RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10468
(365 letters)
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 178 bits (454), Expect = 4e-51
Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 17/247 (6%)
Query: 131 PLNSIHAESMVLGT--LYFGGHLMASNTLTAGDLMSFLVSTQ--MIQRSMAQMSLLFG-- 184
L + L + S G ++ + + ++ ++ L
Sbjct: 12 GLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAV 71
Query: 185 SYIKGLSSGARIF-----------QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQE 233
++ R++ +LR LF SIL+Q++AFFD TRTGEL++RL++D
Sbjct: 72 FLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTAL 131
Query: 234 FKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSR 293
S +S GLR GAQ +S + +SP+L +L +VP V I G LR L++
Sbjct: 132 LGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTK 191
Query: 294 EAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAG 353
Q+ A+A + EE I N+RTVRAF E E+ + +V L + F
Sbjct: 192 VTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 251
Query: 354 TNLFLNG 360
T L N
Sbjct: 252 TGLSGNL 258
Score = 95.4 bits (238), Expect = 1e-21
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 1 AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCV 60
+ + I++ P +LG II+++ + + + + L L +++ + +
Sbjct: 27 FLTMSSVISMSAPFFLGKIIDVIY-----TNPTVDYSDNLTRLCLGLSAVFLCGAAANAI 81
Query: 61 YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
+ L+ G+RI +LR LF SIL+Q++AFFD TRTGEL+
Sbjct: 82 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELI 122
Score = 64.2 bits (157), Expect = 2e-11
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 139 SMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198
+VL LY GG LM S +T G+L SFL+ + S+ +S + +KGL +G R+++
Sbjct: 258 LIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWE 317
Query: 199 L 199
L
Sbjct: 318 L 318
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 127 bits (321), Expect = 2e-32
Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 22/254 (8%)
Query: 122 MITGAFRSSPLNSIHAESMVLGTL--YFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQM 179
+I G + PL + + G + F S T ++ M
Sbjct: 58 IIHGV--ALPLMML-----IFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110
Query: 180 SLLF---------GSYIKGLS---SGARI-FQLRCQLFESILKQDIAFFDSTRTGELVDR 226
+ + +YI+ + R ++R + F +I+ Q+I +FD GEL R
Sbjct: 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTR 170
Query: 227 LTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGS 286
LT DV + + + A G LTL +L I P++ +S
Sbjct: 171 LTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAK 230
Query: 287 LLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVG 346
+L S + + + AKA + EE ++ IRTV AF + E+ + + + + L + +
Sbjct: 231 ILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAIT 290
Query: 347 VGMFQAGTNLFLNG 360
+ L +
Sbjct: 291 ANISMGAAFLLIYA 304
Score = 102 bits (257), Expect = 5e-24
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 2/184 (1%)
Query: 179 MSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTR--TGELVDRLTTDVQEFKS 236
++ + G + +LR +F+S+L+QD+++FD + TG L RL D + K
Sbjct: 764 ITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKG 823
Query: 237 SFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQ 296
+ ++ +N A + + LI LTL +L IVPI+ I+G +L + + +
Sbjct: 824 ATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDK 883
Query: 297 NQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNL 356
+ + I EAI N RTV + E ++ + + + G+ + T
Sbjct: 884 KELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQA 943
Query: 357 FLNG 360
+
Sbjct: 944 MMYF 947
Score = 70.5 bits (173), Expect = 2e-13
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 2 ALLVAFIN-IQLPLYL---GNIINILAKFTQDST------------AQLSFMSEMKEPAL 45
L A I+ + LPL + G++ + A S EM A
Sbjct: 53 GTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAY 112
Query: 46 KLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
G+ + + +S R K+R + F +I+ Q+I +FD GEL
Sbjct: 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELN 168
Score = 47.3 bits (113), Expect = 5e-06
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 1 AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCV 60
A++ + + ++ + +L + L + + +
Sbjct: 713 CAIINGGLQPAFSVIFSKVVGVF--TNGGPPETQ--RQNSNLFSLLFLILGIISFITFFL 768
Query: 61 YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTR--TGELV 101
