RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10467
(304 letters)
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.1 bits (124), Expect = 2e-09
Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
+ +RL+GLP+ C KE++ +F GLEIVPNG+T+P D+ GR TG A++QF +E AEKA
Sbjct: 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA 73
Query: 201 LLRHKEKIGHRLVTLVMS 218
L +HKE+IGHR + + S
Sbjct: 74 LKKHKERIGHRYIEIFKS 91
Score = 32.5 bits (73), Expect = 0.014
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 32 ILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTG 91
+ L D GRS+GEA V+F+S + A++AL++HK +G RYIE++ S A R +G
Sbjct: 46 MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK-----SSRAEVRTSG 100
Query: 92 GFGG 95
G
Sbjct: 101 PSSG 104
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 45.4 bits (107), Expect = 3e-07
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALL 202
+++Q +P+ +++ F G +++P + + ++ G TG A + F ++ A A++
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 203 -RHKEKIGHRLVTLVM 217
+ IG R V LV+
Sbjct: 70 DLNDRPIGSRKVKLVL 85
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 45.6 bits (107), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
C+ L+GLP+E + + V F + L+IV + I I + G+ TG +++F ++ + + A
Sbjct: 17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA 76
Query: 201 LLRHKEKIGHRLV 213
L RHK+ +G+R +
Sbjct: 77 LCRHKQYMGNRFI 89
Score = 39.5 bits (91), Expect = 6e-05
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 3 FSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDA-GRSSGEADVEFSSVDDAQRALQ 61
F Y+ + + F K + + + + G+++GE VEF + D + AL
Sbjct: 19 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 78
Query: 62 RHKSNMGDRYIELY 75
RHK MG+R+I+++
Sbjct: 79 RHKQYMGNRFIQVH 92
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.4 bits (104), Expect = 1e-06
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 136 SGSAVDQ---CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFV 192
SGS+ C+ ++GLPY + D+ F L + I GR TG A ++F
Sbjct: 6 SGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRV--HIEIGPDGRVTGEADVEFA 63
Query: 193 DKENAEKALLRHKEKIGHRLVTLVMS 218
E+A A+ + K + HR V L ++
Sbjct: 64 THEDAVAAMAKDKANMQHRYVELFLN 89
Score = 37.4 bits (86), Expect = 2e-04
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTS 81
FF P+ P+ + + GR +GEADVEF++ +DA A+ + K+NM RY+EL++ S
Sbjct: 34 NFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN---S 90
Query: 82 SKEANGRG 89
+ +G G
Sbjct: 91 TAGTSGSG 98
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 43.4 bits (102), Expect = 1e-06
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GL ++ +E + ++ V + + R G ++ F+D+ +K L + + ++
Sbjct: 7 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 66
Query: 209 GHRLVT 214
+ +
Sbjct: 67 DSKTID 72
Score = 33.8 bits (77), Expect = 0.003
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIE 73
RS G V F + L + + + + I+
Sbjct: 39 KRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 72
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 43.4 bits (102), Expect = 2e-06
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 149 GLPYECKKEDVEKFLEGL-EIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL--LRHK 205
+P++ + ++ + E+ + G G ++ F+ K++A+KA L H
Sbjct: 15 NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 74
Query: 206 EKIGHRLVTL 215
+ R + L
Sbjct: 75 THLYGRRLVL 84
Score = 33.4 bits (76), Expect = 0.005
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 24 FKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR--HKSNMGDRYIEL 74
F + V + G G V+F + DA++A H +++ R + L
Sbjct: 32 FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 84
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 40.0 bits (93), Expect = 2e-05
Identities = 12/66 (18%), Positives = 25/66 (37%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GL +E E + E + + + + R G ++ + E + A+ K+
Sbjct: 13 GLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 72
Query: 209 GHRLVT 214
R+V
Sbjct: 73 DGRVVE 78
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.6 bits (92), Expect = 3e-05
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GL + +E + ++ G V + + + G +I F ++E +K + + +
Sbjct: 6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 65
Query: 209 GHRLV 213
G
Sbjct: 66 GLSKC 70
Score = 29.5 bits (66), Expect = 0.099
