BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10468
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 191 SSGARIF-QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNG 249
+SG RI +LR LF SIL+Q++AFFD TRTGEL++RL++D S +S GLR G
Sbjct: 88 TSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAG 147
Query: 250 AQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEA 309
AQ + +L +VP V I G LR L++ Q+ A+A + EE
Sbjct: 148 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 207
Query: 310 ISNIRTVRAFAMEPYEVRLFTDQV 333
I N+RTVRAF E E+ + +V
Sbjct: 208 IGNVRTVRAFGKEMTEIEKYASKV 231
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 8 INIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSG 67
I++ P +LG II+++ +T + + + + L L +++ + + + L+
Sbjct: 34 ISMSAPFFLGKIIDVI--YTNPT---VDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQT 88
Query: 68 LGERIAAKLRCQLFESILKQDIAFFDSTRTGELVD 102
G+RI +LR LF SIL+Q++AFFD TRTGEL++
Sbjct: 89 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 123
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 140 MVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199
+VL LY GG LM S +T G+L SFL+ + S+ +S + +KGL +G R+++L
Sbjct: 259 IVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWEL 318
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 191 SSGARIF-QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNG 249
+SG RI +LR LF SIL+Q++AFFD TRTGEL++RL++D S +S GLR G
Sbjct: 119 TSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAG 178
Query: 250 AQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEA 309
AQ + +L +VP V I G LR L++ Q+ A+A + EE
Sbjct: 179 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 238
Query: 310 ISNIRTVRAFAMEPYEVRLFTDQV 333
I N+RTVRAF E E+ + +V
Sbjct: 239 IGNVRTVRAFGKEMTEIEKYASKV 262
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 8 INIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSG 67
I++ P +LG II+++ +T + + + + L L +++ + + + L+
Sbjct: 65 ISMSAPFFLGKIIDVI--YTNPT---VDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQT 119
Query: 68 LGERIAAKLRCQLFESILKQDIAFFDSTRTGELVD 102
G+RI +LR LF SIL+Q++AFFD TRTGEL++
Sbjct: 120 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 154
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 140 MVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199
+VL LY GG LM S +T G+L SFL+ + S+ +S + +KGL +G R+++L
Sbjct: 290 IVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWEL 349
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 185 SYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQ 244
SY SG + +R +LF ++ +AFFD TG L+ R+T D ++ SS +
Sbjct: 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALIT 145
Query: 245 GLRNGAQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVT 304
+R GA +IG ++ + PIV I+ + RS+S+ QN + T
Sbjct: 146 VVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTT 205
Query: 305 IGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQ 340
E+ + + V F + E + F D+VS LQ
Sbjct: 206 SAEQMLKGHKEVLIFGGQEVETKRF-DKVSNKMRLQ 240
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 45 LKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
L ++GL + + + + + +S + ++ +R +LF ++ +AFFD TG L+
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL 125
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 190 LSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNG 249
L++G +I ++R + F +I+ Q+I +FD GEL RLT DV + + +
Sbjct: 134 LAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193
Query: 250 AQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEA 309
A G +L I P++ +S +L S + + + AKA + EE
Sbjct: 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEV 253
Query: 310 ISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGV 345
++ IRTV AF + E+ + + + + +RLG+
Sbjct: 254 LAAIRTVIAFGGQKKELERYNNNLEEA----KRLGI 285
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 198 QLRCQLFESILKQDIAFFDSTR--TGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGA 255
+LR +F+S+L+QD+++FD + TG L RL D + K + ++ +N A +
Sbjct: 783 RLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTG 842
Query: 256 VXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRT 315
+ +L IVPI+ I+G +L + + + + + I EAI N RT
Sbjct: 843 IIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRT 902
Query: 316 VRAFAME 322
V + E
Sbjct: 903 VVSLTRE 909
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 69 GERIAAKLRCQLFESILKQDIAFFDSTR--TGEL 100
GE + +LR +F+S+L+QD+++FD + TG L
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 190 LSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNG 249
L++G +I ++R + F +I+ Q+I +FD GEL RLT DV + + +
Sbjct: 134 LAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193
Query: 250 AQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEA 309
A G +L I P++ +S +L S + + + AKA + EE
Sbjct: 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEV 253
Query: 310 ISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGV 345
++ IRTV AF + E+ + + + + +RLG+
Sbjct: 254 LAAIRTVIAFGGQKKELERYNNNLEEA----KRLGI 285
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 198 QLRCQLFESILKQDIAFFDSTR--TGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGA 255
+LR +F+S+L+QD+++FD + TG L RL D + K + ++ +N A +
Sbjct: 783 RLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTG 842
Query: 256 VXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRT 315
+ +L IVPI+ I+G +L + + + + + I EAI N RT
Sbjct: 843 IIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRT 902
Query: 316 VRAFAME 322
V + E
Sbjct: 903 VVSLTRE 909
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 69 GERIAAKLRCQLFESILKQDIAFFDSTR--TGEL 100
GE + +LR +F+S+L+QD+++FD + TG L
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 185 SYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQ 244
