Query psy10468
Match_columns 365
No_of_seqs 252 out of 2372
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:58:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055|consensus 99.9 9.4E-24 2E-28 205.9 36.7 198 165-362 708-906 (1228)
2 KOG0058|consensus 99.9 1.2E-24 2.6E-29 200.8 26.1 229 3-361 157-385 (716)
3 PF00664 ABC_membrane: ABC tra 99.9 3.7E-23 7.9E-28 180.4 28.0 230 2-360 8-237 (275)
4 PRK11174 cysteine/glutathione 99.9 1.2E-20 2.6E-25 182.2 27.9 221 2-352 31-251 (588)
5 COG2274 SunT ABC-type bacterio 99.9 2E-20 4.4E-25 179.1 27.6 227 2-360 163-389 (709)
6 TIGR02857 CydD thiol reductant 99.9 3.2E-20 6.9E-25 177.0 27.6 224 2-355 12-235 (529)
7 TIGR00958 3a01208 Conjugate Tr 99.9 7.1E-20 1.5E-24 179.5 28.1 221 3-354 171-391 (711)
8 TIGR02868 CydC thiol reductant 99.9 1.1E-19 2.5E-24 173.2 27.8 225 3-358 23-248 (529)
9 PRK11160 cysteine/glutathione 99.9 1.3E-19 2.9E-24 173.7 27.9 230 3-359 26-256 (574)
10 PTZ00265 multidrug resistance 99.9 1.2E-19 2.7E-24 188.0 28.0 223 2-358 69-291 (1466)
11 TIGR01846 type_I_sec_HlyB type 99.9 1.8E-19 3.8E-24 176.9 27.7 224 3-358 149-372 (694)
12 TIGR01192 chvA glucan exporter 99.9 2.6E-19 5.6E-24 172.0 27.8 148 207-354 99-246 (585)
13 TIGR01193 bacteriocin_ABC ABC- 99.9 2.7E-19 5.8E-24 176.2 27.7 221 3-355 166-386 (708)
14 PRK10789 putative multidrug tr 99.9 5E-19 1.1E-23 169.7 28.4 223 2-354 4-227 (569)
15 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 4.6E-19 9.9E-24 173.9 27.9 224 2-357 145-368 (686)
16 TIGR02203 MsbA_lipidA lipid A 99.8 9E-19 1.9E-23 168.9 28.3 226 2-358 23-248 (571)
17 TIGR03375 type_I_sec_LssB type 99.8 6.4E-19 1.4E-23 173.1 27.4 224 2-358 156-379 (694)
18 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 8.6E-19 1.9E-23 172.7 27.6 224 3-358 164-387 (710)
19 COG4988 CydD ABC-type transpor 99.8 3.8E-18 8.1E-23 155.0 28.8 230 2-362 9-238 (559)
20 PRK11176 lipid transporter ATP 99.8 3.2E-18 7E-23 165.2 28.2 152 207-358 108-259 (582)
21 TIGR02204 MsbA_rel ABC transpo 99.8 8.8E-18 1.9E-22 162.1 28.4 221 3-354 28-248 (576)
22 PRK10790 putative multidrug tr 99.8 1.5E-17 3.2E-22 160.8 28.2 216 3-347 33-248 (592)
23 TIGR00954 3a01203 Peroxysomal 99.8 1.2E-17 2.6E-22 161.9 25.6 227 3-358 106-333 (659)
24 PRK13657 cyclic beta-1,2-gluca 99.8 2.7E-17 5.9E-22 158.7 27.8 149 207-355 99-247 (588)
25 TIGR01194 cyc_pep_trnsptr cycl 99.8 3.8E-17 8.3E-22 156.2 25.9 141 207-348 96-238 (555)
26 PTZ00265 multidrug resistance 99.8 6.3E-17 1.4E-21 168.1 28.3 226 2-358 834-1077(1466)
27 TIGR01842 type_I_sec_PrtD type 99.8 9.2E-17 2E-21 153.5 27.0 217 3-356 16-233 (544)
28 COG1132 MdlB ABC-type multidru 99.8 2E-16 4.4E-21 152.0 28.0 223 3-358 24-246 (567)
29 KOG0055|consensus 99.7 3.4E-16 7.3E-21 153.7 23.3 195 166-360 73-267 (1228)
30 PRK10522 multidrug transporter 99.7 1.8E-15 3.8E-20 144.7 26.5 141 207-349 91-234 (547)
31 TIGR00957 MRP_assoc_pro multi 99.7 1E-15 2.2E-20 160.7 25.4 138 207-344 1048-1185(1522)
32 COG4987 CydC ABC-type transpor 99.7 2.8E-14 6.1E-19 128.2 25.5 226 136-361 27-256 (573)
33 PLN03130 ABC transporter C fam 99.7 3.3E-14 7.1E-19 149.5 26.7 144 197-340 986-1129(1622)
34 KOG0054|consensus 99.7 6.8E-15 1.5E-19 147.8 20.4 187 164-350 858-1044(1381)
35 PTZ00243 ABC transporter; Prov 99.6 3.3E-14 7.1E-19 149.2 24.2 167 178-344 1012-1178(1560)
36 TIGR01271 CFTR_protein cystic 99.6 1E-13 2.2E-18 145.5 24.8 167 175-341 936-1102(1490)
37 KOG0057|consensus 99.6 4.6E-13 1E-17 120.7 22.6 224 6-358 43-269 (591)
38 PLN03232 ABC transporter C fam 99.6 2.3E-13 4.9E-18 143.0 23.9 173 169-341 955-1127(1495)
39 TIGR01271 CFTR_protein cystic 99.6 8E-13 1.7E-17 138.8 27.6 213 4-346 91-303 (1490)
40 PLN03232 ABC transporter C fam 99.6 7.9E-13 1.7E-17 139.0 26.3 140 207-350 384-526 (1495)
41 PLN03130 ABC transporter C fam 99.6 1.2E-12 2.6E-17 138.0 26.7 144 207-351 384-527 (1622)
42 TIGR00957 MRP_assoc_pro multi 99.6 1.5E-12 3.2E-17 137.2 26.8 213 4-347 328-540 (1522)
43 PTZ00243 ABC transporter; Prov 99.5 2.4E-12 5.1E-17 135.5 26.6 223 3-354 254-476 (1560)
44 KOG0056|consensus 99.5 9.1E-14 2E-18 123.2 11.2 227 5-361 227-456 (790)
45 COG4615 PvdE ABC-type sideroph 99.5 6.6E-12 1.4E-16 108.9 17.8 167 173-340 57-225 (546)
46 KOG0054|consensus 99.4 7.5E-11 1.6E-15 119.3 24.0 221 9-360 217-437 (1381)
47 COG4618 ArpD ABC-type protease 99.3 5.2E-10 1.1E-14 100.4 20.5 218 5-357 35-252 (580)
48 PF06472 ABC_membrane_2: ABC t 99.2 1.7E-08 3.6E-13 88.1 25.8 224 5-357 39-263 (281)
49 COG5265 ATM1 ABC-type transpor 99.1 2.2E-09 4.7E-14 94.3 14.7 172 187-358 5-177 (497)
50 KOG0058|consensus 99.1 9.5E-09 2.1E-13 96.5 19.4 67 132-198 377-443 (716)
51 PF13748 ABC_membrane_3: ABC t 98.8 1E-05 2.2E-10 66.5 22.2 86 217-303 92-177 (237)
52 TIGR00958 3a01208 Conjugate Tr 98.6 6E-06 1.3E-10 81.9 20.7 158 38-199 202-457 (711)
53 COG4178 ABC-type uncharacteriz 98.6 2.3E-05 4.9E-10 73.8 22.4 131 222-352 149-294 (604)
54 COG2274 SunT ABC-type bacterio 98.6 6.2E-05 1.4E-09 73.5 25.8 191 160-354 190-380 (709)
55 TIGR02868 CydC thiol reductant 98.6 5.8E-06 1.3E-10 79.3 18.4 152 43-198 59-309 (529)
56 TIGR01846 type_I_sec_HlyB type 98.5 2.2E-05 4.7E-10 77.9 20.9 68 132-199 367-434 (694)
57 COG4987 CydC ABC-type transpor 98.5 0.00034 7.4E-09 64.3 26.1 103 9-117 32-134 (573)
58 TIGR01193 bacteriocin_ABC ABC- 98.4 3.3E-05 7.3E-10 76.8 21.0 68 132-199 384-451 (708)
59 PRK10789 putative multidrug tr 98.4 1.7E-05 3.6E-10 76.8 18.4 64 136-199 230-293 (569)
60 TIGR03797 NHPM_micro_ABC2 NHPM 98.4 4.2E-05 9.1E-10 75.8 20.9 68 132-199 364-431 (686)
61 PF00664 ABC_membrane: ABC tra 98.4 0.00019 4.1E-09 62.1 22.9 100 8-117 18-117 (275)
62 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 6.2E-05 1.4E-09 74.9 21.5 155 40-198 197-448 (710)
63 TIGR01192 chvA glucan exporter 98.4 2.6E-05 5.6E-10 75.7 18.2 186 2-198 28-311 (585)
64 TIGR01194 cyc_pep_trnsptr cycl 98.4 3.2E-05 6.9E-10 74.6 18.3 181 4-200 29-308 (555)
65 TIGR03375 type_I_sec_LssB type 98.4 7.7E-05 1.7E-09 74.1 21.5 153 40-198 190-440 (694)
66 TIGR02857 CydD thiol reductant 98.4 3.7E-05 8E-10 73.8 18.4 156 40-199 47-300 (529)
67 TIGR02203 MsbA_lipidA lipid A 98.3 8E-05 1.7E-09 72.3 20.6 156 40-199 57-310 (571)
68 COG1132 MdlB ABC-type multidru 98.3 7.4E-05 1.6E-09 72.4 19.8 156 38-201 53-310 (567)
69 PRK11176 lipid transporter ATP 98.3 6.5E-05 1.4E-09 73.1 18.4 187 4-198 36-320 (582)
70 PRK12369 putative transporter; 98.3 0.0013 2.9E-08 58.4 24.8 168 6-304 30-209 (326)
71 PRK11098 microcin B17 transpor 98.3 0.001 2.2E-08 60.5 23.9 90 224-313 191-293 (409)
72 TIGR02204 MsbA_rel ABC transpo 98.2 0.00022 4.8E-09 69.3 20.5 156 40-199 61-314 (576)
73 PRK13657 cyclic beta-1,2-gluca 98.2 0.00014 3.1E-09 70.8 17.9 185 3-198 29-311 (588)
74 PRK11160 cysteine/glutathione 98.2 0.0007 1.5E-08 65.7 22.5 75 42-120 65-139 (574)
75 PRK11174 cysteine/glutathione 98.1 0.0018 3.9E-08 63.2 23.6 77 40-120 66-142 (588)
76 COG4988 CydD ABC-type transpor 98.1 0.0018 3.9E-08 60.4 21.4 180 7-198 18-296 (559)
77 PRK10790 putative multidrug tr 98.0 0.00059 1.3E-08 66.5 18.0 155 40-199 68-321 (592)
78 PRK10522 multidrug transporter 97.9 0.0095 2.1E-07 57.6 23.7 94 4-111 24-118 (547)
79 KOG0060|consensus 97.7 0.0029 6.3E-08 58.9 16.1 203 161-363 119-325 (659)
80 COG4615 PvdE ABC-type sideroph 97.6 0.056 1.2E-06 48.4 27.6 76 48-124 55-130 (546)
81 TIGR01842 type_I_sec_PrtD type 97.5 0.026 5.7E-07 54.5 20.5 66 135-200 233-298 (544)
82 KOG0064|consensus 97.3 0.13 2.9E-06 47.9 22.7 130 225-354 221-354 (728)
83 KOG0057|consensus 96.4 0.57 1.2E-05 44.0 18.0 158 38-199 75-331 (591)
84 TIGR00954 3a01203 Peroxysomal 96.2 1.6 3.4E-05 43.4 24.6 159 198-358 165-329 (659)
85 COG5265 ATM1 ABC-type transpor 95.8 0.14 3.1E-06 46.2 10.8 148 62-209 3-249 (497)
86 PF06472 ABC_membrane_2: ABC t 94.0 4 8.7E-05 35.7 22.9 144 169-314 71-216 (281)
87 KOG0056|consensus 92.0 0.58 1.3E-05 43.4 6.9 67 132-198 448-514 (790)
88 PF05992 SbmA_BacA: SbmA/BacA- 83.6 31 0.00066 30.5 23.2 73 224-296 109-194 (315)
89 COG3887 Predicted signaling pr 74.9 36 0.00079 32.8 10.1 70 245-314 14-85 (655)
90 PRK11677 hypothetical protein; 65.7 58 0.0013 24.8 8.7 18 264-281 3-20 (134)
91 PRK10733 hflB ATP-dependent me 58.8 0.97 2.1E-05 44.6 -3.5 75 267-341 7-86 (644)
92 PF13829 DUF4191: Domain of un 55.0 87 0.0019 26.3 7.7 53 260-312 47-99 (224)
93 COG3105 Uncharacterized protei 53.9 93 0.002 23.4 9.4 24 263-286 7-30 (138)
94 COG5415 Predicted integral mem 51.0 1.4E+02 0.003 24.6 13.6 70 262-331 67-137 (251)
95 PRK09458 pspB phage shock prot 50.3 74 0.0016 21.4 5.3 25 263-287 7-31 (75)
96 PHA03231 glycoprotein BALF4; P 50.2 63 0.0014 32.8 7.2 64 229-293 669-732 (829)
97 PF04246 RseC_MucC: Positive r 48.1 1.2E+02 0.0026 23.0 7.6 73 217-290 51-123 (135)
98 PF12273 RCR: Chitin synthesis 46.3 22 0.00048 26.9 2.9 21 264-284 2-22 (130)
99 PRK12369 putative transporter; 40.6 2.7E+02 0.0059 25.0 25.8 80 35-124 61-140 (326)
100 PRK04778 septation ring format 38.1 1.9E+02 0.0041 28.3 8.5 57 282-338 21-78 (569)
101 PRK09609 hypothetical protein; 37.5 3E+02 0.0064 24.5 12.9 81 261-343 77-157 (312)
102 PRK08476 F0F1 ATP synthase sub 37.4 1.5E+02 0.0033 22.7 6.3 31 261-291 4-35 (141)
103 PRK05759 F0F1 ATP synthase sub 35.7 2.1E+02 0.0045 22.2 7.3 25 263-287 4-28 (156)
104 PF00873 ACR_tran: AcrB/AcrD/A 33.2 3.4E+02 0.0074 28.9 10.1 64 224-288 316-379 (1021)
105 COG4477 EzrA Negative regulato 31.7 2.1E+02 0.0046 27.4 7.1 65 272-336 10-75 (570)
106 COG3696 Putative silver efflux 31.6 2.7E+02 0.0058 28.9 8.2 43 247-289 341-383 (1027)
107 COG4178 ABC-type uncharacteriz 30.3 5.5E+02 0.012 25.4 19.9 38 174-211 96-133 (604)
108 PF01956 DUF106: Integral memb 30.2 2.8E+02 0.006 21.9 9.2 20 268-287 17-36 (168)
109 PF06667 PspB: Phage shock pro 29.8 1.8E+02 0.0039 19.7 6.7 21 264-284 8-28 (75)
110 PRK06012 flhA flagellar biosyn 29.1 3.7E+02 0.0081 27.1 8.8 50 134-183 207-258 (697)
111 TIGR01398 FlhA flagellar biosy 29.0 3.5E+02 0.0076 27.1 8.5 49 136-184 192-242 (678)
112 PF03954 Lectin_N: Hepatic lec 28.6 2.7E+02 0.0059 21.3 7.2 59 264-322 33-91 (138)
113 COG4618 ArpD ABC-type protease 28.2 5.6E+02 0.012 24.8 15.8 68 131-198 247-314 (580)
114 PF14584 DUF4446: Protein of u 28.0 3E+02 0.0064 21.6 6.6 19 279-297 16-34 (151)
115 TIGR01399 hrcV type III secret 27.9 3.7E+02 0.0081 26.9 8.5 50 134-183 186-237 (677)
116 TIGR02976 phageshock_pspB phag 27.4 2E+02 0.0044 19.4 6.8 23 265-287 9-31 (75)
117 PRK12720 secretion system appa 27.3 2.8E+02 0.006 27.8 7.4 52 133-184 197-250 (675)
118 PF03899 ATP_synt_I: ATP synth 26.1 2.3E+02 0.005 19.7 8.0 44 250-293 9-52 (100)
119 PRK15337 type III secretion sy 26.0 3.6E+02 0.0078 27.1 8.0 49 136-184 198-248 (686)
120 PRK06531 yajC preprotein trans 25.4 95 0.0021 22.9 3.1 11 285-295 20-30 (113)
121 PRK13453 F0F1 ATP synthase sub 24.9 3.6E+02 0.0078 21.5 8.1 18 272-289 27-44 (173)
122 COG1298 FlhA Flagellar biosynt 23.5 2.4E+02 0.0053 27.9 6.2 67 219-286 259-325 (696)
123 PRK12792 flhA flagellar biosyn 22.3 4.6E+02 0.0099 26.4 7.9 50 135-184 205-256 (694)
124 PF14316 DUF4381: Domain of un 21.7 3.1E+02 0.0067 21.1 5.6 7 264-270 23-29 (146)
125 PF13260 DUF4051: Protein of u 21.2 2E+02 0.0044 17.3 5.4 26 277-302 18-43 (54)
126 COG1862 YajC Preprotein transl 20.5 2.3E+02 0.005 20.3 4.2 14 284-297 26-39 (97)
No 1
>KOG0055|consensus
Probab=99.94 E-value=9.4e-24 Score=205.91 Aligned_cols=198 Identities=23% Similarity=0.305 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccc-cCccchhhhhhhhHHHHHHHHHHHHH
Q psy10468 165 FLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDS-TRTGELVDRLTTDVQEFKSSFKLVVS 243 (365)
Q Consensus 165 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~-~~~g~l~~~~~~d~~~i~~~~~~~~~ 243 (365)
.+.+++.+......+..+++.+.....+.....++|.+.|++++++|.+|||+ +++|.+.+|+.+|..+++..+...+.
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHH
Confidence 37777888888899999999999999999999999999999999999999996 34499999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCch
Q psy10468 244 QGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEP 323 (365)
Q Consensus 244 ~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~ 323 (365)
.+++++..++..+++.++++|+++++++...|+..+......+.......+..++.++..+...|.++|+|||++++.|+
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~ 867 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEE 867 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcccc
Q psy10468 324 YEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKK 362 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (365)
++.+.|.+..++..+...+...+.+...++.+.+.++.+
T Consensus 868 ~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~ 906 (1228)
T KOG0055|consen 868 KFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVY 906 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887654
No 2
>KOG0058|consensus
Probab=99.94 E-value=1.2e-24 Score=200.84 Aligned_cols=229 Identities=36% Similarity=0.547 Sum_probs=205.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++.+..++..|.++|+++|.+..+ . +.++.....+..+.++.+.+.++..++.++..+.++++..++|.++|+
T Consensus 157 ~vss~~~~~iP~~~G~~id~~~~~-~------~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~ 229 (716)
T KOG0058|consen 157 LVSSLINMFIPYYLGKLIDTISEG-D------DSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFR 229 (716)
T ss_pred HHHHhhcchhhHHHHHHHHHHHhc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999882 1 246677778888899999999999999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
+++++|++|||++++||++||++
T Consensus 230 sil~QdiaFFD~nktGeL~SRLt--------------------------------------------------------- 252 (716)
T KOG0058|consen 230 SLLRQDIAFFDENKTGELISRLT--------------------------------------------------------- 252 (716)
T ss_pred HHHhhhhhhhccCCccHHHhhhh---------------------------------------------------------
Confidence 98888888888887777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
.|...+.+.+...+
T Consensus 253 ------------------------------------------------------------------sD~~~vs~svs~nl 266 (716)
T KOG0058|consen 253 ------------------------------------------------------------------SDTQIVSNSVSQNL 266 (716)
T ss_pred ------------------------------------------------------------------hhHHHHHHHHHHHH
Confidence 45677777788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
...+.+++..++.+++|++.+|.++++.++..|+..+....+.+..++..++.+++.++.++...|.++++||||+|+.|
T Consensus 267 s~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E 346 (716)
T KOG0058|consen 267 SDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAE 346 (716)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhccc
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGK 361 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (365)
+.+.+||.+..++..+-..|.......+....++..++.
