAYIQFVDKENAEKALL 202
+R++GLP+ C ++V++F +I NG +I Y GR +G A+++F +E+ + A+
Sbjct: 9 VRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAVK 68
Query: 203 RHKEKIGHRLVTLVMSGA---QWFL 224
+ +E +GHR V + S + W L
Sbjct: 69 KDRETMGHRYVEVFKSNSVEMDWVL 93
>RGD|1310019 [details] [associations]
symbol:Hnrnph3 "heterogeneous nuclear ribonucleoprotein H3
(2H9)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:1310019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 EMBL:CH473988
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OrthoDB:EOG49P9ZV
IPI:IPI00372854 RefSeq:NP_001102002.1 UniGene:Rn.60652 SMR:D4ABK7
Ensembl:ENSRNOT00000032600 GeneID:361838 KEGG:rno:361838
UCSC:RGD:1310019 NextBio:677788 Uniprot:D4ABK7
Length = 346
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 52/107 (48%), Positives = 68/107 (63%)
Query: 124 MDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC 183
MDW +K G A D +RL+GLP+ C KE++ +F +GLEIVPNGIT+ DY GR
Sbjct: 1 MDWVMKHNGP---NDASDGT-VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRS 56
Query: 184 TGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA---QWFLSPP 227
TG A++QF KE AE AL +HKE+IGHR + + S + F PP
Sbjct: 57 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPP 103
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ P+ + + GR++GEADVEF + +DA A+ + K+NM RYIEL++
Sbjct: 212 ANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 271
Query: 81 SSKEA-NGRGTGGFG 94
G G GG+G
Sbjct: 272 GGGSGMGGSGMGGYG 286
Score = 127 (49.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF+ IVP I L D GRS+GEA V+F+S + A+ AL +HK +G RYIE++
Sbjct: 34 QFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSR 93
Query: 80 TSSK 83
+ K
Sbjct: 94 SEIK 97
Score = 101 (40.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP+ + D+ F L + I I D GR TG A ++FV E+A A+ +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGAD--GRATGEADVEFVTHEDAVAAMSKD 254
Query: 205 KEKIGHRLVTLVMS 218
K + HR + L ++
Sbjct: 255 KNNMQHRYIELFLN 268
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 87 GRGTGGFGGVKSTPYGVG 104
GRG GG GG YG G
Sbjct: 322 GRGGGGSGGY----YGQG 335
>UNIPROTKB|E1BB17 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
EMBL:DAAA02061815 IPI:IPI00696173 ProteinModelPortal:E1BB17
SMR:E1BB17 PRIDE:E1BB17 Ensembl:ENSBTAT00000019039 Uniprot:E1BB17
Length = 346
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 52/107 (48%), Positives = 68/107 (63%)
Query: 124 MDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC 183
MDW +K G A D +RL+GLP+ C KE++ +F +GLEIVPNGIT+ DY GR
Sbjct: 1 MDWVMKHNGP---NDASDGT-VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRS 56
Query: 184 TGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA---QWFLSPP 227
TG A++QF KE AE AL +HKE+IGHR + + S + F PP
Sbjct: 57 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPP 103
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ P+ + + GR++GEADVEF + +DA A+ + K+NM RYIEL++
Sbjct: 212 ANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 271
Query: 81 SSKEA-NGRGTGGFG 94
G G GG+G
Sbjct: 272 GGGSGMGGSGMGGYG 286
Score = 127 (49.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF+ IVP I L D GRS+GEA V+F+S + A+ AL +HK +G RYIE++
Sbjct: 34 QFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSR 93
Query: 80 TSSK 83
+ K
Sbjct: 94 SEIK 97
Score = 101 (40.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP+ + D+ F L + I I D GR TG A ++FV E+A A+ +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGAD--GRATGEADVEFVTHEDAVAAMSKD 254
Query: 205 KEKIGHRLVTLVMS 218
K + HR + L ++
Sbjct: 255 KNNMQHRYIELFLN 268
>UNIPROTKB|F1P8D3 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
EMBL:AAEX03002774 RefSeq:XP_536369.2 ProteinModelPortal:F1P8D3
Ensembl:ENSCAFT00000000525 GeneID:479227 KEGG:cfa:479227
Uniprot:F1P8D3
Length = 346
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 52/107 (48%), Positives = 68/107 (63%)
Query: 124 MDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC 183
MDW +K G A D +RL+GLP+ C KE++ +F +GLEIVPNGIT+ DY GR
Sbjct: 1 MDWVMKHNGP---NDASDGT-VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRS 56
Query: 184 TGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA---QWFLSPP 227
TG A++QF KE AE AL +HKE+IGHR + + S + F PP
Sbjct: 57 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPP 103
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ P+ + + GR++GEADVEF + +DA A+ + K+NM RYIEL++
Sbjct: 212 ANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 271
Query: 81 SSKEA-NGRGTGGFG 94
G G GG+G
Sbjct: 272 GGGSGMGGSGMGGYG 286
Score = 127 (49.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF+ IVP I L D GRS+GEA V+F+S + A+ AL +HK +G RYIE++
Sbjct: 34 QFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSR 93
Query: 80 TSSK 83
+ K
Sbjct: 94 SEIK 97
Score = 101 (40.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP+ + D+ F L + I I D GR TG A ++FV E+A A+ +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGAD--GRATGEADVEFVTHEDAVAAMSKD 254
Query: 205 KEKIGHRLVTLVMS 218
K + HR + L ++
Sbjct: 255 KNNMQHRYIELFLN 268
>UNIPROTKB|P31942 [details] [associations]
symbol:HNRNPH3 "Heterogeneous nuclear ribonucleoprotein H3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG262593 HOVERGEN:HBG055557 KO:K12898 EMBL:L32610
EMBL:AF132360 EMBL:AF132361 EMBL:AF132362 EMBL:AF132363
EMBL:AF132364 EMBL:AK091411 EMBL:AK291547 EMBL:AL117395
EMBL:BC004511 EMBL:BC039824 IPI:IPI00013877 IPI:IPI00216492
IPI:IPI00216493 IPI:IPI00216494 IPI:IPI00216495 IPI:IPI00216496
PIR:T17207 RefSeq:NP_036339.1 RefSeq:NP_067676.2 UniGene:Hs.643472
ProteinModelPortal:P31942 SMR:P31942 IntAct:P31942
MINT:MINT-5004191 STRING:P31942 PhosphoSite:P31942 DMDM:23503095
PaxDb:P31942 PRIDE:P31942 Ensembl:ENST00000265866
Ensembl:ENST00000354695 GeneID:3189 KEGG:hsa:3189 UCSC:uc001jnw.4
UCSC:uc001jnx.4 CTD:3189 GeneCards:GC10P070090 HGNC:HGNC:5043
HPA:HPA038264 MIM:602324 neXtProt:NX_P31942 PharmGKB:PA162391325
InParanoid:P31942 OMA:PYDRPLG OrthoDB:EOG49P9ZV PhylomeDB:P31942
ChiTaRS:HNRNPH3 GenomeRNAi:3189 NextBio:12680 ArrayExpress:P31942
Bgee:P31942 CleanEx:HS_HNRNPH3 Genevestigator:P31942
GermOnline:ENSG00000096746 Uniprot:P31942
Length = 346
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 52/107 (48%), Positives = 68/107 (63%)
Query: 124 MDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC 183
MDW +K G A D +RL+GLP+ C KE++ +F +GLEIVPNGIT+ DY GR
Sbjct: 1 MDWVMKHNGP---NDASDGT-VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRS 56
Query: 184 TGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA---QWFLSPP 227
TG A++QF KE AE AL +HKE+IGHR + + S + F PP
Sbjct: 57 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPP 103
Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ P+ + + GR++GEADVEF + +DA A+ + K+NM RYIEL++
Sbjct: 212 ANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 271
Query: 81 SSKEA-NGRGTGGFG 94
G G GG+G
Sbjct: 272 GGGSGMGGSGMGGYG 286
Score = 127 (49.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF+ IVP I L D GRS+GEA V+F+S + A+ AL +HK +G RYIE++
Sbjct: 34 QFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSR 93
Query: 80 TSSK 83
+ K
Sbjct: 94 SEIK 97
Score = 101 (40.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP+ + D+ F L + I I D GR TG A ++FV E+A A+ +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGAD--GRATGEADVEFVTHEDAVAAMSKD 254
Query: 205 KEKIGHRLVTLVMS 218
K + HR + L ++
Sbjct: 255 KNNMQHRYIELFLN 268
>UNIPROTKB|I3LFQ0 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 EMBL:FP476068
Ensembl:ENSSSCT00000027886 OMA:NDIANXH Uniprot:I3LFQ0
Length = 216
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 52/107 (48%), Positives = 68/107 (63%)
Query: 124 MDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC 183
MDW +K G A D +RL+GLP+ C KE++ +F +GLEIVPNGIT+ DY GR
Sbjct: 1 MDWVMKHNGP---NDASDGT-VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRS 56
Query: 184 TGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSGA---QWFLSPP 227
TG A++QF KE AE AL +HKE+IGHR + + S + F PP
Sbjct: 57 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPP 103
Score = 127 (49.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF+ IVP I L D GRS+GEA V+F+S + A+ AL +HK +G RYIE++
Sbjct: 34 QFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSR 93
Query: 80 TSSK 83
+ K
Sbjct: 94 SEIK 97
>UNIPROTKB|Q5F3D2 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:AADN02028014 EMBL:AJ851718 IPI:IPI00573787
RefSeq:NP_001012610.1 UniGene:Gga.22904 SMR:Q5F3D2
Ensembl:ENSGALT00000006294 GeneID:423686 KEGG:gga:423686
InParanoid:Q5F3D2 NextBio:20826120 Uniprot:Q5F3D2
Length = 342
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 48/95 (50%), Positives = 64/95 (67%)
Query: 124 MDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC 183
MDW K G + + D +RL+GLP+ C KE++ +F +GLEIVPNGIT+ DY GR
Sbjct: 1 MDWTGKHNGP--TDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRS 58
Query: 184 TGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
TG A++QF KE AE AL +HKE+IGHR + + S
Sbjct: 59 TGEAFVQFASKEIAENALGKHKERIGHRYIEIFKS 93
Score = 140 (54.3 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ P+ + + GR++GEADVEF + +DA A+ + K++M RYIEL++
Sbjct: 215 ANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQHRYIELFL---- 270
Query: 81 SSKEANGRGTGGFG 94
+S G G GG+G
Sbjct: 271 NSTAGGGSGMGGYG 284
Score = 127 (49.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEG 79
QFF+ IVP I L D GRS+GEA V+F+S + A+ AL +HK +G RYIE++
Sbjct: 36 QFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFK--- 92
Query: 80 TSSKEANG 87
+S E G
Sbjct: 93 SSKSEIRG 100
Score = 100 (40.3 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP+ + D+ F L + I I D GR TG A ++FV E+A A+ +
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGAD--GRATGEADVEFVTHEDAVAAMSKD 257
Query: 205 KEKIGHRLVTLVMS 218
K + HR + L ++
Sbjct: 258 KNHMQHRYIELFLN 271
>UNIPROTKB|E5RGH4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00982782
ProteinModelPortal:E5RGH4 SMR:E5RGH4 Ensembl:ENST00000521790
ArrayExpress:E5RGH4 Bgee:E5RGH4 Uniprot:E5RGH4
Length = 100
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 48/92 (52%), Positives = 64/92 (69%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 10 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 68
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIG 209
D+ GR TG A++QF +E AEKAL +HKE+IG
Sbjct: 69 DFQGRSTGEAFVQFASQEIAEKALKKHKERIG 100
Score = 104 (41.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMG 68
QFF IVP I L D GRS+GEA V+F+S + A++AL++HK +G
Sbjct: 52 QFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIG 100
>UNIPROTKB|I3L5T6 [details] [associations]
symbol:I3L5T6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU633293
Ensembl:ENSSSCT00000028833 Uniprot:I3L5T6
Length = 413
Score = 210 (79.0 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 48/114 (42%), Positives = 67/114 (58%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ R+EMDW LK + +A D LQGL + C KE + +F GLEI+P IT+P
Sbjct: 86 KSHRTEMDWMLKHSCPKSADNANDGFVW-LQGLLFGCTKEKIIQFFSGLEIMPIWITLPM 144
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMSG---AQWFLSPPL 228
D G+ TG A++QF +E AEKAL KE+IGHR + + S + + PPL
Sbjct: 145 DLEGKITGEAFVQFTSQELAEKALGDRKERIGHRYIEVFKSSWEEVRSYSDPPL 198
Score = 71 (30.1 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 41 RSSGEAD--VEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
R G+ D VE S DD + AL++ + +MG +Y E++ T
Sbjct: 49 REGGQNDIFVELGSEDDVKMALKKERGSMGHQYTEVFKSHRT 90
>UNIPROTKB|F5H5I6 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
IPI:IPI00979483 ProteinModelPortal:F5H5I6 SMR:F5H5I6 PRIDE:F5H5I6
Ensembl:ENST00000545193 UCSC:uc011caz.1 ArrayExpress:F5H5I6
Bgee:F5H5I6 Uniprot:F5H5I6
Length = 362
Score = 180 (68.4 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 116 ALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 173
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 174 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 206
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 54/208 (25%), Positives = 95/208 (45%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM----E 77
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++ E
Sbjct: 151 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 210
Query: 78 EGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWM-RRAKRSEMDWALKRQ----- 131
T G+ F K +F + A SE + L ++
Sbjct: 211 VRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKL 270
Query: 132 -GAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
A G+ + ++GLP++ +D+ F L+ P IT+ + +G+ TG A +
Sbjct: 271 PEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVH 328
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMS 218
F E+A A+L+ + + HR + L ++
Sbjct: 329 FETHEDAVAAMLKDRSHVHHRYIELFLN 356
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 302 FFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 361
Query: 83 K 83
K
Sbjct: 362 K 362
Score = 98 (39.6 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 67 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 107
>UNIPROTKB|A6QPB2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 OrthoDB:EOG4XPQGW GeneTree:ENSGT00620000087736
EMBL:DAAA02018025 EMBL:DAAA02018026 EMBL:BC149233 IPI:IPI00705255
UniGene:Bt.53639 SMR:A6QPB2 Ensembl:ENSBTAT00000039551
Uniprot:A6QPB2
Length = 362
Score = 178 (67.7 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 116 ALMKSLHVKSAPMVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 173
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 174 EAYVQFEEPEMASQALLKHREEIGNRYIEIFPS 206
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 302 FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 361
Query: 83 K 83
K
Sbjct: 362 K 362
Score = 104 (41.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP++ +D+ F L+ P IT+ + +G+ TG A + F E+A A+L+
Sbjct: 285 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 342
Query: 205 KEKIGHRLVTLVMS 218
+ + HR + L ++
Sbjct: 343 RSHVHHRYIELFLN 356
Score = 98 (39.6 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 67 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 107
Score = 96 (38.9 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++
Sbjct: 151 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIF 204
>UNIPROTKB|H0Y8R1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
PRIDE:H0Y8R1 Ensembl:ENST00000514161 Bgee:H0Y8R1 Uniprot:H0Y8R1
Length = 417
Score = 180 (68.4 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 171 ALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 228
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 229 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 261
Score = 154 (59.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 54/208 (25%), Positives = 95/208 (45%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM----E 77
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++ E
Sbjct: 206 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 265
Query: 78 EGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWM-RRAKRSEMDWALKRQ----- 131
T G+ F K +F + A SE + L ++
Sbjct: 266 VRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKL 325
Query: 132 -GAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
A G+ + ++GLP++ +D+ F L+ P IT+ + +G+ TG A +
Sbjct: 326 PEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVH 383
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMS 218
F E+A A+L+ + + HR + L ++
Sbjct: 384 FETHEDAVAAMLKDRSHVHHRYIELFLN 411
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 357 FFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 416
Query: 83 K 83
K
Sbjct: 417 K 417
Score = 98 (39.6 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 122 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 162
>UNIPROTKB|F1MZF0 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:DAAA02018025 EMBL:DAAA02018026 IPI:IPI00700446
Ensembl:ENSBTAT00000011313 ArrayExpress:F1MZF0 Uniprot:F1MZF0
Length = 399
Score = 178 (67.7 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 153 ALMKSLHVKSAPMVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 210
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 211 EAYVQFEEPEMASQALLKHREEIGNRYIEIFPS 243
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 339 FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 398
Query: 83 K 83
K
Sbjct: 399 K 399
Score = 104 (41.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP++ +D+ F L+ P IT+ + +G+ TG A + F E+A A+L+
Sbjct: 322 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 379
Query: 205 KEKIGHRLVTLVMS 218
+ + HR + L ++
Sbjct: 380 RSHVHHRYIELFLN 393
Score = 98 (39.6 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 104 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 144
Score = 96 (38.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++
Sbjct: 188 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIF 241
>UNIPROTKB|H0YAK1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