SY SG + +R +LF ++ ++FFD TG L+ R+T D ++ SS +
Sbjct: 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALIT 145
Query: 245 GLRNGAQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVT 304
+R GA +IG ++ + PIV I+ + R++S+ QN + T
Sbjct: 146 VVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTT 205
Query: 305 IGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQ 340
E+ + + V F + E + F D+VS LQ
Sbjct: 206 SAEQMLKGHKEVLIFGGQEVETKRF-DKVSNRMRLQ 240
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 45 LKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
L ++GL + + + + V +S + ++ +R +LF ++ ++FFD TG L+
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLL 125
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 185 SYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQ 244
SY SG + Q+R +LF + + FFD TG L+ R+T D ++ + +
Sbjct: 86 SYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVS 145
Query: 245 GLRNGAQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVT 304
+R GA +IG + ++ + P+V + +F+ R +SR Q +
Sbjct: 146 IVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTS 205
Query: 305 IGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQ 340
E+ + + V ++ + E + F D+VS S Q
Sbjct: 206 SAEQMLKGHKVVLSYGGQEVERKRF-DKVSNSMRQQ 240
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 185 SYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTR--TGELVDRLTTDVQEFKSSFKLVV 242
++ G++S + LR +LF ++L Q I FFDS + +G++ RL TDV +++
Sbjct: 815 TFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF 874
Query: 243 SQGLRNGAQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKA 302
S + ++ + ++ I+PIV G + ++ ++ A +
Sbjct: 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934
Query: 303 VTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSL 335
I EAI N+RTV+A A E F +++ +
Sbjct: 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDI 967
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 198 QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVX 257
+LR + +SIL+Q+I++FD+ +G L +L +++ K + + +Q I
Sbjct: 170 RLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFI 229
Query: 258 XXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVR 317
ML + PI + G I + + + + AKA + EE IS+IRTV
Sbjct: 230 VAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVV 289
Query: 318 AFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMF 350
+ YE+ ++ V + ++ GV G+F
Sbjct: 290 SLNGLRYELERYSTAVEEA----KKAGVLKGLF 318
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 48 VGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGEL------- 100
VG++ A + Y+ + E++ +LR + +SIL+Q+I++FD+ +G L
Sbjct: 147 VGMWAAGQITVTCYLYV----AEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDN 202
Query: 101 VDSAKPNIKNKLNPIHNHVIRMITG 125
++ K +K+ ++ + ITG
Sbjct: 203 LERVKEGTGDKIGMAFQYLSQFITG 227
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVY 61
A + FI ++ + +N+ A D F+S+ AL + L AQ + + +
Sbjct: 761 ATIGGFIYPTYSVFFTSFMNVFAGNPAD------FLSQGHFWALMFLVLAAAQGICSFLM 814
Query: 62 ISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAK-----PNIKNKLN 113
+ E + LR +LF ++L Q I FFDS + S + PN++ ++
Sbjct: 815 TFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAID 871
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Query: 177 AQMSLLF---GSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQE 233
A SLLF G + LS +F+LR +LFE + + + FFD T G+++ R+ DV
Sbjct: 88 ALTSLLFWLQGKIMLTLSQDV-VFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDN 146
Query: 234 FKSSFKLVVSQGLRNGAQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSR 293
+ + Q + GAV L IVP+ ++ + S R
Sbjct: 147 INNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFY 206
Query: 294 EAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSC 337
E Q + I EE IS + ++ F E E+ F D+V+ S
Sbjct: 207 ENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF-DRVNESL 249
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 50 LYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIK 109
+Y S+ + ++ L + + +LR +LFE + + + FFD T G+++ ++
Sbjct: 86 IYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVD 145
Query: 110 NKLNPIHNHVIRMITG 125
N N + N +I+ +G
Sbjct: 146 NINNVLGNSIIQFFSG 161
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 147 FGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199
FGG L + +T G + +F+ ++ R + ++S F L+S RIF++
Sbjct: 281 FGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEI 333
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%)
Query: 198 QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVX 257
LR LF +L I+ + T L+ RLT DV + ++ +++ +R +G +
Sbjct: 97 DLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIV 156
Query: 258 XXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVR 317
++ ++P +++ ++ L R+ Q + + E + +R VR
Sbjct: 157 MAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVR 216
Query: 318 AFAMEPYE 325
AF E YE
Sbjct: 217 AFRREEYE 224
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 186 YIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQG 245
Y+ +S ++ +R +L+ + F+ + + G+++ R+ DV++ K + G
Sbjct: 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD----FILTG 138
Query: 246 LRN----GAQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAK 301
L N +I A+ L I P I++ LR L+RE A+
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAE 198
Query: 302 AVTIGEEAISNIRTVRAFAMEPYEVRLF 329
E + I V++FA+E E + F
Sbjct: 199 VQGFLHERVQGISVVKSFAIEDNEAKNF 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,410,974
Number of Sequences: 62578
Number of extensions: 289875
Number of successful extensions: 726
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 32
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)