T Consensus 347 ~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~ 385 (716)
T KOG0058|consen 347 EQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLA 385 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHH
Confidence 999999999999999999998888888877777665543
No 3
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.93 E-value=3.7e-23 Score=180.44 Aligned_cols=230 Identities=24% Similarity=0.388 Sum_probs=193.9
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++.++..+..|++++.++|.+..++.. .....+.+...+++..++.........+...+...+.++++|.+++
T Consensus 8 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 8 SILSGLLSLLFPLLLGQIIDSLSSGNSD------NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888999999999997665332 1233444444555555666677777777788889999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
+|
T Consensus 82 ~~------------------------------------------------------------------------------ 83 (275)
T PF00664_consen 82 EK------------------------------------------------------------------------------ 83 (275)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 98
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
+++.|.++|+++++|++.+++++|++.+++.+...
T Consensus 84 ---------------------------------------------~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~ 118 (275)
T PF00664_consen 84 ---------------------------------------------LLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSS 118 (275)
T ss_dssp ---------------------------------------------HHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------HHHhhhhhhhhhccccccccccccccccccccccc
Confidence 55556666666677777788888899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
+..++..+..+++.+++++.+||++++++++..++..++.....|+.++..++.+++.++..+.+.|.++|+++||++|.
T Consensus 119 ~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~ 198 (275)
T PF00664_consen 119 LFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGA 198 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcc
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNG 360 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (365)
|+++.+++++..++..+...+............+.+..+
T Consensus 199 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (275)
T PF00664_consen 199 EDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYL 237 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888877776655
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=1.2e-20 Score=182.20 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=183.2
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++.+.+.+..|+++++++|.+..++. +.+.++.++..+++..++..++.++..+...+.+.++..++|.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~id~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 103 (588)
T PRK11174 31 GFLSGLLLIAQAWLLATILQALIIENI-------PREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVL 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778889999999998763211 2233455555666777788899999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
+|++++|++||+
T Consensus 104 ~~ll~~~~~~~~-------------------------------------------------------------------- 115 (588)
T PRK11174 104 DKLQQLGPAWIQ-------------------------------------------------------------------- 115 (588)
T ss_pred HHHHhcCchhhc--------------------------------------------------------------------
Confidence 995555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
++++|++.+++++|++.+++.+...
T Consensus 116 -------------------------------------------------------~~~~g~l~s~~~~dv~~i~~~~~~~ 140 (588)
T PRK11174 116 -------------------------------------------------------GKPAGSWATLVLEQVEDMHDFYARY 140 (588)
T ss_pred -------------------------------------------------------cCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 4556666677777889999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
+..++..++.+++.++++++++|++++++++..|+..++...+.++.++..++.++..++.++.+.|.++|+++||+|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 220 (588)
T PRK11174 141 LPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNR 220 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 88999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHH
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQA 352 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (365)
|+.+.+++++..++..+...+..+.......
T Consensus 221 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 221 GEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887776665444333
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.88 E-value=2e-20 Score=179.12 Aligned_cols=227 Identities=17% Similarity=0.269 Sum_probs=206.1
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++..+++++.|++...++|.+... ...+.++.....++...+++.++..++.+...+.+.++..++-.+++
T Consensus 163 sl~l~i~~l~~p~~~q~viD~Vl~~--------~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~ 234 (709)
T COG2274 163 SLLLQLLALATPLFSQIVIDKVLPD--------ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFF 234 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3566778889999999999999875 36788999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
+|++++|+.||+++++||+++|+
T Consensus 235 ~hll~Lpl~~f~~r~~Ge~~sR~--------------------------------------------------------- 257 (709)
T COG2274 235 RHLLRLPLSYFEKRSVGEIISRV--------------------------------------------------------- 257 (709)
T ss_pred HHHHcCcHHHccCCChhhHHHHH---------------------------------------------------------
Confidence 99887777777777776666664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
+|.+++.+++...
T Consensus 258 -------------------------------------------------------------------~el~~Ir~flt~~ 270 (709)
T COG2274 258 -------------------------------------------------------------------RELEQIREFLTGS 270 (709)
T ss_pred -------------------------------------------------------------------HHHHHHHHHHHHH
Confidence 5689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
....+.+++..++.++++++++|++++++++.+|++.++.....+..++..++..+..++.++.+.|.+.|++++|+.+.
T Consensus 271 ~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~ 350 (709)
T COG2274 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAA 350 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcc
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNG 360 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (365)
|+++..+|++...+..+...+............+++..+
T Consensus 351 e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 389 (709)
T COG2274 351 EPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389 (709)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887777777766665544
No 6
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.88 E-value=3.2e-20 Score=176.98 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=185.2
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++.+++.+..|+++++++|.+..++. ..+.+..+++.+++..++..++.++..+...+.+.+..+++|.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~iid~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 84 (529)
T TIGR02857 12 GALGALLIIAQAWLLARVIDGLISAGE-------PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLL 84 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788999999999998852211 2344556666677778888899999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
++++++|.++|
T Consensus 85 ~~l~~~~~~~~--------------------------------------------------------------------- 95 (529)
T TIGR02857 85 AAVAALGPGWL--------------------------------------------------------------------- 95 (529)
T ss_pred HHHHhCCchhh---------------------------------------------------------------------
Confidence 99555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
++.++|++++++++|++.+++.+...
T Consensus 96 ------------------------------------------------------~~~~~g~~~~~l~~di~~i~~~~~~~ 121 (529)
T TIGR02857 96 ------------------------------------------------------QGRPSGELATLALEGVEALDGYFARY 121 (529)
T ss_pred ------------------------------------------------------ccCChHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666777778889999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
+..++.+++.+++.++++++++|.+++++++..|+..++.....++.++..++.++..++..+.+.|.++|+++||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 201 (529)
T TIGR02857 122 LPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGR 201 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccc
Confidence 88888998898999999999999999999988888888888888889889999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHH
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTN 355 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (365)
|+.+.++|++..++..+...+..+.......+..
T Consensus 202 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02857 202 AKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLE 235 (529)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887776665554444433
No 7
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.87 E-value=7.1e-20 Score=179.54 Aligned_cols=221 Identities=31% Similarity=0.424 Sum_probs=182.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++.++..+..|++++.++|.+..+. +.+.....+..+++..+...++.+++.++..+...++..++|.++++
T Consensus 171 ~~~~l~~~~~p~~~~~iid~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~ 242 (711)
T TIGR00958 171 TLSSLGEMFIPFYTGRVIDTLGGDK--------GPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFR 242 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999987531 22334444555556666777888888888889999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
+++++|+++|+
T Consensus 243 ~ll~~~~~~f~--------------------------------------------------------------------- 253 (711)
T TIGR00958 243 SLLRQDLGFFD--------------------------------------------------------------------- 253 (711)
T ss_pred HHHcCCHHHHc---------------------------------------------------------------------
Confidence 95555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+.++|++.+++++|++.+++.+...+
T Consensus 254 ------------------------------------------------------~~~~G~i~srl~~Di~~i~~~~~~~~ 279 (711)
T TIGR00958 254 ------------------------------------------------------ENKTGELTSRLSSDTQTMSRSLSLNV 279 (711)
T ss_pred ------------------------------------------------------CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777778889998888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
..++.+++.+++.+++++.++|++++++++..|+..++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|
T Consensus 280 ~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e 359 (711)
T TIGR00958 280 NVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAE 359 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHH
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
+.+.++|++..++..+...+............
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 360 EGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877665555444433
No 8
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.87 E-value=1.1e-19 Score=173.19 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=176.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++.++..+..|+++++++|.+.... ....+...+..+++..+...++.++..++..+...++..++|.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~id~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 94 (529)
T TIGR02868 23 ALALGSAVALLGVSAWLISRAAEMP--------PVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYD 94 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788999999999876431 10111112222334556778888999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
|++++|.+||+
T Consensus 95 ~ll~~~~~~~~--------------------------------------------------------------------- 105 (529)
T TIGR02868 95 RLARLALAGRR--------------------------------------------------------------------- 105 (529)
T ss_pred HhhccCccccc---------------------------------------------------------------------
Confidence 95555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+.++|++.+++++|++.+++.+...+
T Consensus 106 ------------------------------------------------------~~~~g~~~~~l~~d~~~i~~~~~~~~ 131 (529)
T TIGR02868 106 ------------------------------------------------------RFQTGDLLGRLGADVDALQDLYVRVI 131 (529)
T ss_pred ------------------------------------------------------cCChhhHHHHHHhhHHHHHHHHHHHH
Confidence 45566666777778899999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIG-SLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
..++.+++.+++.++++++++|.+++++++..|+..++...+. +..++..++.++..++..+.+.|.++|+++||+++.
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~ 211 (529)
T TIGR02868 132 VPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGA 211 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCC
Confidence 8899999999999999999999999999888777666654444 445666777788899999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
|+.+.++|++..++..+...+..+.......+..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (529)
T TIGR02868 212 LDPALAQVEAADRELLAAERRAARATGLGAAAQLLAA 248 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877776666555544
No 9
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=1.3e-19 Score=173.70 Aligned_cols=230 Identities=17% Similarity=0.113 Sum_probs=182.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++.....+..|.++++++|.....+... + .....++ .+..+++..+++.++.++..++.++.+.++.+++|.++++
T Consensus 26 ~~~~~~~l~~~~~~~~~id~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~ 101 (574)
T PRK11160 26 IVTLLASIGLLTLSGWFLSASAVAGLAG-L--YSFNYML-PAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFS 101 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc-h--hhHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888999999999765321100 0 0111122 2334555667788999999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
|++++|+++|
T Consensus 102 ~l~~~~~~~~---------------------------------------------------------------------- 111 (574)
T PRK11160 102 KLLPLSPAGL---------------------------------------------------------------------- 111 (574)
T ss_pred HhhccChHhh----------------------------------------------------------------------
Confidence 9555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
++.++|++++++++|++.+++.+...+
T Consensus 112 -----------------------------------------------------~~~~~g~~~srl~~Dv~~l~~~~~~~~ 138 (574)
T PRK11160 112 -----------------------------------------------------ARYRQGDLLNRLVADVDTLDHLYLRLI 138 (574)
T ss_pred -----------------------------------------------------ccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777788899999988888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH-HHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVII-SGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
..++.+++.+++.+++++++||++++++++..|+..+ ......++.++..++.++..++.++.+.|.++|++++|+|+.
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 218 (574)
T PRK11160 139 SPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGA 218 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCC
Confidence 9999999999999999999999999998877776654 456777888888899999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhc
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLN 359 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (365)
|+.+.+++++..++..+...+..+.......+..++..
T Consensus 219 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (574)
T PRK11160 219 EDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANG 256 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777766666555443
No 10
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=1.2e-19 Score=188.02 Aligned_cols=223 Identities=16% Similarity=0.168 Sum_probs=189.0
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++.+...+..|++++.++|.+..+ +.+..++..++++.++..++.+++.+++.+.++++.+++|.+++
T Consensus 69 ~~~~~~~~p~~~~i~g~iid~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~ 137 (1466)
T PTZ00265 69 ATISGGTLPFFVSVFGVIMKNMNLG-----------ENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFL 137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888899999999976432 11333445566677888899999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
++++++|++|||++++
T Consensus 138 ~~ll~~~~~~fd~~~~---------------------------------------------------------------- 153 (1466)
T PTZ00265 138 KSVFYQDGQFHDNNPG---------------------------------------------------------------- 153 (1466)
T ss_pred HHHHCCCHHHHcCCCH----------------------------------------------------------------
Confidence 9977777777776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
|++.+++++|++.++..+...
T Consensus 154 -----------------------------------------------------------~~l~s~l~~d~~~i~~~i~~~ 174 (1466)
T PTZ00265 154 -----------------------------------------------------------SKLTSDLDFYLEQVNAGIGTK 174 (1466)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 455566667788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
+..++..++.++++++++++++|++++++++..|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+|+.
T Consensus 175 ~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~ 254 (1466)
T PTZ00265 175 FITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCG 254 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
|+.+.++|++..++..+...+.....+...++..++.
T Consensus 255 e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 291 (1466)
T PTZ00265 255 EKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFI 291 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888777776655555443
No 11
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=1.8e-19 Score=176.87 Aligned_cols=224 Identities=19% Similarity=0.280 Sum_probs=186.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++..++.+..|++++.++|.+... ...+.++.++..+++..++..++.+++.+...+.+.++..++|.++++
T Consensus 149 ~~~~ll~l~~p~~~~~iid~v~~~--------~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 220 (694)
T TIGR01846 149 LALQLFALVTPLLFQVVIDKVLVH--------RGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYR 220 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788899999999998743 123446666666777778889999999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
|++++|++||++
T Consensus 221 ~l~~l~~~~f~~-------------------------------------------------------------------- 232 (694)
T TIGR01846 221 HLLGLPLGYFES-------------------------------------------------------------------- 232 (694)
T ss_pred HHHcCCHHHcCC--------------------------------------------------------------------
Confidence 955555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+++|++.+++ +|++.+++.+...+
T Consensus 233 -------------------------------------------------------~~~g~~~~rl-~d~~~i~~~~~~~~ 256 (694)
T TIGR01846 233 -------------------------------------------------------RRVGDTVARV-RELEQIRNFLTGSA 256 (694)
T ss_pred -------------------------------------------------------CCHHHHHHHh-hhHHHHHHHHHHHH
Confidence 4555666666 57888888888778
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
...+.+++..++.++++++++|++++++++..+++.++.....++.++..++..+..++.++.+.|.++|++++|++|.|
T Consensus 257 ~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e 336 (694)
T TIGR01846 257 LTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATE 336 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+.+.++|++..++..+...+..+.......+...+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 372 (694)
T TIGR01846 337 PQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQ 372 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888777766655555443
No 12
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.86 E-value=2.6e-19 Score=171.96 Aligned_cols=148 Identities=9% Similarity=0.059 Sum_probs=123.6
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
++++|+++|+++++|++++++++|++.+++.+...+...+..++.+++.+++++.++|.+++++++++|++.++...+.+
T Consensus 99 l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 178 (585)
T TIGR01192 99 IISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQ 178 (585)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555556666677777788888877777788888888888888999999999999999999999999999999
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHH
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
+.++..++..+..++..+.+.|.++|+++||++|.++.+.+++++..++..+...+..+.......+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 179 RTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888777666555544443
No 13
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.86 E-value=2.7e-19 Score=176.15 Aligned_cols=221 Identities=19% Similarity=0.219 Sum_probs=183.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++..++.+..|++++.++|.+... ...+.++.++..+++..++..++.+++.++..+.+.++..++|.++++
T Consensus 166 ~~~~~~~l~~p~~~~~iiD~v~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (708)
T TIGR01193 166 IIVTLISIAGSYYLQKIIDTYIPH--------KMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIK 237 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788899999999998754 133445666666677777888999999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
+++++|++||+++
T Consensus 238 ~ll~l~~~~f~~~------------------------------------------------------------------- 250 (708)
T TIGR01193 238 HLFELPMSFFSTR------------------------------------------------------------------- 250 (708)
T ss_pred HHHcCCHHHhCCC-------------------------------------------------------------------
Confidence 9666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
++|+++++++ |.+.+.+.+....
T Consensus 251 --------------------------------------------------------~~G~~~~r~~-~~~~i~~~~~~~~ 273 (708)
T TIGR01193 251 --------------------------------------------------------RTGEIVSRFT-DASSIIDALASTI 273 (708)
T ss_pred --------------------------------------------------------chhHHHHHhh-hHHHHHHHHHHHH
Confidence 4555556654 6778888777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
...+.+.+..++.++++++++|++++++++..|+..++...+.++.++..++..+..++.++.+.|.++|++++|++|.|
T Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 353 (708)
T TIGR01193 274 LSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSE 353 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc
Confidence 78888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHH
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTN 355 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (365)
+.+.++|++..++..+...+..........+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 354 AERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888877666555444443
No 14
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=5e-19 Score=169.70 Aligned_cols=223 Identities=21% Similarity=0.213 Sum_probs=175.7
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
.++..++.+..|++++.++|.+..+.. ....++.+++.+++..+...++.++..+...+.+.+...++|.+++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 76 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHM-------TTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFY 76 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999998765321 1223444555566666777888899999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
++++++|++||+++
T Consensus 77 ~~ll~~~~~~~~~~------------------------------------------------------------------ 90 (569)
T PRK10789 77 RQLSRQHPEFYLRH------------------------------------------------------------------ 90 (569)
T ss_pred HHHHcCCHHHHcCC------------------------------------------------------------------
Confidence 99665555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
++|++.+++++|++.++......
T Consensus 91 ---------------------------------------------------------~~g~i~srl~~Dv~~i~~~~~~~ 113 (569)
T PRK10789 91 ---------------------------------------------------------RTGDLMARATNDVDRVVFAAGEG 113 (569)
T ss_pred ---------------------------------------------------------CHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555566666777777666666
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhc
Q psy10468 242 VSQGLRNGAQVIGAVSSL-LIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFA 320 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l-~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 320 (365)
+..++..++..++.++++ ++++|++++++++..|+..++...+.++.++..++.++..++..+.+.|.++|++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~ 193 (569)
T PRK10789 114 VLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFG 193 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhc
Confidence 666776666666666555 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHH
Q psy10468 321 MEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354 (365)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
.|+.+.++|++..++..+...+..+.........
T Consensus 194 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (569)
T PRK10789 194 LEDRQSALFAADAEDTGKKNMRVARIDARFDPTI 227 (569)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888766665544433
No 15
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.85 E-value=4.6e-19 Score=173.88 Aligned_cols=224 Identities=17% Similarity=0.199 Sum_probs=188.2
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++..++.+..|++++.++|.+... .+.+.++..+..+++..++..++.+++.+...+.+.++..++|.+++
T Consensus 145 ~~~~~~~~l~~p~~~~~iid~v~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (686)
T TIGR03797 145 GLLGTLLGMLVPIATGILIGTAIPD--------ADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVW 216 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999998753 13455677777778888888999999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
+|++++|++||+++
T Consensus 217 ~~ll~~~~~~~~~~------------------------------------------------------------------ 230 (686)
T TIGR03797 217 DRLLRLPVSFFRQY------------------------------------------------------------------ 230 (686)
T ss_pred HHHHcCCHHHHCCC------------------------------------------------------------------
Confidence 99665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
++|+++++++ |++.+++.+...