OMA:LSFFSDC PRIDE:H0YAK1 Ensembl:ENST00000499044 Bgee:H0YAK1
Uniprot:H0YAK1
Length = 453
Score = 180 (68.4 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 207 ALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 264
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 265 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 297
Score = 154 (59.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 54/208 (25%), Positives = 95/208 (45%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM----E 77
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++ E
Sbjct: 242 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 301
Query: 78 EGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWM-RRAKRSEMDWALKRQ----- 131
T G+ F K +F + A SE + L ++
Sbjct: 302 VRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKL 361
Query: 132 -GAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
A G+ + ++GLP++ +D+ F L+ P IT+ + +G+ TG A +
Sbjct: 362 PEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVH 419
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMS 218
F E+A A+L+ + + HR + L ++
Sbjct: 420 FETHEDAVAAMLKDRSHVHHRYIELFLN 447
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 393 FFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 452
Query: 83 K 83
K
Sbjct: 453 K 453
Score = 98 (39.6 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 158 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 198
>UNIPROTKB|Q12849 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 EMBL:CH471057
GO:GO:0016331 EMBL:U07231 EMBL:AK056891 EMBL:AK090755 EMBL:AK094806
EMBL:AK095799 EMBL:AK097055 EMBL:AK127161 EMBL:AC021989
EMBL:BC040485 IPI:IPI00478657 IPI:IPI00914953 PIR:S48081
RefSeq:NP_001091947.1 RefSeq:NP_002083.3 UniGene:Hs.309763 PDB:2LMI
PDBsum:2LMI ProteinModelPortal:Q12849 SMR:Q12849 IntAct:Q12849
STRING:Q12849 PhosphoSite:Q12849 DMDM:215274142 PaxDb:Q12849
PRIDE:Q12849 Ensembl:ENST00000254799 Ensembl:ENST00000439371
Ensembl:ENST00000502323 GeneID:2926 KEGG:hsa:2926 UCSC:uc003hfs.2
CTD:2926 GeneCards:GC04M071681 HGNC:HGNC:4610 HPA:HPA036985
MIM:604851 neXtProt:NX_Q12849 PharmGKB:PA29003 eggNOG:NOG319259
HOGENOM:HOG000220896 HOVERGEN:HBG055557 InParanoid:Q12849
OrthoDB:EOG4XPQGW ChiTaRS:GRSF1 GenomeRNAi:2926 NextBio:11601
ArrayExpress:Q12849 Bgee:Q12849 CleanEx:HS_GRSF1
Genevestigator:Q12849 GermOnline:ENSG00000132463 Uniprot:Q12849
Length = 480
Score = 180 (68.4 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 234 ALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 291
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 292 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 324
Score = 154 (59.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 54/208 (25%), Positives = 95/208 (45%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM----E 77
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++ E
Sbjct: 269 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 328
Query: 78 EGTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWM-RRAKRSEMDWALKRQ----- 131
T G+ F K +F + A SE + L ++
Sbjct: 329 VRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKL 388
Query: 132 -GAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
A G+ + ++GLP++ +D+ F L+ P IT+ + +G+ TG A +
Sbjct: 389 PEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVH 446
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMS 218
F E+A A+L+ + + HR + L ++
Sbjct: 447 FETHEDAVAAMLKDRSHVHHRYIELFLN 474
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 420 FFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 479
Query: 83 K 83
K
Sbjct: 480 K 480
Score = 98 (39.6 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 185 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 225
>UNIPROTKB|E1BMP6 [details] [associations]
symbol:E1BMP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:DAAA02072842 IPI:IPI00699769 ProteinModelPortal:E1BMP6
Ensembl:ENSBTAT00000027332 Uniprot:E1BMP6
Length = 415
Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 50/115 (43%), Positives = 74/115 (64%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ R+EM+ LK G SG + +RL+GLP+ C ED+ +F GLEI+PN IT+P
Sbjct: 89 KSHRTEMELVLKHSGPN-SGDSSSDGFVRLRGLPFGCT-EDIIQFFSGLEIMPNRITLPV 146
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKI-GHRLVTLVMS---GAQWFLSPPL 228
D G+ TG A++QF +E AEKAL ++K++I GHR + + S G + +L PPL
Sbjct: 147 DPEGKTTGEAFVQFASQELAEKALGKNKKRIIGHRYIEVFNSSQEGVRSYLDPPL 201
Score = 105 (42.0 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNM-GDRYIELY--M 76
QFF I+P I L D G+++GEA V+F+S + A++AL ++K + G RYIE++
Sbjct: 130 QFFSGLEIMPNRITLPVDPEGKTTGEAFVQFASQELAEKALGKNKKRIIGHRYIEVFNSS 189
Query: 77 EEGTSS 82
+EG S
Sbjct: 190 QEGVRS 195
Score = 91 (37.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 36/150 (24%), Positives = 63/150 (42%)
Query: 70 RYIELYMEEGTSSKEANGRGTGGFGGVKS-TPYGVGIFCISQFLAKWMRRAKRSEMDWAL 128
RY + + G + +G + G+GG + + G G + + + D
Sbjct: 220 RYTGIIKQAGLE-RMRSGAYSAGYGGHEEYSSLGDGYGFTTDLFGRDLSYCLSEIYDHRY 278
Query: 129 KRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAY 188
R G S C + ++GLPY+ + D+ F L V I I D GR T A
Sbjct: 279 -RDGEFTVQSTTGHC-VHMRGLPYKATENDIYNF-SLLNPVRVHIEIGPD--GRVTSEAD 333
Query: 189 IQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
++F E A A+ +++ + HR + L ++
Sbjct: 334 VEFATHEEAMVAMSKNRANMQHRYIELFLN 363
>UNIPROTKB|F1LRK4 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 GeneTree:ENSGT00620000087736
IPI:IPI00364208 PRIDE:F1LRK4 Ensembl:ENSRNOT00000004551
ArrayExpress:F1LRK4 Uniprot:F1LRK4
Length = 361
Score = 173 (66.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V A+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 115 ALMKSLQVKPTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 172
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 173 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 205
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 301 FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKG 360
Query: 83 K 83
K
Sbjct: 361 K 361
Score = 104 (41.7 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP++ +D+ F L+ P IT+ + +G+ TG A + F E+A A+L+
Sbjct: 284 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 341
Query: 205 KEKIGHRLVTLVMS 218
+ + HR + L ++
Sbjct: 342 RSHVQHRYIELFLN 355
Score = 98 (39.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 66 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 106
Score = 96 (38.9 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++
Sbjct: 150 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 203
>UNIPROTKB|D6RIU0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967216
ProteinModelPortal:D6RIU0 SMR:D6RIU0 Ensembl:ENST00000504348
ArrayExpress:D6RIU0 Bgee:D6RIU0 Uniprot:D6RIU0
Length = 168
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 42/83 (50%), Positives = 56/83 (67%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKENAEKA 200
D+ GR TG A++QF +E AEKA
Sbjct: 146 DFQGRSTGEAFVQFASQEIAEKA 168
Score = 106 (42.4 bits), Expect = 0.00047, P = 0.00047
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
>UNIPROTKB|F1RUP2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:FP325194 RefSeq:XP_003129120.1 UniGene:Ssc.12808
Ensembl:ENSSSCT00000009793 GeneID:100516986 KEGG:ssc:100516986
Uniprot:F1RUP2
Length = 479
Score = 177 (67.4 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 233 ALMKNLHVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVD--ITFVMDYRGRRKTG 290
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 291 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 323
Score = 151 (58.2 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 55/210 (26%), Positives = 100/210 (47%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++
Sbjct: 268 FFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 327
Query: 82 SKEANGRGTGGFGGVKSTPYGVGI----FCISQF-LAKWMR--RAKRSEMDWALKRQ--- 131
+ G G + S+P I + + + +R A SE + L ++
Sbjct: 328 VRTHVGSHKGK--KMASSPTAKYITEPEMAFEENEVNEDVRPMTAFESEKEIELPKEMSE 385
Query: 132 ---GAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAY 188
AV G+ + ++GLP++ +D+ F L+ P IT+ + +G+ TG A
Sbjct: 386 KLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEAD 443
Query: 189 IQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
+ F E+A A+L+ + + HR + L ++
Sbjct: 444 VHFETHEDAVAAMLKDRSHVHHRYIELFLN 473
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 419 FFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 478
Query: 83 K 83
K
Sbjct: 479 K 479
Score = 98 (39.6 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 184 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 224
>UNIPROTKB|F1LMB8 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 OMA:LSFFSDC IPI:IPI00949228
PRIDE:F1LMB8 Ensembl:ENSRNOT00000065436 ArrayExpress:F1LMB8
Uniprot:F1LMB8
Length = 479
Score = 173 (66.0 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V A+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 233 ALMKSLQVKPTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 290
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 291 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 323
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 419 FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKG 478
Query: 83 K 83
K
Sbjct: 479 K 479
Score = 104 (41.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP++ +D+ F L+ P IT+ + +G+ TG A + F E+A A+L+
Sbjct: 402 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 459
Query: 205 KEKIGHRLVTLVMS 218
+ + HR + L ++
Sbjct: 460 RSHVQHRYIELFLN 473
Score = 98 (39.6 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 184 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 224
Score = 96 (38.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++
Sbjct: 268 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 321
>UNIPROTKB|F1Q0B7 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016331 "morphogenesis of embryonic
epithelium" evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 EMBL:AAEX03009136
Ensembl:ENSCAFT00000004672 OMA:GESEMAN Uniprot:F1Q0B7
Length = 281
Score = 180 (68.4 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V S V+ +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 35 ALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 92
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 93 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 125
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 221 FFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNSCPKG 280
Query: 83 K 83
K
Sbjct: 281 K 281
Score = 101 (40.6 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP++ +D+ F L+ P IT+ + G+ TG A + F E+A A+L+
Sbjct: 204 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKD 261
Query: 205 KEKIGHRLVTLVMS 218
+ + HR + L ++
Sbjct: 262 RSHVHHRYIELFLN 275
Score = 96 (38.9 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++
Sbjct: 70 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 123
Score = 73 (30.8 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 52 SVDDAQRALQRHKSNMGDRYIELY 75
S D Q+AL++H+ MG RY+E+Y
Sbjct: 3 SEQDVQKALEKHRMYMGQRYVEVY 26
>MGI|MGI:106479 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106479 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016331 CTD:2926
eggNOG:NOG319259 HOGENOM:HOG000220896 HOVERGEN:HBG055557
OrthoDB:EOG4XPQGW EMBL:AK044889 EMBL:AK045986 EMBL:AK077782
IPI:IPI00453582 RefSeq:NP_848815.2 UniGene:Mm.332474
ProteinModelPortal:Q8C5Q4 SMR:Q8C5Q4 STRING:Q8C5Q4
PhosphoSite:Q8C5Q4 PaxDb:Q8C5Q4 PRIDE:Q8C5Q4 DNASU:231413
Ensembl:ENSMUST00000078945 GeneID:231413 KEGG:mmu:231413
UCSC:uc008yab.1 GeneTree:ENSGT00620000087736 InParanoid:Q8C5Q4
OMA:LSFFSDC NextBio:380544 Bgee:Q8C5Q4 CleanEx:MM_GRSF1
Genevestigator:Q8C5Q4 GermOnline:ENSMUSG00000044221 Uniprot:Q8C5Q4
Length = 479
Score = 171 (65.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC-TG 185
AL + V + +RL+GLPY C ++D+ F GL IV IT DY GR TG
Sbjct: 233 ALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTG 290
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
AY+QF + E A +ALL+H+E+IG+R + + S
Sbjct: 291 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 323
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 419 FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKG 478
Query: 83 K 83
K
Sbjct: 479 K 479
Score = 104 (41.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP++ +D+ F L+ P IT+ + +G+ TG A + F E+A A+L+
Sbjct: 402 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 459
Query: 205 KEKIGHRLVTLVMS 218
+ + HR + L ++
Sbjct: 460 RSHVQHRYIELFLN 473
Score = 98 (39.6 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D G+ G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 184 LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 224
Score = 96 (38.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 23 FFKPIVPVNILLLTDDAGR-SSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FF + V+I + D GR +GEA V+F + A +AL +H+ +G+RYIE++
Sbjct: 268 FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 321
>UNIPROTKB|G3N1Y9 [details] [associations]
symbol:G3N1Y9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02057210 Ensembl:ENSBTAT00000065958 Uniprot:G3N1Y9
Length = 426
Score = 214 (80.4 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 44/101 (43%), Positives = 63/101 (62%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ ++MDW L+ G +A D +RL GLP+ C KE++ +F GLEIVPNGIT+
Sbjct: 85 KSNNADMDWVLEHTGPHSPDTASDGF-VRLSGLPFGCSKEEMVQFFAGLEIVPNGITLQV 143
Query: 178 DYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
D R TG A++ F +E AE AL +HKE+IG R + + S
Sbjct: 144 DMQRRSTGEAFVWFASQEIAEMALKKHKERIGRRYMGIFKS 184
Score = 102 (41.0 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF IVP I L D RS+GEA V F+S + A+ AL++HK +G RY+ ++
Sbjct: 127 QFFAGLEIVPNGITLQVDMQRRSTGEAFVWFASQEIAEMALKKHKERIGRRYMGIF 182
Score = 52 (23.4 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 34/143 (23%), Positives = 55/143 (38%)
Query: 79 GTSSKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGS 138
G + + A G G GG+ G G F +F + ++ A+ W Q +G
Sbjct: 226 GRTRRGAYGGGYGGYDHYNGYNDGYG-FGSGRF-GRDLKNARSQTRGWGTVEQDT--TGH 281
Query: 139 AVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYA-GRCTGVAYIQFVDKENA 197
+ + G P+ EK L N + + + GR TG A ++F E+A
Sbjct: 282 SA-----HMWGPPHRAP----EKSFSPL----NPVRVHTETGNGRVTGEADVEFATHEDA 328
Query: 198 EKALLRHKEKIGHRLVTLVMSGA 220
A + K + H + L S A
Sbjct: 329 VAATSKDKANM-HHMYELFDSAA 350
>UNIPROTKB|D6RFM3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
HOGENOM:HOG000134241 IPI:IPI00965435 ProteinModelPortal:D6RFM3
SMR:D6RFM3 Ensembl:ENST00000513225 ArrayExpress:D6RFM3 Bgee:D6RFM3
Uniprot:D6RFM3
Length = 163
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 38/78 (48%), Positives = 52/78 (66%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPH 177
++ EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNGIT+P
Sbjct: 87 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPV 145
Query: 178 DYAGRCTGVAYIQFVDKE 195
D+ GR TG A++QF +E
Sbjct: 146 DFQGRSTGEAFVQFASQE 163
Score = 106 (42.4 bits), Expect = 0.00037, P = 0.00037
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
>UNIPROTKB|E7EN40 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00981333
ProteinModelPortal:E7EN40 SMR:E7EN40 Ensembl:ENST00000523137
ArrayExpress:E7EN40 Bgee:E7EN40 Uniprot:E7EN40
Length = 166
Score = 189 (71.6 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 161 KFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
+++EGLEIVPNGIT+P D+ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 81 RYVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 138
Score = 124 (48.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 27 IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
IVP I L D GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 88 IVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 136
Score = 104 (41.7 bits), Expect = 0.00081, P = 0.00081
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLV 213
+ +E +GHR V
Sbjct: 73 KDRETMGHRYV 83
>FB|FBgn0259139 [details] [associations]
symbol:glo "glorund" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006417
"regulation of translation" evidence=IMP;NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046427 "positive regulation of JAK-STAT cascade"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0043234
"protein complex" evidence=IPI] [GO:0060810 "intracellular mRNA
localization involved in pattern specification process"
evidence=IMP] [GO:0007311 "maternal specification of dorsal/ventral
axis, oocyte, germ-line encoded" evidence=IMP] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0043234 GO:GO:0006417 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0042060 GO:GO:0046427
GO:GO:0051276 GO:GO:0045451 GO:GO:0007311
GeneTree:ENSGT00620000087828 KO:K12898 FlyBase:FBgn0259139