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 46 ADVEFSSVDDAQRALQRHKSNMGDRYIE 73
+ F + ++ +++ N+G E
Sbjct: 44 CFITFKEEEPVKKIMEKKYHNVGLSKCE 71
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 40.0 bits (93), Expect = 4e-05
Identities = 12/66 (18%), Positives = 26/66 (39%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GL +E +E + + E + + + + + R G ++ F + A+ I
Sbjct: 27 GLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 86
Query: 209 GHRLVT 214
R+V
Sbjct: 87 DGRVVE 92
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 38.0 bits (88), Expect = 8e-05
Identities = 12/66 (18%), Positives = 31/66 (46%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GL ++ K+D++ + V + GR G ++ F + E+ +K + + + K+
Sbjct: 6 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 65
Query: 209 GHRLVT 214
+++
Sbjct: 66 NGKVID 71
Score = 29.2 bits (65), Expect = 0.11
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 22 QFFKPIVPVNILLLTDDAG--RSSGEADVEFSSVDDAQRALQRHKSNMGDRYIE 73
+F V L D RS G V F + + + + + + + I+
Sbjct: 18 DYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID 71
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.0 bits (88), Expect = 1e-04
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GLP++ ++D++++ V G G +++F + E K + +
Sbjct: 15 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMID 74
Query: 209 GHRL 212
G
Sbjct: 75 GRWC 78
Score = 26.9 bits (59), Expect = 1.2
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 42 SSGEADVEFSSVDDAQRALQRHKSNMGDRYIE 73
S G V F+ + + + + + R+ +
Sbjct: 49 SKGFGFVRFTEYETQVKVMS-QRHMIDGRWCD 79
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 37.6 bits (87), Expect = 2e-04
Identities = 11/65 (16%), Positives = 28/65 (43%)
Query: 137 GSAVDQCCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKEN 196
G ++ + + LP + ++ + + GR GVA++++ +E
Sbjct: 1 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Query: 197 AEKAL 201
A++A+
Sbjct: 61 AQEAI 65
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 37.3 bits (86), Expect = 2e-04
Identities = 14/73 (19%), Positives = 32/73 (43%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
L + D+E F + V + I + R G+AY++F + ++ A+ +++
Sbjct: 25 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 84
Query: 209 GHRLVTLVMSGAQ 221
+ + S A+
Sbjct: 85 LGVPIIVQASQAE 97
Score = 28.1 bits (62), Expect = 0.45
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 22 QFFKPIVPV-NILLLTD-DAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIE 73
FF + V ++ +++D ++ RS G A VEF + A+ + I
Sbjct: 37 DFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPII 90
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 36.8 bits (85), Expect = 3e-04
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL--LRHKE 206
L + + + + + + R G AY+ F +AE+AL +
Sbjct: 7 DLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV 66
Query: 207 KIGHRL 212
G +
Sbjct: 67 IKGKPV 72
Score = 28.7 bits (64), Expect = 0.21
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 22 QFFKPIVPVN--ILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIEL 74
+ F P P+ + RS G A V F DA+RAL + + + + +
Sbjct: 19 EKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 74
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 36.2 bits (83), Expect = 4e-04
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
GL EDV+ + E V + + + R G ++ F ++ EK H +I
Sbjct: 6 GLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 65
Query: 209 GHRLVT 214
+++V
Sbjct: 66 NNKMVE 71
Score = 28.9 bits (64), Expect = 0.14
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 48 VEFSSVDDAQRALQRHKSNMGDRYIE 73
V F S D ++ + H + ++ +E
Sbjct: 46 VTFESEDIVEKVCEIHFHEINNKMVE 71
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 36.5 bits (84), Expect = 6e-04
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL--LRHKE 206
LPY+ E++ + I G AY+ + D +A+ A L
Sbjct: 14 NLPYKITAEEMYDIFGKYGPI---RQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFN 70
Query: 207 KIGHRLV 213
LV
Sbjct: 71 VCNRYLV 77
Score = 27.7 bits (61), Expect = 0.85
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 40 GRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYI 72
+ G A V + + DA+ A N+ +RY+
Sbjct: 43 PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYL 76
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 35.0 bits (80), Expect = 0.001
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