GE + +LR +F+S+L+QD+++FD + TG L
Sbjct: 769 QGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALT 811
Score = 41.2 bits (97), Expect = 5e-04
Identities = 10/57 (17%), Positives = 23/57 (40%)
Query: 144 TLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLR 200
FG +L+ +T +++ + ++ Q+S Y K S + I ++
Sbjct: 952 AFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII 1008
Score = 37.7 bits (88), Expect = 0.007
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 139 SMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQ 198
S L ++G L+ S + G +++ S + S+ Q S ++ + +F+
Sbjct: 305 SYALA-FWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363
Query: 199 L 199
+
Sbjct: 364 I 364
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 123 bits (310), Expect = 3e-31
Identities = 37/138 (26%), Positives = 66/138 (47%)
Query: 196 IFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGA 255
+ +R +LF ++ +AFFD TG L+ R+T D ++ SS + +R GA +IG
Sbjct: 97 VMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGL 156
Query: 256 VSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRT 315
+ S L++ ++ + PIV I+ + RS+S+ QN + T E+ + +
Sbjct: 157 FIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKE 216
Query: 316 VRAFAMEPYEVRLFTDQV 333
V F + E + F
Sbjct: 217 VLIFGGQEVETKRFDKVS 234
Score = 63.4 bits (155), Expect = 4e-11
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 1 AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCV 60
A +L A + + L +++ F + + L +M L ++GL + + + + +
Sbjct: 33 ALILNAASDTFMLSLLKPLLDDG--FGKTDRSVLLWM------PLVVIGLMILRGITSYI 84
Query: 61 YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
+S + ++ +R +LF ++ +AFFD TG L+
Sbjct: 85 SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL 125
Score = 52.2 bits (126), Expect = 1e-07
Identities = 14/80 (17%), Positives = 37/80 (46%)
Query: 120 IRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQM 179
++M++ + S P+ + A + LY ++LTAG + S + R + +
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 180 SLLFGSYIKGLSSGARIFQL 199
+ + + +G+++ +F +
Sbjct: 302 TNVNAQFQRGMAACQTLFAI 321
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 118 bits (299), Expect = 1e-29
Identities = 32/137 (23%), Positives = 65/137 (47%)
Query: 196 IFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGA 255
+ Q+R +LF + + FFD TG L+ R+T D ++ + + +R GA +IG
Sbjct: 97 VMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGL 156
Query: 256 VSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRT 315
++ + S L+L ++ + P+V + +F+ R +SR Q + E+ + +
Sbjct: 157 LTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKV 216
Query: 316 VRAFAMEPYEVRLFTDQ 332
V ++ + E + F
Sbjct: 217 VLSYGGQEVERKRFDKV 233
Score = 62.6 bits (153), Expect = 7e-11
Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 1 AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCV 60
A ++ A + + L +++ F + L + ++GL + +
Sbjct: 33 ALVINAAADTYMISLLKPLLDEG--FGNAESNFLRIL------PFMILGLMFVRGLSGFA 84
Query: 61 YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
LS + + ++R +LF + + FFD TG L+
Sbjct: 85 SSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLL 125
Score = 49.9 bits (120), Expect = 8e-07
Identities = 10/80 (12%), Positives = 32/80 (40%)
Query: 120 IRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQM 179
+++++ + P+ + A + L+ LT G + + R + +
Sbjct: 242 MKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKAL 301
Query: 180 SLLFGSYIKGLSSGARIFQL 199
+ + + +G+++ +F L
Sbjct: 302 TSVTSEFQRGMAACQTLFGL 321
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 111 bits (281), Expect = 3e-27
Identities = 35/164 (21%), Positives = 69/164 (42%)
Query: 196 IFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGA 255
++ +R +L+ + F+ + + G+++ R+ DV++ K + + +I A
Sbjct: 93 LYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIA 152
Query: 256 VSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRT 315
+S + + LTL L I P I++ LR L+RE A+ E + I
Sbjct: 153 LSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISV 212
Query: 316 VRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLN 359
V++FA+E E + F + + T + A N +
Sbjct: 213 VKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTD 256
Score = 63.7 bits (156), Expect = 2e-11
Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 1 AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCV 60
++ I + +PL + I+ + T + L + + +
Sbjct: 22 VGIIKFGIPMLIPLLIKYAIDGVIN-NHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80
Query: 61 YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
L +I +R +L+ + F+ + + G+++
Sbjct: 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Score = 49.9 bits (120), Expect = 7e-07
Identities = 14/71 (19%), Positives = 33/71 (46%)
Query: 129 SSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIK 188
S + + + + G +L S ++T G L +F+ +++ + ++ F + +
Sbjct: 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306
Query: 189 GLSSGARIFQL 199
+S R+FQL
Sbjct: 307 SFASMDRVFQL 317
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 81.5 bits (202), Expect = 4e-17
Identities = 37/137 (27%), Positives = 63/137 (45%)
Query: 196 IFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGA 255
+F+LR +LFE + + + FFD T G+++ R+ DV + + Q + GA
Sbjct: 109 VFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGA 168
Query: 256 VSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRT 315
V + ++ L+L L IVP+ ++ + S R E Q + I EE IS +
Sbjct: 169 VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTV 228
Query: 316 VRAFAMEPYEVRLFTDQ 332
++ F E E+ F
Sbjct: 229 IKLFTREEKEMEKFDRV 245
Score = 52.6 bits (127), Expect = 1e-07
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 1 AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCV 60
+ + + + P +G I+++ + + L L +Y S+ +
Sbjct: 45 FVTVSSILGVLSPYLIGKTIDVVFVPRR--------FDLLPRYMLILGTIYALTSLLFWL 96
Query: 61 YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
++ L + + +LR +LFE + + + FFD T G+++
Sbjct: 97 QGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDII 137
Score = 38.3 bits (90), Expect = 0.003
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 147 FGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQL 199
FGG L + +T G + +F+ ++ R + ++S F L+S RIF++
Sbjct: 281 FGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEI 333
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 67.6 bits (166), Expect = 1e-12
Identities = 31/133 (23%), Positives = 61/133 (45%)
Query: 199 LRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSS 258
LR LF +L I+ + T L+ RLT DV + ++ +++ +R +G +
Sbjct: 98 LRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVM 157
Query: 259 LLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRA 318
+ I+ L+ ++ ++P +++ ++ L R+ Q + + E + +R VRA
Sbjct: 158 AVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRA 217
Query: 319 FAMEPYEVRLFTD 331
F E YE F
Sbjct: 218 FRREEYENENFRK 230
Score = 39.5 bits (93), Expect = 0.002
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 140 MVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARI 196
++ L+FGG L+ +N + G +M++ I S+ + + ++ +S R+
Sbjct: 260 GMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRV 316
Score = 28.3 bits (64), Expect = 4.6
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVF--TCV 60
++ ++ P L I++ S + + + ++ + + +V C
Sbjct: 33 VVEVICDLSQPTLLARIVDEGIARGD--------FSLVLKTGILMLIVALIGAVGGIGCT 84
Query: 61 YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELV 101
+ S + A LR LF +L I+ + T L+
Sbjct: 85 VFA--SYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLI 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 3e-06
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 52/169 (30%)
Query: 152 MASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQD 211
M + L+ ++ ++S + ++ LF + LS + Q + E +L+ +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTL----RLFWTL---LSKQEEMVQ---KFVEEVLRIN 90
Query: 212 IAFF-------------DSTRTGELVDRLTTDVQEFKSSFKLVVS-----QGLRNGAQVI 253
F + E DRL D Q F K VS LR
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQA---- 143
Query: 254 GAVSSLLIISPS--LTL-GMLGIVPIVIISG--TFIGSLLRSLSREAQN 297
LL + P+ + + G+LG SG + S + +
Sbjct: 144 -----LLELRPAKNVLIDGVLG-------SGKTWVALDVCLSYKVQCKM 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 57/331 (17%), Positives = 94/331 (28%), Gaps = 112/331 (33%)
Query: 48 VG----LY----VAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGE 99
G LY AQ V+ R + SIL DI
Sbjct: 1629 QGMGMDLYKTSKAAQDVW------------NRADNHFKDTYGFSIL--DI---------- 1664
Query: 100 LVDSAKPNIKNKLNP----IHN-----HVIRMITGA--FRSSPLNSIHAESMVLGTLYFG 148