UniGene:Dm.4997 GeneID:41431 KEGG:dme:Dmel_CG6946 CTD:41431
GenomeRNAi:41431 NextBio:823816 EMBL:AY089465 RefSeq:NP_650120.1
RefSeq:NP_731639.1 SMR:Q9VGH5 IntAct:Q9VGH5 MINT:MINT-293245
STRING:Q9VGH5 EnsemblMetazoa:FBtr0089917 EnsemblMetazoa:FBtr0089919
UCSC:CG6946-RA InParanoid:Q9VGH5 OMA:NFGPIGG Uniprot:Q9VGH5
Length = 586
Score = 157 (60.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPN--GITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++L+GLPY ++ +E+F GL+I + GI D GR TG A++QF +++ E+AL
Sbjct: 148 VKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALG 207
Query: 203 RHKEKIGHRLVTLVMS 218
R++EKIGHR + + S
Sbjct: 208 RNREKIGHRYIEIFRS 223
Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT- 80
+FF+PI P N+ + + G SG AD F + +D+Q A++RH+ MG RYIEL+ + T
Sbjct: 499 KFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMGSRYIELFYDGKTR 558
Query: 81 ---SSKEANGRGTGGFG 94
+ G G GG G
Sbjct: 559 GLNGGEHGGGNGGGGMG 575
Score = 145 (56.1 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTG 91
IL + D GR++GEA V+F S DD ++AL R++ +G RYIE++ K A G G G
Sbjct: 178 ILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRATGAG-G 236
Query: 92 GFGGVKSTPYGV 103
G GG + PY +
Sbjct: 237 GVGG-RPGPYDI 247
Score = 119 (46.9 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 33/107 (30%), Positives = 57/107 (53%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEA----NGRGTGGFGG 95
G+++GEA VE +S +D + A + +K++MG RYIE++ +KEA +G GT
Sbjct: 90 GKNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAFVVK 149
Query: 96 VKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQ 142
++ PY V I +F + + R + + + R+G +G A Q
Sbjct: 150 LRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRA-TGEAFVQ 195
Score = 110 (43.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 137 GSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKEN 196
G+ ++ + ++GLPY + DV KF E + P + I ++ G +G A F E+
Sbjct: 475 GNDIEYYTIHMRGLPYTSFENDVFKFFEPIR--PANVRINYNKKGLHSGTADAYFDTYED 532
Query: 197 AEKALLRHKEKIGHRLVTLVMSG 219
++ A+ RH+E++G R + L G
Sbjct: 533 SQVAMKRHREQMGSRYIELFYDG 555
>ZFIN|ZDB-GENE-060825-196 [details] [associations]
symbol:grsf1 "G-rich RNA sequence binding factor 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060825-196 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BX323596 GeneTree:ENSGT00620000087736
IPI:IPI01023901 ProteinModelPortal:F8W4V6
Ensembl:ENSDART00000149868 ArrayExpress:F8W4V6 Bgee:F8W4V6
Uniprot:F8W4V6
Length = 403
Score = 157 (60.3 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 28/71 (39%), Positives = 49/71 (69%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+RL+GLPY C + D+ +F GL++V +G+TI + G+ +G A+++F K AEKAL +
Sbjct: 214 VRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKKD 273
Query: 205 KEKIGHRLVTL 215
+E +G+R + +
Sbjct: 274 REILGNRYIEI 284
Score = 94 (38.1 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 19/56 (33%), Positives = 38/56 (67%)
Query: 22 QFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
+FF +V + ++ + G+SSG+A VEF++ A++AL++ + +G+RYIE++
Sbjct: 230 RFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKKDREILGNRYIEIF 285
Score = 89 (36.4 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 135 LSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDK 194
L + V + + ++GLP++ K ED+ KF + ++ + + G+ TG A F
Sbjct: 314 LRNTTVTKNVIHMRGLPFDAKAEDIVKFFAPVRLMK--VVVEFGPEGKPTGEAEAYFKTH 371
Query: 195 ENAEKALLRHKEKIGHRLVTLVMS 218
E+A A+ + +E I R + L ++
Sbjct: 372 EDAVLAMSKDREFIMERYIELYLN 395
Score = 76 (31.8 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 30 VN-ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
VN + +L + G+ SG+A +E +D +AL +H+ + DR+IE+
Sbjct: 144 VNGVHILYNKYGKPSGQAFIELEHEEDVGKALDQHRHYLRDRFIEV 189
>WB|WBGene00006367 [details] [associations]
symbol:sym-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0010172 "embryonic body morphogenesis"
evidence=IGI] [GO:0050879 "multicellular organismal movement"
evidence=IGI] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GO:GO:0010172 eggNOG:NOG262593 GeneTree:ENSGT00620000087828
KO:K14947 HSSP:P55795 EMBL:Z68319 EMBL:Z70038 EMBL:AY220985
PIR:T25208 RefSeq:NP_495960.2 UniGene:Cel.5905
ProteinModelPortal:Q22708 SMR:Q22708 IntAct:Q22708 STRING:Q22708
PaxDb:Q22708 EnsemblMetazoa:ZK1067.6 GeneID:174461
KEGG:cel:CELE_ZK1067.6 UCSC:ZK1067.6 CTD:174461 WormBase:ZK1067.6
HOGENOM:HOG000154473 InParanoid:Q22708 OMA:VENVMFT NextBio:884134
GO:GO:0050879 Uniprot:Q22708
Length = 618
Score = 137 (53.3 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+R++GLPY+C + F E L++ + I GR TG A++QF +E+A++ LL+H
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRT-DGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 205 KEKIGHRLVTLVMSGA 220
++ IG R + L S A
Sbjct: 342 RQVIGQRYIELFKSTA 357
Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 137 GSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKEN 196
G+ D R +GLP++ V +F GL+IVP GI + GR G +QF +E+
Sbjct: 175 GADGDNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQES 234
Query: 197 AEKALLRHKEKIGHRLVTLVMSGAQWFL 224
+ AL RH+ + R + + +G F+
Sbjct: 235 RDLALKRHRNFLLSRYIEVYKAGLDEFM 262
Score = 115 (45.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 23 FFKPI-VPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FF+P+ + IL +T GR +G+A V+F + +DAQ+ L +H+ +G RYIEL+
Sbjct: 300 FFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELF 353
Score = 105 (42.0 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 21 SQFFK--PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
+QFF IVP I L GR +GE V+FSS + AL+RH++ + RYIE+Y
Sbjct: 198 AQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKRHRNFLLSRYIEVY 254
Score = 79 (32.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPN--GITIPHDYAGRCTGVAYIQFVDKENA 197
C+RL+GLPYE + + FL + G+ + ++ G +G A+IQ ++++ A
Sbjct: 390 CVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAA 445
>UNIPROTKB|I3L687 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:MEANMTI
Ensembl:ENSSSCT00000030700 Uniprot:I3L687
Length = 437
Score = 189 (71.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 43/96 (44%), Positives = 57/96 (59%)
Query: 123 EMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGR 182
EMDW LK G +A D +RL+GLP+ C KE++ +F GLEIVPNG
Sbjct: 92 EMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGXE-------- 142
Query: 183 CTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 143 ----AFVQFASQEIAEKALKKHKERIGHRYIEIFKS 174
Score = 127 (49.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ GT
Sbjct: 296 FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGT 355
Query: 81 S 81
S
Sbjct: 356 S 356
Score = 107 (42.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L + I I D GR TG A ++F E+A A+ +
Sbjct: 278 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMAK 335
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 336 DKANMQHRYVELFLN 350
Score = 92 (37.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS----KEA--NGRGTG-- 91
GR SGEA VE S D+ + AL++ + MG RY+E++ K N T
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTAND 110
Query: 92 GFGGVKSTPYGVGIFCISQFLA 113
GF ++ P+G I QF +
Sbjct: 111 GFVRLRGLPFGCSKEEIVQFFS 132
Score = 84 (34.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 45 EADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
EA V+F+S + A++AL++HK +G RYIE++
Sbjct: 142 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 172
>UNIPROTKB|H0YB39 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YB39 Ensembl:ENST00000521173 Bgee:H0YB39 Uniprot:H0YB39
Length = 277
Score = 127 (49.8 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 183 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 236
Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 163 LEGLEIVPNGITIPHDYA---GRCTGVAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
L GLE P + ++ GR TG A++QF +E AEKAL +HKE+IGHR + + S
Sbjct: 3 LYGLEDFPLDVARKKLFSSSQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 61
Score = 110 (43.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
L + GRS+GEA V+F+S + A++AL++HK +G RYIE++
Sbjct: 18 LFSSSQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 59
Score = 109 (43.4 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 165 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 222
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 223 DKANMQHRYVELFLN 237
>WB|WBGene00020936 [details] [associations]
symbol:hrpf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:FO081084 GeneID:172395 KEGG:cel:CELE_W02D3.11 CTD:172395
RefSeq:NP_740877.1 ProteinModelPortal:Q9BIB7 SMR:Q9BIB7
DIP:DIP-24897N IntAct:Q9BIB7 MINT:MINT-1090704 STRING:Q9BIB7
PRIDE:Q9BIB7 EnsemblMetazoa:W02D3.11a.1 EnsemblMetazoa:W02D3.11a.2
UCSC:W02D3.11b WormBase:W02D3.11a HOGENOM:HOG000017293
InParanoid:Q9BIB7 OMA:EPYAQRE NextBio:875329 ArrayExpress:Q9BIB7
Uniprot:Q9BIB7
Length = 549
Score = 129 (50.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+RL+GLP+ D+ FL L IV +GI +P R G AY+ F E+ + A RH
Sbjct: 125 VRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRH 184
Query: 205 KEKIGHRLV 213
+ IGHR +
Sbjct: 185 MKNIGHRYI 193
Score = 101 (40.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 26 PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
PIV ILL R GEA V F +++ Q A QRH N+G RYIE++
Sbjct: 147 PIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVF 196
Score = 97 (39.2 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGGFGG 95
GR+SG+A V F++ +D AL++ + ++G RYIE++ G ++ + RG G G
Sbjct: 40 GRTSGDAKVVFTNEEDYNNALKKDREHLGSRYIEVFPAGGAPTRRGD-RGERGDRG 94
Score = 90 (36.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 33/144 (22%), Positives = 67/144 (46%)
Query: 85 ANGRGTGGFGGVKSTPYGV----GIFCISQFLAKWMRRAKRSEMDWALKRQ-GAVLSGSA 139
++ R G GG S PY G S++ R +K ++ R GA +
Sbjct: 412 SSDRDRYGSGGYASEPYAQREAGGAMRRSEYGRPDDRYSKPEPYGYSRDRDYGAPQNQHF 471
Query: 140 VDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYA-GRCTGVAYIQFVDKENAE 198
V +R++G+P+ + DV F + PN + + D+ R +G A + F ++++ +
Sbjct: 472 V----LRMRGVPFRASEADVYDFFHPIR--PNQVELLRDHQFQRPSGDARVIFYNRKDYD 525
Query: 199 KALLRHKEKIGHRLVTLVMSGAQW 222
AL++ K+ +G R + ++ ++
Sbjct: 526 DALMKDKQYMGERYIEMIPDNGRY 549
>TAIR|locus:2156897 [details] [associations]
symbol:AT5G66010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12898
IPI:IPI00541506 RefSeq:NP_201402.3 UniGene:At.28214
ProteinModelPortal:F4JZ11 SMR:F4JZ11 EnsemblPlants:AT5G66010.1
GeneID:836731 KEGG:ath:AT5G66010 OMA:YEVGSKR Uniprot:F4JZ11
Length = 255
Score = 113 (44.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
++++GLPY K + +F G +++ + + G+ TG A+++F E A +A+ +
Sbjct: 168 LKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKD 227
Query: 205 KEKIGHRLVTL 215
K IG R V L
Sbjct: 228 KMSIGSRYVEL 238
Score = 98 (39.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
+FF + V++LL++ + G+ SGEA V F+ + ALQR + NMG RY+E++
Sbjct: 67 EFFAGLNIVDVLLVSKN-GKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVF 119
>ZFIN|ZDB-GENE-070112-1732 [details] [associations]
symbol:esrp1 "epithelial splicing regulatory
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070112-1732 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 EMBL:BC129044 EMBL:BC134218 IPI:IPI00829273
RefSeq:NP_001074045.1 UniGene:Dr.13001 ProteinModelPortal:A1L1G1
SMR:A1L1G1 STRING:A1L1G1 Ensembl:ENSDART00000103431 GeneID:560190
KEGG:dre:560190 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 InParanoid:A4FVM7
KO:K14947 OMA:HIRQVIH OrthoDB:EOG42RD72 NextBio:20883322
Bgee:A1L1G1 Uniprot:A1L1G1
Length = 714
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F GL I G + + GR G A ++F +E+ + A
Sbjct: 223 DNTVIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLA 282
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 283 LQRHKHHMGGRYIEVYKATGEDFL 306
Score = 113 (44.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 22 QFFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
QFF P PV IL + GR +G+A V FS + AQ AL++HK +G RYIEL+
Sbjct: 344 QFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNALKKHKDMLGKRYIELF 402
Score = 112 (44.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY+ +D+ FL G +I +G+ + ++ GR +G A+IQ E A A
Sbjct: 451 CVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQMRSAERAFLAA 510
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
R HK + R V + AQ
Sbjct: 511 QRCHKRSMKERYVEVFACSAQ 531
Score = 108 (43.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 33/114 (28%), Positives = 55/114 (48%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG---ITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ E V +F V +G I GR TG A++ F +
Sbjct: 321 SRENQIIVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCE 380
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGAQWFLSPPLTNETPISRLDLTGSPVRSTI 248
E+A+ AL +HK+ +G R + L S A + L + + + SP+ S +
Sbjct: 381 EHAQNALKKHKDMLGKRYIELFKSTAAE-VQQVLNKYSSAPLIPVAPSPILSVV 433
Score = 107 (42.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FF+ I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 242 ARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKAT 301
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 302 GEDFLKIAG-GT 312
>UNIPROTKB|F1MSN9 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VIKQKYE EMBL:DAAA02046691
IPI:IPI00699877 UniGene:Bt.94194 Ensembl:ENSBTAT00000005736
NextBio:20869663 Uniprot:F1MSN9
Length = 717
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 148 QGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEK 207
+GLP++ +DV +F +GL I G+ + + GR G A I+FVD E + AL RHK
Sbjct: 252 RGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHH 311
Query: 208 IGHRLVTLVMSGAQWFL 224
+G R + + + + F+
Sbjct: 312 MGVRYIEVYKATGEEFV 328
Score = 115 (45.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 144 CMRLQGLPYECKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL ++I P+G+ + + GR +G A+IQ E A A
Sbjct: 466 CVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
Query: 202 LR-HKEKIGHRLVTLV 216
R HK+ + R V +V
Sbjct: 526 QRCHKKAMKERYVEVV 541
Score = 107 (42.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQR--ALQRHKSNMGDRYIELYM 76
++FFK I + L + GR +GEA + F VD QR ALQRHK +MG RYIE+Y
Sbjct: 264 ARFFKGLNIARGGVALCLNAQGRRNGEALIRF--VDSEQRDLALQRHKHHMGVRYIEVYK 321
Query: 77 EEGTSSKEANGRGT 90
G + G GT
Sbjct: 322 ATGEEFVKIAG-GT 334
Score = 106 (42.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 34/88 (38%), Positives = 44/88 (50%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG-----ITIPHDYAGRCTGVAYIQFV 192
S DQ +RL+GLP+ DV FL G E G + + H GR TG A+ F
Sbjct: 343 SREDQVILRLRGLPFSAGPADVLGFL-GPECPVTGGADGLLFVRHP-DGRPTGDAFALFA 400
Query: 193 DKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL RHK +G R + L S A
Sbjct: 401 CEELAQAALRRHKGMLGKRYIELFRSTA 428
Score = 91 (37.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A F+ + AQ AL+RHK +G RYIEL+
Sbjct: 367 FLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRS 426
Query: 78 EGTSSKEANGR 88
++ R
Sbjct: 427 TAAEVQQVLNR 437
>WB|WBGene00022253 [details] [associations]
symbol:hrpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 EMBL:FO081731 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K12898 RefSeq:NP_741422.1
ProteinModelPortal:Q8MXR2 SMR:Q8MXR2 DIP:DIP-24945N IntAct:Q8MXR2
MINT:MINT-1106723 STRING:Q8MXR2 PaxDb:Q8MXR2
EnsemblMetazoa:Y73B6BL.33 GeneID:177398 KEGG:cel:CELE_Y73B6BL.33
UCSC:Y73B6BL.33 CTD:177398 WormBase:Y73B6BL.33 HOGENOM:HOG000017787
InParanoid:Q8MXR2 OMA:QRMGRRY NextBio:896644 Uniprot:Q8MXR2
Length = 610
Score = 132 (51.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRC--TGVAYIQFVDKENAEKALL 202
+RL+G+P+ CK++DV KF EGLE P I I R +G A+++F ++ AEKA+
Sbjct: 159 IRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTTQDAAEKAMD 218
Query: 203 RHKEKIGHRLVTLVMS 218
+ +G R V + MS
Sbjct: 219 YNNRHMGSRYVEVFMS 234
Score = 106 (42.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 22 QFFKPIVPVNILLLTDDAG----RSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
+FF+ + P ++ G R SGEA V F++ D A++A+ + +MG RY+E++M
Sbjct: 175 KFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTTQDAAEKAMDYNNRHMGSRYVEVFMS 234
Query: 78 EGTSSKEANGRGTGGF 93
A G G+G +
Sbjct: 235 SMVEFNRAKGGGSGEY 250
Score = 86 (35.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSK 83
GR +GEA VEF + ++A +A++ + + +RYIE++ E ++
Sbjct: 99 GRPNGEAYVEFKNTEEAGKAMENDRKEISNRYIEVFTVEADEAE 142
Score = 75 (31.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 147 LQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKE 206
++GLPY+ + F L + + I + GR +G A +F + + + AL R+ +
Sbjct: 329 MRGLPYDADDHAIAAFFSPLRC--HSVKIGINETGRPSGDAIAEFDNYNDLQVALSRNNQ 386
Query: 207 KIGHRLVTL 215
++G R V L
Sbjct: 387 RMGRRYVEL 395
>UNIPROTKB|F1P8D4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:AAEX03018089 Ensembl:ENSCAFT00000000519 OMA:THEDAGA
Uniprot:F1P8D4
Length = 193
Score = 149 (57.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ G
Sbjct: 107 FFSPLNPVRVHIEIGPGGRVAGEADVEFATHEDAGAAMSKDKANMQHRYVELFLNSTAGA 166