GLP + V++ L + + G G A+ ++VD ++A+
Sbjct: 8 GLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Score = 26.1 bits (57), Expect = 1.8
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 41 RSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIE 73
S G A E+ ++ +A+ + +GD+ +
Sbjct: 41 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 74
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.6 bits (79), Expect = 0.002
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
+ ++++ +F G + A++ F D + A+
Sbjct: 12 RCTGDMTEDELREFFS-----QYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIK 66
Query: 209 GHRL 212
G +
Sbjct: 67 GISV 70
Score = 25.0 bits (54), Expect = 4.2
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 48 VEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGG 92
V F+ AQ G I +++ +N + G
Sbjct: 47 VTFADDQIAQSLCGEDLIIKG---ISVHISNAEPKHNSNSGPSSG 88
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 34.7 bits (79), Expect = 0.002
Identities = 11/78 (14%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 143 CCMRLQGLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCT--GVAYIQFVDKENAEKA 200
C + + G+P K+E++ + + + + + A + G A++++ A A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 201 ---LLRHKEKIGHRLVTL 215
L+ + ++ + +
Sbjct: 62 RRKLMPGRIQLWGHQIAV 79
Score = 32.0 bits (72), Expect = 0.017
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 19 LCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRA---LQRHKSNMGDRYIEL 74
++ + ++ V + D ++ G A VE+ S A A L + + I +
Sbjct: 21 EIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 79
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 34.2 bits (78), Expect = 0.003
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPH---DYAGRCTGVAYIQFVDKENAEKAL--LR 203
L + +E ++ + + + G ++++ E A+KAL L+
Sbjct: 5 NLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 64
Query: 204 HKEKIGHRL 212
GH+L
Sbjct: 65 GHTVDGHKL 73
Score = 25.8 bits (56), Expect = 2.5
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 40 GRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIEL 74
S G VE+ + AQ+AL++ + +E+
Sbjct: 40 LLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 75
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 34.4 bits (78), Expect = 0.003
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 26 PIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEA 85
P+ + +L D+ G+ G+A V+F + DDA+++ + H+ + R +++ +E
Sbjct: 33 PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREI 92
Query: 86 NGRG 89
Sbjct: 93 EKNP 96
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 32.8 bits (74), Expect = 0.006
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
GL +D+ K + + + I +C G ++ F A+KA+
Sbjct: 5 GLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 57
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.0 bits (75), Expect = 0.007
Identities = 7/53 (13%), Positives = 19/53 (35%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
L + +E + + + I G ++++ + +AE A+
Sbjct: 14 NLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 33.2 bits (75), Expect = 0.008
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
L ++ ++E + + L+ + + H G A+ QF+ +E A+K L
Sbjct: 15 NLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 32.7 bits (74), Expect = 0.009
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
GLP ++++E+ + + G GV +I+F + AE+A+
Sbjct: 13 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 32.2 bits (73), Expect = 0.010
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
L + D+++ + + +D +GR G A + F K +A KA+
Sbjct: 7 NLDFGVSDADIQELFAEFGTLKK-AAVHYDRSGRSLGTADVHFERKADALKAM 58
Score = 25.3 bits (55), Expect = 2.9
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 22 QFFKPIVP-VNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIEL 74
+ F + D +GRS G ADV F DA +A+++ + + R + +
Sbjct: 19 ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 73
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 31.6 bits (71), Expect = 0.023
Identities = 9/73 (12%), Positives = 24/73 (32%)
Query: 6 YVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQRHKS 65
Y+ T + +NI + G V F S++ A++ ++
Sbjct: 10 YIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 69
Query: 66 NMGDRYIELYMEE 78
+ + + ++
Sbjct: 70 KYKETDLLILFKD 82
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 31.5 bits (71), Expect = 0.031