T Consensus 231 ---------------------------------------------------------~~g~~~~r~~-~~~~i~~~~~~~ 252 (686)
T TIGR03797 231 ---------------------------------------------------------STGDLASRAM-GISQIRRILSGS 252 (686)
T ss_pred ---------------------------------------------------------ChhHHHHHHh-HHHHHHHHHHHH
Confidence 5555556654 577888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
+...+.+.+..+++++++++++|+++++++++.++..++.....++.++..++..+..++.++.+.|.++|++++|+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 332 (686)
T TIGR03797 253 TLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGA 332 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcc
Confidence 77888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHH
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLF 357 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (365)
|+.+.++|++..++..+...+..........+..++
T Consensus 333 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 368 (686)
T TIGR03797 333 ENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVL 368 (686)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877776665555443
No 16
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=9e-19 Score=168.85 Aligned_cols=226 Identities=26% Similarity=0.315 Sum_probs=194.1
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++.+++.+..|+.++.++|....+. ..+.++..++.+++..++..++.++..+...+.+.++..++|..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 94 (571)
T TIGR02203 23 MILVAATESTLAALLKPLLDDGFGGR--------DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMF 94 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999876531 2234555566677788888899999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
++
T Consensus 95 ~~------------------------------------------------------------------------------ 96 (571)
T TIGR02203 95 EK------------------------------------------------------------------------------ 96 (571)
T ss_pred HH------------------------------------------------------------------------------
Confidence 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
+.+.|++++++.++|++.+++++|++.+++.+...
T Consensus 97 ---------------------------------------------~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~ 131 (571)
T TIGR02203 97 ---------------------------------------------LLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDA 131 (571)
T ss_pred ---------------------------------------------HHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666677777888888899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
+..++.+++.+++.++++++++|+++++++++.++..++.....++.++..++..+..++..+.+.|.++|++++|.++.
T Consensus 132 ~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~ 211 (571)
T TIGR02203 132 FIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGG 211 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
++.+.+++++..++..+...+..+.......+..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (571)
T TIGR02203 212 QAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248 (571)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888777776666555544
No 17
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.85 E-value=6.4e-19 Score=173.09 Aligned_cols=224 Identities=16% Similarity=0.219 Sum_probs=188.6
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++..++.+..|++++.++|.+... ...+.++.++..+++..++..++.+++.++..+.+.++..++|.+++
T Consensus 156 ~~~~~l~~l~~p~~~~~iiD~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (694)
T TIGR03375 156 SLLINLLALASPLFVMNVYDRVVPN--------QAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLF 227 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999988743 12344555666666667778899999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
+|++++|++| ++
T Consensus 228 ~~ll~l~~~~-~~------------------------------------------------------------------- 239 (694)
T TIGR03375 228 ERVLGLRMEA-RP------------------------------------------------------------------- 239 (694)
T ss_pred HHHhCCCccc-CC-------------------------------------------------------------------
Confidence 9966666655 43
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
+++|++++++ +|++.+++.+...
T Consensus 240 --------------------------------------------------------~~~G~~~~r~-~d~~~i~~~~~~~ 262 (694)
T TIGR03375 240 --------------------------------------------------------ASVGSFANQL-REFESVRDFFTSA 262 (694)
T ss_pred --------------------------------------------------------CChhHHHHHH-HHHHHHHHHHhhh
Confidence 4556666666 6788999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
....+.+++.+++.++++++++|+++++.++..|+..++...+.++.++..++..+..++..+.+.|.++|++++|.++.
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 342 (694)
T TIGR03375 263 TLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNA 342 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
|+.+.++|++..++..+...+..........+...+.
T Consensus 343 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (694)
T TIGR03375 343 EGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQ 379 (694)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877776665555443
No 18
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.85 E-value=8.6e-19 Score=172.74 Aligned_cols=224 Identities=16% Similarity=0.203 Sum_probs=185.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++..++.+..|++++.++|.+.... ..+.++.++..+++..++..++.+++.+...+.+.++..++|.++++
T Consensus 164 ~~~~~~~l~~p~~~~~iid~v~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (710)
T TIGR03796 164 LLLVLPGLVIPAFSQIFVDEILVQG--------RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLW 235 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC--------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999999887542 22335555666666778888999999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
|++++|+++|+
T Consensus 236 ~ll~l~~~~~~--------------------------------------------------------------------- 246 (710)
T TIGR03796 236 HILRLPVRFFA--------------------------------------------------------------------- 246 (710)
T ss_pred HHHcCCHHHHc---------------------------------------------------------------------
Confidence 95555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
++++|++++++++| +.+++.+...+
T Consensus 247 ------------------------------------------------------~~~~g~~~~r~~~~-~~i~~~~~~~~ 271 (710)
T TIGR03796 247 ------------------------------------------------------QRHAGDIASRVQLN-DQVAEFLSGQL 271 (710)
T ss_pred ------------------------------------------------------CCcccHHHHHhhhH-HHHHHHHHHHH
Confidence 55556666666666 57888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
...+.+++.+++.++++++++|+++++.++..++..++.....++.++..++..+..++..+.+.|.++|++++|++|.|
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 351 (710)
T TIGR03796 272 ATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLE 351 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+.+.++|++..++..+...+..........+...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 387 (710)
T TIGR03796 352 SDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLT 387 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888887776666555555443
No 19
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.8e-18 Score=155.04 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=207.8
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++.+++.+...+++..+++.++.+. ..+.++++++.+++..+.+.++.+.+.....+.+.++++++|+.++
T Consensus 9 ~~l~~i~~i~qa~llA~~l~~l~~~~--------~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 9 AVLSGIAIIAQAALLADILTKLIEGQ--------LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999862 3577889999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
+|
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (559)
T COG4988 81 DK------------------------------------------------------------------------------ 82 (559)
T ss_pred HH------------------------------------------------------------------------------
Confidence 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
+.++++.+-++.++|+..+.+...++.++.++..+
T Consensus 83 ---------------------------------------------l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 83 ---------------------------------------------LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred ---------------------------------------------HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666677777778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
++++....+..+..+++++++||.-+++++++.|+..+.+..+.++.++..++......++++.+.|.++|+.|+|.|++
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~ 197 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGR 197 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcccc
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKK 362 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (365)
.+...++..+..+++++..++.-+.......+.+++.++..
T Consensus 198 ~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 198 TEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888877643
No 20
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.84 E-value=3.2e-18 Score=165.20 Aligned_cols=152 Identities=23% Similarity=0.311 Sum_probs=133.9
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
+.+.|+++|++.++|++.+++++|++.+++.+...+..++.+++.++++++++++++|++++++++.+|+..++.....+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~ 187 (582)
T PRK11176 108 MMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSK 187 (582)
T ss_pred HHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666677777788888899999988888999999999999999999999999999999999998899999999
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+.++..++.++..++..+.+.|.++|++++|.+|.++.+.++|++..++..+...+..+.......+..++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (582)
T PRK11176 188 RFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIA 259 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888777666555555543
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.82 E-value=8.8e-18 Score=162.09 Aligned_cols=221 Identities=29% Similarity=0.354 Sum_probs=179.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++.+++.+..|++++.++|.+...+ ........+..+++..++..+..++..+...+.++++..++|.++++
T Consensus 28 ~~~~~~~~~~~~~~~~iid~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 99 (576)
T TIGR02204 28 LITAAATLSLPYAVRLMIDHGFSKD--------SSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFA 99 (576)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999865431 12223334444555666677788888888889999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
+
T Consensus 100 ~------------------------------------------------------------------------------- 100 (576)
T TIGR02204 100 H------------------------------------------------------------------------------- 100 (576)
T ss_pred H-------------------------------------------------------------------------------
Confidence 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+++.|.++|++.++|++.+++++|++.+++.+...+
T Consensus 101 --------------------------------------------l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~ 136 (576)
T TIGR02204 101 --------------------------------------------LISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSL 136 (576)
T ss_pred --------------------------------------------HHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566677777888888999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
..++.+++.+++.++++++++|++++++++..|+..++.....++.++..++..+..++..+.+.|.++|++++|.++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~ 216 (576)
T TIGR02204 137 SMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHE 216 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccC
Confidence 88899999999999999999999999999988888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHH
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
+.+.++|++..++..+...+............
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (576)
T TIGR02204 217 DAERSRFGGAVEKAYEAARQRIRTRALLTAIV 248 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888777665554444433
No 22
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=1.5e-17 Score=160.79 Aligned_cols=216 Identities=16% Similarity=0.184 Sum_probs=175.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++.+++.+..|++++.++|.+...... .......++..+++..++..++.+...+...+.+.++.+++|.++++
T Consensus 33 ~~~~~~~~~~p~~~~~iid~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (592)
T PRK10790 33 WVAAAAEVSGPLLISYFIDNMVAKGNL------PLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMD 106 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788899999999987653211 11122223344555566777888999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
+
T Consensus 107 ~------------------------------------------------------------------------------- 107 (592)
T PRK10790 107 A------------------------------------------------------------------------------- 107 (592)
T ss_pred H-------------------------------------------------------------------------------
Confidence 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+++.|+++|++.++|++++++++|++.+++.+...+
T Consensus 108 --------------------------------------------l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~ 143 (592)
T PRK10790 108 --------------------------------------------ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVV 143 (592)
T ss_pred --------------------------------------------HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666777777888888999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
..++.++..+++.++++++++|+++++.+++.|+..++.....++.++..++.++..++.++.+.|.++|++++|.++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~ 223 (592)
T PRK10790 144 ATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQ 223 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhh
Confidence 99999999999999999999999999988888888888888888888888888889999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHh
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGV 347 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (365)
+.+.+++.+..++..+...+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (592)
T PRK10790 224 ARFGERMGEASRSHYMARMQTLRLD 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888766655443
No 23
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.81 E-value=1.2e-17 Score=161.90 Aligned_cols=227 Identities=14% Similarity=0.040 Sum_probs=189.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++...+.+..|++.+.++|.+..++.. .....++.+++++++..+...+..++..++......++.+++++++++
T Consensus 106 ~~~t~~~l~~~~l~~~iid~l~~~~~~-----~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~ 180 (659)
T TIGR00954 106 VSRTYLSVYVATLDGQIESSIVRRSPR-----NFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLS 180 (659)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445667888999999999999865221 133335556666777777888888888888888888888888888888
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
+..+.++++||
T Consensus 181 ~~~~~~~~~~d--------------------------------------------------------------------- 191 (659)
T TIGR00954 181 GFTFYKVSNLD--------------------------------------------------------------------- 191 (659)
T ss_pred CCceEEeccCC---------------------------------------------------------------------
Confidence 75555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+ ++|++.+++++|++.+++.+...+
T Consensus 192 ------------------------------------------------------~-~~g~~~srlt~Dv~~i~~~~~~~~ 216 (659)
T TIGR00954 192 ------------------------------------------------------S-RIQNPDQLLTQDVEKFCDSVVELY 216 (659)
T ss_pred ------------------------------------------------------C-CCCCccccHHHHHHHHHHHHHHHH
Confidence 3 467777888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 243 SQGLRNGAQVIGAVSSLLI-ISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~-~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
..++..++.++++.+.++. .+|.+++++++..|+..++.+.+.++.++..++.++..++..+...|.++|+++||.|+.
T Consensus 217 ~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~ 296 (659)
T TIGR00954 217 SNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQG 296 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCC
Confidence 9999999999988888886 999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
|+.+.+++++..++..+...+..+......++..++.
T Consensus 297 e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 333 (659)
T TIGR00954 297 NKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVA 333 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999998887777666655543
No 24
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.81 E-value=2.7e-17 Score=158.70 Aligned_cols=149 Identities=11% Similarity=0.082 Sum_probs=124.5
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
+.+.|++++++.++|++++++++|++.+.+.+...+...+..++..++.++++++++|+++++++++.++..++...+.+
T Consensus 99 l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~ 178 (588)
T PRK13657 99 IIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMR 178 (588)
T ss_pred HHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666677777778887777777777788888888888899999999999999999999998999999
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHH
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTN 355 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (365)
+.++..++..+..++..+.+.|.++|++++|.++.++.+.+++++..++..+...+..........+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 179 KTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888877666555444444
No 25
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.80 E-value=3.8e-17 Score=156.19 Aligned_cols=141 Identities=10% Similarity=-0.009 Sum_probs=115.3
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
++++|+++|++.++|++++++++|++.+++.+.. +..++..++.++++++++++++|.+++++++..|+..++.....+
T Consensus 96 l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~ 174 (555)
T TIGR01194 96 ILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFM 174 (555)
T ss_pred HHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556667777777788888887754 677888888889999999999999999999888888888888888
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc--hHHHHHhhHHhHHHHHHHhHhhHHhH
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME--PYEVRLFTDQVSLSCTLQERLGVGVG 348 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (365)
+.++..++.++..++.++.+.|.++|++++|+++.+ ..+.+++++..++..+...+......
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 175 GGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999995 45678899888888887776554443
No 26
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.79 E-value=6.3e-17 Score=168.13 Aligned_cols=226 Identities=17% Similarity=0.188 Sum_probs=170.5
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++.+...+..|++++.++|.+..... ..+....+.+.++++.++..++.++..++..++++++..++|.++|
T Consensus 834 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf 906 (1466)
T PTZ00265 834 ILVAGGLYPVFALLYAKYVSTLFDFAN-------LEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLF 906 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999998764310 1122445566677777888889999999999999999999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhh
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGD 161 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (365)
++++++|++|||+.
T Consensus 907 ~~ll~~~~~~fd~~------------------------------------------------------------------ 920 (1466)
T PTZ00265 907 ENILYQEISFFDQD------------------------------------------------------------------ 920 (1466)
T ss_pred HHHHcCCHHHhCCC------------------------------------------------------------------
Confidence 99777777777641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHH
Q psy10468 162 LMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLV 241 (365)
Q Consensus 162 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~ 241 (365)
++++|++.+++++|++.++..+...
T Consensus 921 -------------------------------------------------------~~~~G~l~srl~~Dv~~l~~~~~~~ 945 (1466)
T PTZ00265 921 -------------------------------------------------------KHAPGLLSAHINRDVHLLKTGLVNN 945 (1466)
T ss_pred -------------------------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345666677777888899888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhH-HH-----------------HHHHHHHHH
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLS-RE-----------------AQNQAAKAV 303 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~ 303 (365)
+..++..++.++++++++++++|.++++++++.+ ++...+.++.+... ++ ..+..++.+
T Consensus 946 l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1466)
T PTZ00265 946 IVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPS 1022 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHH
Confidence 8888999999999999999999999887654333 33333333322211 01 223456778
Q ss_pred hHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 304 TIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 304 ~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
..+.|.++|+++||+|+.|+++.++|++..++..+...+.....+...++.+++.
T Consensus 1023 ~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1466)
T PTZ00265 1023 FLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQ 1077 (1466)
T ss_pred HHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888887777666666655443
No 27
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.79 E-value=9.2e-17 Score=153.52 Aligned_cols=217 Identities=12% Similarity=0.132 Sum_probs=170.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++..+..+..|++++.++|.+.... ..+.++.++..+++..++..++.++..++..+.+.++..++|.++++
T Consensus 16 ~~~~~~~l~~p~~~~~iid~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 87 (544)
T TIGR01842 16 FVINILMLAPPLYMLQVYDRVLTSG--------SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFA 87 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999886421 22345566667777778888999999999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
|++++|+..
T Consensus 88 ~ll~~~~~~----------------------------------------------------------------------- 96 (544)
T TIGR01842 88 ASFSATLRR----------------------------------------------------------------------- 96 (544)
T ss_pred HHhcCcccC-----------------------------------------------------------------------
Confidence 976666521
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHH-H
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKL-V 241 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~-~ 241 (365)
.++..+++++|++.+++.+.. .
T Consensus 97 ---------------------------------------------------------~~~~~~~~~~d~~~i~~~~~~~~ 119 (544)
T TIGR01842 97 ---------------------------------------------------------GKIDGLQALRDLDQLRQFLTGPG 119 (544)
T ss_pred ---------------------------------------------------------ccchHHHHHHHHHHHHHHHhhhH
Confidence 133456677888888887766 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 242 VSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 242 ~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
...++..++. ++.++++++++|++++++++..|+..++.....+..++..++.++..++..+.+.|.++|++++|+||.
T Consensus 120 ~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 198 (544)
T TIGR01842 120 LFAFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGM 198 (544)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCc
Confidence 3444444443 444567899999999999888888888777888888888889999999999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHH
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNL 356 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (365)
|+.+.++|++..++..+...+..........+..+
T Consensus 199 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 199 MGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888887766655555444433
No 28
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=2e-16 Score=152.02 Aligned_cols=223 Identities=28% Similarity=0.382 Sum_probs=181.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++...+.+..|.+++.++|.+.. ..+..+.+...+++..++..++.+...+...+.+.+...++|.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~ 93 (567)
T COG1132 24 LLSALLSLLLPLLIGRIIDALLA----------DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFE 93 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999881 34556666666666667788888888888888889999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
+++++|++||++++
T Consensus 94 ~l~~~~~~~~~~~~------------------------------------------------------------------ 107 (567)
T COG1132 94 KLLRLPLSFFDKAK------------------------------------------------------------------ 107 (567)
T ss_pred HHHhCCHHHhCcCC------------------------------------------------------------------
Confidence 96666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+|++.+++++|++.++..+.+..
T Consensus 108 ---------------------------------------------------------~g~l~~~~t~d~~~~~~~~~~~~ 130 (567)
T COG1132 108 ---------------------------------------------------------SGDLISRLTNDVEAVSNLVSTVL 130 (567)
T ss_pred ---------------------------------------------------------cchHHHHHHhhHHHHHHHHHHhH
Confidence 45555666666777777777664
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
..+...++.+++.+++++..+|.+++++++..|+..+....+.++.++..++.++..++.++.+.|.++|++++|+|+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~ 210 (567)
T COG1132 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAE 210 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhh
Confidence 55555788889999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+.+.+++++..++..+...+.........++...+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 211 DRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888776666666655544443
No 29
>KOG0055|consensus
Probab=99.75 E-value=3.4e-16 Score=153.69 Aligned_cols=195 Identities=26% Similarity=0.308 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHH
Q psy10468 166 LVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQG 245 (365)
Q Consensus 166 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~ 245 (365)
+++.+....+...+..+++..+....+.+...++|++.++.++++|.+|||.+.+|++.+++++|++.+++.+...+..+
T Consensus 73 ~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~ 152 (1228)
T KOG0055|consen 73 VALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNF 152 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHH
Confidence 44455555666677788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHH
Q psy10468 246 LRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYE 325 (365)
Q Consensus 246 ~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~ 325 (365)
++.+..+++.+++.|+..|+++++.+...|+..+....+.+.+.+...+++++.++..+...|.+.++|||.+|+.|+.+
T Consensus 153 i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e 232 (1228)
T KOG0055|consen 153 IQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKE 232 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcc
Q psy10468 326 VRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNG 360 (365)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (365)
.+||.+..+...+...+...+.+...++..++.+.
T Consensus 233 ~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~ 267 (1228)
T KOG0055|consen 233 IERYSKALENALKFGIKKGLFKGLGLGFTFFLLFA 267 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999988888877666554
No 30
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.74 E-value=1.8e-15 Score=144.74 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=113.3
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
+++.|+++|+++++|++++++++|++.+...+. .+..++.+++.++++++++++++|++++++++..|+..++.....+
T Consensus 91 ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~ 169 (547)
T PRK10522 91 ILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVA 169 (547)
T ss_pred HHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666677777777778888887655 4677888889999999999999999999999999998888888999
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc---hHHHHHhhHHhHHHHHHHhHhhHHhHH
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME---PYEVRLFTDQVSLSCTLQERLGVGVGM 349 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (365)
+.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.+++++..++..+...+.......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 170 RVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999996 4443 456788888888877766665544433
No 31
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.73 E-value=1e-15 Score=160.69 Aligned_cols=138 Identities=18% Similarity=0.208 Sum_probs=113.8
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
+++.|++||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+++++++.+.++++++...+.+
T Consensus 1048 ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1522)
T TIGR00957 1048 KLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVA 1127 (1522)
T ss_pred HHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445556666677777888999988888899999999999999999999998888877777777777777778
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhh
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLG 344 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (365)
..+...+...+..++..+.+.|+++|+++||+|+.++.+.+++.+..+...+......