Query: 81 SSKEANGRGTGGFGGVKSTPYG 102
SS + GG G + YG
Sbjct: 167 SSGAYGSQMMGGMGLSNQSSYG 188
>MGI|MGI:1924661 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924661 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
HSSP:P55795 CTD:80004 OMA:VIKQKYE OrthoDB:EOG49078K EMBL:BC031444
EMBL:AK020578 IPI:IPI00276878 RefSeq:NP_789808.1 UniGene:Mm.183003
ProteinModelPortal:Q8K0G8 SMR:Q8K0G8 STRING:Q8K0G8
PhosphoSite:Q8K0G8 PaxDb:Q8K0G8 PRIDE:Q8K0G8
Ensembl:ENSMUST00000115979 GeneID:77411 KEGG:mmu:77411
UCSC:uc009nff.1 InParanoid:Q8K0G8 NextBio:346885 Bgee:Q8K0G8
CleanEx:MM_RBM35B Genevestigator:Q8K0G8 Uniprot:Q8K0G8
Length = 717
Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 132 GAVLSGSAVD-QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
G VD + +R +GLP++ +DV +F +GL I G+ + + GR G A I+
Sbjct: 235 GPCSKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIR 294
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFL 224
FVD E + AL RHK +G R + + + + F+
Sbjct: 295 FVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFV 328
Score = 113 (44.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 144 CMRLQGLPYECKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I P+G+ + + GR +G A+IQ + E A A
Sbjct: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 525
Query: 202 LR-HKEKIGHRLVTLV 216
R HK+ + R V +V
Sbjct: 526 QRCHKKMMKERYVEVV 541
Score = 107 (42.7 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQR--ALQRHKSNMGDRYIELYM 76
++FFK I + L + GR +GEA + F VD QR ALQRHK +MG RYIE+Y
Sbjct: 264 ARFFKGLNIARGGVALCLNAQGRRNGEALIRF--VDSEQRDLALQRHKHHMGVRYIEVYK 321
Query: 77 EEGTSSKEANGRGT 90
G + G GT
Sbjct: 322 ATGEEFVKIAG-GT 334
Score = 106 (42.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 34/88 (38%), Positives = 44/88 (50%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG-----ITIPHDYAGRCTGVAYIQFV 192
S DQ +RL+GLP+ DV FL G E G + + H GR TG A+ F
Sbjct: 343 SREDQVILRLRGLPFSAGPTDVLGFL-GPECPVTGGADGLLFVRHP-DGRPTGDAFALFA 400
Query: 193 DKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL RHK +G R + L S A
Sbjct: 401 CEELAQAALRRHKGMLGKRYIELFRSTA 428
Score = 91 (37.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A F+ + AQ AL+RHK +G RYIEL+
Sbjct: 367 FLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRS 426
Query: 78 EGTSSKEANGR 88
++ R
Sbjct: 427 TAAEVQQVLNR 437
>RGD|1310855 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA;ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1310855 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
eggNOG:NOG262593 HOGENOM:HOG000112401 OrthoDB:EOG49078K
EMBL:BC166804 IPI:IPI00359594 UniGene:Rn.231924
ProteinModelPortal:B2RYJ8 SMR:B2RYJ8 PhosphoSite:B2RYJ8
PRIDE:B2RYJ8 UCSC:RGD:1310855 ArrayExpress:B2RYJ8
Genevestigator:B2RYJ8 Uniprot:B2RYJ8
Length = 716
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
++ +R +GLP++ +DV +F +GL I G+ + + GR G A I+F D E + A
Sbjct: 244 NETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLA 303
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + F+
Sbjct: 304 LQRHKHHMGVRYIEVYKATGEEFV 327
Score = 112 (44.5 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 144 CMRLQGLPYECKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I P+G+ + + GR +G A+IQ + E A A
Sbjct: 465 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 524
Query: 202 LR-HKEKIGHRLVTLV 216
R HK+ + R V +V
Sbjct: 525 QRCHKKVMKERYVEVV 540
Score = 109 (43.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 35/88 (39%), Positives = 45/88 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEI-VPNGIT----IPHDYAGRCTGVAYIQFV 192
S DQ +RL+GLP+ DV FL G E V G+ + H GR TG A+ F
Sbjct: 342 SREDQVILRLRGLPFSAGPADVLDFL-GPECPVTGGVDGLLFVRHP-DGRPTGDAFALFA 399
Query: 193 DKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL RHK +G R + L S A
Sbjct: 400 CEELAQAALRRHKGMLGKRYIELFRSTA 427
Score = 107 (42.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I + L + GR +GEA + F + ALQRHK +MG RYIE+Y
Sbjct: 263 ARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKAT 322
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 323 GEEFVKIAG-GT 333
Score = 91 (37.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A F+ + AQ AL+RHK +G RYIEL+
Sbjct: 366 FLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRS 425
Query: 78 EGTSSKEANGR 88
++ R
Sbjct: 426 TAAEVQQVLNR 436
>UNIPROTKB|F1PA85 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
EMBL:AAEX03004121 RefSeq:XP_851504.1 Ensembl:ENSCAFT00000032365
GeneID:489745 KEGG:cfa:489745 Uniprot:F1PA85
Length = 717
Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 132 GAVLSGSAVD-QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
G VD + +R +GLP++ +DV +F +GL I G+ + + GR G A I+
Sbjct: 235 GPCSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIR 294
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFL 224
FVD E + AL RHK +G R + + + + F+
Sbjct: 295 FVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFV 328
Score = 112 (44.5 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 144 CMRLQGLPYECKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I P+G+ + + GR +G A+IQ E A A
Sbjct: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 525
Query: 202 LR-HKEKIGHRLVTLV 216
R HK+ + R V +V
Sbjct: 526 QRCHKKVMKERYVEVV 541
Score = 107 (42.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQR--ALQRHKSNMGDRYIELYM 76
++FFK I + L + GR +GEA + F VD QR ALQRHK +MG RYIE+Y
Sbjct: 264 ARFFKGLNIARGGVALCLNAQGRRNGEALIRF--VDSEQRDLALQRHKHHMGVRYIEVYK 321
Query: 77 EEGTSSKEANGRGT 90
G + G GT
Sbjct: 322 ATGEEFVKIAG-GT 334
Score = 104 (41.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 34/88 (38%), Positives = 44/88 (50%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG-----ITIPHDYAGRCTGVAYIQFV 192
S DQ +RL+GLP+ DV FL G E G + + H GR TG A+ F
Sbjct: 343 SREDQVILRLRGLPFSAGPADVLGFL-GPECPVTGGADGLLFVRHP-DGRPTGDAFALFA 400
Query: 193 DKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL RHK +G R + L S A
Sbjct: 401 CEELAQAALRRHKGILGKRYIELFRSTA 428
Score = 90 (36.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A F+ + AQ AL+RHK +G RYIEL+
Sbjct: 367 FLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGILGKRYIELFRS 426
Query: 78 EGTSSKEANGR 88
++ R
Sbjct: 427 TAAEVQQVLNR 437
>UNIPROTKB|G3V8M2 [details] [associations]
symbol:Esrp2 "Epithelial-splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 RGD:1310855 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473972
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
UniGene:Rn.231924 RefSeq:NP_001100893.1 PRIDE:G3V8M2
Ensembl:ENSRNOT00000026873 GeneID:307810 KEGG:rno:307810
NextBio:657907 Uniprot:G3V8M2
Length = 717
Score = 134 (52.2 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 132 GAVLSGSAVD-QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
G VD + +R +GLP++ +DV +F +GL I G+ + + GR G A I+
Sbjct: 235 GPCSKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIR 294
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFL 224
F D E + AL RHK +G R + + + + F+
Sbjct: 295 FEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFV 328
Score = 112 (44.5 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 144 CMRLQGLPYECKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I P+G+ + + GR +G A+IQ + E A A
Sbjct: 466 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 525
Query: 202 LR-HKEKIGHRLVTLV 216
R HK+ + R V +V
Sbjct: 526 QRCHKKVMKERYVEVV 541
Score = 109 (43.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 35/88 (39%), Positives = 45/88 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEI-VPNGIT----IPHDYAGRCTGVAYIQFV 192
S DQ +RL+GLP+ DV FL G E V G+ + H GR TG A+ F
Sbjct: 343 SREDQVILRLRGLPFSAGPADVLDFL-GPECPVTGGVDGLLFVRHP-DGRPTGDAFALFA 400
Query: 193 DKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL RHK +G R + L S A
Sbjct: 401 CEELAQAALRRHKGMLGKRYIELFRSTA 428
Score = 107 (42.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I + L + GR +GEA + F + ALQRHK +MG RYIE+Y
Sbjct: 264 ARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKAT 323
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 324 GEEFVKIAG-GT 334
Score = 91 (37.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A F+ + AQ AL+RHK +G RYIEL+
Sbjct: 367 FLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRS 426
Query: 78 EGTSSKEANGR 88
++ R
Sbjct: 427 TAAEVQQVLNR 437
>UNIPROTKB|Q9H6T0 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0005813
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
HOGENOM:HOG000112401 KO:K14947 HSSP:Q9Z2X1 CTD:80004 OMA:VIKQKYE
OrthoDB:EOG49078K EMBL:AK025571 EMBL:AK025901 EMBL:BC030146
EMBL:AF289577 IPI:IPI00034099 IPI:IPI00827597 RefSeq:NP_079215.2
UniGene:Hs.436585 UniGene:Hs.592053 ProteinModelPortal:Q9H6T0
SMR:Q9H6T0 IntAct:Q9H6T0 STRING:Q9H6T0 PhosphoSite:Q9H6T0
DMDM:74761482 PaxDb:Q9H6T0 PRIDE:Q9H6T0 Ensembl:ENST00000473183
Ensembl:ENST00000565858 GeneID:80004 KEGG:hsa:80004 UCSC:uc002evq.1
UCSC:uc010cfa.1 GeneCards:GC16M068263 HGNC:HGNC:26152 HPA:HPA048597
MIM:612960 neXtProt:NX_Q9H6T0 PharmGKB:PA164719361
InParanoid:Q9H6T0 ChiTaRS:ESRP2 GenomeRNAi:80004 NextBio:70079
Bgee:Q9H6T0 CleanEx:HS_RBM35B Genevestigator:Q9H6T0 Uniprot:Q9H6T0
Length = 727
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 140 VD-QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAE 198
VD + +R +GLP++ +DV +F +GL + G+ + + GR G A I+FVD E +
Sbjct: 253 VDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRD 312
Query: 199 KALLRHKEKIGHRLVTLVMSGAQWFL 224
AL RHK +G R + + + + F+
Sbjct: 313 LALQRHKHHMGVRYIEVYKATGEEFV 338
Score = 112 (44.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 144 CMRLQGLPYECKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I P+G+ + + GR +G A+IQ E A A
Sbjct: 476 CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 535
Query: 202 LR-HKEKIGHRLVTLV 216
R HK+ + R V +V
Sbjct: 536 QRCHKKVMKERYVEVV 551
Score = 107 (42.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 35/88 (39%), Positives = 44/88 (50%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGIT-----IPHDYAGRCTGVAYIQFV 192
S DQ +RL+GLP+ DV FL G E G T + H GR TG A+ F
Sbjct: 353 SREDQVILRLRGLPFSAGPTDVLGFL-GPECPVTGGTEGLLFVRHP-DGRPTGDAFALFA 410
Query: 193 DKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL RHK +G R + L S A
Sbjct: 411 CEELAQAALRRHKGMLGKRYIELFRSTA 438
Score = 106 (42.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 31/74 (41%), Positives = 41/74 (55%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQR--ALQRHKSNMGDRYIELYM 76
++FFK + + L + GR +GEA + F VD QR ALQRHK +MG RYIE+Y
Sbjct: 274 ARFFKGLNVARGGVALCLNAQGRRNGEALIRF--VDSEQRDLALQRHKHHMGVRYIEVYK 331
Query: 77 EEGTSSKEANGRGT 90
G + G GT
Sbjct: 332 ATGEEFVKIAG-GT 344
Score = 94 (38.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A F+ + AQ AL+RHK +G RYIEL+
Sbjct: 377 FLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRS 436
Query: 78 EGTSSKEANGRGTGG 92
++ R G
Sbjct: 437 TAAEVQQVLNRYASG 451
>UNIPROTKB|F1P509 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0043484 "regulation
of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GeneTree:ENSGT00620000087828 OMA:VAAMTEC
EMBL:AADN02024878 IPI:IPI00596521 Ensembl:ENSGALT00000025730
Uniprot:F1P509
Length = 523
Score = 143 (55.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ KF +GL I G + + GR G A ++FV++E+ + A
Sbjct: 137 DNAVIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLA 196
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G+R + + + + FL
Sbjct: 197 LQRHKHHMGNRYIEVYKATGEDFL 220
Score = 113 (44.8 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 30/73 (41%), Positives = 40/73 (54%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F + + ALQRHK +MG+RYIE+Y
Sbjct: 156 AKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQRHKHHMGNRYIEVYKAT 215
Query: 79 GTSS-KEANGRGT 90
G K A +GT
Sbjct: 216 GEDFLKIAGAKGT 228
Score = 101 (40.6 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ +FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 362 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFLAA 421
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
R HK+ + R V + A+
Sbjct: 422 QRCHKKTMKDRYVEVFQCSAE 442
Score = 93 (37.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG------ITIPHDYAGRCTGVAYIQF 191
S +Q +R++GLP+ E+V F V G +T P R TG A++ F
Sbjct: 237 SKENQVIVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDS---RPTGDAFVLF 293
Query: 192 VDKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL +HK+ +G R + L S A
Sbjct: 294 ACEEYAQNALKKHKDLLGKRYIELFRSTA 322
Score = 91 (37.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
+L +T R +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 275 VLFVTYPDSRPTGDAFVLFACEEYAQNALKKHKDLLGKRYIELFRSTAAEVQQVLNR 331
>UNIPROTKB|Q5ZLR4 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484
eggNOG:NOG262593 GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401
KO:K14947 HSSP:Q9Z2X1 EMBL:AJ719670 IPI:IPI00574410
RefSeq:NP_001025737.1 UniGene:Gga.9032 ProteinModelPortal:Q5ZLR4
SMR:Q5ZLR4 PRIDE:Q5ZLR4 Ensembl:ENSGALT00000005333 GeneID:415710
KEGG:gga:415710 CTD:80004 InParanoid:Q5ZLR4 OMA:VIKQKYE
OrthoDB:EOG49078K NextBio:20819270 Uniprot:Q5ZLR4
Length = 701
Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 132 GAVLSGSAVD-QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
G VD + +R +GLP++ +D+ +F +GL I G+ + + GR G A ++
Sbjct: 214 GPCSKSETVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVR 273
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFL 224
FV+ E + AL RHK +G R + + + + FL
Sbjct: 274 FVNSEQRDLALERHKHHMGSRYIEVYKATGEEFL 307
Score = 109 (43.4 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 39/110 (35%), Positives = 55/110 (50%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIV----PNGITIPHDYAGRCTGVAYIQFVD 193
S +Q +R++GLP+ +EDV FL G E G+ GR TG A++ F
Sbjct: 322 SKENQVIIRMRGLPFTATQEDVLGFL-GPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSC 380
Query: 194 KENAEKALLRHKEKIGHRLVTLVMSGA-------QWFLSPPL--TNETPI 234
+E A+ AL +HKE +G R + L S A ++S PL T TPI
Sbjct: 381 EEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPI 430
Score = 108 (43.1 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I + L + GR +GEA V F + + AL+RHK +MG RYIE+Y
Sbjct: 243 ARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKAT 302
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 303 GEEFLKIAG-GT 313
Score = 94 (38.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A V FS + AQ AL++HK +G RYIEL+
Sbjct: 346 FLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRS 405
Query: 78 EGTSSKEANGR 88
++ R
Sbjct: 406 TAAEVQQVLNR 416
Score = 93 (37.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 134 VLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGL--EIVPNGITIPHDYAGRCTGVAYIQF 191
+ +GS D C+RL+GLPY +D+ F+ +I P+G+ + + GR +G A+IQ
Sbjct: 440 IATGSIRD--CVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQM 497
Query: 192 VDKENAEKALLR-HKEKIGHRLVTLVM-SGAQ 221
+ A + HK+ + R V + SG +
Sbjct: 498 KSADKAFMVAQKCHKKMMKDRYVEVFQCSGEE 529
Score = 58 (25.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPN 171
+R+QGLPY +++ F +G + P+
Sbjct: 650 VRMQGLPYNTGMKEILSFFQGYQYAPD 676
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 96 VKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVDQ 142
++ PY GI I F+ K + L +QG SG A Q
Sbjct: 451 LRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRP-SGDAFIQ 496
>UNIPROTKB|F5GZT4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00983613
ProteinModelPortal:F5GZT4 SMR:F5GZT4 PRIDE:F5GZT4
Ensembl:ENST00000511300 UCSC:uc011dgn.2 ArrayExpress:F5GZT4
Bgee:F5GZT4 Uniprot:F5GZT4
Length = 159
Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ G
Sbjct: 38 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGA 97
Query: 81 SSKEANGRGTGGFGGVKSTPYG 102
S + GG G + YG
Sbjct: 98 SGGAYGSQMLGGMGLSNQSSYG 119
Score = 109 (43.4 bits), Expect = 0.00010, P = 0.00010
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 20 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 77
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 78 DKANMQHRYVELFLN 92
>UNIPROTKB|H0YBG7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 PRIDE:H0YBG7
Ensembl:ENST00000519033 Bgee:H0YBG7 Uniprot:H0YBG7
Length = 185
Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ G
Sbjct: 64 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGA 123
Query: 81 SSKEANGRGTGGFGGVKSTPYG 102
S + GG G + YG
Sbjct: 124 SGGAYGSQMLGGMGLSNQSSYG 145
Score = 109 (43.4 bits), Expect = 0.00034, P = 0.00034
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 46 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 103
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 104 DKANMQHRYVELFLN 118
>ZFIN|ZDB-GENE-081022-16 [details] [associations]
symbol:rbm12 "RNA binding motif protein 12"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-081022-16 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG057691 CTD:10137 HOGENOM:HOG000143525