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 150 LPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL 201
L Y + + + V IT A +Q+ D +A+ A
Sbjct: 15 LFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAK 62
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 31.2 bits (71), Expect = 0.039
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 234 ISRLDLTGSPVR--STICVLCHPLTPRSVRPRSVRQSEHEWWALARLGSFLISRTHQII- 290
ISR+D T VR + +LC + + R E+ W A + + + I+
Sbjct: 4 ISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFGDFSPTDVHKQYAIVF 63
Query: 291 -IPRSYHR 297
P YH+
Sbjct: 64 RTPP-YHK 70
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 28.8 bits (64), Expect = 0.20
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKALLRHKEKI 208
G P + +F + I+ +I++ K A KAL +
Sbjct: 11 GFPQASASYILLQFAQYGNIL-------KHVMSNTGNWMHIRYQSKLQARKALSKDGRIF 63
Query: 209 GHR 211
G
Sbjct: 64 GES 66
Score = 27.2 bits (60), Expect = 0.69
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 41 RSSGEADVEFSSVDDAQRALQRHKSNMGDRYI 72
+ + + S A++AL + G+ +
Sbjct: 37 NTGNWMHIRYQSKLQARKALSKDGRIFGESIM 68
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 28.9 bits (64), Expect = 0.25
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 149 GLPYECKKEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKAL--LRHKE 206
L + + + + +I P +++F + +A AL + ++
Sbjct: 15 NLSRDVTEVLILQLFS--QIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRK 72
Query: 207 KIGHRL 212
+G +
Sbjct: 73 ILGKEV 78
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 28.7 bits (64), Expect = 0.25
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 156 KEDVEKFLEGLEIVPNGITIPHDYAGRCTGVAYIQFVDKENAEKA 200
+ED+ I + GVA + F D E A+
Sbjct: 33 REDLRVECSKF----GQIRKLLLFDRHPDGVASVSFRDPEEADYC 73
Score = 25.3 bits (55), Expect = 4.0
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 31 NILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTS 81
I L G A V F ++A +Q G R I +GT+
Sbjct: 45 QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 96
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 28.5 bits (63), Expect = 0.28
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIE 73
Q F + + + + S G V F + DA RA ++ H + + R IE
Sbjct: 30 QMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 82
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.8 bits (61), Expect = 0.60
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 40 GRSSGEADVEFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGG 92
R G EF +D AL ++ ++G++ I + + +++ + + G
Sbjct: 54 ERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV--DVADQAQDKDSGPSSG 104
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 27.4 bits (60), Expect = 0.64
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 41 RSSGEADVEFSSVDDAQRALQRHKSNMGDRYIEL 74
++ A + F + D A+RALQ ++S +G+R I +
Sbjct: 46 FNNCCAFMVFENKDSAERALQMNRSLLGNREISV 79
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.6 bits (58), Expect = 1.6
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 44 GEADVEFSSVDDAQRALQR-HKSNMGDRYIEL-YMEEGTSSKEANGRGTG 91
G E+ + A A++ + R + + + +E GTG
Sbjct: 51 GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 100
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 26.6 bits (58), Expect = 1.7
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 42 SSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGTSSKEANGRG 89
G A V F + A +A R + + T KEA+ G
Sbjct: 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV--LPSTIKKEASQSG 95
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 26.7 bits (58), Expect = 1.8
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 22 QFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIELYMEEGT 80
F+ R + FS+ A A R HK+ + ++LY +
Sbjct: 29 SLFRTYDKDTTFQYFKSFKR----VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84
Query: 81 SSKEANGR 88
++
Sbjct: 85 HIGSSHLA 92
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.1 bits (57), Expect = 2.7
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 40 GRSSGEADVEFSSVDDAQRALQR-HKSNMGDRYIE 73
G+ VEF+SV D Q+A+Q +R +
Sbjct: 55 VPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVV 89
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 25.5 bits (56), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 108 ISQFLAKWMRRAKR-----SEMDWALKRQGAVLSG 137