T Consensus 1128 ~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~ 1185 (1522)
T TIGR00957 1128 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSI 1185 (1522)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888889999999999999999999999999999999999888887765543
No 32
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-14 Score=128.22 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhhcccccccccchh-hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcch
Q psy10468 136 HAESMVLGTLYFGGHLMASNTLTAG-DLMSFLV--STQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDI 212 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~ 212 (365)
+......+.+.+.||++....+... ..+.++. ...-.+...+.+..|++.+.++....+...++|.++|+|+...++
T Consensus 27 ~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp 106 (573)
T COG4987 27 LTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSP 106 (573)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCh
Confidence 3344556667777777766555433 2322222 233477888999999999999999999999999999999999999
Q ss_pred hcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHHHHHHHhhHh
Q psy10468 213 AFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGML-GIVPIVIISGTFIGSLLRSL 291 (365)
Q Consensus 213 ~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l-~~~~~~~~~~~~~~~~~~~~ 291 (365)
.-..+.++||+++|+..|++.+++.+...+.+.+..++...+..+.+.+++|++++.+. .+....++++..+.+..++.
T Consensus 107 ~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~ 186 (573)
T COG4987 107 ALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKF 186 (573)
T ss_pred HHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999988776 44455566667888888899
Q ss_pred HHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhccc
Q psy10468 292 SREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGK 361 (365)
Q Consensus 292 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (365)
.++....++.+.+.+.|.+.|..+.+.||+++.+.+.+.+..+.+.+.+.|.............++..+.
T Consensus 187 ~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~ 256 (573)
T COG4987 187 GAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLL 256 (573)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888877777777665543
No 33
>PLN03130 ABC transporter C family member; Provisional
Probab=99.66 E-value=3.3e-14 Score=149.53 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHH
Q psy10468 197 FQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPI 276 (365)
Q Consensus 197 ~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~ 276 (365)
.++|.++++++++.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++++++|...++++.+..+
T Consensus 986 ~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~ 1065 (1622)
T PLN03130 986 KRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVL 1065 (1622)
T ss_pred HHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333335555555555666677777777888899988888888888888888888888888888554444443333
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHH
Q psy10468 277 VIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQ 340 (365)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~ 340 (365)
++.....+.+..++..+...+..++..+.+.|+++|+++||+|+.++.+.+++++..+...+..
T Consensus 1066 ~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1066 FYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666777888999999999999999999999887777776666655443
No 34
>KOG0054|consensus
Probab=99.66 E-value=6.8e-15 Score=147.80 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHH
Q psy10468 164 SFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVS 243 (365)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~ 243 (365)
.++.+++.+......+....+.+.....+.+....+.+++++++++.|++|||..++|+++||+..|++.+++.++..+.
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHH
Confidence 34555666677777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCch
Q psy10468 244 QGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEP 323 (365)
Q Consensus 244 ~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~ 323 (365)
.++...+.+++.++++.+..|+..++++.+.++++.+..++.+..+...+-....+....+++.|+++|..+||+|+.++
T Consensus 938 ~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 938 FFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhHHHHHHHhHhhHHhHHH
Q psy10468 324 YEVRLFTDQVSLSCTLQERLGVGVGMF 350 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (365)
++.+++++..|...++.......+...
T Consensus 1018 rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 1018 RFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999888877644433333
No 35
>PTZ00243 ABC transporter; Provisional
Probab=99.65 E-value=3.3e-14 Score=149.25 Aligned_cols=167 Identities=13% Similarity=0.154 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 178 QMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVS 257 (365)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 257 (365)
.+...+..+...........++|+++++++++.|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555556667999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHH
Q psy10468 258 SLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSC 337 (365)
Q Consensus 258 ~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~ 337 (365)
++++.+|.+.++++.+..++..+...+.+..++..+...+..++..+.+.|+++|+++||+|+.++.+.+++.+..++..
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999997665555555555555666777777777778888999999999999999999999999999999999998888
Q ss_pred HHHhHhh
Q psy10468 338 TLQERLG 344 (365)
Q Consensus 338 ~~~~~~~ 344 (365)
+...+..
T Consensus 1172 ~~~~~~~ 1178 (1560)
T PTZ00243 1172 SCSYLEN 1178 (1560)
T ss_pred HHHHHHH
Confidence 7766543
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.62 E-value=1e-13 Score=145.47 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 175 SMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIG 254 (365)
Q Consensus 175 ~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~ 254 (365)
....+..++..+.....+.+...++|.++++++++.|++||++.++|++++|+++|++.+++.+...+..++..++.+++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhH
Q psy10468 255 AVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVS 334 (365)
Q Consensus 255 ~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~ 334 (365)
.++++++++|+++++++.++++++++...+.+..++..+...+..+...+.+.|+++|+.+||+|+.++.+.+++++..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999877666666666666667777777777778888899999999999999999999999999999999988
Q ss_pred HHHHHHh
Q psy10468 335 LSCTLQE 341 (365)
Q Consensus 335 ~~~~~~~ 341 (365)
...+...
T Consensus 1096 ~~~~~~~ 1102 (1490)
T TIGR01271 1096 LHTANWF 1102 (1490)
T ss_pred HHHHHHH
Confidence 7655443
No 37
>KOG0057|consensus
Probab=99.59 E-value=4.6e-13 Score=120.68 Aligned_cols=224 Identities=15% Similarity=0.193 Sum_probs=182.4
Q ss_pred HHHHhHHHHHHHHHHHHhh--hcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 6 AFINIQLPLYLGNIINILA--KFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFES 83 (365)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 83 (365)
.++++..|.+++.++|.+. ++.++ .++.....+..+++.-+..++++.++......+.++.-++.-.+.|++
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a------~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~ 116 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPA------VLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRH 116 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999995 33221 344455567777778888888888899888888888888888888887
Q ss_pred HhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhHH
Q psy10468 84 ILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLM 163 (365)
Q Consensus 84 i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 163 (365)
T Consensus 117 -------------------------------------------------------------------------------- 116 (591)
T KOG0057|consen 117 -------------------------------------------------------------------------------- 116 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHH
Q psy10468 164 SFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVS 243 (365)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~ 243 (365)
+++++.++|.+.++|++.+.+.+....+...+.....
T Consensus 117 -------------------------------------------~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 117 -------------------------------------------LMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred -------------------------------------------HHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 6677777777777888888888888888888887777
Q ss_pred HHHHHHHHHHHHHHHH-HhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 244 QGLRNGAQVIGAVSSL-LIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 244 ~~~~~~~~~i~~~~~l-~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
.++..++-+......+ .-..+..++++++....+..+......+-.+.+++.+++.++..+.+.|++.|..+||+||.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 7887777766555444 446788888888888888888888888888888899999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHh
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFL 358 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (365)
+++.++|+...+++.++..+...+.++.......+.
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iF 269 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIF 269 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Confidence 999999999999999999998877777776666554
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=99.59 E-value=2.3e-13 Score=143.04 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10468 169 TQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRN 248 (365)
Q Consensus 169 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~ 248 (365)
++.++.....+..++..+.....+.+...++|+++++++++.|++||+++++|++++|+++|++.+++.+...+..++..
T Consensus 955 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~ 1034 (1495)
T PLN03232 955 VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQ 1034 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 34444555666777778888888999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHH
Q psy10468 249 GAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRL 328 (365)
Q Consensus 249 ~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~ 328 (365)
++.+++.++++++++|...++++.+..++......+.+..++..+...+..++..+.+.|+++|+++||+|+.++.+.++
T Consensus 1035 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1035 LWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 88888888888888765444333332333333334444555566677788889999999999999999999999988887
Q ss_pred hhHHhHHHHHHHh
Q psy10468 329 FTDQVSLSCTLQE 341 (365)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (365)
+++..+...+...
T Consensus 1115 ~~~~~~~~~~~~~ 1127 (1495)
T PLN03232 1115 NGKSMDNNIRFTL 1127 (1495)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666555544
No 39
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.59 E-value=8e-13 Score=138.78 Aligned_cols=213 Identities=19% Similarity=0.228 Sum_probs=162.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 4 LVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFES 83 (365)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 83 (365)
+..++....|++++.+++.+...... .....+.+++.+++..+++.++.....+...+.+.+++..+...+|+|
T Consensus 91 ~~~~~~~~~P~ll~~li~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K 164 (1490)
T TIGR01271 91 FGEATKAVQPLLLGRIIASYDPFNAP------EREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKK 164 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999987322111 112234455566666667777777777777788888888888888888
Q ss_pred HhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhHH
Q psy10468 84 ILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLM 163 (365)
Q Consensus 84 i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 163 (365)
+++++...+
T Consensus 165 ~L~l~~~~~----------------------------------------------------------------------- 173 (1490)
T TIGR01271 165 TLKLSSRVL----------------------------------------------------------------------- 173 (1490)
T ss_pred HHhCCHHHh-----------------------------------------------------------------------
Confidence 555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHH
Q psy10468 164 SFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVS 243 (365)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~ 243 (365)
++.++|++++++++|++.+...... +.
T Consensus 174 ----------------------------------------------------~~~~~g~i~nl~s~Dv~~i~~~~~~-~~ 200 (1490)
T TIGR01271 174 ----------------------------------------------------DKISTGQLVSLLSNNLNKFDEGLAL-AH 200 (1490)
T ss_pred ----------------------------------------------------cCCCHHHHHHHHHHhHHHHHHHHHH-HH
Confidence 4555666667777778888876554 34
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCch
Q psy10468 244 QGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEP 323 (365)
Q Consensus 244 ~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~ 323 (365)
.++...+.+++++++++....+.+++.++++++++++...+.++..+..++..+..++..+.+.|.++|+|+||.++.|+
T Consensus 201 ~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~ 280 (1490)
T TIGR01271 201 FVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEE 280 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence 45566677777777777777788888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhHHHHHHHhHhhHH
Q psy10468 324 YEVRLFTDQVSLSCTLQERLGVG 346 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ 346 (365)
.+.+++++..++..+...+....
T Consensus 281 ~~~~~i~~~R~~El~~~~~~~~~ 303 (1490)
T TIGR01271 281 AMEKIIKNIRQDELKLTRKIAYL 303 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777776665543
No 40
>PLN03232 ABC transporter C family member; Provisional
Probab=99.58 E-value=7.9e-13 Score=139.04 Aligned_cols=140 Identities=17% Similarity=0.129 Sum_probs=95.4
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---HHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLG---IVPIVIISGTF 283 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~---~~~~~~~~~~~ 283 (365)
.+++|.+++++.++|++++++++|++.+++.. ..+..++...+.++++++++. +.+++..++ +.++..++...
T Consensus 384 ~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l~~pl~~~ 459 (1495)
T PLN03232 384 SLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFLLIPLQTL 459 (1495)
T ss_pred HhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555666666777777887764 344555555555554444332 223333322 22333334566
Q ss_pred HHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHH
Q psy10468 284 IGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMF 350 (365)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (365)
+.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+........
T Consensus 460 ~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~ 526 (1495)
T PLN03232 460 IVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFN 526 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999999999999999999998888877777766554443
No 41
>PLN03130 ABC transporter C family member; Provisional
Probab=99.57 E-value=1.2e-12 Score=137.97 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=100.2
Q ss_pred HHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 207 ILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 207 ll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
.++++.+++++.++|++++++++|++.+++... .+..++...+.+++++++++..-...+++.++++++.+++...+.+
T Consensus 384 ~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~ 462 (1622)
T PLN03130 384 SLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIIS 462 (1622)
T ss_pred HhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555566666777777888887763 3566666666666555554443222233333344455556667778
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHH
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQ 351 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (365)
+.++..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+.........
T Consensus 463 ~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 527 (1622)
T PLN03130 463 KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNS 527 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999888877766666554444333
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.56 E-value=1.5e-12 Score=137.20 Aligned_cols=213 Identities=13% Similarity=0.073 Sum_probs=149.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 4 LVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFES 83 (365)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 83 (365)
+..+++...|++++.++|.+..+... ....+.+++.+++..++..++.....+...+.+.+++..++..+|+|
T Consensus 328 ~~~~~~~~~P~ll~~li~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K 400 (1522)
T TIGR00957 328 IHDLMMFIGPQILSLLIRFVNDPMAP-------DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRK 400 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999987653211 11123344455555556666655555667788889999999999999
Q ss_pred HhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhHH
Q psy10468 84 ILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLM 163 (365)
Q Consensus 84 i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 163 (365)
+++++.+++++.
T Consensus 401 ~L~l~~~~~~~~-------------------------------------------------------------------- 412 (1522)
T TIGR00957 401 ALVITNSARKSS-------------------------------------------------------------------- 412 (1522)
T ss_pred HHhCChhhcCCC--------------------------------------------------------------------
Confidence 666666555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHH
Q psy10468 164 SFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVS 243 (365)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~ 243 (365)
++|+++++++.|++.+.... ..+.
T Consensus 413 -------------------------------------------------------~~G~i~nl~s~D~~~i~~~~-~~~~ 436 (1522)
T TIGR00957 413 -------------------------------------------------------TVGEIVNLMSVDAQRFMDLA-TYIN 436 (1522)
T ss_pred -------------------------------------------------------CHHHHHHHHHHhHHHHHHHH-HHHH
Confidence 45555566666677776643 3355
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCch
Q psy10468 244 QGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEP 323 (365)
Q Consensus 244 ~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~ 323 (365)
.++...+.+++++++++..-.+.+++.++++++++++.....++.++..++..+..++..+.+.|.++|+++||.++.|+
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~ 516 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWEL 516 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55555555555555443333334455556667777778888899999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhHHHHHHHhHhhHHh
Q psy10468 324 YEVRLFTDQVSLSCTLQERLGVGV 347 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~ 347 (365)
.+.+++++..++..+...+.....
T Consensus 517 ~~~~~i~~~r~~e~~~~~~~~~~~ 540 (1522)
T TIGR00957 517 AFLDKVEGIRQEELKVLKKSAYLH 540 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887776665544443
No 43
>PTZ00243 ABC transporter; Provisional
Probab=99.55 E-value=2.4e-12 Score=135.49 Aligned_cols=223 Identities=16% Similarity=0.124 Sum_probs=173.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++..++....|++++.+++.+-.+.. .+...+.+++.+++..+++.++.....+...+.+.+++..+...+|+
T Consensus 254 l~~~~~~l~~P~ll~~~v~~l~~~~~-------~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~ 326 (1560)
T PTZ00243 254 LLSDVCTLTLPVLLKYFVKFLDADNA-------TWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFE 326 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999998743211 22223445555666667777777777788888888999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
|+++++.+....
T Consensus 327 K~l~ls~~~~~~-------------------------------------------------------------------- 338 (1560)
T PTZ00243 327 KCFTISSKSLAQ-------------------------------------------------------------------- 338 (1560)
T ss_pred HHHhCChhhhCC--------------------------------------------------------------------
Confidence 965554443320
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
.+.++|++++.++.|++.+.+++.. +
T Consensus 339 -----------------------------------------------------~~~~~G~i~nl~s~Dv~~i~~~~~~-~ 364 (1560)
T PTZ00243 339 -----------------------------------------------------PDMNTGRIINMMSTDVERINSFMQY-C 364 (1560)
T ss_pred -----------------------------------------------------CCCCHHHHHHHHHHhHHHHHHHHHH-H
Confidence 1346788888888999999988744 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
..++...+.++++++++.....+.+++.++++++..++...+.++..+..++..+..++..+...|.++|+|+||.++.|
T Consensus 365 ~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE 444 (1560)
T PTZ00243 365 MYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWE 444 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888788888888888888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHH
Q psy10468 323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354 (365)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
+.+.+++++..++..+...+..........+.
T Consensus 445 ~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~ 476 (1560)
T PTZ00243 445 PCFVANIEDKRARELRYLRDVQLARVATSFVN 476 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877777666655555444333
No 44
>KOG0056|consensus
Probab=99.52 E-value=9.1e-14 Score=123.23 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=166.7
Q ss_pred HHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 5 VAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVA--QSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
.-+++...|.+.++++|.+..+++- .+...+.++.+..+.... +.++.-++.++|.++++...+++-.++|+
T Consensus 227 ~rli~~~~pi~~k~iv~~ltap~~~------~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfr 300 (790)
T KOG0056|consen 227 GRLINVSLPILSKWIVDELTAPDTF------QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFR 300 (790)
T ss_pred HHHHhhhhHHhHHHHHHhhcCcchh------hHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHH
Confidence 3456778899999999999854221 233344444444443332 35777889999999999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL 162 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 162 (365)
|+.++++.|+-.+++||+...+.
T Consensus 301 Hlh~LSlrwHL~rrtGeVLrvmd--------------------------------------------------------- 323 (790)
T KOG0056|consen 301 HLHNLSLRWHLNRRTGEVLRVMD--------------------------------------------------------- 323 (790)
T ss_pred HHHhhceeeeecccccceeehhc---------------------------------------------------------
Confidence 96666666666666666654443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468 163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV 242 (365)
Q Consensus 163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~ 242 (365)
+..+.+. +.....
T Consensus 324 ------------------------------------------------------------------rGtssvt-ll~yvV 336 (790)
T KOG0056|consen 324 ------------------------------------------------------------------RGTSSVT-LLEYVV 336 (790)
T ss_pred ------------------------------------------------------------------cCcchhh-HHHHHH
Confidence 3333332 223333
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcC
Q psy10468 243 SQGLRNGAQVIGA-VSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAM 321 (365)
Q Consensus 243 ~~~~~~~~~~i~~-~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 321 (365)
.++...++-+.+. ..+...+||+.+++++++..++......+...-.+.+++...+..+....-.|++-|.++||.||+
T Consensus 337 F~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~A 416 (790)
T KOG0056|consen 337 FQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNA 416 (790)
T ss_pred hhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCc
Confidence 4444444444333 334456899999999999999999988888888888888888889999999999999999999999
Q ss_pred chHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhccc
Q psy10468 322 EPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGK 361 (365)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (365)
|+++.+||.++..++.+...|..........+.+.+..++
T Consensus 417 e~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 417 EDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999887777666666666554443
No 45
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.46 E-value=6.6e-12 Score=108.88 Aligned_cols=167 Identities=13% Similarity=0.099 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 173 QRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQV 252 (365)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
...+-.+.+...+.....++++.+.++|.++.+|+++.|.+.+++.+++.++..+++|++++.-. ...+..+.+.....
T Consensus 57 llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~il~ 135 (546)
T COG4615 57 LLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQAIILT 135 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHHHHHH
Confidence 33444566677777888899999999999999999999999999999999999999999999944 44578899999999
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc--hHHHHHhh
Q psy10468 253 IGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME--PYEVRLFT 330 (365)
Q Consensus 253 i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~--~~~~~~~~ 330 (365)
+++.+++++.+|++.+++++.+.+..+...+...+..+..++.++..+++.+..+..++|.|+++..+.. ..+.+++.
T Consensus 136 l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~ 215 (546)
T COG4615 136 LGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYI 215 (546)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997643 33445565
Q ss_pred HHhHHHHHHH
Q psy10468 331 DQVSLSCTLQ 340 (365)
Q Consensus 331 ~~~~~~~~~~ 340 (365)
+.-.+.++..