EMBL:BC162102 EMBL:BC162473 EMBL:AY226101 IPI:IPI00483025
RefSeq:NP_001003856.1 UniGene:Dr.133225 SMR:Q6XLI5 GeneID:445379
KEGG:dre:445379 NextBio:20832083 Uniprot:Q6XLI5
Length = 876
Score = 119 (46.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLPYE + + + +F + L+IV + I I + GR TG +++F ++ + + AL
Sbjct: 425 CVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGC 484
Query: 204 HKEKIGHRLV 213
H + +G R +
Sbjct: 485 HMQYMGSRFI 494
Score = 119 (46.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 41/142 (28%), Positives = 69/142 (48%)
Query: 86 NGRGTG-GFGGVKST-PYGVGIFCISQFL-AKWMRR---AKRS---EMDWALKR----QG 132
NGR TG GF ++ Y + C Q++ +++++ K++ ++D KR QG
Sbjct: 461 NGRATGEGFVEFRNEMDYKAALGCHMQYMGSRFIQVHPITKKNMYEKIDAIRKRMQGSQG 520
Query: 133 AVLS---GSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYI 189
S G + C + +PY K+DV FL+G+E+ + + D G G A +
Sbjct: 521 DQKSSSGGGKSAKSCAHITNIPYNVTKKDVRLFLDGIELFEESLKVLVDSNGNGLGQAIV 580
Query: 190 QFVDKENAEKALLRHKEKIGHR 211
QF E+A KA H++K+ R
Sbjct: 581 QFKSDEDALKAERLHRQKLNGR 602
Score = 96 (38.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF + +I LL D+ GR+SG A V+F S ++ AL+R+ +G RYIE+
Sbjct: 321 FFHGLGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRNAGMIGQRYIEVSPATERQW 380
Query: 83 KEANGRGTGG 92
+E+ G G
Sbjct: 381 RESVGHSKAG 390
Score = 75 (31.5 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 16/74 (21%), Positives = 37/74 (50%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + G TG A + F + A A++
Sbjct: 802 VKIQNMPFTVTVDEIIDFFYGYQVLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAAVMDL 861
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V + +
Sbjct: 862 NDRPIGARKVKITL 875
Score = 42 (19.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R ++ + L + T
Sbjct: 37 GGEHGEAFIVFATDEDARLGMMRTGGSIKGSKVSLLLSSKT 77
>UNIPROTKB|H0YBR2 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000519505
Uniprot:H0YBR2
Length = 502
Score = 135 (52.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 89 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 148
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 149 LQRHKHHMGTRYIEVYKATGEDFL 172
Score = 108 (43.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 108 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 167
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 168 GEDFLKIAG-GT 178
Score = 102 (41.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ E+V F + I GI GR TG A++ F +
Sbjct: 187 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 246
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 247 EYAQNALRKHKDLLGKRYIELFRSTA 272
Score = 98 (39.6 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 312 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 371
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 372 QKCHKKNMKDRYVEVFQCSAE 392
Score = 98 (39.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 225 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 281
>ZFIN|ZDB-GENE-030131-9824 [details] [associations]
symbol:esrp2 "epithelial splicing regulatory
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0043484 "regulation of RNA
splicing" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-9824 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:Q9Z2X1 CTD:80004 EMBL:BC045439 EMBL:BC065688
IPI:IPI00488983 IPI:IPI00769676 RefSeq:NP_954966.1 UniGene:Dr.200
ProteinModelPortal:Q7ZVR8 SMR:Q7ZVR8 STRING:Q7ZVR8 PRIDE:Q7ZVR8
GeneID:572992 KEGG:dre:572992 InParanoid:Q7ZVR8 NextBio:20891026
Uniprot:Q7ZVR8
Length = 736
Score = 145 (56.1 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 132 GAVLSGSAVD-QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQ 190
GA AVD + +R +GLP++ +D+ +F +GL I G+ + + GR G A ++
Sbjct: 212 GACSKTEAVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVR 271
Query: 191 FVDKENAEKALLRHKEKIGHRLVTLVMSGAQWFL 224
F++ E+ + AL RHK +G R + + + + FL
Sbjct: 272 FINSEHRDMALDRHKHHMGSRYIEVYKATGEEFL 305
Score = 108 (43.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 39/121 (32%), Positives = 60/121 (49%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEI-VPNGIT--IPHDYA-GRCTGVAYIQFVD 193
S +Q +R++GLP+ +DV FL G E V +G + Y GR TG A++ F
Sbjct: 320 SKENQMIIRMRGLPFTATPQDVLGFL-GPECPVTDGTEGLLFVKYPDGRPTGDAFVLFAC 378
Query: 194 KENAEKALLRHKEKIGHRLVTLVMSGA-------QWFLSPPLTNETPISRLDLTGSPVRS 246
+E A+ AL +HK+ +G R + L S A ++S PL + P + PV +
Sbjct: 379 EEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLA 438
Query: 247 T 247
T
Sbjct: 439 T 439
Score = 106 (42.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I + L + GR +GEA V F + + AL RHK +MG RYIE+Y
Sbjct: 241 ARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDRHKHHMGSRYIEVYKAT 300
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 301 GEEFLKIAG-GT 311
Score = 100 (40.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 134 VLSGSAVDQCCMRLQGLPYECKKEDVEKFL--EGLEIVPNGITIPHDYAGRCTGVAYIQF 191
+ +G+ D C+RL+GLPY ED+ +F+ ++I P+G+ + + GR +G A+IQ
Sbjct: 443 ITTGNTRD--CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQM 500
Query: 192 VDKENAEKALLR-HKEKIGHRLV 213
+ A + HK+ + R V
Sbjct: 501 KSADRAFMVAQKCHKKMMKDRYV 523
Score = 92 (37.4 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 15/57 (26%), Positives = 36/57 (63%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
+R+QGLPY +D+ F +G ++ + + + ++++G+ +G A + F ++ A +A+
Sbjct: 661 VRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAV 717
Score = 91 (37.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 23 FFKPIVPVN-----ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME 77
F P PV +L + GR +G+A V F+ + AQ AL++HK +G RYIEL+
Sbjct: 344 FLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRS 403
Query: 78 EGTSSKEANGR 88
++ R
Sbjct: 404 TAAEVQQVLNR 414
Score = 85 (35.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 27 IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELY 75
I P + ++ + GR SG+A ++ S D A Q+ HK M DRY+E++
Sbjct: 477 IKPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRYVEVF 526
>UNIPROTKB|F2Z5W4 [details] [associations]
symbol:LOC100737162 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00620000087736 EMBL:CU468421
Ensembl:ENSSSCT00000011205 Uniprot:F2Z5W4
Length = 133
Score = 142 (55.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ P+ + + GR++GEADVEF + +DA A+ + K+NM RYIEL++
Sbjct: 1 FFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGG 60
Query: 83 KEA-NGRGTGGFG 94
G G GG+G
Sbjct: 61 GSGMGGSGMGGYG 73
>MGI|MGI:1917326 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917326 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH466538 SUPFAM:SSF53098 GO:GO:0043484
EMBL:AL772170 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 EMBL:AK042164 EMBL:AK140848
EMBL:AK166376 EMBL:BC031468 EMBL:BC059280 IPI:IPI00377935
IPI:IPI00649037 IPI:IPI00828247 IPI:IPI00828788 IPI:IPI01027663
RefSeq:NP_918944.2 UniGene:Mm.387719 HSSP:Q9Z2X1
ProteinModelPortal:Q3US41 SMR:Q3US41 STRING:Q3US41 PaxDb:Q3US41
PRIDE:Q3US41 Ensembl:ENSMUST00000043781 Ensembl:ENSMUST00000108310
Ensembl:ENSMUST00000108313 Ensembl:ENSMUST00000147342
Ensembl:ENSMUST00000155519 GeneID:207920 KEGG:mmu:207920
UCSC:uc008rzk.2 UCSC:uc008rzl.2 UCSC:uc008rzm.2 UCSC:uc008rzn.1
InParanoid:Q3US41 NextBio:372085 Bgee:Q3US41 CleanEx:MM_RBM35A
Genevestigator:Q3US41 Uniprot:Q3US41
Length = 680
Score = 135 (52.6 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 222 DSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 281
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 282 LQRHKHHMGTRYIEVYKATGEDFL 305
Score = 108 (43.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 241 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 300
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 301 GEDFLKIAG-GT 311
Score = 105 (42.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ E+V F + I GI GR TG A++ F +
Sbjct: 320 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HKE +G R + L S A
Sbjct: 380 EYAQNALRKHKELLGKRYIELFRSTA 405
Score = 98 (39.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 358 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 97 (39.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 445 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAA 504
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 505 QKYHKKTMKDRYVEVFQCSAE 525
>UNIPROTKB|H0YBB3 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000517610
Bgee:H0YBB3 Uniprot:H0YBB3
Length = 522
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 82 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 141
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 142 LQRHKHHMGTRYIEVYKATGEDFL 165
Score = 108 (43.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 101 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 160
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 161 GEDFLKIAG-GT 171
Score = 102 (41.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ E+V F + I GI GR TG A++ F +
Sbjct: 180 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 239
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 240 EYAQNALRKHKDLLGKRYIELFRSTA 265
Score = 98 (39.6 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 305 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 364
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 365 QKCHKKNMKDRYVEVFQCSAE 385
Score = 98 (39.6 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 218 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 274
>RGD|1560481 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA;ISO;ISS] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
EMBL:AABR03040708 EMBL:AABR03042124 EMBL:BC166735 IPI:IPI00929919
IPI:IPI00948834 RefSeq:NP_001121036.2 UniGene:Rn.161971
Ensembl:ENSRNOT00000067129 GeneID:500409 KEGG:rno:500409
UCSC:RGD:1560481 NextBio:706112 ArrayExpress:B2RYD2
Genevestigator:B2RYD2 Uniprot:B2RYD2
Length = 677
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + AL RH
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 205 KEKIGHRLVTLVMSGAQWFL 224
K +G R + + + + FL
Sbjct: 287 KHHMGTRYIEVYKATGEDFL 306
Score = 108 (43.1 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 242 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 301
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 302 GEDFLKIAG-GT 312
Score = 102 (41.0 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ E+V F + I GI GR TG A++ F +
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTA 406
Score = 98 (39.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97 (39.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 446 CVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAA 505
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSAE 526
>UNIPROTKB|Q6NXG1 [details] [associations]
symbol:ESRP1 "Epithelial splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593 KO:K14947 EMBL:BX647570
EMBL:AC108860 EMBL:AP005660 EMBL:BC019932 EMBL:BC067098
EMBL:BC099916 EMBL:BC112043 EMBL:AK000178 IPI:IPI00184262
IPI:IPI00654821 IPI:IPI00789651 IPI:IPI00797684 IPI:IPI00889741
RefSeq:NP_001030087.2 RefSeq:NP_001116297.1 RefSeq:NP_001116298.1
RefSeq:NP_001116299.1 RefSeq:NP_060167.2 UniGene:Hs.487471 PDB:2DHA
PDBsum:2DHA ProteinModelPortal:Q6NXG1 SMR:Q6NXG1 STRING:Q6NXG1
PhosphoSite:Q6NXG1 DMDM:124020999 PaxDb:Q6NXG1 PRIDE:Q6NXG1
Ensembl:ENST00000358397 Ensembl:ENST00000423620
Ensembl:ENST00000433389 Ensembl:ENST00000454170 GeneID:54845
KEGG:hsa:54845 UCSC:uc003ygq.4 UCSC:uc003ygr.4 UCSC:uc003ygt.4
UCSC:uc003ygv.3 GeneCards:GC08P095653 HGNC:HGNC:25966 HPA:HPA023719
HPA:HPA023720 MIM:612959 neXtProt:NX_Q6NXG1 PharmGKB:PA164719324
InParanoid:Q6NXG1 OMA:VAAMTEC ChiTaRS:ESRP1
EvolutionaryTrace:Q6NXG1 GenomeRNAi:54845 NextBio:57677
ArrayExpress:Q6NXG1 Bgee:Q6NXG1 CleanEx:HS_RBM35A
Genevestigator:Q6NXG1 Uniprot:Q6NXG1
Length = 681
Score = 135 (52.6 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 223 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 283 LQRHKHHMGTRYIEVYKATGEDFL 306
Score = 108 (43.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 242 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 301
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 302 GEDFLKIAG-GT 312
Score = 102 (41.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ E+V F + I GI GR TG A++ F +
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTA 406
Score = 98 (39.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAE 526
Score = 98 (39.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
>UNIPROTKB|F1LP81 [details] [associations]
symbol:Esrp1 "Epithelial-splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 IPI:IPI00558323
Ensembl:ENSRNOT00000010846 ArrayExpress:F1LP81 Uniprot:F1LP81
Length = 681
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + AL RH
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
Query: 205 KEKIGHRLVTLVMSGAQWFL 224
K +G R + + + + FL
Sbjct: 287 KHHMGTRYIEVYKATGEDFL 306
Score = 108 (43.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 242 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 301
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 302 GEDFLKIAG-GT 312
Score = 102 (41.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ E+V F + I GI GR TG A++ F +
Sbjct: 321 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTA 406
Score = 98 (39.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97 (39.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 446 CVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAA 505
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSAE 526
>UNIPROTKB|F1PQY5 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03015961 Ensembl:ENSCAFT00000014811 Uniprot:F1PQY5
Length = 521
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 63 DNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 122
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 123 LQRHKHHMGTRYIEVYKATGEDFL 146
Score = 108 (43.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 82 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 141
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 142 GEDFLKIAG-GT 152
Score = 99 (39.9 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ ++V F + I GI GR TG A++ F +
Sbjct: 161 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 220
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 221 EYAQNALRKHKDLLGKRYIELFRSTA 246
Score = 98 (39.6 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 199 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 97 (39.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 286 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 345
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 346 QKCHKKTMKDRYVEVFQCSAE 366
>UNIPROTKB|F1MVN3 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 CTD:54845
GeneTree:ENSGT00620000087828 KO:K14947 OMA:VAAMTEC
EMBL:DAAA02039465 IPI:IPI00913393 RefSeq:NP_001179931.1
UniGene:Bt.62027 Ensembl:ENSBTAT00000037192 GeneID:538640
KEGG:bta:538640 NextBio:20877490 Uniprot:F1MVN3
Length = 677
Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 223 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 283 LQRHKHHMGSRYIEVYKATGEDFL 306
Score = 109 (43.4 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 242 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGSRYIEVYKAT 301
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 302 GEDFLKIAG-GT 312
Score = 99 (39.9 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ ++V F + I GI GR TG A++ F +
Sbjct: 321 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 380
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 381 EYAQNALRKHKDLLGKRYIELFRSTA 406
Score = 98 (39.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 359 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97 (39.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAE 526
>UNIPROTKB|Q6DEZ7 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
SUPFAM:SSF53098 GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:P55795 EMBL:BC076946 RefSeq:NP_001005057.1
UniGene:Str.5962 ProteinModelPortal:Q6DEZ7 SMR:Q6DEZ7 PRIDE:Q6DEZ7
Ensembl:ENSXETT00000032125 GeneID:448608 KEGG:xtr:448608
Xenbase:XB-GENE-985138 InParanoid:Q6DEZ7 Bgee:Q6DEZ7 Uniprot:Q6DEZ7
Length = 687
Score = 138 (53.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 224 DNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 283
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G+R + + + + FL
Sbjct: 284 LQRHKHHMGNRYIEVYKATGEDFL 307
Score = 110 (43.8 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG+RYIE+Y
Sbjct: 243 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKAT 302
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 303 GEDFLKIAG-GT 313
Score = 98 (39.6 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG------ITIPHDYAGRCTGVAYIQF 191
S +Q +R++GLP+ E+V F V G +T P + R TG A++ F
Sbjct: 322 SKENQVIVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDN---RPTGDAFVLF 378