+ + + AKR ++ +ALKRQG L G
Sbjct: 46 VIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG 80
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 25.5 bits (55), Expect = 3.0
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 24 FKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQ-RHKSNMGDRYIEL 74
F I+ ++ D G S G A + F+S D + A++ + + +R I +
Sbjct: 22 FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 73
>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
synthase MenF {Escherichia coli [TaxId: 562]}
Length = 428
Score = 27.1 bits (59), Expect = 3.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 44 GEADVEFSSVDDAQRALQRHKSNMGDRYI 72
G F+S+D AQR L++H + R
Sbjct: 67 GAIT-RFTSLDQAQRFLRQHPEHADLRIW 94
>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening
dioxygenase LigAB {Pseudomonas paucimobilis [TaxId:
13689]}
Length = 298
Score = 26.9 bits (59), Expect = 3.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 184 TGVAYIQFVDKENAEKALLRHKEKIGHRL 212
T + + +E A L K GH L
Sbjct: 270 TALGAMILQPEETAGTPLEPRKVMSGHSL 298
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 25.3 bits (54), Expect = 4.3
Identities = 11/72 (15%), Positives = 31/72 (43%)
Query: 3 FSFYVIDILIHITYCLLCSQFFKPIVPVNILLLTDDAGRSSGEADVEFSSVDDAQRALQR 62
F+ ++ ++ + + L + ++ ++ G + V+F S +D ++AL+
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALEL 73
Query: 63 HKSNMGDRYIEL 74
+ I+L
Sbjct: 74 TGLKVFGNEIKL 85
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 25.0 bits (54), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 48 VEFSSVDDAQRALQR-HKSNMGDRYIE 73
V F +VDDA+ A +R + + R I
Sbjct: 56 VYFENVDDAKEAKERANGMELDGRRIR 82
>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
[TaxId: 10891]}
Length = 666
Score = 26.4 bits (58), Expect = 5.3
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 237 LDLTGSPVRSTICVLCHPLTPRSVRPRSVRQSEHEW 272
++ S V V P P R+++ E W
Sbjct: 289 PEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATW 324
>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A
{Haemophilus ducreyi [TaxId: 730]}
Length = 167
Score = 25.5 bits (55), Expect = 6.0
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 221 QWFLSPPLTNETPIS 235
W+L+PP+ T ++
Sbjct: 153 TWYLAPPVLEATAVN 167
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex
subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId:
10090]}
Length = 161
Score = 25.5 bits (56), Expect = 6.0
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 49 EFSSVDDAQRALQRHKSNMGDRYIELYMEEGTSSKEANGRGTGGF 93
++ + +D + L R N+G R IE ++ + + R T
Sbjct: 22 DYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADV 66
>d1tmqb_ a.52.1.2 (B:) Trypsin/alpha-amylase inhibitor RBI {Eleusine
coracana, seeds [TaxId: 4511]}
Length = 117
Score = 25.3 bits (55), Expect = 6.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 141 DQCCMRLQGLPYECKKEDVEKFLEG 165
+CC +L+ +P C+ E V ++G
Sbjct: 42 ARCCRQLEAIPAYCRCEAVRILMDG 66
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 24.5 bits (53), Expect = 6.9
Identities = 2/30 (6%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 46 ADVEFSSVDDAQRALQR-HKSNMGDRYIEL 74
+ + A+ A + + + +
Sbjct: 47 GFIRLETRTLAEIAKVELDNMPLRGKQLRV 76
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 25.5 bits (55), Expect = 7.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 109 SQFLAKWMRRAKRSEMDWALKRQG 132
SQ +A + R + L++QG
Sbjct: 221 SQSIASYYERLYYPHIREMLEKQG 244
>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8)
{Common sunflower (Helianthus annuus) [TaxId: 4232]}
Length = 103
Score = 24.8 bits (54), Expect = 7.4
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 114 KWMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYECKKEDVEKFLEG 165
++ + + + + CCM+L+ L +C + L
Sbjct: 26 MYLMKNLGERSQVSPRMRE----EDHKQLCCMQLKNLDEKCMCPAIMMMLNE 73
>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus
communis) [TaxId: 3988]}
Length = 125
Score = 24.9 bits (54), Expect = 8.9
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 110 QFLAK-WMRRAKRSEMDWALKRQGAVLSGSAVDQCCMRLQGLPYEC 154
++L + RR+ E+ + + QCC +++ + EC
Sbjct: 32 RYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDEC 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,170,801
Number of extensions: 53296
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 78
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)