T Consensus 216 ~~a~~~r~~~ 225 (546)
T COG4615 216 PDAQEYRHHI 225 (546)
T ss_pred cchHHHHhhh
Confidence 5555555533
No 46
>KOG0054|consensus
Probab=99.41 E-value=7.5e-11 Score=119.27 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=178.3
Q ss_pred HhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy10468 9 NIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQD 88 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~ 88 (365)
....|.+++.+++.+.++.. .....+.+++.+++..+.+.++.--..+...+.+.+++..+-..+|+|.++++
T Consensus 217 ~~~~P~lL~~li~~~~~~~~-------~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls 289 (1381)
T KOG0054|consen 217 GFVGPLLLKKLILFFSEKRL-------PLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLS 289 (1381)
T ss_pred ccccHHHHHHHHHHhcCCCc-------ccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCc
Confidence 55679999999998877511 34456667777777888888887777778888888888888888888855444
Q ss_pred cccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHH
Q psy10468 89 IAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVS 168 (365)
Q Consensus 89 ~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 168 (365)
T Consensus 290 -------------------------------------------------------------------------------- 289 (1381)
T KOG0054|consen 290 -------------------------------------------------------------------------------- 289 (1381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy10468 169 TQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRN 248 (365)
Q Consensus 169 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~ 248 (365)
...-.+.+.|+++|.++.|++++.+.... +..+...
T Consensus 290 -------------------------------------------~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~ 325 (1381)
T KOG0054|consen 290 -------------------------------------------NSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSA 325 (1381)
T ss_pred -------------------------------------------hhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHH
Confidence 44445567788888888999999887554 6777888
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHH
Q psy10468 249 GAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRL 328 (365)
Q Consensus 249 ~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~ 328 (365)
.+.++.++..++..-.+-+++.++...++.++.....++.++.+.+..+..++..+..+|.++|||+||.|+.|+.+.++
T Consensus 326 Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~ 405 (1381)
T KOG0054|consen 326 PLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKK 405 (1381)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHH
Confidence 88888888887777677777778888888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcc
Q psy10468 329 FTDQVSLSCTLQERLGVGVGMFQAGTNLFLNG 360 (365)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (365)
.++..++..+...|.....+.......+...+
T Consensus 406 I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~l 437 (1381)
T KOG0054|consen 406 IEDLRQKELKLLRKSAYLSALNSFLNFFSPVL 437 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888777776666665544443
No 47
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.31 E-value=5.2e-10 Score=100.40 Aligned_cols=218 Identities=15% Similarity=0.215 Sum_probs=180.0
Q ss_pred HHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 5 VAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESI 84 (365)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i 84 (365)
..++.+..|+++-++.|.+... .+.+++..+..+.++.++++.++.+++.....+++.++..++...+|...
T Consensus 35 INiL~L~~~lyMLQVyDRVL~S--------~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~ 106 (580)
T COG4618 35 INLLALTGPLYMLQVYDRVLPS--------RSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAAS 106 (580)
T ss_pred HHHHHHhhhHHHHHHHhhhccC--------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444566799999999999875 35677888888889999999999999999999999999999999999973
Q ss_pred hcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhHHH
Q psy10468 85 LKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMS 164 (365)
Q Consensus 85 ~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 164 (365)
.+.+..
T Consensus 107 ~~~~l~-------------------------------------------------------------------------- 112 (580)
T COG4618 107 FSAPLL-------------------------------------------------------------------------- 112 (580)
T ss_pred HhhHHh--------------------------------------------------------------------------
Confidence 222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHH
Q psy10468 165 FLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQ 244 (365)
Q Consensus 165 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~ 244 (365)
.+.+|+=.+. -+|.+++++++...-..
T Consensus 113 ----------------------------------------------------~~~~g~~~Q~-LrDL~qvR~Fltg~g~~ 139 (580)
T COG4618 113 ----------------------------------------------------RRGSGDGLQP-LRDLDQVRQFLTGTGLT 139 (580)
T ss_pred ----------------------------------------------------hcCCCccccc-hhhHHHHHHHHcCCCcc
Confidence 2333433333 37899999998876677
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchH
Q psy10468 245 GLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPY 324 (365)
Q Consensus 245 ~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~ 324 (365)
.+-+.-..-.++.++|.++|+++++.++...+.+.+.+...+..++..++..+...+.+.....+..|.++|+++|+.+.
T Consensus 140 A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~ 219 (580)
T COG4618 140 AFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGN 219 (580)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHH
Confidence 77777778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHH
Q psy10468 325 EVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLF 357 (365)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (365)
..++|.+...++.+.+.+..-.+.....++..+
T Consensus 220 l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~ 252 (580)
T COG4618 220 LAKRWGRFNAAYLSAQERASDRNGAFGALSRAL 252 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999998888877666555555555443
No 48
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.23 E-value=1.7e-08 Score=88.12 Aligned_cols=224 Identities=18% Similarity=0.148 Sum_probs=179.0
Q ss_pred HHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 5 VAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESI 84 (365)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i 84 (365)
...+++.....-+.+.|.+.++ +.+..+..++.+++..+...++.....++...++.+-++.+.+.+.++.
T Consensus 39 ~~~lsv~~~~~~g~~~~aL~~~---------d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~y 109 (281)
T PF06472_consen 39 RVYLSVRINFWNGDFYNALQQK---------DLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRY 109 (281)
T ss_pred HHHHHHHHHHHhhHHHHHHHhc---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677778888888886 5566777777788888888888888888888888888888888888875
Q ss_pred hcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhHHH
Q psy10468 85 LKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMS 164 (365)
Q Consensus 85 ~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 164 (365)
++-. .||+-+
T Consensus 110 l~~~-~yY~l~--------------------------------------------------------------------- 119 (281)
T PF06472_consen 110 LSNR-TYYRLN--------------------------------------------------------------------- 119 (281)
T ss_pred cCCc-hhHhhh---------------------------------------------------------------------
Confidence 5444 444411
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHH
Q psy10468 165 FLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQ 244 (365)
Q Consensus 165 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~ 244 (365)
..+ ....+-=+|+++|++...+.......+
T Consensus 120 --------------------------------------------~~~------~~idNpDQRIteDi~~f~~~~~~l~~~ 149 (281)
T PF06472_consen 120 --------------------------------------------NLD------GRIDNPDQRITEDIRKFTESSLSLFLG 149 (281)
T ss_pred --------------------------------------------ccc------cccccHhhHHHHHHHHHHHHHHHHHHH
Confidence 111 112334479999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH-HHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCch
Q psy10468 245 GLRNGAQVIGAVSSLLIISPSLTL-GMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEP 323 (365)
Q Consensus 245 ~~~~~~~~i~~~~~l~~~~~~l~l-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~ 323 (365)
++..++.++.....+...+..+++ ++++..++...+...++|...+...+.++.+++.-.......++.++|-.++.|+
T Consensus 150 ~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~ 229 (281)
T PF06472_consen 150 LLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGES 229 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcH
Confidence 999999999999999888888877 7778888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHH
Q psy10468 324 YEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLF 357 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (365)
.|.++.++..++..+...+....+..........
T Consensus 230 ~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 263 (281)
T PF06472_consen 230 RERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFY 263 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777666666665555554
No 49
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.2e-09 Score=94.31 Aligned_cols=172 Identities=14% Similarity=0.149 Sum_probs=146.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q psy10468 187 IKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSL-LIISPS 265 (365)
Q Consensus 187 ~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~ 265 (365)
.....++.....+--+.|.|+.++++.|+.++.+|.+...+.+..+.++......+.+.+...+-+....+++ ...+|+
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 3445666777788888999999999999999999999999999999999888888888888888776555555 457999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhH
Q psy10468 266 LTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGV 345 (365)
Q Consensus 266 l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (365)
.+++++++..++.++.......-....++..++.++.+..-.|.+-|..++|.||.|+++..+|++..+.+.++..|...
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 99999999999999888888877788888999999999999999999999999999999999999999999999988766
Q ss_pred HhHHHHHHHHHHh
Q psy10468 346 GVGMFQAGTNLFL 358 (365)
Q Consensus 346 ~~~~~~~~~~~~~ 358 (365)
...........+.
T Consensus 165 Sl~~Ln~gQ~~I~ 177 (497)
T COG5265 165 SLLVLNFGQTAIF 177 (497)
T ss_pred HHHHHHHhhHHHH
Confidence 6555555544443
No 50
>KOG0058|consensus
Probab=99.11 E-value=9.5e-09 Score=96.52 Aligned_cols=67 Identities=30% Similarity=0.618 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10468 132 LNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 198 (365)
..+.........++++|++++..|.++.|++..|..+...+...+..+...+....+...+.++..+
T Consensus 377 ~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFe 443 (716)
T KOG0058|consen 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFE 443 (716)
T ss_pred HHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4445566788899999999999999999999999999999999999999999999999999988888
No 51
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.76 E-value=1e-05 Score=66.50 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=68.5
Q ss_pred ccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHH
Q psy10468 217 STRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQ 296 (365)
Q Consensus 217 ~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (365)
+.+.+.+..|+ .-..++.+++...++.++.++++++++.++++.+++++++.+++...++..+...+.++..+...+.+
T Consensus 92 ~~~~S~i~ARv-~lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i~~~f~~~~~~L~~~LN 170 (237)
T PF13748_consen 92 GLSVSTIAARV-ALSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLILPRFARRNYRLYRRLN 170 (237)
T ss_pred CCChhHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666 44567778888889999999999999999999999999999999999888888888887777666665
Q ss_pred HHHHHHH
Q psy10468 297 NQAAKAV 303 (365)
Q Consensus 297 ~~~~~~~ 303 (365)
+..++-.
T Consensus 171 nrlE~eV 177 (237)
T PF13748_consen 171 NRLEKEV 177 (237)
T ss_pred HHHHHHc
Confidence 5554433
No 52
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.62 E-value=6e-06 Score=81.88 Aligned_cols=158 Identities=17% Similarity=0.281 Sum_probs=109.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHH
Q psy10468 38 SEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHN 117 (365)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~ 117 (365)
..++.++++.++..+..++..+...+...+...+++.++-.++.+.=.. -..... +|++++|+++|++...+.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~-~f~~~~---~G~i~srl~~Di~~i~~~~~~ 277 (711)
T TIGR00958 202 SAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLG-FFDENK---TGELTSRLSSDTQTMSRSLSL 277 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHcCCC---chHHHHHHHHHHHHHHHHHHH
Confidence 3355566666667777777777778888888888888888887764111 011112 489999999999844443333
Q ss_pred H----------------------------------------------------------------HHHHHHh-----hcc
Q psy10468 118 H----------------------------------------------------------------VIRMITG-----AFR 128 (365)
Q Consensus 118 ~----------------------------------------------------------------~~~~~~~-----~~~ 128 (365)
. +.|.+.| .+.
T Consensus 278 ~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~ 357 (711)
T TIGR00958 278 NVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFA 357 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhc
Confidence 3 3333322 000
Q ss_pred c-----------------------------ccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q psy10468 129 S-----------------------------SPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQM 179 (365)
Q Consensus 129 ~-----------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l 179 (365)
. ......+......+++++|++++..|.++.|.++.+..+...+..++..+
T Consensus 358 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l 437 (711)
T TIGR00958 358 AEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVL 437 (711)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01222333445667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy10468 180 SLLFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l 199 (365)
......+.....+.+...++
T Consensus 438 ~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 438 SYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887763
No 53
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.59 E-value=2.3e-05 Score=73.83 Aligned_cols=131 Identities=16% Similarity=0.047 Sum_probs=103.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 222 ELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLL---------------IISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 222 ~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~---------------~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
+.=+|+.+|+....+.-......++.++++.+...+++. .+...+..++++.++...++..+++|
T Consensus 149 NpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr 228 (604)
T COG4178 149 NPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGR 228 (604)
T ss_pred ChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHcc
Confidence 334788899998888777777888888888777777776 34455666666777777778888999
Q ss_pred HhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHH
Q psy10468 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQA 352 (365)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (365)
...+...+..+..+..-..+....++...|-.++.|+.+.++.++..+...+...+...+......
T Consensus 229 ~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~ 294 (604)
T COG4178 229 PLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTW 294 (604)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999998888887777665554444443333
No 54
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.57 E-value=6.2e-05 Score=73.46 Aligned_cols=191 Identities=10% Similarity=0.074 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHH
Q psy10468 160 GDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFK 239 (365)
Q Consensus 160 ~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~ 239 (365)
.+.+..+...+.+...++.+....+.+.....+.+...++..++++|++++|..||+++++|++. +-+..+++.-.
T Consensus 190 ~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~----sR~~el~~Ir~ 265 (709)
T COG2274 190 RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEII----SRVRELEQIRE 265 (709)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHH----HHHHHHHHHHH
Confidence 34455666677778888999999999999999999999999999999999999999999999983 66666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhh
Q psy10468 240 LVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAF 319 (365)
Q Consensus 240 ~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~ 319 (365)
......+..++.++..++++..+-+.-..++++.+....+......-......++.++...+....-.-.++.++-++.-
T Consensus 266 flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tv 345 (709)
T COG2274 266 FLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETV 345 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHH
Confidence 66666777788888888898888888888888887777777777777778888888888888888999999999999999
Q ss_pred cCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHH
Q psy10468 320 AMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354 (365)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
...+.+...+++..+.+.+......+.........
T Consensus 346 K~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 380 (709)
T COG2274 346 KALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILN 380 (709)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99988888777777776666555555444444333
No 55
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.56 E-value=5.8e-06 Score=79.35 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhh---------
Q psy10468 43 PALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLN--------- 113 (365)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~--------- 113 (365)
.+++.++..++.++..+..+....+...+++.++-+++.+. ..-...... +|++++++++|++...+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~-~~~~~~~~~---~g~~~~~l~~d~~~i~~~~~~~~~~~ 134 (529)
T TIGR02868 59 VRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARL-ALAGRRRFQ---TGDLLGRLGADVDALQDLYVRVIVPL 134 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CccccccCC---hhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33455666777888888888888888888999998888753 222333334 48999999999983333
Q ss_pred --------------------------------------------------------hhHHHHHHHHHh-----hcc----
Q psy10468 114 --------------------------------------------------------PIHNHVIRMITG-----AFR---- 128 (365)
Q Consensus 114 --------------------------------------------------------~~~~~~~~~~~~-----~~~---- 128 (365)
++.+.+.|.++| .+.
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~ 214 (529)
T TIGR02868 135 VVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDP 214 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHH
Confidence 333333333333 110
Q ss_pred -------------------------cccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 129 -------------------------SSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLF 183 (365)
Q Consensus 129 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~ 183 (365)
..+....+......+++++|++.+..|.++.|.+..+..+...+..++..+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~ 294 (529)
T TIGR02868 215 ALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123444455566777888999999999999999999999999999999999998
Q ss_pred HHHHHHHhHHHHHHH
Q psy10468 184 GSYIKGLSSGARIFQ 198 (365)
Q Consensus 184 ~~~~~~~~~~~~~~~ 198 (365)
..+.....+.++..+
T Consensus 295 ~~~~~~~~~~~ri~~ 309 (529)
T TIGR02868 295 QALTRVRAAAERIEE 309 (529)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877777666
No 56
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.49 E-value=2.2e-05 Score=77.90 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10468 132 LNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 199 (365)
+...+..+...+++++|++++..|.++.|.++++..+...+..++..+......+.....+.++..++
T Consensus 367 ~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 434 (694)
T TIGR01846 367 AIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDI 434 (694)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566778889999999999999999999999999999999999999999999999888888773
No 57
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.00034 Score=64.30 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy10468 9 NIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQD 88 (365)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~ 88 (365)
.+..-.+-|+++..-...+++ ..-+++.+....=+..+.+.+..|......|....++-.++|.++|+|+...+
T Consensus 32 sigLl~lSGwfisasAiag~~------~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~s 105 (573)
T COG4987 32 SIGLLTLSGWFISASAIAGLA------YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLS 105 (573)
T ss_pred HHHHHHHhHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCC
Confidence 334444456665544433221 23334555556667788899999999999999999999999999999999999
Q ss_pred cccccccccchhhhhhhhhHHhhhhhhHH
Q psy10468 89 IAFFDSTRTGELVDSAKPNIKNKLNPIHN 117 (365)
Q Consensus 89 ~~~f~~~~~g~l~~~~~~~~~~~~~~~~~ 117 (365)
+.-....++||+.+|+..||+..++-...
T Consensus 106 p~~~~r~r~gdLL~RLvaDVd~Ld~lyLR 134 (573)
T COG4987 106 PALLLRYRSGDLLNRLVADVDALDNLYLR 134 (573)
T ss_pred hHHHHhcChHhHHHHHHhhHHHHhhHHHH
Confidence 99999999999999999999876554433
No 58
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.45 E-value=3.3e-05 Score=76.79 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10468 132 LNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 199 (365)
+...+..+...+++++|++++..|.++.|.++++..+...+..|+..+......+.....+.++..++
T Consensus 384 ~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 451 (708)
T TIGR01193 384 IKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEV 451 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677888999999999999999999999999999999999999999999998888888773
No 59
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.45 E-value=1.7e-05 Score=76.80 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10468 136 HAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 199 (365)
.......+++++|++++..|.++.|.++.+..+...+..++..+......+.....+.++..++
T Consensus 230 ~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l 293 (569)
T PRK10789 230 AIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAM 293 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677889999999999999999999999999999999999999888888887777663
No 60
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.42 E-value=4.2e-05 Score=75.80 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy10468 132 LNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 199 (365)
+...+..+...+++++|++++..|.++.|.++.+..+...+..++..+......+.....+.++..++
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 431 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPI 431 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567778889999999999999999999999999999999999999999999998888888773
No 61
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=98.42 E-value=0.00019 Score=62.06 Aligned_cols=100 Identities=12% Similarity=0.173 Sum_probs=69.5
Q ss_pred HHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy10468 8 INIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQ 87 (365)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~ 87 (365)
.......++..+.+.-..... .........++...+.........+.......+...++++++.++..+ +
T Consensus 18 ~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~ 87 (275)
T PF00664_consen 18 FPLLLGQIIDSLSSGNSDNNS------SLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLR----L 87 (275)
T ss_dssp HHHHHHHHHHHCTTTTSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----S
T ss_pred HHHHHHHHHHHHHcCCcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 344555566555444332111 123334445555566666666667778999999999999999999999 7
Q ss_pred ccccccccccchhhhhhhhhHHhhhhhhHH
Q psy10468 88 DIAFFDSTRTGELVDSAKPNIKNKLNPIHN 117 (365)
Q Consensus 88 ~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~ 117 (365)
|.+||+++++|++++++++|+++..+.+.+
T Consensus 88 ~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~ 117 (275)
T PF00664_consen 88 PYSYFDKNSSGELLSRITNDIEQIENFLSS 117 (275)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccccccccccccccccc
Confidence 999999999999999999998765444433
No 62
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.40 E-value=6.2e-05 Score=74.94 Aligned_cols=155 Identities=14% Similarity=0.054 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHH----------
Q psy10468 40 MKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIK---------- 109 (365)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~---------- 109 (365)
....+++.++..++.++-.++......++..+++.++-+++++. .--...... +|++++|+.+|-.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l-~~~~~~~~~---~g~~~~r~~~~~~i~~~~~~~~~ 272 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRL-PVRFFAQRH---AGDIASRVQLNDQVAEFLSGQLA 272 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHcCCc---ccHHHHHhhhHHHHHHHHHHHHH
Confidence 33445556666777888888888888888888888888887753 111111122 4788888877632
Q ss_pred -----------------------------------------------------hhhhhhHHHHHHHHHh-----hcc---
Q psy10468 110 -----------------------------------------------------NKLNPIHNHVIRMITG-----AFR--- 128 (365)
Q Consensus 110 -----------------------------------------------------~~~~~~~~~~~~~~~~-----~~~--- 128 (365)
+...+..+...|.+.| .+.
T Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 352 (710)
T TIGR03796 273 TTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLES 352 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCH
Confidence 2222334444444444 000
Q ss_pred --------------------------cccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy10468 129 --------------------------SSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLL 182 (365)
Q Consensus 129 --------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 182 (365)
...+...+..+...+++++|++++..|.++.|.++.+..+...+..++..+...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~ 432 (710)
T TIGR03796 353 DFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGF 432 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 013445566677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHH
Q psy10468 183 FGSYIKGLSSGARIFQ 198 (365)
Q Consensus 183 ~~~~~~~~~~~~~~~~ 198 (365)
...+.....+.+...+
T Consensus 433 ~~~~~~~~~~~~ri~~ 448 (710)
T TIGR03796 433 GGTLQELEGDLNRLDD 448 (710)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888888777
No 63
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.39 E-value=2.6e-05 Score=75.68 Aligned_cols=186 Identities=17% Similarity=0.259 Sum_probs=136.8
Q ss_pred chHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 2 ALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLF 81 (365)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 81 (365)
+++..++.+..|++++.++|.+..++ . ....+..+++..++.++..++..+...+...+++.++|.+++
T Consensus 28 ~~~~~~~~~~~p~~~~~iid~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 96 (585)
T TIGR01192 28 NITLAAITIAEPILFGRIIDAISSKS--------D---VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAF 96 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--------c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999886531 1 111222333445666777788888888888889999999999
Q ss_pred HHHhcCccccccccccchhhhhhhhhHHhhhh------------------------------------------------
Q psy10468 82 ESILKQDIAFFDSTRTGELVDSAKPNIKNKLN------------------------------------------------ 113 (365)
Q Consensus 82 ~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~------------------------------------------------ 113 (365)
++++++|++||+++++|++++++++|++...+
T Consensus 97 ~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 176 (585)
T TIGR01192 97 GRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLV 176 (585)
T ss_pred HHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874333
Q ss_pred ----------------hhHHHHHHHHHh-----hccc-----------------------------ccHHHHHHHHHHHH
Q psy10468 114 ----------------PIHNHVIRMITG-----AFRS-----------------------------SPLNSIHAESMVLG 143 (365)
Q Consensus 114 ----------------~~~~~~~~~~~~-----~~~~-----------------------------~~~~~~~~~~~~~~ 143 (365)
.+.+.+.|.+.| ++.. ..+...+..+...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (585)
T TIGR01192 177 MQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMC 256 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333 0100 02233344556677
Q ss_pred HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10468 144 TLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 198 (365)
++++|++++.+|.++.|.++.+..+...+..++..+......+.....+.+...+
T Consensus 257 v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~ 311 (585)
T TIGR01192 257 ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFD 311 (585)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999988888777766666555
No 64
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.37 E-value=3.2e-05 Score=74.60 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=123.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 4 LVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFES 83 (365)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 83 (365)
+.+...+..|.+++.++|..... ....++. +++..++..++.++..++.++.+.++.+++|.++++|
T Consensus 29 ~~~~~~~~~~~~i~~~i~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ 95 (555)
T TIGR01194 29 AGGLAIIALLASINNAIHEENFL---------GQGSLFS----FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEK 95 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc---------cchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777776632111 0011222 2234455667888899999999999999999999999
Q ss_pred HhcCccccccccccchhhhhhhhhHHhhhh--------------------------------------------------
Q psy10468 84 ILKQDIAFFDSTRTGELVDSAKPNIKNKLN-------------------------------------------------- 113 (365)
Q Consensus 84 i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~-------------------------------------------------- 113 (365)
++++|++||+++++|++++|+++|++...+
T Consensus 96 l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~ 175 (555)
T TIGR01194 96 ILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMG 175 (555)
T ss_pred HHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984333
Q ss_pred -------------hhHHHHHHHHHh-----hccc--c-----------------------------cHHHHHHHHHHHHH
Q psy10468 114 -------------PIHNHVIRMITG-----AFRS--S-----------------------------PLNSIHAESMVLGT 144 (365)
Q Consensus 114 -------------~~~~~~~~~~~~-----~~~~--~-----------------------------~~~~~~~~~~~~~~ 144 (365)
.+.+.+.|.+.| .+.. + .....+......+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (555)
T TIGR01194 176 GFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCA 255 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 1100 0 00111111122222
Q ss_pred HHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10468 145 LYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLR 200 (365)
Q Consensus 145 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr 200 (365)
++++++ .+.++.|.++.+..+...+..|+..+......+.....+.++..++-
T Consensus 256 ~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll 308 (555)
T TIGR01194 256 LFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFG 308 (555)
T ss_pred HHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 26789999999999999999999999999999999999998887763
No 65
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.37 E-value=7.7e-05 Score=74.08 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhh------
Q psy10468 40 MKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLN------ 113 (365)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~------ 113 (365)
....+++.++..++.++-.++......++..+++.++-.++.+.=... ...-. |++++|+ +|++...+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~----G~~~~r~-~d~~~i~~~~~~~~ 263 (694)
T TIGR03375 190 AIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASV----GSFANQL-REFESVRDFFTSAT 263 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCCh----hHHHHHH-HHHHHHHHHHhhhH
Confidence 334455556667788888888888888888888888888888532222 12222 7788887 67773333
Q ss_pred ----------------------------------------------------------hhHHHHHHHHHh-----hcc--
Q psy10468 114 ----------------------------------------------------------PIHNHVIRMITG-----AFR-- 128 (365)
Q Consensus 114 ----------------------------------------------------------~~~~~~~~~~~~-----~~~-- 128 (365)
+..+.+.|.+.| .+.
T Consensus 264 ~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 343 (694)
T TIGR03375 264 LTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAE 343 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccc
Confidence 333333343333 110
Q ss_pred ---------------------------cccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy10468 129 ---------------------------SSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSL 181 (365)
Q Consensus 129 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 181 (365)
...+...+......+++++|++.+..|.++.|.++.+..+...+..++..+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~ 423 (694)
T TIGR03375 344 GRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAG 423 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01244445556777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHH
Q psy10468 182 LFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ 198 (365)
....+.....+.++..+
T Consensus 424 ~~~~~~~~~~~~~ri~~ 440 (694)
T TIGR03375 424 LLTRYQQAKTALQSLDE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998888888777
No 66
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.36 E-value=3.7e-05 Score=73.84 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHH
Q psy10468 40 MKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHV 119 (365)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~ 119 (365)
....+++.++..++.++..+..+....+...+++.++-.++.+.=...- ... ++|++++++++|++...+.+.+.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~-~~~---~~g~~~~~l~~di~~i~~~~~~~~ 122 (529)
T TIGR02857 47 LGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWL-QGR---PSGELATLALEGVEALDGYFARYL 122 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh-ccC---ChHHHHHHHHhhHHHHHHHHHHHH
Confidence 4456666777788888999999999999999999999998886411111 112 469999999999985554443333
Q ss_pred HH----------------------------------------------------------------HHHh-----hccc-
Q psy10468 120 IR----------------------------------------------------------------MITG-----AFRS- 129 (365)
Q Consensus 120 ~~----------------------------------------------------------------~~~~-----~~~~- 129 (365)
.. .+.| .+..
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e 202 (529)
T TIGR02857 123 PQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRA 202 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHcccc
Confidence 33 2222 0000
Q ss_pred ----------------------------ccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy10468 130 ----------------------------SPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSL 181 (365)
Q Consensus 130 ----------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 181 (365)
......+..+...++..++++.+..|.++.+.++.+..+...+..++..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~ 282 (529)
T TIGR02857 203 KAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGA 282 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122223333444445566667778999999999999999899999999999
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy10468 182 LFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l 199 (365)
....+.....+.+...++
T Consensus 283 ~~~~~~~~~~~~~ri~~l 300 (529)
T TIGR02857 283 DYHARADGVAAAEALFAV 300 (529)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888888887774
No 67
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.35 E-value=8e-05 Score=72.31 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHH
Q psy10468 40 MKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHV 119 (365)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~ 119 (365)
....+++.++..++.++-.++.+....++..+++.++-.++++ .|.++|++.++|++.+++++|++...+.+.+.+
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~----~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~ 132 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG----LPVSFFDRQPTGTLLSRITFDSEQVASAATDAF 132 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777788888888999999999999999999999999 799999999999999999999985444443333
Q ss_pred HH----------------------------------------------------------------HHHh-----hcc--
Q psy10468 120 IR----------------------------------------------------------------MITG-----AFR-- 128 (365)
Q Consensus 120 ~~----------------------------------------------------------------~~~~-----~~~-- 128 (365)
.. .+.| .+.
T Consensus 133 ~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~ 212 (571)
T TIGR02203 133 IVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQ 212 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhccc
Confidence 33 3333 000
Q ss_pred ---------------------------cccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy10468 129 ---------------------------SSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSL 181 (365)
Q Consensus 129 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 181 (365)
...+...+..+...+++++|++.+..|.++.|.++.+..+...+..|+..+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~ 292 (571)
T TIGR02203 213 AYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTN 292 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 01234444556677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy10468 182 LFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l 199 (365)
....+...+.+.+...++
T Consensus 293 ~~~~~~~~~~~~~ri~~~ 310 (571)
T TIGR02203 293 VNAPMQRGLAAAESLFTL 310 (571)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999888888774
No 68
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.33 E-value=7.4e-05 Score=72.37 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=115.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCccccccccccchhhhhhhhhHH----
Q psy10468 38 SEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE----SILKQDIAFFDSTRTGELVDSAKPNIK---- 109 (365)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~----~i~~~~~~~f~~~~~g~l~~~~~~~~~---- 109 (365)
......+.++++..++++...+...+...+...+++.++..++.+ ...+.+.+. +++++++|++
T Consensus 53 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~--------l~~~~t~d~~~~~~ 124 (567)
T COG1132 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGD--------LISRLTNDVEAVSN 124 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcch--------HHHHHHhhHHHHHH
Confidence 445556666667778888877877777788888888887777654 345555454 4566777766
Q ss_pred ------------------------------------------------------------hhhhhhHHHHHHHHHh----
Q psy10468 110 ------------------------------------------------------------NKLNPIHNHVIRMITG---- 125 (365)
Q Consensus 110 ------------------------------------------------------------~~~~~~~~~~~~~~~~---- 125 (365)
+..+++++.+.|.++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~i 204 (567)
T COG1132 125 LVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVI 204 (567)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3333455555555555
Q ss_pred -hcc-----------------------------cccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHH
Q psy10468 126 -AFR-----------------------------SSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRS 175 (365)
Q Consensus 126 -~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 175 (365)
+|. ..++...+.......+++++.+.+..+.++.|.+..+..+...+..+
T Consensus 205 k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 284 (567)
T COG1132 205 KAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTP 284 (567)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHH
Confidence 110 01466677788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10468 176 MAQMSLLFGSYIKGLSSGARIFQLRC 201 (365)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~~~~~lr~ 201 (365)
+..+......+.....+.+...++..
T Consensus 285 ~~~l~~~~~~~~~~~~a~~ri~~~l~ 310 (567)
T COG1132 285 ILQLGEVVSLLQRASAAAERLFELLD 310 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988888888443
No 69
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.29 E-value=6.5e-05 Score=73.10 Aligned_cols=187 Identities=19% Similarity=0.278 Sum_probs=141.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 4 LVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFES 83 (365)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 83 (365)
+.++..+..|.+++.++|.+..+. ....+...+..+++..++..++.++..++..+.+.+...++|.+++++
T Consensus 36 ~~~~~~~~~~~~~~~~id~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 107 (582)
T PRK11176 36 LNAASDTFMLSLLKPLLDDGFGKA--------DRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGH 107 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888999999887531 112233334445557777888899999999999999999999999999
Q ss_pred HhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHH-----------------------------------------
Q psy10468 84 ILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRM----------------------------------------- 122 (365)
Q Consensus 84 i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 122 (365)
+.++|.++|+++++|++++++++|++...+.+...+...
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~ 187 (582)
T PRK11176 108 MMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSK 187 (582)
T ss_pred HHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984444444333332
Q ss_pred -----------------------HHh-----hcc-----------------------------cccHHHHHHHHHHHHHH
Q psy10468 123 -----------------------ITG-----AFR-----------------------------SSPLNSIHAESMVLGTL 145 (365)
Q Consensus 123 -----------------------~~~-----~~~-----------------------------~~~~~~~~~~~~~~~~~ 145 (365)
+.| .+. ...+...+......+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (582)
T PRK11176 188 RFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVL 267 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 000 01244445555677778
Q ss_pred HhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10468 146 YFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 146 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 198 (365)
++|++.+..|.++.|.+..+..+...+..++..+......+.....+.+...+
T Consensus 268 ~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 320 (582)
T PRK11176 268 YAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 320 (582)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999888999999999999888888877777665
No 70
>PRK12369 putative transporter; Reviewed
Probab=98.28 E-value=0.0013 Score=58.37 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=115.3
Q ss_pred HHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10468 6 AFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESIL 85 (365)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~ 85 (365)
..+++......+...|.+.+++.++++ .+.+..+..+..+++..++..+......++..+.+.+-++-+.+++.++-+
T Consensus 30 v~~~v~~n~w~~~fy~aL~~~~~~~~~--~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl 107 (326)
T PRK12369 30 VSLNVAINEWYGDFYDLLQKAKIEPNN--HTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWR 107 (326)
T ss_pred HHHhhhhhHHhHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566778888888875432222 256677777777777777777777788888887777777777777777733
Q ss_pred cCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhHHHH
Q psy10468 86 KQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSF 165 (365)
Q Consensus 86 ~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 165 (365)
..+
T Consensus 108 ~~~----------------------------------------------------------------------------- 110 (326)
T PRK12369 108 NKR----------------------------------------------------------------------------- 110 (326)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHHHHH
Q psy10468 166 LVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQG 245 (365)
Q Consensus 166 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~~~~ 245 (365)
+..|+. =+|+..|++...+........+
T Consensus 111 -----------------------------------------------~~iDNP-----DQRI~EDi~~f~~~tl~l~~~~ 138 (326)
T PRK12369 111 -----------------------------------------------DNIEGS-----SQRIQEDTYRFAKIMESLGLSF 138 (326)
T ss_pred -----------------------------------------------CCCCCc-----cHhHHHHHHHHHHHHHHHHHHH
Confidence 001111 2799999999999888888899
Q ss_pred HHHHHHHHHHHHHHHhhhhhH------------HHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHh
Q psy10468 246 LRNGAQVIGAVSSLLIISPSL------------TLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVT 304 (365)
Q Consensus 246 ~~~~~~~i~~~~~l~~~~~~l------------~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (365)
+.+++.++....++..++..+ ...+++...+...+..+.+|++.+...+.++.+++.=.
T Consensus 139 i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~ 209 (326)
T PRK12369 139 LRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRK 209 (326)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHH
Confidence 999999998888888877444 33345556666666677777777766666655555543
No 71
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.26 E-value=0.001 Score=60.51 Aligned_cols=90 Identities=14% Similarity=0.054 Sum_probs=65.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------HHHHHHhHHHHHHHHHHHHHHHhhH
Q psy10468 224 VDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPS-------------LTLGMLGIVPIVIISGTFIGSLLRS 290 (365)
Q Consensus 224 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-------------l~lv~l~~~~~~~~~~~~~~~~~~~ 290 (365)
=+|+..|++...+........++.++++++....++..++.. +..++++...+...+....++++.+
T Consensus 191 DQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~ 270 (409)
T PRK11098 191 AQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPG 270 (409)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 378899999998888888888999999999988888888865 3445556666666777778888777
Q ss_pred hHHHHHHHHHHHHhHHHHHhcch
Q psy10468 291 LSREAQNQAAKAVTIGEEAISNI 313 (365)
Q Consensus 291 ~~~~~~~~~~~~~~~~~e~l~gi 313 (365)
...+.++.+++.-..+...-++.
T Consensus 271 Lnf~qqr~EAdFR~~LVrvrena 293 (409)
T PRK11098 271 LEFKNQRVEAAYRKELVYGEDDA 293 (409)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhh
Confidence 77766666666555444333333
No 72
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.22 E-value=0.00022 Score=69.30 Aligned_cols=156 Identities=18% Similarity=0.273 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHH
Q psy10468 40 MKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHV 119 (365)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~ 119 (365)
+...+++.+...+..++-.++......++..+++.++-+++.+ +|.++|++.+.|++++++++|+++..+.+...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~----~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~ 136 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLIS----LSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSL 136 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556667777778888999999999999999999999 599999999999999999999996655443333
Q ss_pred HHHHHh---------------------------------------------------------------------hccc-
Q psy10468 120 IRMITG---------------------------------------------------------------------AFRS- 129 (365)
Q Consensus 120 ~~~~~~---------------------------------------------------------------------~~~~- 129 (365)
...+.+ .+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~ 216 (576)
T TIGR02204 137 SMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHE 216 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccC
Confidence 332211 0000
Q ss_pred ----------------------------ccHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy10468 130 ----------------------------SPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSL 181 (365)
Q Consensus 130 ----------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 181 (365)
..+...+......+++++|++.+..|.++.|.+..+..+...+..++..+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~ 296 (576)
T TIGR02204 217 DAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSE 296 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222334455667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy10468 182 LFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l 199 (365)
....+.....+.+...++
T Consensus 297 ~~~~~~~~~~~~~ri~~~ 314 (576)
T TIGR02204 297 VWGELQRAAGAAERLIEL 314 (576)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988888887663
No 73
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.17 E-value=0.00014 Score=70.78 Aligned_cols=185 Identities=15% Similarity=0.241 Sum_probs=134.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
++..++.+..|++++.++|.+..+ + ..+..+..+++..++..+..++......+..++.+.+++.++++
T Consensus 29 i~~~~~~~~~~~~~~~iid~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 97 (588)
T PRK13657 29 VLLAAATFAEPILFGRIIDAISGK--G---------DIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFE 97 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--c---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788899999999987653 1 12333344444455556667777777788888888899999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHH----------------------------------------
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRM---------------------------------------- 122 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 122 (365)
++.++|+++|+++++|++++++++|++...+.+.+.+.+.
T Consensus 98 ~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~ 177 (588)
T PRK13657 98 RIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVM 177 (588)
T ss_pred HHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999885444333333322
Q ss_pred ------------------------HHh-----hcc-----------------------------cccHHHHHHHHHHHHH
Q psy10468 123 ------------------------ITG-----AFR-----------------------------SSPLNSIHAESMVLGT 144 (365)
Q Consensus 123 ------------------------~~~-----~~~-----------------------------~~~~~~~~~~~~~~~~ 144 (365)
+.| .+. .......+......++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (588)
T PRK13657 178 RKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAI 257 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 000 0023334445567778
Q ss_pred HHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10468 145 LYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 145 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 198 (365)
+++|++.+.+|.++.|+++.+..+...+..++..+......+.......+...+
T Consensus 258 ~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~ 311 (588)
T PRK13657 258 LVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFE 311 (588)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999888888887766555554444
No 74
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.17 E-value=0.0007 Score=65.68 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHH
Q psy10468 42 EPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVI 120 (365)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 120 (365)
.++++.++..+++++..+..+....++..+++.++-+++.+.=. -..... ++|++++|+++|++...+.+...+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~-~~~~~~---~~g~~~srl~~Dv~~l~~~~~~~~~ 139 (574)
T PRK11160 65 GVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSP-AGLARY---RQGDLLNRLVADVDTLDHLYLRLIS 139 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-HhhccC---ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666778888888899999999999999999988875211 111112 2599999999998776655444433
No 75
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.08 E-value=0.0018 Score=63.18 Aligned_cols=77 Identities=9% Similarity=-0.117 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHH
Q psy10468 40 MKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHV 119 (365)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~ 119 (365)
...++++.++..++.++..+..+....+...+++.++-+++.+. ..-...... +|++++++++|++...+.+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~-~~~~~~~~~---~g~l~s~~~~dv~~i~~~~~~~~ 141 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQL-GPAWIQGKP---AGSWATLVLEQVEDMHDFYARYL 141 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhhccCC---HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33455556666777777788888888888888888888877753 111222223 37888888888876555544443
Q ss_pred H
Q psy10468 120 I 120 (365)
Q Consensus 120 ~ 120 (365)
.