Query: 192 VDKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL +HKE +G R + L S A
Sbjct: 379 ACEEYAQNALKKHKELLGKRYIELFRSTA 407
Score = 96 (38.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ +FL +I +G+ + ++ GR +G ++IQ + A A
Sbjct: 447 CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAA 506
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 507 QKCHKKTMKDRYVEVFQCSAE 527
Score = 92 (37.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T R +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 50 (22.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIP-HDYA 180
+R+QGL Y +++ F +G + P +P +D A
Sbjct: 638 VRMQGLAYNSGVKEILNFFQGYQYSPEDGLLPVNDQA 674
>UNIPROTKB|Q7ZY29 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
CTD:54845 KO:K14947 EMBL:BC044002 RefSeq:NP_001079524.1
UniGene:Xl.14515 HSSP:P55795 ProteinModelPortal:Q7ZY29 SMR:Q7ZY29
PRIDE:Q7ZY29 GeneID:379211 KEGG:xla:379211 Xenbase:XB-GENE-985143
Uniprot:Q7ZY29
Length = 688
Score = 138 (53.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 224 DNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 283
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G+R + + + + FL
Sbjct: 284 LQRHKHHMGNRYIEVYKATGEDFL 307
Score = 110 (43.8 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG+RYIE+Y
Sbjct: 243 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKAT 302
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 303 GEDFLKIAG-GT 313
Score = 98 (39.6 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNG------ITIPHDYAGRCTGVAYIQF 191
S +Q +R++GLP+ E+V F V G +T P + R TG A++ F
Sbjct: 322 SKENQVIVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDN---RPTGDAFVLF 378
Query: 192 VDKENAEKALLRHKEKIGHRLVTLVMSGA 220
+E A+ AL +HKE +G R + L S A
Sbjct: 379 ACEEYAQNALKKHKELLGKRYIELFRSTA 407
Score = 96 (38.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ +FL +I +G+ + ++ GR +G ++IQ + A A
Sbjct: 447 CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAA 506
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 507 QKCHKKTMKDRYVEVFQCSAE 527
Score = 92 (37.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T R +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 360 ILFVTYPDNRPTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 54 (24.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIP-HDYA 180
+R+QGL Y +D+ F +G + P +P +D A
Sbjct: 639 VRMQGLAYNSGVKDILNFFQGYQYSPEDGLLPVNDQA 675
>UNIPROTKB|F1PSN8 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:AAEX03015961
Ensembl:ENSCAFT00000014804 Uniprot:F1PSN8
Length = 634
Score = 135 (52.6 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 180 DNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 239
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 240 LQRHKHHMGTRYIEVYKATGEDFL 263
Score = 108 (43.1 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 199 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 258
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 259 GEDFLKIAG-GT 269
Score = 99 (39.9 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ ++V F + I GI GR TG A++ F +
Sbjct: 278 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 337
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 338 EYAQNALRKHKDLLGKRYIELFRSTA 363
Score = 98 (39.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 316 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 372
Score = 97 (39.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 403 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 462
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 463 QKCHKKTMKDRYVEVFQCSAE 483
>UNIPROTKB|F1NWS6 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 EMBL:AADN02009154 IPI:IPI00602123
Ensembl:ENSGALT00000018869 OMA:ISTKREM Uniprot:F1NWS6
Length = 411
Score = 122 (48.0 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 147 LQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAG-RCTGVAYIQFVDKENAEKALLRHK 205
L+GLP++ ++D+ F GL I +T Y G R TG AY+QF E KALLRHK
Sbjct: 178 LRGLPFDSTEDDIADFFAGLRITD--MTFV--YRGERKTGEAYVQFAAPEMVAKALLRHK 233
Query: 206 EKIGHRLVTLVMS 218
E + +R + + +S
Sbjct: 234 EYMENRYIEVYIS 246
Score = 78 (32.5 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 34 LLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
LL D GR G+A +E S D Q+AL+++ MG RY++++
Sbjct: 110 LLNRD-GRRRGDALIELESKADVQKALEKNLRYMGTRYVKVH 150
>UNIPROTKB|H0YAM1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC021989
HGNC:HGNC:4610 ChiTaRS:GRSF1 PRIDE:H0YAM1 Ensembl:ENST00000506453
Bgee:H0YAM1 Uniprot:H0YAM1
Length = 114
Score = 89 (36.4 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 44 GEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
G+A +E S D Q+AL++H+ MG RY+E+Y
Sbjct: 4 GDALIEMESEQDVQKALEKHRMYMGQRYVEVY 35
Score = 68 (29.0 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 127 ALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKF 162
AL + V S V+ +RL+GLPY C ++D+ F
Sbjct: 44 ALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDF 79
Score = 44 (20.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 152 YECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAY 188
YE EDV+ ++ L++ + + +D R G+ Y
Sbjct: 35 YEINNEDVDALMKSLQVKSSPVV--NDGVVRLRGLPY 69
>UNIPROTKB|F1RY52 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:CU468309
Ensembl:ENSSSCT00000006690 Uniprot:F1RY52
Length = 711
Score = 135 (52.6 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 253 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 312
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 313 LQRHKHHMGTRYIEVYKATGEDFL 336
Score = 108 (43.1 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 272 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 331
Query: 79 GTSSKEANGRGT 90
G + G GT
Sbjct: 332 GEDFLKIAG-GT 342
Score = 99 (39.9 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 138 SAVDQCCMRLQGLPYECKKEDVEKFL-EGLEIV--PNGITIPHDYAGRCTGVAYIQFVDK 194
S +Q +R++GLP+ ++V F + I GI GR TG A++ F +
Sbjct: 351 SKENQVIVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 410
Query: 195 ENAEKALLRHKEKIGHRLVTLVMSGA 220
E A+ AL +HK+ +G R + L S A
Sbjct: 411 EYAQNALRKHKDLLGKRYIELFRSTA 436
Score = 98 (39.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGR 88
IL +T GR +G+A V F+ + AQ AL++HK +G RYIEL+ ++ R
Sbjct: 389 ILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 445
Score = 97 (39.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 144 CMRLQGLPYECKKEDVEKFLE--GLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
C+RL+GLPY ED+ FL +I +G+ + ++ GR +G A+IQ + A A
Sbjct: 476 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 535
Query: 202 LR-HKEKIGHRLVTLVMSGAQ 221
+ HK+ + R V + A+
Sbjct: 536 QKCHKKTMKDRYVEVFQCSAE 556
>UNIPROTKB|I3LLW0 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:CU210870 EMBL:CU914282 Ensembl:ENSSSCT00000023753
Ensembl:ENSSSCT00000028045 Uniprot:I3LLW0
Length = 955
Score = 128 (50.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F ++ + + AL R
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 513 HKQYMGNRFI 522
Score = 109 (43.4 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + N
Sbjct: 539 IRKRLQNFSYDQREMMLNPEGDVNSAKV----CAHITNIPFSVTKMDVLQFLEGIPVDEN 594
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF ++++A K+ H++K+ R
Sbjct: 595 AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 634
Score = 94 (38.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 881 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 940
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V LV+
Sbjct: 941 NDRPIGSRKVKLVL 954
Score = 91 (37.1 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 471 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 525
Score = 79 (32.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
+FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 344 EFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 396
Score = 73 (30.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 22 QFFKPIVPVN---ILLLTDDAGRSSGEADVEFSSVDDAQRA--LQRHKSNMGDRYIELYM 76
QF + I PV+ + +L D+ G+ G+A V+F + DDA+++ L R K N + ++ +
Sbjct: 584 QFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 642
Query: 77 EEGTSSKEANGRGTGGFG 94
E E N G G
Sbjct: 643 LEDMREIEKNPPAQGKKG 660
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 59 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 99
>UNIPROTKB|E5RI26 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 IPI:IPI00889667
ProteinModelPortal:E5RI26 SMR:E5RI26 Ensembl:ENST00000522756
ArrayExpress:E5RI26 Bgee:E5RI26 Uniprot:E5RI26
Length = 94
Score = 135 (52.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D +R +GLP++ +D+ +F +GL I G + + GR G A ++FV +E+ + A
Sbjct: 6 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 65
Query: 201 LLRHKEKIGHRLVTLVMSGAQWFL 224
L RHK +G R + + + + FL
Sbjct: 66 LQRHKHHMGTRYIEVYKATGEDFL 89
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FFK I L + GR +GEA V F S + ALQRHK +MG RYIE+Y
Sbjct: 25 ARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKAT 84
Query: 79 G 79
G
Sbjct: 85 G 85
>UNIPROTKB|J9NZV3 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03013911 Ensembl:ENSCAFT00000048972 Uniprot:J9NZV3
Length = 888
Score = 128 (50.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F ++ + + AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 491 HKQYMGNRFI 500
Score = 110 (43.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + N
Sbjct: 517 IRKRLQNFSYDQREMMLNPEGDVSSAKV----CAHITNIPFSITKMDVLQFLEGIPVDEN 572
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF ++++A K+ H++K+ R
Sbjct: 573 AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 91 (37.1 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 503
Score = 85 (35.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 18/82 (21%), Positives = 45/82 (54%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 807 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 866
Query: 205 KEK-IGHR--LVTLVMSGAQWF 223
++ IG R L + V++ ++ F
Sbjct: 867 NDRPIGSRVDLHSAVINASRLF 888
Score = 77 (32.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 323 FFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 37 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 77
>UNIPROTKB|Q9NTZ6 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CH471077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL109827 UniGene:Hs.700188 GermOnline:ENSG00000125976
eggNOG:NOG299235 HOVERGEN:HBG057691 EMBL:AJ289772 EMBL:AF345332
EMBL:AF345335 EMBL:AF393214 EMBL:AB018308 EMBL:AK092239
EMBL:BC012787 EMBL:BC013981 EMBL:AL834472 EMBL:AB015336
IPI:IPI00550308 RefSeq:NP_001185767.1 RefSeq:NP_001185769.1
RefSeq:NP_006038.2 RefSeq:NP_690051.1 PDB:1WEL PDB:2CPY PDB:2DNN
PDB:2EK1 PDB:2EK6 PDBsum:1WEL PDBsum:2CPY PDBsum:2DNN PDBsum:2EK1
PDBsum:2EK6 ProteinModelPortal:Q9NTZ6 SMR:Q9NTZ6 IntAct:Q9NTZ6
MINT:MINT-1366084 STRING:Q9NTZ6 PhosphoSite:Q9NTZ6 DMDM:30173387
PaxDb:Q9NTZ6 PeptideAtlas:Q9NTZ6 PRIDE:Q9NTZ6 DNASU:10137
Ensembl:ENST00000359646 Ensembl:ENST00000374104
Ensembl:ENST00000374114 GeneID:10137 KEGG:hsa:10137 UCSC:uc002xdq.3
CTD:10137 GeneCards:GC20M034236 HGNC:HGNC:9898 HPA:HPA043258
HPA:HPA043621 MIM:607179 neXtProt:NX_Q9NTZ6 PharmGKB:PA34261
InParanoid:Q9NTZ6 OMA:PVFLGPL OrthoDB:EOG44TP7C PhylomeDB:Q9NTZ6
EvolutionaryTrace:Q9NTZ6 GenomeRNAi:10137 NextBio:38349
ArrayExpress:Q9NTZ6 Bgee:Q9NTZ6 CleanEx:HS_RBM12
Genevestigator:Q9NTZ6 Uniprot:Q9NTZ6
Length = 932
Score = 128 (50.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F ++ + + AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 491 HKQYMGNRFI 500
Score = 109 (43.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + N
Sbjct: 517 IRKRLQNFSYDQREMILNPEGDVNSAKV----CAHITNIPFSITKMDVLQFLEGIPVDEN 572
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF ++++A K+ H++K+ R
Sbjct: 573 AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 94 (38.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V LV+
Sbjct: 918 NDRPIGSRKVKLVL 931
Score = 91 (37.1 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 503
Score = 77 (32.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 323 FFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Score = 73 (30.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 22 QFFKPIVPVN---ILLLTDDAGRSSGEADVEFSSVDDAQRA--LQRHKSNMGDRYIELYM 76
QF + I PV+ + +L D+ G+ G+A V+F + DDA+++ L R K N + ++ +
Sbjct: 562 QFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 620
Query: 77 EEGTSSKEANGRGTGGFG 94
E E N G G
Sbjct: 621 LEDMREIEKNPPAQGKKG 638
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 37 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 77
>UNIPROTKB|F1P982 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AAEX03013911 Ensembl:ENSCAFT00000013161
Uniprot:F1P982
Length = 945
Score = 128 (50.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F ++ + + AL R
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 513 HKQYMGNRFI 522
Score = 110 (43.8 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + N
Sbjct: 539 IRKRLQNFSYDQREMMLNPEGDVSSAKV----CAHITNIPFSITKMDVLQFLEGIPVDEN 594
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF ++++A K+ H++K+ R
Sbjct: 595 AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 634
Score = 94 (38.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 871 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 930
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V LV+
Sbjct: 931 NDRPIGSRKVKLVL 944
Score = 91 (37.1 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 471 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 525
Score = 77 (32.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 345 FFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 396
Score = 73 (30.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 22 QFFKPIVPVN---ILLLTDDAGRSSGEADVEFSSVDDAQRA--LQRHKSNMGDRYIELYM 76
QF + I PV+ + +L D+ G+ G+A V+F + DDA+++ L R K N + ++ +
Sbjct: 584 QFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 642
Query: 77 EEGTSSKEANGRGTGGFG 94
E E N G G
Sbjct: 643 LEDMREIEKNPPAQGKKG 660
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 59 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 99
>UNIPROTKB|F1MND5 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 CTD:10137 OMA:PVFLGPL
EMBL:DAAA02036525 IPI:IPI00924418 RefSeq:NP_001185821.1
UniGene:Bt.91136 Ensembl:ENSBTAT00000061188 GeneID:100138139
KEGG:bta:100138139 NextBio:20789665 Uniprot:F1MND5
Length = 953
Score = 128 (50.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F ++ + + AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 491 HKQYMGNRFI 500
Score = 111 (44.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + N
Sbjct: 517 IRKRLQNFSYDQREMILNPEGDVTSAKV----CAHITNIPFSITKMDVLQFLEGIPVDEN 572
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF ++++A K+ H++K+ R
Sbjct: 573 AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 94 (38.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 879 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 938
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V LV+
Sbjct: 939 NDRPIGSRKVKLVL 952
Score = 91 (37.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 503
Score = 77 (32.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 323 FFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 22 QFFKPIVPVN---ILLLTDDAGRSSGEADVEFSSVDDAQRA--LQRHKSNMGDRYIELYM 76
QF + I PV+ + +L D+ G+ G+A V+F + DDA+++ L R K N + ++ +
Sbjct: 562 QFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 620
Query: 77 EEGTSSKEANGRGTGGFGGVKSTP 100
E E N G G S P
Sbjct: 621 LEDMREIEKNPPAQGKKGLKMSVP 644
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 37 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 77
>MGI|MGI:1922960 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1922960 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL833786 UniGene:Mm.27660
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AF345334 EMBL:AF393215 EMBL:AF393216 EMBL:AK017591
EMBL:AK029180 EMBL:AK035014 EMBL:AK080772 EMBL:AK166833
EMBL:BC026891 EMBL:BC027810 EMBL:BC052473 IPI:IPI00322263
RefSeq:NP_083673.3 RefSeq:NP_733486.2 UniGene:Mm.441281 PDB:2CQP
PDBsum:2CQP ProteinModelPortal:Q8R4X3 SMR:Q8R4X3 IntAct:Q8R4X3
STRING:Q8R4X3 PhosphoSite:Q8R4X3 PRIDE:Q8R4X3
Ensembl:ENSMUST00000059647 Ensembl:ENSMUST00000109604 GeneID:75710
KEGG:mmu:75710 UCSC:uc008nmh.1 InParanoid:Q3TKT7 ChiTaRS:RBM12
EvolutionaryTrace:Q8R4X3 NextBio:343756 Bgee:Q8R4X3
CleanEx:MM_RBM12 Genevestigator:Q8R4X3
GermOnline:ENSMUSG00000038171 Uniprot:Q8R4X3
Length = 992
Score = 126 (49.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F + + + AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 491 HKQYMGNRFI 500
Score = 103 (41.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 25/100 (25%), Positives = 49/100 (49%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + +
Sbjct: 517 IRKRLQNFSYDQRELVLNPEGEVSSAKV----CAHITNIPFSITKMDVLQFLEGIPVDES 572
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF +++A K+ H++K+ R
Sbjct: 573 AVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGR 612
Score = 94 (38.1 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 918 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 977
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V LV+
Sbjct: 978 NDRPIGSRKVKLVL 991
Score = 90 (36.7 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVH 503
Score = 79 (32.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
+FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 322 EFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Score = 75 (31.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 22 QFFKPIVPVN---ILLLTDDAGRSSGEADVEFSSVDDAQRA--LQRHKSNMGDRYIELYM 76
QF + I PV+ + +L D+ G+ G+A V+F + DDA ++ L R K N + ++ +
Sbjct: 562 QFLEGI-PVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVT 620
Query: 77 EEGTSSKEANGRGTGGFGGVKSTP 100
E E N G G S P
Sbjct: 621 LEDMREIEKNPPAQGKKGLKISVP 644
Score = 39 (18.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 37 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 77
>UNIPROTKB|D4A116 [details] [associations]
symbol:Rbm12 "Protein Rbm12" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC118414 IPI:IPI00560597 Ensembl:ENSRNOT00000026700
ArrayExpress:D4A116 Uniprot:D4A116
Length = 1003
Score = 126 (49.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F + + + AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 491 HKQYMGNRFI 500
Score = 109 (43.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + N
Sbjct: 517 IRKRLQNFSYDQREMVLNPEGEVSSAKV----CAHITNIPFSITKMDVLQFLEGIPVDEN 572
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF +++A K+ H++K+ R
Sbjct: 573 AVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGR 612
Score = 94 (38.1 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 929 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 988
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V LV+
Sbjct: 989 NDRPIGSRKVKLVL 1002
Score = 90 (36.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVH 503
Score = 79 (32.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
+FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 322 EFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Score = 73 (30.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 22 QFFKPIVPVN---ILLLTDDAGRSSGEADVEFSSVDDAQRA--LQRHKSNMGDRYIELYM 76
QF + I PV+ + +L D+ G+ G+A V+F + DDA ++ L R K N + ++ +
Sbjct: 562 QFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVT 620
Query: 77 EEGTSSKEANGRGTGGFG 94
E E N G G
Sbjct: 621 LEDMREIEKNPPAQGKKG 638
Score = 39 (18.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 37 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 77
>FB|FBgn0023441 [details] [associations]
symbol:fus "fusilli" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007173 "epidermal
growth factor receptor signaling pathway" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0005634
GO:GO:0007173 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 HSSP:P55795 EMBL:AF321979
EMBL:BT025963 EMBL:BT003299 EMBL:BT023793 EMBL:AY052064
RefSeq:NP_524691.1 RefSeq:NP_725479.1 RefSeq:NP_725480.1
RefSeq:NP_725481.1 RefSeq:NP_725482.1 RefSeq:NP_725483.1
UniGene:Dm.7727 ProteinModelPortal:Q9BJZ5 SMR:Q9BJZ5
MINT:MINT-1023688 STRING:Q9BJZ5 PRIDE:Q9BJZ5
EnsemblMetazoa:FBtr0087343 EnsemblMetazoa:FBtr0087344
EnsemblMetazoa:FBtr0087346 GeneID:44095 KEGG:dme:Dmel_CG8205
UCSC:CG8205-RD CTD:2521 FlyBase:FBgn0023441 InParanoid:A1ZA30
OMA:KFRYIEV OrthoDB:EOG4866TJ PhylomeDB:Q9BJZ5 ChiTaRS:FUS
GenomeRNAi:44095 NextBio:836730 Bgee:Q9BJZ5 Uniprot:Q9BJZ5
Length = 967
Score = 148 (57.2 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 140 VD-QCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAE 198
VD C +R +GLP++ +D+ KF GL + G+ + GR G A I+FV +E+ +
Sbjct: 275 VDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRD 334
Query: 199 KALLRHKEKIGHRLVTLVMSGAQWFLS 225
AL RHK IG R + + + + FL+
Sbjct: 335 MALKRHKHHIGTRYIEVYRASGEDFLA 361
Score = 111 (44.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 133 AVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVP-------NGITIPHDYAGRCTG 185
A LS A Q +R++GLPY+ + V F + P G+ GR TG
Sbjct: 372 AFLSKGA--QVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATG 429
Query: 186 VAYIQFVDKENAEKALLRHKEKIGHRLVTLVMS 218
A++ F ++ +A KAL RH+E IG R + L S
Sbjct: 430 DAFVLFANETDAPKALGRHRESIGQRYIELFRS 462
Score = 99 (39.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
+L + GR++G+A V F++ DA +AL RH+ ++G RYIEL+
Sbjct: 417 VLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELF 460
Score = 95 (38.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 21 SQFFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE 78
++FF+ + + L GR +GEA + F + AL+RHK ++G RYIE+Y
Sbjct: 296 AKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRAS 355
Query: 79 G 79
G
Sbjct: 356 G 356
Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 128 LKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGL--EIVPNGITIPHDYAGRCTG 185
L Q + SG+ + C+RL+GLPYE E + FL+ I+ G+ + + G+ +G
Sbjct: 533 LPTQHLITSGTTKN--CIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSG 590
Query: 186 VAYIQFVDKENAEK-ALLRH 204
A+IQ +E+A A RH
Sbjct: 591 EAFIQMDLEESARLCAQRRH 610
>RGD|1594333 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH474050 eggNOG:NOG299235
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AC118414 EMBL:AY226099 IPI:IPI00421433
RefSeq:NP_001032746.1 UniGene:Rn.7119 SMR:Q6XLI7
Ensembl:ENSRNOT00000047246 GeneID:652928 KEGG:rno:652928
UCSC:RGD:1594333 HOGENOM:HOG000143525 InParanoid:Q6XLI7
NextBio:714873 Genevestigator:Q6XLI7 Uniprot:Q6XLI7
Length = 1032
Score = 126 (49.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F + + + AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 204 HKEKIGHRLV 213
HK+ +G+R +
Sbjct: 491 HKQYMGNRFI 500
Score = 109 (43.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 112 LAKWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPN 171
+ K ++ + + L +G V S C + +P+ K DV +FLEG+ + N
Sbjct: 517 IRKRLQNFSYDQREMVLNPEGEVSSAKV----CAHITNIPFSITKMDVLQFLEGIPVDEN 572
Query: 172 GITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKIGHR 211
+ + D G+ G A +QF +++A K+ H++K+ R
Sbjct: 573 AVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGR 612
Score = 94 (38.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 958 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 1017
Query: 205 KEK-IGHRLVTLVM 217
++ IG R V LV+
Sbjct: 1018 NDRPIGSRKVKLVL 1031
Score = 90 (36.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G+++GE VEF + D + AL RHK MG+R+I+++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVH 503
Score = 79 (32.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
+FF + + LL D GR++G V+F S D AL+R++ M RY+E+
Sbjct: 322 EFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Score = 73 (30.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 22 QFFKPIVPVN---ILLLTDDAGRSSGEADVEFSSVDDAQRA--LQRHKSNMGDRYIELYM 76
QF + I PV+ + +L D+ G+ G+A V+F + DDA ++ L R K N + ++ +
Sbjct: 562 QFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVT 620
Query: 77 EEGTSSKEANGRGTGGFG 94
E E N G G
Sbjct: 621 LEDMREIEKNPPAQGKKG 638
Score = 39 (18.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
G GEA + F++ +DA+ + R + + L + T
Sbjct: 37 GGELGEAFIVFATDEDARLGMMRTGGTIKGSKVTLLLSSKT 77
>UNIPROTKB|F1NNR6 [details] [associations]
symbol:LOC100858337 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AADN02019509 EMBL:AADN02019510 IPI:IPI00571732
Ensembl:ENSGALT00000002400 Uniprot:F1NNR6
Length = 868
Score = 155 (59.6 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 56/193 (29%), Positives = 92/193 (47%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81
+FF + I +L D GR++G V+F S D AL+R++ M RY+E+ +
Sbjct: 322 EFFLGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRMLMIQRYVEV-----SP 376
Query: 82 SKEANGRGTGGFGGVKSTPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQGAVLSGSAVD 141
+ E GG K T G Q + RS+ KR S S +
Sbjct: 377 ATERQWVAAGGHITFKQTMGPSG-----QPHPPPPQPHSRSKSPSGQKRSR---SRSPHE 428
Query: 142 Q-CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
Q C+ L+GLP+E + + V F + L+IV + I I + G+ G +++F ++ + + A
Sbjct: 429 QGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAA 488
Query: 201 LLRHKEKIGHRLV 213
L HK+ IG+R +
Sbjct: 489 LCHHKQYIGNRFI 501
Score = 119 (46.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 136 SGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKE 195
SGS + C + +PY K ++ +FLEGL + N + I D G+ G A +QF ++
Sbjct: 540 SGSP--KLCAHISNIPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAED 597
Query: 196 NAEKALLRHKEKIGHRLVTL 215
+A KA H++K+ R V L
Sbjct: 598 DARKAERLHRKKLNGRDVVL 617
Score = 79 (32.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 23 FFKP--IVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
FFK IV +I + G++ GE VEF + D + AL HK +G+R+I+++
Sbjct: 450 FFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVH 504
>UNIPROTKB|G3MYE8 [details] [associations]
symbol:G3MYE8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02039421 Ensembl:ENSBTAT00000065600 OMA:EVPRRIM
Uniprot:G3MYE8
Length = 248
Score = 144 (55.7 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ P+ + + GR++GEADVEF + +DA A+ + K+NM RYIEL++
Sbjct: 114 ANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 173
Query: 81 SSKEA-NGRGTGGFG 94
G G GG+G
Sbjct: 174 GGASGMGGSGMGGYG 188
>UNIPROTKB|B4DHY1 [details] [associations]
symbol:HNRNPH3 "cDNA FLJ57726, highly similar to
Heterogeneous nuclear ribonucleoprotein H3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
UniGene:Hs.643472 HGNC:HGNC:5043 ChiTaRS:HNRNPH3 EMBL:AC016395
EMBL:AK295316 IPI:IPI00908651 SMR:B4DHY1 STRING:B4DHY1
Ensembl:ENST00000441000 UCSC:uc010qiv.2 Uniprot:B4DHY1
Length = 238
Score = 143 (55.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 21 SQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGT 80
+ FF P+ P+ + + GR++GEADVEF + +DA A+ + K+NM RYIEL++
Sbjct: 104 ANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 163
Query: 81 SSKEA-NGRGTGGFG 94
G G GG+G
Sbjct: 164 GGGSGMGGSGMGGYG 178
>UNIPROTKB|H0YBD7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YBD7 Ensembl:ENST00000523921 Bgee:H0YBD7 Uniprot:H0YBD7
Length = 195
Score = 136 (52.9 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEE--GT 80
FF P+ PV + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ G
Sbjct: 122 FFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGA 181
Query: 81 SSKEANGRGTGGFG 94
S + GG G
Sbjct: 182 SGGAYGSQMMGGMG 195
Score = 109 (43.4 bits), Expect = 0.00043, P = 0.00043
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLR 203
C+ ++GLPY + D+ F L V I I D GR TG A ++F E+A A+ +
Sbjct: 104 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD--GRVTGEADVEFATHEDAVAAMSK 161
Query: 204 HKEKIGHRLVTLVMS 218
K + HR V L ++
Sbjct: 162 DKANMQHRYVELFLN 176
>RGD|1593040 [details] [associations]
symbol:LOC679087 "similar to swan" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1593040
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 OrthoDB:EOG4NKBVV CTD:389677
IPI:IPI00765757 RefSeq:XP_001053414.1 RefSeq:XP_232819.3
ProteinModelPortal:D3ZM54 Ensembl:ENSRNOT00000061333 GeneID:313069
KEGG:rno:313069 NextBio:665610 Uniprot:D3ZM54
Length = 843
Score = 129 (50.5 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 49/199 (24%), Positives = 89/199 (44%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS-SKEANGRGTGGFGGVKS 98
G +GEA + F++ +DA+RA+ R + D +EL++ K + + + G +
Sbjct: 37 GGKAGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIDMKRSARVGRGRP 96
Query: 99 TPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQ-GAVLSGSAVD------------QCCM 145
P G+ + F+ + S A+ G ++G+ +D +
Sbjct: 97 GPEASGVGNMYHFIDALKEEERYSGYGSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYL 156
Query: 146 RLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHK 205
L+GLPY ++DV F GL + +G+ + + GR G A ++F +A L H+
Sbjct: 157 FLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHR 214
Query: 206 EKIGHRLVTLVMSGA--QW 222
+G R + VM G+ QW
Sbjct: 215 SFMGSRFIE-VMQGSEQQW 232
Score = 107 (42.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF + ++LL GR++G+A V+F+S DA L+ H+S MG R+IE+ +G+
Sbjct: 173 FFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM--QGSEQ 230
Query: 83 KEANGRGTGGFGG 95
+ GT GG
Sbjct: 231 QWIEFGGTASKGG 243
Score = 88 (36.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 137 GSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKEN 196
GS + C+ ++ LP++ K +V+KF +V + I + D G G A ++F +E
Sbjct: 396 GSG-QKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFKSEEQ 454
Query: 197 AEKALLRHKEK-IGHRLVTLVMSGAQ 221
A KA ++++ +G ++ ++S Q
Sbjct: 455 AMKAERLNRQRFLGTEVLLRLISEEQ 480
Score = 64 (27.6 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 147 LQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKE 206
+ LP++ ++ F G +++P+ ++I ++ G G A + + A A+
Sbjct: 771 ISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAAVKDLSG 830
Query: 207 K-IGHRLVTL 215
+ +G R V L
Sbjct: 831 RPVGPRKVKL 840
>MGI|MGI:1924854 [details] [associations]
symbol:Rbm12b2 "RNA binding motif protein 12 B2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1924854 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
HOGENOM:HOG000231575 HOVERGEN:HBG057691 OrthoDB:EOG4NKBVV
EMBL:AK080943 EMBL:AK169895 EMBL:AL772167 EMBL:BC030408
EMBL:BC080741 IPI:IPI00471450 IPI:IPI00828825 RefSeq:NP_945195.1
UniGene:Mm.474129 UniGene:Mm.483494 ProteinModelPortal:Q66JV4
SMR:Q66JV4 STRING:Q66JV4 PhosphoSite:Q66JV4 PRIDE:Q66JV4
Ensembl:ENSMUST00000063839 Ensembl:ENSMUST00000095143 GeneID:77604
KEGG:mmu:77604 UCSC:uc008san.2 CTD:77604 InParanoid:A2AJP4
NextBio:347196 Bgee:Q66JV4 CleanEx:MM_C430048L16RIK
Genevestigator:Q66JV4 Uniprot:Q66JV4
Length = 834
Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
Identities = 52/199 (26%), Positives = 84/199 (42%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS-SKEANGRGTG--GFGGV 96
G GEA + F++ +DA+RA+ R + D +EL++ K + T G G
Sbjct: 37 GGKVGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRP 96
Query: 97 KSTPYGVG-IFCISQFLAK---WMRRAKRSEMDWALKRQGAVLS-------GSAVDQCCM 145
S GVG ++ S L + + D G L + +
Sbjct: 97 GSGASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYL 156
Query: 146 RLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHK 205
L+GLPY ++DV F GL + +G+ + + GR G A ++F +A L H+
Sbjct: 157 FLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHR 214
Query: 206 EKIGHRLVTLVMSGA--QW 222
+G R + VM G+ QW
Sbjct: 215 SFMGSRFIE-VMQGSEQQW 232
Score = 106 (42.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF + ++LL GR++G+A V+F+S DA L+ H+S MG R+IE+ +G+
Sbjct: 173 FFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM--QGSEQ 230
Query: 83 KEANGRGTGGFGGVKSTP 100
+ GT GG TP
Sbjct: 231 QWIEFGGTATEGG--DTP 246
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 136 SGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKE 195
SGS + C+ ++ LP++ K +V+KF +V + I + D G G A ++F +E
Sbjct: 395 SGSG-QKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEE 453
Query: 196 NAEKALLRHKEK-IGHRLVTLVMSGAQ 221
A KA ++++ +G ++ ++S Q
Sbjct: 454 QAMKAERLNRQRFLGIEVLLRLISEEQ 480
Score = 66 (28.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 147 LQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKE 206
+ LP++ ++ F G +++P+ ++I ++ G G A + + A A+
Sbjct: 762 ISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVKDLSG 821
Query: 207 K-IGHRLVTL 215
+ +G R V L
Sbjct: 822 RPVGPRKVKL 831
>MGI|MGI:1919647 [details] [associations]
symbol:Rbm12b1 "RNA binding motif protein 12 B1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919647 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL929413 EMBL:AK013872 EMBL:AK031339 EMBL:BC050844
EMBL:BC054081 IPI:IPI00134417 RefSeq:NP_082502.2 UniGene:Mm.430709
UniGene:Mm.490798 ProteinModelPortal:Q80YR9 SMR:Q80YR9
STRING:Q80YR9 PhosphoSite:Q80YR9 PRIDE:Q80YR9
Ensembl:ENSMUST00000050069 Ensembl:ENSMUST00000069128 GeneID:72397
KEGG:mmu:72397 UCSC:uc008sam.1 CTD:72397 HOGENOM:HOG000231575
HOVERGEN:HBG057691 InParanoid:B1AZ74 OMA:EHFRRPP OrthoDB:EOG4NKBVV
NextBio:336186 Bgee:Q80YR9 Genevestigator:Q80YR9 Uniprot:Q80YR9
Length = 836
Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
Identities = 52/199 (26%), Positives = 84/199 (42%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS-SKEANGRGTG--GFGGV 96
G GEA + F++ +DA+RA+ R + D +EL++ K + T G G
Sbjct: 37 GGKVGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRP 96
Query: 97 KSTPYGVG-IFCISQFLAK---WMRRAKRSEMDWALKRQGAVLS-------GSAVDQCCM 145
S GVG ++ S L + + D G L + +
Sbjct: 97 GSGASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYL 156
Query: 146 RLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHK 205
L+GLPY ++DV F GL + +G+ + + GR G A ++F +A L H+
Sbjct: 157 FLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHR 214