T Consensus 142 ~ 142 (588)
T PRK11174 142 P 142 (588)
T ss_pred H
Confidence 3
No 76
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0018 Score=60.44 Aligned_cols=180 Identities=15% Similarity=0.102 Sum_probs=146.0
Q ss_pred HHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy10468 7 FINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILK 86 (365)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~ 86 (365)
.........+..+++.-... .-...+...++++++-.+..+.-..+...+...+...++..+-+++++
T Consensus 18 ~qa~llA~~l~~l~~~~~~~--------~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~---- 85 (559)
T COG4988 18 AQAALLADILTKLIEGQLFQ--------SLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAK---- 85 (559)
T ss_pred HHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 33445555565655553222 134556778888889999999999999999999999999999999999
Q ss_pred CccccccccccchhhhhhhhhHH---------------------------------------------------------
Q psy10468 87 QDIAFFDSTRTGELVDSAKPNIK--------------------------------------------------------- 109 (365)
Q Consensus 87 ~~~~~f~~~~~g~l~~~~~~~~~--------------------------------------------------------- 109 (365)
+++.+-+.+++|+..+.+...+|
T Consensus 86 ~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~ 165 (559)
T COG4988 86 LGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAK 165 (559)
T ss_pred CChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999
Q ss_pred -------hhhhhhHHHHHHHHHh----------------------------------hcccccHHHHHHHHHHHHHHHhh
Q psy10468 110 -------NKLNPIHNHVIRMITG----------------------------------AFRSSPLNSIHAESMVLGTLYFG 148 (365)
Q Consensus 110 -------~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 148 (365)
.....+++++.|.++| +|.+.....++..+....+..+.
T Consensus 166 ~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~ 245 (559)
T COG4988 166 DASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYI 245 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555777777777777 22234567777777888888777
Q ss_pred cccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10468 149 GHLMAS-NTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 149 ~~~v~~-~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 198 (365)
+..... |.++....+.++.+..-++.|++.+.+.++.-.....+.+....
T Consensus 246 g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~ 296 (559)
T COG4988 246 GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFT 296 (559)
T ss_pred HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 777777 79999999999999999999999999999999988888777777
No 77
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.97 E-value=0.00059 Score=66.54 Aligned_cols=155 Identities=17% Similarity=0.249 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhh------
Q psy10468 40 MKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLN------ 113 (365)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~------ 113 (365)
....+++.++..++.+...+..+....+...+++.++-.++.+ +|.++|+++++|++++++++|++...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~----~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~ 143 (592)
T PRK10790 68 AAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALR----QPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVV 143 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666778888889999999999999999999999999 699999999999999999999983333
Q ss_pred ----------------------------------------------------------hhHHHHHHHHHh-----hccc-
Q psy10468 114 ----------------------------------------------------------PIHNHVIRMITG-----AFRS- 129 (365)
Q Consensus 114 ----------------------------------------------------------~~~~~~~~~~~~-----~~~~- 129 (365)
+..+.+.|.+.| ++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~ 223 (592)
T PRK10790 144 ATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQ 223 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhh
Confidence 233333333333 1100
Q ss_pred ------------------------cc-----HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy10468 130 ------------------------SP-----LNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMS 180 (365)
Q Consensus 130 ------------------------~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~ 180 (365)
.. ....+..+...++.+.++. +..|.++.|.++.+..+...+..++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~ 302 (592)
T PRK10790 224 ARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELT 302 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111222222223333333 57899999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q psy10468 181 LLFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l 199 (365)
.....+.....+.+...++
T Consensus 303 ~~~~~~~~~~~s~~ri~~~ 321 (592)
T PRK10790 303 TQQSMLQQAVVAGERVFEL 321 (592)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888888887664
No 78
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.85 E-value=0.0095 Score=57.56 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=67.1
Q ss_pred HHHHHHhHH-HHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 4 LVAFINIQL-PLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82 (365)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 82 (365)
+.+++.+.. |++.+.++|.+... ...+...+++. ++..++.++..++..+.++++..++|.++++
T Consensus 24 ~~~~~~~~~~~~i~~~lid~~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~ 89 (547)
T PRK10522 24 ASAALGIGLIAFINQRLIETADTS----------LLVLPEFLGLL----LLLMAVTLGSQLALTTLGHHFVYRLRSEFIK 89 (547)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc----------chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455553 56677888865321 11121121111 2223466778888888999999999999999
Q ss_pred HHhcCccccccccccchhhhhhhhhHHhh
Q psy10468 83 SILKQDIAFFDSTRTGELVDSAKPNIKNK 111 (365)
Q Consensus 83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~ 111 (365)
+++++|+++|+++++|++++|+++|++..
T Consensus 90 ~ll~~~~~~~~~~~~g~~lsrl~~dv~~i 118 (547)
T PRK10522 90 RILDTHVERIEQLGSASLLASLTSDVRNI 118 (547)
T ss_pred HHHhCCHHHHhccCccchHHHHHhhHHHH
Confidence 99999999999999999999999998653
No 79
>KOG0060|consensus
Probab=97.69 E-value=0.0029 Score=58.88 Aligned_cols=203 Identities=12% Similarity=-0.054 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCc---cchhhhhhhhHHHHHHH
Q psy10468 161 DLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRT---GELVDRLTTDVQEFKSS 237 (365)
Q Consensus 161 ~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~---g~l~~~~~~d~~~i~~~ 237 (365)
+.+.....-+....+.......+..+....+..+...++.+-++++.++-..-|--++.. .+==+++++|++.....
T Consensus 119 ~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~ 198 (659)
T KOG0060|consen 119 ELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQ 198 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHH
Confidence 334444445555566666777777777777788888888888888777643322222211 22246899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhH
Q psy10468 238 FKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGML-GIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTV 316 (365)
Q Consensus 238 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~i 316 (365)
+.....+++...+.++-+..-++...++.+.+.+ .-..+..++.+.+.+.+.+..-++++...+.--.-++...|.+++
T Consensus 199 l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~i 278 (659)
T KOG0060|consen 199 LSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEI 278 (659)
T ss_pred HHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhh
Confidence 8777777777777777777766666655555444 444456666677777777777777777777766777888899999
Q ss_pred hhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhccccc
Q psy10468 317 RAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKKW 363 (365)
Q Consensus 317 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (365)
--|+.++.+..+.+...++..+...+...+.-....+.+++.+++.+
T Consensus 279 AFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~i 325 (659)
T KOG0060|consen 279 AFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGI 325 (659)
T ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998888888888877777666666666666655554433
No 80
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.056 Score=48.38 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHH
Q psy10468 48 VGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMIT 124 (365)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (365)
++...+-.+.+.+.......++++.-+++|.++.+|++.-|++-+++-++++++.++++|++++. .-.+..+|..|
T Consensus 55 ~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~q 130 (546)
T COG4615 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHH
Confidence 33334444556667888888899999999999999999999999999999999999999999876 44455555554
No 81
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.46 E-value=0.026 Score=54.49 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy10468 135 IHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLR 200 (365)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr 200 (365)
.+......+++++|++++..|.++.|.++.+..+...+..++..+......+.....+.++..++-
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 298 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELL 298 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667788899999999999999999999999999999999999999999998888887743
No 82
>KOG0064|consensus
Probab=97.35 E-value=0.13 Score=47.86 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=82.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH----HhhHhHHHHHHHHH
Q psy10468 225 DRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS----LLRSLSREAQNQAA 300 (365)
Q Consensus 225 ~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 300 (365)
+.+|.|+....+...+...++..-++-++.....+.--+...+.-......+.+.+...+.| +..+...++.....
T Consensus 221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g 300 (728)
T KOG0064|consen 221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG 300 (728)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 56788888888888887777777777766666555554443332222233333333333444 44444444444444
Q ss_pred HHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHH
Q psy10468 301 KAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354 (365)
Q Consensus 301 ~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (365)
.+-..=+..++|.++|--|+.++.+.++.++..+..........+....+..+-
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMle 354 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLE 354 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566788899999999999999999999888887766554443333333333
No 83
>KOG0057|consensus
Probab=96.40 E-value=0.57 Score=43.99 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=115.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhhhHH
Q psy10468 38 SEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHN 117 (365)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~ 117 (365)
..+..+...=++..+++.+-..+......++......+.-..+.+ ++.++|.+..+|++.+.+......+..-+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~----ld~~~~~~~~tG~l~~~idRgsraI~~vl~~ 150 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMS----LDLSFFLSRGTGALNRIIDRGSRAISFVLSA 150 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHhhcCCCcchHHHHHHhhhhHHHHHHHH
Confidence 345556666677777777777777777777777888888888888 8999999999999999998877633333332
Q ss_pred HHH-----------------------------------------------------------------HHHHh-----hc
Q psy10468 118 HVI-----------------------------------------------------------------RMITG-----AF 127 (365)
Q Consensus 118 ~~~-----------------------------------------------------------------~~~~~-----~~ 127 (365)
.+. |.+.| +|
T Consensus 151 ~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsf 230 (591)
T KOG0057|consen 151 MVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSF 230 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHc
Confidence 222 22222 11
Q ss_pred ccc-----------------------------cHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHH
Q psy10468 128 RSS-----------------------------PLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQ 178 (365)
Q Consensus 128 ~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~ 178 (365)
.-| -....++......+.+.+...+..+.++.+.++....+.+.+..++..
T Consensus 231 NnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~ 310 (591)
T KOG0057|consen 231 NNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNF 310 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHH
Confidence 110 234446666777888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q psy10468 179 MSLLFGSYIKGLSSGARIFQL 199 (365)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~l 199 (365)
+...+..........+....+
T Consensus 311 Lg~vyr~~~q~l~Dm~~~~~l 331 (591)
T KOG0057|consen 311 LGSVYRELRQALTDMRTLFIL 331 (591)
T ss_pred HHHHHHHHHHHHHhHHHHHhh
Confidence 998888887776655554443
No 84
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.17 E-value=1.6 Score=43.40 Aligned_cols=159 Identities=10% Similarity=-0.110 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcchhcccccCcc----chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHh
Q psy10468 198 QLRCQLFESILKQDIAFFDSTRTG----ELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISP-SLTLGMLG 272 (365)
Q Consensus 198 ~lr~~l~~kll~~~~~~~~~~~~g----~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~lv~l~ 272 (365)
++|.++.+++.+..+..+...+.. ..-+..++=.+.++.+ .......+..++..+..++.....-+ .+...+.+
T Consensus 165 ~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i-~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l 243 (659)
T TIGR00954 165 RFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKF-CDSVVELYSNLTKPILDVILYSFKLLTALGSVGPA 243 (659)
T ss_pred HHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 344444444444444333333322 3444444555555555 44456666666666666665444444 47777767
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHh-cchHhHhhhcCchHHHHHhhHHhHHHHHHHhHhhHHhHHHH
Q psy10468 273 IVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAI-SNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQ 351 (365)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l-~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (365)
+..+++++.....+...+...+......+..+.+...+ +.+.-++.-...+.+....++..+...+. .+.........
T Consensus 244 ~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l-~~~~~~~~~~~ 322 (659)
T TIGR00954 244 GLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRL-VEHLNLIIKFR 322 (659)
T ss_pred HHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 77777777777777777766666655555554444443 35555555555554444444443333333 33333333344
Q ss_pred HHHHHHh
Q psy10468 352 AGTNLFL 358 (365)
Q Consensus 352 ~~~~~~~ 358 (365)
.....+.
T Consensus 323 ~~~~~~~ 329 (659)
T TIGR00954 323 FSYGFLD 329 (659)
T ss_pred HhHHHHH
Confidence 4444443
No 85
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.14 Score=46.23 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhh-----------------------------
Q psy10468 62 ISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKL----------------------------- 112 (365)
Q Consensus 62 ~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~----------------------------- 112 (365)
......+++...+.+--+.|.|+.++++.|+.++++|.+...+..+.+.+.
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 455667788899999999999999999999999999999888876654111
Q ss_pred ------------------------------------hhhHHHHHHHHHh-----hcccc---------------------
Q psy10468 113 ------------------------------------NPIHNHVIRMITG-----AFRSS--------------------- 130 (365)
Q Consensus 113 ------------------------------------~~~~~~~~~~~~~-----~~~~~--------------------- 130 (365)
...+..-.|.+-| .|..|
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 1222222222222 11100
Q ss_pred --------cHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10468 131 --------PLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQ 202 (365)
Q Consensus 131 --------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~ 202 (365)
-....++......+...+...+..+.++.|+++..-.+++....|+..+....+.+.......+...+++..
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 122335555666667778888889999999999999999999999999999999999999988888887666
Q ss_pred HHHHHHh
Q psy10468 203 LFESILK 209 (365)
Q Consensus 203 l~~kll~ 209 (365)
-.+.--+
T Consensus 243 ~~~v~d~ 249 (497)
T COG5265 243 EAEVSDA 249 (497)
T ss_pred chhhccC
Confidence 6555444
No 86
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=93.96 E-value=4 Score=35.72 Aligned_cols=144 Identities=11% Similarity=0.006 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccC-ccchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy10468 169 TQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTR-TGELVDRLTTDVQEFKSSFKLVVSQGLR 247 (365)
Q Consensus 169 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~-~g~l~~~~~~d~~~i~~~~~~~~~~~~~ 247 (365)
.+.+..+..........+....++.+....+.+.+.++.++-. .||.-.. .+++-|-=.+=.++++.+. .....+..
T Consensus 71 ~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~-~~~~~l~~ 148 (281)
T PF06472_consen 71 LFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFT-ESSLSLFL 148 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHH-HHHHHHHH
Confidence 3444555566667777888888888888888888888888877 6665444 3434444344444454443 34666667
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHh-HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchH
Q psy10468 248 NGAQVIGAVSSLLIISPSLTLGMLG-IVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIR 314 (365)
Q Consensus 248 ~~~~~i~~~~~l~~~~~~l~lv~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ 314 (365)
+++..+..++.....-|.++-.... ...++.++.....+.+.+...+....+.+..+.+-.....++
T Consensus 149 ~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r 216 (281)
T PF06472_consen 149 GLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLR 216 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHH
Confidence 7777777676666667776555544 777788888888888888888887777777666655554443
No 87
>KOG0056|consensus
Probab=91.99 E-value=0.58 Score=43.40 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10468 132 LNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 198 (365)
..+.+.+.+.++...++.+.+..+.++.|+++.+..++...+.|++-+.++.+....+....+...+
T Consensus 448 ~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfd 514 (790)
T KOG0056|consen 448 VQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFD 514 (790)
T ss_pred HhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHH
Confidence 3445667777888888999999999999999999999999999999999999999888877777666
No 88
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=83.64 E-value=31 Score=30.48 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=44.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------HHHHHHhHHHHHHHHHHHHHHHhhH
Q psy10468 224 VDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPS-------------LTLGMLGIVPIVIISGTFIGSLLRS 290 (365)
Q Consensus 224 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-------------l~lv~l~~~~~~~~~~~~~~~~~~~ 290 (365)
.+|+..|+-+...........++.++.+.+..+.+++-.+-. +....++...+..++....+.++-.
T Consensus 109 SQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPg 188 (315)
T PF05992_consen 109 SQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPG 188 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 468888888888877777778888888877777776555322 2223334444445555555555444
Q ss_pred hHHHHH
Q psy10468 291 LSREAQ 296 (365)
Q Consensus 291 ~~~~~~ 296 (365)
...+.+
T Consensus 189 Le~~nQ 194 (315)
T PF05992_consen 189 LEFNNQ 194 (315)
T ss_pred hhhhhH
Confidence 333333
No 89
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=74.92 E-value=36 Score=32.78 Aligned_cols=70 Identities=17% Similarity=-0.035 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHH--HHHHHHHHHhHHHHHhcchH
Q psy10468 245 GLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSRE--AQNQAAKAVTIGEEAISNIR 314 (365)
Q Consensus 245 ~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~l~gi~ 314 (365)
++.-++..+..+++.++.+|++..+.++++.+.+++..+..+..+..... ......+......+.+.+++
T Consensus 14 ~~~lI~~~iiliiv~f~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~~~~~al~nmP 85 (655)
T COG3887 14 FLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEKSLEEALTNMP 85 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344455667777788999998888877777777776666665554444 33445555666677777655
No 90
>PRK11677 hypothetical protein; Provisional
Probab=65.67 E-value=58 Score=24.84 Aligned_cols=18 Identities=17% Similarity=-0.164 Sum_probs=9.1
Q ss_pred hhHHHHHHhHHHHHHHHH
Q psy10468 264 PSLTLGMLGIVPIVIISG 281 (365)
Q Consensus 264 ~~l~lv~l~~~~~~~~~~ 281 (365)
|.++++.++++.+..++.
T Consensus 3 W~~a~i~livG~iiG~~~ 20 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVA 20 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555554444444443
No 91
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=58.77 E-value=0.97 Score=44.61 Aligned_cols=75 Identities=8% Similarity=-0.092 Sum_probs=45.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHh-----hHHhHHHHHHHh
Q psy10468 267 TLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLF-----TDQVSLSCTLQE 341 (365)
Q Consensus 267 ~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~-----~~~~~~~~~~~~ 341 (365)
++++++..++++++.....+..++.............+.+.|.+.++.+||..+.++.....| .+...+..+...