Query: 206 EKIGHRLVTLVMSGA--QW 222
+G R + VM G+ QW
Sbjct: 215 SFMGSRFIE-VMQGSEQQW 232
Score = 106 (42.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF + ++LL GR++G+A V+F+S DA L+ H+S MG R+IE+ +G+
Sbjct: 173 FFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM--QGSEQ 230
Query: 83 KEANGRGTGGFGGVKSTP 100
+ GT GG TP
Sbjct: 231 QWIEFGGTATEGG--DTP 246
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 136 SGSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKE 195
SGS + C+ ++ LP++ K +V+KF +V + I + D G G A ++F +E
Sbjct: 395 SGSG-QKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEE 453
Query: 196 NAEKALLRHKEK-IGHRLVTLVMSGAQ 221
A KA ++++ +G ++ ++S Q
Sbjct: 454 QAMKAERLNRQRFLGIEVLLRLISEEQ 480
Score = 65 (27.9 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++ LP++ ++ F G +++P+ +++ ++ G G A + + A A+
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVKDL 821
Query: 205 KEK-IGHRLVTL 215
+ +G R V L
Sbjct: 822 SGRPVGPRKVKL 833
>RGD|1310858 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 CTD:2926 eggNOG:NOG319259
HOGENOM:HOG000220896 OrthoDB:EOG4XPQGW IPI:IPI00364208
EMBL:BC103654 RefSeq:NP_001094360.1 UniGene:Rn.66912 GeneID:305256
KEGG:rno:305256 UCSC:RGD:1310858 InParanoid:Q3SYP9 NextBio:654276
ArrayExpress:Q3SYP9 Genevestigator:Q3SYP9 Uniprot:Q3SYP9
Length = 142
Score = 119 (46.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSS 82
FF P+ PV I + +G+++GEADV F + +DA A+ + +S++ RYIEL++
Sbjct: 82 FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKG 141
Query: 83 K 83
K
Sbjct: 142 K 142
Score = 104 (41.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 21/74 (28%), Positives = 42/74 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ ++GLP++ +D+ F L+ P IT+ + +G+ TG A + F E+A A+L+
Sbjct: 65 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 122
Query: 205 KEKIGHRLVTLVMS 218
+ + HR + L ++
Sbjct: 123 RSHVQHRYIELFLN 136
>UNIPROTKB|E7EQJ0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00977852
ProteinModelPortal:E7EQJ0 SMR:E7EQJ0 Ensembl:ENST00000521116
ArrayExpress:E7EQJ0 Bgee:E7EQJ0 Uniprot:E7EQJ0
Length = 115
Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
Score = 90 (36.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELY 75
GR SGEA VE S D+ + AL++ + MG RY+E++
Sbjct: 51 GRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 118 RAKRSEMDWALKRQG 132
++ EMDW LK G
Sbjct: 87 KSNNVEMDWVLKHTG 101
>UNIPROTKB|E1B7G5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:DAAA02039473 IPI:IPI00687016
RefSeq:XP_002692866.1 RefSeq:XP_881008.3 Ensembl:ENSBTAT00000017837
GeneID:506017 KEGG:bta:506017 NextBio:20867413 Uniprot:E1B7G5
Length = 984
Score = 117 (46.2 bits), Expect = 0.00098, P = 0.00098
Identities = 54/224 (24%), Positives = 91/224 (40%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME-EGTSSKEANGRGTGGFGGVKS 98
G GEA + F++ +DA+RA+ R + D +EL++ + K + T G +
Sbjct: 37 GGEIGEAFIIFATDEDARRAVSRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRMGRERP 96
Query: 99 TPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQ-GAVLSGSA-------------VDQCC 144
G+ +S F+ S + + G +G+ +
Sbjct: 97 GSGASGVGSLSNFVEAIKEEGSNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPY 156
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ L+GLPY ++DV F GL + +G+ + GR G A ++F +A L H
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 205 KEKIGHRLVTLVMSGA--QWF-LSPPLTNETPISRLDLTGSPVR 245
+ +G R + VM G+ QW L E IS +P R
Sbjct: 215 RSFMGSRFIE-VMQGSEKQWIDFGGNLIKEGDISMRTEEHTPPR 257
Score = 94 (38.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
FF + ++ L GR++G+A V+F+S DA L+ H+S MG R+IE+
Sbjct: 174 FFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 91 (37.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 137 GSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKEN 196
G + + C+ ++ P++ K +V+KF + + I + +D G G A ++F +E
Sbjct: 394 GYSGQKLCIYIRNFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQ 453
Query: 197 AEKA-LLRHKEKIGHRLVTLVMSGAQ 221
A KA L + +G ++ ++S AQ
Sbjct: 454 AVKAERLNRRRFLGTEVLLRLISEAQ 479
Score = 86 (35.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 17/74 (22%), Positives = 39/74 (52%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++ LP++ ++ F G I+P+ ++I ++ G TG A + ++ A A+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 969
Query: 205 KEK-IGHRLVTLVM 217
++ +G R V L++
Sbjct: 970 NDRPVGPRKVKLIL 983
>UNIPROTKB|F1RY40 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:CU633952 RefSeq:XP_003125614.1
UniGene:Ssc.32661 Ensembl:ENSSSCT00000006702 GeneID:100514101
KEGG:ssc:100514101 Uniprot:F1RY40
Length = 986
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 49/200 (24%), Positives = 85/200 (42%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME-EGTSSKEANGRGTGGFGGVKS 98
G GEA + F++ +DA+RA+ R + D +EL++ + K + T G +
Sbjct: 37 GGEVGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRMGRDRP 96
Query: 99 TPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQ-GAVLSGSA-------------VDQCC 144
G+ +S F+ A S + + G +G+ +
Sbjct: 97 GSGAPGVGSLSNFVEALKEEASNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPY 156
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ L+GLPY ++DV F GL + +G+ + GR G A ++F +A L H
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 205 KEKIGHRLVTLVMSGA--QW 222
+ +G R + VM G+ QW
Sbjct: 215 RSFMGSRFIE-VMQGSEQQW 233
Score = 94 (38.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
FF + ++ L GR++G+A V+F+S DA L+ H+S MG R+IE+
Sbjct: 174 FFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 86 (35.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 137 GSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKEN 196
G + + C+ ++ P++ K +V+KF + + I + +D G G A ++F +E
Sbjct: 394 GYSGQKLCIYIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQ 453
Query: 197 AEKA-LLRHKEKIGHRLVTLVMSGAQ 221
A KA L + +G ++ ++S Q
Sbjct: 454 AMKAERLNRRRFLGTEVLLRLISEVQ 479
Score = 85 (35.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 16/74 (21%), Positives = 39/74 (52%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++ LP++ ++ F G ++P+ ++I ++ G TG A + ++ A A+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 205 KEK-IGHRLVTLVM 217
++ +G R V L++
Sbjct: 972 NDRPVGPRKVKLIL 985
>UNIPROTKB|D6RAM1 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967835
ProteinModelPortal:D6RAM1 SMR:D6RAM1 Ensembl:ENST00000515158
ArrayExpress:D6RAM1 Bgee:D6RAM1 Uniprot:D6RAM1
Length = 130
Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
>UNIPROTKB|E2RRS5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:AAEX03015951 RefSeq:XP_544177.3
Ensembl:ENSCAFT00000014490 GeneID:487048 KEGG:cfa:487048
NextBio:20860720 Uniprot:E2RRS5
Length = 994
Score = 120 (47.3 bits), Expect = 0.00046, P = 0.00046
Identities = 50/200 (25%), Positives = 84/200 (42%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME-EGTSSKEANGRGTGGFGGVKS 98
G GEA + F++ +DA+RA+ R + D +EL++ + K R T G +
Sbjct: 37 GGEIGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMRRTDRIGRERP 96
Query: 99 TPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQ-GAVLSGSA-------------VDQCC 144
G +S F+ A S + + G +G+ +
Sbjct: 97 GSGASGAGSLSNFVEAIKEEASNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPY 156
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ L+GLPY ++DV F GL + +G+ + GR G A ++F +A L H
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 205 KEKIGHRLVTLVMSGA--QW 222
+ +G R + VM G+ QW
Sbjct: 215 RSFMGSRFIE-VMQGSEQQW 233
Score = 94 (38.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 23 FFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
FF + ++ L GR++G+A V+F+S DA L+ H+S MG R+IE+
Sbjct: 174 FFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 84 (34.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 144 CMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA-LL 202
C+ ++ P++ K +V+KF + + I + +D G G A ++F +E A KA L
Sbjct: 401 CIYIRNFPFDVTKVEVQKFFADFSLGEDDIYLLYDDKGVGLGEALVKFKTEEQAVKAERL 460
Query: 203 RHKEKIGHRLVTLVMSGAQ 221
+ +G ++ ++S AQ
Sbjct: 461 NRRRFLGTEVLLRLISEAQ 479
Score = 81 (33.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+++ LP++ ++ F G I+P+ ++I ++ G TG A + ++ A A+
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 979
Query: 205 KEK-IGHRLVTLVM 217
++ +G R V L +
Sbjct: 980 NDRPVGPRKVKLTL 993
>UNIPROTKB|D6RDL0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HOGENOM:HOG000220896 HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964237
ProteinModelPortal:D6RDL0 SMR:D6RDL0 Ensembl:ENST00000515714
ArrayExpress:D6RDL0 Bgee:D6RDL0 Uniprot:D6RDL0
Length = 84
Score = 104 (41.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLV 213
+ +E +GHR V
Sbjct: 73 KDRETMGHRYV 83
>UNIPROTKB|B9ZVT1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010834 HOGENOM:HOG000231575
HGNC:HGNC:32310 IPI:IPI00217626 ProteinModelPortal:B9ZVT1
SMR:B9ZVT1 PRIDE:B9ZVT1 Ensembl:ENST00000517700 ArrayExpress:B9ZVT1
Bgee:B9ZVT1 Uniprot:B9ZVT1
Length = 881
Score = 122 (48.0 bits), Expect = 0.00024, P = 0.00024
Identities = 49/200 (24%), Positives = 86/200 (43%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME-EGTSSKEANGRGTGGFGGVKS 98
G GEA + F++ +DA+RA+ R + D +EL++ + K + T G +
Sbjct: 37 GGEIGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
Query: 99 TPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQ-GAVLSGSA-------------VDQCC 144
G+ +S F+ A S ++ + G +G+ +
Sbjct: 97 GSGTSGVDSLSNFIESVKEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY 156
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ L+GLPY ++DV F GL + +G+ + GR G A ++F +A L H
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 205 KEKIGHRLVTLVMSGA--QW 222
+ +G R + VM G+ QW
Sbjct: 215 RSFMGSRFIE-VMQGSEQQW 233
>UNIPROTKB|H0YAQ2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
Ensembl:ENST00000519958 Bgee:H0YAQ2 Uniprot:H0YAQ2
Length = 131
Score = 96 (38.9 bits), Expect = 0.00024, P = 0.00024
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 118 RAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEGL-------EIVP 170
++ EMDW LK G +A D +RL+GLP+ C KE++ +F G+ E+
Sbjct: 34 KSNNVEMDWVLKHTGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGILKSLRAVELKL 92
Query: 171 NGITIPHDYAGRCTG 185
I I H+ C+G
Sbjct: 93 ELIMIHHESLWPCSG 107
>UNIPROTKB|Q8IXT5 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG299235 EMBL:AC010834 HOGENOM:HOG000231575
HOVERGEN:HBG057691 OMA:EHFRRPP OrthoDB:EOG4NKBVV IPI:IPI00871780
RefSeq:NP_976324.2 UniGene:Hs.606916 HSSP:Q9NTZ6
ProteinModelPortal:Q8IXT5 SMR:Q8IXT5 IntAct:Q8IXT5 STRING:Q8IXT5
PhosphoSite:Q8IXT5 DMDM:215273872 PaxDb:Q8IXT5 PRIDE:Q8IXT5
Ensembl:ENST00000399300 GeneID:389677 KEGG:hsa:389677
UCSC:uc003yfz.3 CTD:389677 GeneCards:GC08M094813 H-InvDB:HIX0025665
HGNC:HGNC:32310 HPA:HPA024398 neXtProt:NX_Q8IXT5
PharmGKB:PA142671098 GenomeRNAi:389677 NextBio:103029
ArrayExpress:Q8IXT5 Bgee:Q8IXT5 CleanEx:HS_RBM12B
Genevestigator:Q8IXT5 Uniprot:Q8IXT5
Length = 1001
Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
Identities = 49/200 (24%), Positives = 86/200 (43%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYME-EGTSSKEANGRGTGGFGGVKS 98
G GEA + F++ +DA+RA+ R + D +EL++ + K + T G +
Sbjct: 37 GGEIGEAFIIFATDEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
Query: 99 TPYGVGIFCISQFLAKWMRRAKRSEMDWALKRQ-GAVLSGSA-------------VDQCC 144
G+ +S F+ A S ++ + G +G+ +
Sbjct: 97 GSGTSGVDSLSNFIESVKEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY 156
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRH 204
+ L+GLPY ++DV F GL + +G+ + GR G A ++F +A L H
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 205 KEKIGHRLVTLVMSGA--QW 222
+ +G R + VM G+ QW
Sbjct: 215 RSFMGSRFIE-VMQGSEQQW 233
>UNIPROTKB|H0YBK1 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015629 "actin cytoskeleton"
evidence=IDA] InterPro:IPR012677 GO:GO:0005634 GO:GO:0000166
GO:GO:0015629 Gene3D:3.30.70.330 EMBL:AC136604 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 Ensembl:ENST00000523449 Uniprot:H0YBK1
Length = 117
Score = 83 (34.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 46 ADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
ADVEF++ +DA A+ + K+NM RY+EL++
Sbjct: 2 ADVEFATHEDAVAAMSKDKANMQHRYVELFL 32
Score = 41 (19.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 GTSSKEANGRGTGGFGGVKS 98
G +S++ +G GG+GG S
Sbjct: 78 GPASQQLSGGYGGGYGGQSS 97
>FB|FBgn0035235 [details] [associations]
symbol:CG7879 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:AE014296
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GeneTree:ENSGT00620000087828 FlyBase:FBgn0035235 RefSeq:NP_647626.1
RefSeq:NP_728631.1 UniGene:Dm.21365 SMR:Q9W0D6 IntAct:Q9W0D6
MINT:MINT-286284 EnsemblMetazoa:FBtr0072826
EnsemblMetazoa:FBtr0072827 GeneID:38184 KEGG:dme:Dmel_CG7879
UCSC:CG7879-RA InParanoid:Q9W0D6 OMA:RAEMQKV GenomeRNAi:38184
NextBio:807399 Uniprot:Q9W0D6
Length = 985
Score = 119 (46.9 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
D C +R+ G+ D+ K+ +G+ I NGI I R TGVAY++F +A+KA
Sbjct: 352 DTCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMMVNGSR-TGVAYVEFSRVSSAQKA 410
Query: 201 LLRHKEKIGHRLVTLVMSGAQWF 223
+ R+ RL+ +V G F
Sbjct: 411 VQRNNTMFRDRLIQIVPVGDDEF 433
Score = 46 (21.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 33 LLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGG 92
+ L+D GR S SS DD+ R +R + +R + + S+E + G
Sbjct: 156 ITLSDVTGRRSRSRS---SSSDDSDRERERDRQRERERGRKRRSDRLDKSQERELKMVAG 212
Query: 93 FGGVKSTPY 101
GG +P+
Sbjct: 213 -GGALPSPW 220
Score = 44 (20.5 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYM 76
G G+A + FS+ +DA+ A+ + + + + + L +
Sbjct: 37 GGEMGDAFIAFSTDEDARCAMLKDREKLMEIQVRLLL 73
>UNIPROTKB|D6R9T0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964846
ProteinModelPortal:D6R9T0 SMR:D6R9T0 Ensembl:ENST00000510431
HOGENOM:HOG000134241 ArrayExpress:D6R9T0 Bgee:D6R9T0 Uniprot:D6R9T0
Length = 162
Score = 106 (42.4 bits), Expect = 0.00035, P = 0.00035
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
>UNIPROTKB|D6RIT2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
HOGENOM:HOG000134241 IPI:IPI00966932 ProteinModelPortal:D6RIT2
SMR:D6RIT2 Ensembl:ENST00000503105 ArrayExpress:D6RIT2 Bgee:D6RIT2
Uniprot:D6RIT2
Length = 164
Score = 106 (42.4 bits), Expect = 0.00039, P = 0.00039
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 111 (44.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81
+F P+ PV I ++ + G +G V+FSS ++ ++ALQ ++ MG RYIE++ E+
Sbjct: 313 EFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIP 372
Query: 82 SKEA 85
+ +A
Sbjct: 373 TAKA 376
Score = 53 (23.7 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 147 LQGLPYECKKEDVEKFLEGLEIVPNGITIPHD-YAGRCTGVAYIQFVDKENAEKA 200
++ LPY +ED+EK + + P D + G A++ F+ E+A KA
Sbjct: 407 VRNLPYTSSEEDLEKLFSKYGPLSE-LHYPIDSLTKKPKGFAFVTFMFPEHAVKA 460
Score = 50 (22.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 21/103 (20%), Positives = 46/103 (44%)
Query: 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPN-GITIPHDYAGRCT--GVAYIQFVDKENAEK 199
C + ++ L + +E ++ + V + I+ + AG G ++++ E A+K
Sbjct: 735 CTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQK 794
Query: 200 ALLRHKEKI--GHRLVTLVMSGAQWFLSPPLTNETPISRLDLT 240
AL + + + GH+L + A +P T + ++R T
Sbjct: 795 ALKQLQGHVVDGHKLEVRISERATK-PAPTATRKKQVARKQTT 836
>UNIPROTKB|D6RDU3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00968132
ProteinModelPortal:D6RDU3 SMR:D6RDU3 Ensembl:ENST00000506721
ArrayExpress:D6RDU3 Bgee:D6RDU3 Uniprot:D6RDU3
Length = 171
Score = 106 (42.4 bits), Expect = 0.00052, P = 0.00052
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
>UNIPROTKB|D6RJ04 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00963924
ProteinModelPortal:D6RJ04 SMR:D6RJ04 Ensembl:ENST00000508103
ArrayExpress:D6RJ04 Bgee:D6RJ04 Uniprot:D6RJ04
Length = 172
Score = 106 (42.4 bits), Expect = 0.00054, P = 0.00054
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
>UNIPROTKB|D6RIH9 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00966018
ProteinModelPortal:D6RIH9 SMR:D6RIH9 Ensembl:ENST00000510678
ArrayExpress:D6RIH9 Bgee:D6RIH9 Uniprot:D6RIH9
Length = 184
Score = 106 (42.4 bits), Expect = 0.00078, P = 0.00078
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 145 MRLQGLPYECKKEDVEKFLEGLEIV--PNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
++++GLP+ C ++V++F +I GI + GR +G A+++ ++ + AL
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 203 RHKEKIGHRLVTLVMS 218
+ +E +GHR V + S
Sbjct: 73 KDRETMGHRYVEVFKS 88
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.138 0.431 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 304 294 0.00091 115 3 11 22 0.49 33
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 130
No. of states in DFA: 619 (66 KB)
Total size of DFA: 230 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.75u 0.12s 26.87t Elapsed: 00:00:02
Total cpu time: 26.77u 0.12s 26.89t Elapsed: 00:00:02
Start: Thu Aug 15 15:53:18 2013 End: Thu Aug 15 15:53:20 2013
WARNINGS ISSUED: 1