T Consensus 7 ~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v 86 (644)
T PRK10733 7 LWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNV 86 (644)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCC
Confidence 333333334444443333344444455555556677889999999999999999887766566 444444444433
No 92
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=54.99 E-value=87 Score=26.25 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=33.0
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcc
Q psy10468 260 LIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISN 312 (365)
Q Consensus 260 ~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 312 (365)
+..+++..++++.+....+.....+.++.++......|-+--......|.+.+
T Consensus 47 ~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 47 LLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 33333333444444455556667778888887777777766667777777664
No 93
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.85 E-value=93 Score=23.38 Aligned_cols=24 Identities=13% Similarity=-0.186 Sum_probs=11.3
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 263 SPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 263 ~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
-|..+++.++.+++...+...+.+
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 355555555444444444433333
No 94
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=51.03 E-value=1.4e+02 Score=24.58 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=44.6
Q ss_pred hhhhHHHHHHhHHH-HHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhH
Q psy10468 262 ISPSLTLGMLGIVP-IVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTD 331 (365)
Q Consensus 262 ~~~~l~lv~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~ 331 (365)
+.+.+.+.+++++. -++.+-+.+.+....+..+.....+++.+.-.+-+...+.=+.|+..+...++|.+
T Consensus 67 y~~~~~It~~llgs~slymfrwal~~lye~r~~r~~~~L~kLra~~rk~l~~LK~e~~y~aT~~ii~ky~e 137 (251)
T COG5415 67 YRPYLVITALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYSE 137 (251)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcc
Confidence 44555555544442 33333344445555555666666677777777788888888888888888888843
No 95
>PRK09458 pspB phage shock protein B; Provisional
Probab=50.26 E-value=74 Score=21.41 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=13.4
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHH
Q psy10468 263 SPSLTLGMLGIVPIVIISGTFIGSL 287 (365)
Q Consensus 263 ~~~l~lv~l~~~~~~~~~~~~~~~~ 287 (365)
..++.+.+++++|+-++.-+...++
T Consensus 7 ~~PliiF~ifVaPiWL~LHY~sk~~ 31 (75)
T PRK09458 7 AIPLTIFVLFVAPIWLWLHYRSKRQ 31 (75)
T ss_pred HHhHHHHHHHHHHHHHHHhhccccc
Confidence 3455555556666655555544443
No 96
>PHA03231 glycoprotein BALF4; Provisional
Probab=50.17 E-value=63 Score=32.76 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHH
Q psy10468 229 TDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSR 293 (365)
Q Consensus 229 ~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
+|...++..+...+...... +..++.-++-|.-||.-++.++++++..+++.....++.++..+
T Consensus 669 ~gLG~vGk~vg~vv~~v~ga-~~SiVsG~~sFl~NPFGg~~iillvia~vv~v~l~~rr~~~~~~ 732 (829)
T PHA03231 669 QGLGAVGKAVGNVVSGVAGA-VGSIVSGVISFLKNPFGGLAIGLLVIAVLVAVFLAYRRVRRLRQ 732 (829)
T ss_pred hhhhhhchhhhhhhhhHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 44555555544433333333 33344555567888887777776666666666666665554433
No 97
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=48.07 E-value=1.2e+02 Score=23.00 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=36.8
Q ss_pred ccCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhH
Q psy10468 217 STRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRS 290 (365)
Q Consensus 217 ~~~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~ 290 (365)
+-+.||.+..-..+...+...+...+.+++.-++..+..-.+ ...++...+..++...+.+++.+++.|+.++
T Consensus 51 ~~~~GD~V~v~i~~~~~~~aa~l~Y~lPll~li~g~~l~~~~-~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 51 GAKVGDRVEVEIPESSLLKAAFLVYLLPLLALIAGAVLGSYL-GGSELWAILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred CCCCCCEEEEEeccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356788777666665555544433333333332222222111 1225555666666666666666666655443
No 98
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=46.30 E-value=22 Score=26.93 Aligned_cols=21 Identities=5% Similarity=-0.210 Sum_probs=9.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHH
Q psy10468 264 PSLTLGMLGIVPIVIISGTFI 284 (365)
Q Consensus 264 ~~l~lv~l~~~~~~~~~~~~~ 284 (365)
|.+.+++++++++++++....
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 99
>PRK12369 putative transporter; Reviewed
Probab=40.64 E-value=2.7e+02 Score=24.99 Aligned_cols=80 Identities=4% Similarity=-0.085 Sum_probs=57.9
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhHHhhhhh
Q psy10468 35 SFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNP 114 (365)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~ 114 (365)
++++.+...+++.++.......-.++...+..+-.+-+++++-++.++ ..+-. ++|. .|++.|++.-.+.
T Consensus 61 ~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~-~~~~i-----DNPD----QRI~EDi~~f~~~ 130 (326)
T PRK12369 61 DFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRN-KRDNI-----EGSS----QRIQEDTYRFAKI 130 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-----CCcc----HhHHHHHHHHHHH
Confidence 488888888888888888888888888888888888888888888886 34422 3333 5777887766665
Q ss_pred hHHHHHHHHH
Q psy10468 115 IHNHVIRMIT 124 (365)
Q Consensus 115 ~~~~~~~~~~ 124 (365)
..+.....++
T Consensus 131 tl~l~~~~i~ 140 (326)
T PRK12369 131 MESLGLSFLR 140 (326)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 100
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.07 E-value=1.9e+02 Score=28.34 Aligned_cols=57 Identities=4% Similarity=-0.031 Sum_probs=33.7
Q ss_pred HHHHHHhhHhHHHHHHH-HHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHH
Q psy10468 282 TFIGSLLRSLSREAQNQ-AAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCT 338 (365)
Q Consensus 282 ~~~~~~~~~~~~~~~~~-~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~ 338 (365)
.++.|+..+.-....+. ..-...-+.+-+.-++.++..|......++|++..++...
T Consensus 21 ~~~rr~~~~~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~ 78 (569)
T PRK04778 21 LILRKRNYKRIDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVT 78 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHH
Confidence 44444444433333333 3333456777788888888877777777777666665433
No 101
>PRK09609 hypothetical protein; Provisional
Probab=37.48 E-value=3e+02 Score=24.49 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHHHHHH
Q psy10468 261 IISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQ 340 (365)
Q Consensus 261 ~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~ 340 (365)
.++|..++...+.+.++.++...+.|..++...++.+...--++. |..+..-.....+.++.-.+++++....+.+..
T Consensus 77 ~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~k~ 154 (312)
T PRK09609 77 VYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKESRIKRYDNKI--FKQKEQYDFALENPNSEKIQKIKQKIILLEKKK 154 (312)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 456788888777777777777666666665555444332222222 222221222333444434666666666555554
Q ss_pred hHh
Q psy10468 341 ERL 343 (365)
Q Consensus 341 ~~~ 343 (365)
.+.
T Consensus 155 ~~~ 157 (312)
T PRK09609 155 KKL 157 (312)
T ss_pred HHH
Confidence 443
No 102
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=37.43 E-value=1.5e+02 Score=22.73 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=13.0
Q ss_pred hhhhhH-HHHHHhHHHHHHHHHHHHHHHhhHh
Q psy10468 261 IISPSL-TLGMLGIVPIVIISGTFIGSLLRSL 291 (365)
Q Consensus 261 ~~~~~l-~lv~l~~~~~~~~~~~~~~~~~~~~ 291 (365)
-+||+. .+.++.++++++++.++..+++.+.
T Consensus 4 ~l~~~~~~~qli~Flil~~~l~kfl~kPi~~~ 35 (141)
T PRK08476 4 DVNPYLMLATFVVFLLLIVILNSWLYKPLLKF 35 (141)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345543 3333334444444444444444433
No 103
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=35.71 E-value=2.1e+02 Score=22.21 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=10.2
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHH
Q psy10468 263 SPSLTLGMLGIVPIVIISGTFIGSL 287 (365)
Q Consensus 263 ~~~l~lv~l~~~~~~~~~~~~~~~~ 287 (365)
||.+.+.++.++++++++.++..++
T Consensus 4 ~~~~~~~~i~Flil~~il~~~~~~p 28 (156)
T PRK05759 4 NGTLIGQLIAFLILVWFIMKFVWPP 28 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444444444444443333
No 104
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=33.24 E-value=3.4e+02 Score=28.88 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=38.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHh
Q psy10468 224 VDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLL 288 (365)
Q Consensus 224 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~ 288 (365)
+....+..+.+++.+......++..++ ++..+++++.-+|+.++++.+.+|+.++.........
T Consensus 316 ~~~~~d~s~~i~~~i~~l~~~~~~g~~-lv~~vl~lfl~~~r~~liv~~~IPisi~~t~~~m~~~ 379 (1021)
T PF00873_consen 316 ITIVYDQSEYIEESINNLISNLLIGII-LVVLVLLLFLRNWRSALIVALSIPISILGTFIFMYLF 379 (1021)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEechHHHHHHHHHHHHHHHHHhH-hhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444455565554443333333332 2333444455589999999999999888887776653
No 105
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=31.66 E-value=2.1e+02 Score=27.41 Aligned_cols=65 Identities=6% Similarity=-0.021 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHHH-HHHHhHHHHHhcchHhHhhhcCchHHHHHhhHHhHHH
Q psy10468 272 GIVPIVIISGTFIGSLLRSLSREAQNQA-AKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLS 336 (365)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~ 336 (365)
++.++.+.+..++.|+...+-.+..+.. .-.+.=+.|-++.+|-++.-|..+...+.|++.-++.
T Consensus 10 Vilv~~~~~g~~lRkk~~~rI~~LEe~K~el~~lPv~dEi~kVK~L~L~GQTe~~Fe~Wrq~W~di 75 (570)
T COG4477 10 VILVAAYAVGYLLRKKNYQRIDKLEERKNELLNLPVNDEISKVKKLHLTGQTETKFEEWRQKWDDI 75 (570)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCccHHHHHHHHHHHHHH
Confidence 3333444444455555444444444333 3345567888889999999998887777776554443
No 106
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=31.58 E-value=2.7e+02 Score=28.92 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q psy10468 247 RNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLR 289 (365)
Q Consensus 247 ~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~ 289 (365)
.....++...+.+|..||+-+++++..+|+..++.....+...
T Consensus 341 iEg~vlV~iVl~lFLgn~RsAli~~~~lPLS~li~f~~M~~~g 383 (1027)
T COG3696 341 IEGSVLVIIVLALFLGNFRSALIVIISLPLSLLIAFIVMNFFG 383 (1027)
T ss_pred HhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344556677778899999999999999999999988877643
No 107
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=30.31 E-value=5.5e+02 Score=25.41 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q psy10468 174 RSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQD 211 (365)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~ 211 (365)
..+.........++...+.-+...-+.+.+.++-++..
T Consensus 96 a~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~ 133 (604)
T COG4178 96 AGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR 133 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33344445557777777777777777777777777765
No 108
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=30.23 E-value=2.8e+02 Score=21.95 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=8.9
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy10468 268 LGMLGIVPIVIISGTFIGSL 287 (365)
Q Consensus 268 lv~l~~~~~~~~~~~~~~~~ 287 (365)
+++++++.+..++.....+.
T Consensus 17 i~v~~~~~~~~~~s~l~~~~ 36 (168)
T PF01956_consen 17 IVVFLIAILRGLISELLQKF 36 (168)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34444444444444444443
No 109
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=29.84 E-value=1.8e+02 Score=19.66 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=9.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHH
Q psy10468 264 PSLTLGMLGIVPIVIISGTFI 284 (365)
Q Consensus 264 ~~l~lv~l~~~~~~~~~~~~~ 284 (365)
+++.+.+++++|+-++.-+..
T Consensus 8 ~plivf~ifVap~WL~lHY~s 28 (75)
T PF06667_consen 8 VPLIVFMIFVAPIWLILHYRS 28 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 110
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=29.10 E-value=3.7e+02 Score=27.13 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 134 SIHAESMVLGTLYFGGHLM--ASNTLTAGDLMSFLVSTQMIQRSMAQMSLLF 183 (365)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~ 183 (365)
..+.++...++-.+||..+ .+..++.++.+..+......-+...++-..+
T Consensus 207 DAIAgiiI~~iNiiGGl~iGv~q~gm~~~eA~~~ytlLTIGDGLVsQIPaLl 258 (697)
T PRK06012 207 DAIAGILITVINIIGGLIIGVVQHGMSFGEAAETYTLLTIGDGLVSQIPALL 258 (697)
T ss_pred cHHHHHHHHHHHHHhhhheeehccCCCHHHHHhhhheeeechhHHHHHHHHH
Confidence 3355566666666666644 4667888887777666555444444444333
No 111
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=29.04 E-value=3.5e+02 Score=27.13 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 136 HAESMVLGTLYFGGHLM--ASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFG 184 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~ 184 (365)
+.++...++-.+||..+ .+..++.++.+..+......-+...++-..+-
T Consensus 192 IAGiiI~~INiiGGl~IGv~q~gms~~eA~~~YtlLTIGDGLVsQIPALli 242 (678)
T TIGR01398 192 IAGIIITLINIIGGLIIGVVQHGMSLSDAASTYTILTIGDGLVAQIPALII 242 (678)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhheeeechhHHHHHHHHHH
Confidence 44555555555555533 56778888877776665555454444444333
No 112
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=28.63 E-value=2.7e+02 Score=21.32 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=36.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468 264 PSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME 322 (365)
Q Consensus 264 ~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~ 322 (365)
+++.++.+.+..+.+++..+++....+..++.+.-++...+..+.+...++.+.+-|..
T Consensus 33 ~~l~LlsLgl~~LLLV~IcVigsQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G~s 91 (138)
T PF03954_consen 33 PRLLLLSLGLSLLLLVVICVIGSQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGS 91 (138)
T ss_pred chHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccc
Confidence 33444444444444455555555566677777777777777777777777777665544
No 113
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=28.16 E-value=5.6e+02 Score=24.80 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy10468 131 PLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198 (365)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 198 (365)
..+-.+..+.-..++-.|.++++.+.+|.|.+++.-.++.-.+.|+.....-.+++...+-+.++..+
T Consensus 247 ~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~ 314 (580)
T COG4618 247 ALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNE 314 (580)
T ss_pred HHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888999999999999999999999999999999999999999999999999988888887
No 114
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.99 E-value=3e+02 Score=21.57 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhHhHHHHHH
Q psy10468 279 ISGTFIGSLLRSLSREAQN 297 (365)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~ 297 (365)
++......+.++..++...
T Consensus 16 i~~~~~~~kl~kl~r~Y~~ 34 (151)
T PF14584_consen 16 ILIIILNIKLRKLKRRYDA 34 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 115
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=27.87 E-value=3.7e+02 Score=26.94 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 134 SIHAESMVLGTLYFGGHLM--ASNTLTAGDLMSFLVSTQMIQRSMAQMSLLF 183 (365)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~ 183 (365)
..+.++...++-.+||..+ .+..++.++....+......-+...++-..+
T Consensus 186 DAIAGiiI~~INiiGGl~IGv~q~gms~~eA~~~YtlLTIGDGLVsQIPaLl 237 (677)
T TIGR01399 186 DAIAGIIIVLINIIGGISIGVTQHGMSASEALHLYTVLTIGDGLVSQIPALL 237 (677)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHhhhheeeechhHHHHHHHHH
Confidence 3355555566666665543 5667787777776666555444444444333
No 116
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.37 E-value=2e+02 Score=19.42 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=10.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHH
Q psy10468 265 SLTLGMLGIVPIVIISGTFIGSL 287 (365)
Q Consensus 265 ~l~lv~l~~~~~~~~~~~~~~~~ 287 (365)
++.+++++++|+-.+.-+...++
T Consensus 9 Pliif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 9 PLIIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444455444444443333
No 117
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=27.33 E-value=2.8e+02 Score=27.76 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 133 NSIHAESMVLGTLYFGGHLM--ASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFG 184 (365)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~ 184 (365)
...+.++...++-.+||..+ .++.++.++.+..+......-+...++-..+-
T Consensus 197 GDAIAGiiI~~INiiGGl~IGv~q~gm~~~eA~~~YtlLTIGDGLVsQIPALli 250 (675)
T PRK12720 197 GDAIAGIIVILVNIIGGIIIGVMQHDMSASEAVNTYAVLSIGDGLCGQIPSLLI 250 (675)
T ss_pred ccHHHHHHHHHHHHHhhHhhhhhhcCCCHHHHHhhhheeeechhHHHHHHHHHH
Confidence 33455666666666666644 56778888887777665555444444444333
No 118
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=26.11 E-value=2.3e+02 Score=19.69 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHH
Q psy10468 250 AQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSR 293 (365)
Q Consensus 250 ~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
+..+...+..+..++..++-.+....+..+......+...+..+
T Consensus 9 l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~ 52 (100)
T PF03899_consen 9 LLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRVFRLAG 52 (100)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555567777777777777777777777777644443
No 119
>PRK15337 type III secretion system protein InvA; Provisional
Probab=25.96 E-value=3.6e+02 Score=27.06 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 136 HAESMVLGTLYFGGHLM--ASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFG 184 (365)
Q Consensus 136 ~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~ 184 (365)
+.++...++-.+||..+ .+..++.++.+..+...-..-+...++-..+-
T Consensus 198 IAGiiI~~INiiGGl~IGv~q~gm~~~eA~~~YtlLTIGDGLVsQIPALli 248 (686)
T PRK15337 198 IAGIIIIFVNLIGGISVGMTQHGMDLSSALSTYTILTIGDGLVAQIPALLI 248 (686)
T ss_pred HHHHHHHHHHHHHhHhhhhhcCCCCHHHHHhhhheeeechhHHHHHHHHHH
Confidence 44555555555555533 56778888877776665555444444444333
No 120
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=25.36 E-value=95 Score=22.91 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=4.2
Q ss_pred HHHhhHhHHHH
Q psy10468 285 GSLLRSLSREA 295 (365)
Q Consensus 285 ~~~~~~~~~~~ 295 (365)
.|..++..++.
T Consensus 20 iRPQkKr~Ke~ 30 (113)
T PRK06531 20 QRQQKKQAQER 30 (113)
T ss_pred echHHHHHHHH
Confidence 33333333333
No 121
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.89 E-value=3.6e+02 Score=21.50 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy10468 272 GIVPIVIISGTFIGSLLR 289 (365)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~ 289 (365)
.++++++++.++..+++.
T Consensus 27 nFliL~~lL~~~l~~pi~ 44 (173)
T PRK13453 27 TFIVLLALLKKFAWGPLK 44 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444344434433
No 122
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.47 E-value=2.4e+02 Score=27.93 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=33.4
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy10468 219 RTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286 (365)
Q Consensus 219 ~~g~l~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~ 286 (365)
.+|-+++|..+|-+ +.+.+...+..--.......+.++.+..+.+.=.+..+++..+..+..+...+
T Consensus 259 AagiiVTR~~~~~s-~gq~l~~ql~~~p~~l~i~a~~l~~lg~iPG~P~~~f~~la~~l~~~~~~~~~ 325 (696)
T COG1298 259 AAGIIVTRVSTDES-LGQQLFTQLFANPKVLLIAAGVLFLLGLIPGMPHLPFLLLAGLLAFLAYLLSK 325 (696)
T ss_pred hhheEEEeccCccc-hHHHHHHHHHcCchHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhhh
Confidence 35677777766644 44443433443334444444444444444433334444555555555555544
No 123
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=22.33 E-value=4.6e+02 Score=26.43 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468 135 IHAESMVLGTLYFGGHLM--ASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFG 184 (365)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~ 184 (365)
.+.++...++-.+||..+ .+..++.++....+...-..-+...++-..+-
T Consensus 205 AIAGiiI~~INiiGGl~IGv~q~gms~~eA~~~YtlLTIGDGLVsQIPALli 256 (694)
T PRK12792 205 AIASLIIIAVNIFGGIIIGVTRHGMPLGQAADVFTKLSVGDGLVSQIPALIV 256 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhheeeechhHHHHHHHHHH
Confidence 355555666666666543 56778888877776665555455444444433
No 124
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.67 E-value=3.1e+02 Score=21.12 Aligned_cols=7 Identities=29% Similarity=0.083 Sum_probs=2.7
Q ss_pred hhHHHHH
Q psy10468 264 PSLTLGM 270 (365)
Q Consensus 264 ~~l~lv~ 270 (365)
|++.+++
T Consensus 23 Wwll~~l 29 (146)
T PF14316_consen 23 WWLLLAL 29 (146)
T ss_pred HHHHHHH
Confidence 3433333
No 125
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=21.25 E-value=2e+02 Score=17.28 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy10468 277 VIISGTFIGSLLRSLSREAQNQAAKA 302 (365)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (365)
++.=...+-|..+.-....-+++++.
T Consensus 18 y~~hmkrycrafrqdrdallear~kl 43 (54)
T PF13260_consen 18 YFCHMKRYCRAFRQDRDALLEARNKL 43 (54)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333344443333334444433
No 126
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.49 E-value=2.3e+02 Score=20.28 Aligned_cols=14 Identities=29% Similarity=0.138 Sum_probs=6.0
Q ss_pred HHHHhhHhHHHHHH
Q psy10468 284 IGSLLRSLSREAQN 297 (365)
Q Consensus 284 ~~~~~~~~~~~~~~ 297 (365)
+.|..+++.++.++
T Consensus 26 i~RPQrKr~K~~~~ 39 (97)
T COG1862 26 IIRPQRKRMKEHQE 39 (97)
T ss_pred hcCHHHHHHHHHHH
Confidence 44444444444443
Done!