+ N NP IH IR A F + + E + F
Sbjct: 1665 --------VIN--NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI------FK 1708
Query: 149 GHLMASNTLTAGDLMSFLVSTQMIQR-----SMAQMSLL-------FGSYIKGLS----- 191
S + T L +TQ Q A L + G S
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 192 ---SGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRN 248
S A + ES+++ + F+ R G + + +S++ ++ +
Sbjct: 1769 ALASLADVMS-----IESLVE--VVFY---R-GMTMQVAVPRDELGRSNYGMI---AINP 1814
Query: 249 GAQVIG----AVSSLLIISPSLTLGMLGIV----P--IVIISGTFIGSLLRSLSREAQNQ 298
G A+ ++ T ++ IV + +G LR+L +
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-----LRAL--DTVTN 1867
Query: 299 AAKAVTIGEEAISNIRTVRAFAMEPYEVRLF 329
I + I I ++ ++E E LF
Sbjct: 1868 VLNF--IKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 40.0 bits (93), Expect = 0.001
Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 77/247 (31%)
Query: 156 TLTAGDL-MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQD--- 211
TL+ G L LV T + F QL+ Q F IL +
Sbjct: 10 TLSHGSLEHVLLVPT----------ASFF-----------IASQLQEQ-FNKILPEPTEG 47
Query: 212 -------------IAFF--------DSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGA 250
+ F + ++ G+ L + EF++ + L G
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-------LE-GN 99
Query: 251 QVIGAVSSLLIISPSLTLGMLGIV----PIVIISGTFIGSLLRS-LSREAQNQAAKAVTI 305
+ + LL + + + ++ I++ S L R A+ V I
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 306 --G----EEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVG---MFQAGTNL 356
G ++ +R + + V + TL E + + +F G N+
Sbjct: 160 FGGQGNTDDYFEELRDL--YQTYHVLVGDLIK--FSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 357 FLNGKKW 363
+W
Sbjct: 216 ----LEW 218
Score = 36.2 bits (83), Expect = 0.018
Identities = 80/473 (16%), Positives = 127/473 (26%), Gaps = 204/473 (43%)
Query: 2 ALLVAFINIQLPLYL-----GNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSV 56
AL A L GN + + E+++ LY
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDD--------------YFEELRD-------LY----- 177
Query: 57 FTCVYISLLSGLGERIAAKLRCQLFESILKQDIAF---FD---------STRTGELVDSA 104
Y L+ L + A L +L + L + F + +T + + S
Sbjct: 178 --QTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 105 K---PNI-------------KNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFG 148
P I P + + GA + H++ +V
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTP--GELRSYLKGA-------TGHSQGLV------- 278
Query: 149 GHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQ------ 202
A SF VS + +++LF +I G +RC
Sbjct: 279 ---TAVAIAETDSWESFFVSVRKA------ITVLF--FI-----G-----VRCYEAYPNT 317
Query: 203 -LFESILKQDIAFFDSTRTGE-------LVDRLTTD-VQEF--------KSSFKLVVSQG 245
L SIL+ DS E + LT + VQ++ + ++ +S
Sbjct: 318 SLPPSILE------DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-- 369
Query: 246 LRNGAQ--VI--------GAVSSL---------------------------LII-----S 263
L NGA+ V+ G +L L + S
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 264 PSLT---------LGMLGI--------VPIVIISGTFIGSLLRSLSREAQNQAAKAVTIG 306
L L + +P+ TF GS LR LS + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVY---DTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 307 E---EAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERL--GVGVGMFQAGT 354
E + + P S L R G GV + AGT
Sbjct: 487 PVKWETTTQFKATHILDFGP-------GGASGLGVLTHRNKDGTGVRVIVAGT 532
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair,
DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A*
3s4w_A
Length = 1308
Score = 28.0 bits (61), Expect = 5.8
Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 14/194 (7%)
Query: 114 PIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQ 173
P V MI R+S + + G + FG LM S + +
Sbjct: 355 PQRTCVSTMILEVVRNS---VHSWDHVTQGLIEFGFILMDSYGPKKILDGKAVEIGTSLS 411
Query: 174 RSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQE 233
+ Q + G+ I L +I ++ Q + + S+ +D + +
Sbjct: 412 KMTNQHACKLGANI--LLETFKIHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMY 469
Query: 234 FKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIV-PIVIISGTFIGSLLRSLS 292
L+N ++V L + G+L V P++ IS + SL+ L
Sbjct: 470 --------APLILQNCSKVTETFDYLTFLPLQTVQGLLKAVQPLLKISMSMRDSLILVLR 521
Query: 293 REAQNQAAKAVTIG 306
+ A
Sbjct: 522 KAMFASQLDARKSA 535
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.376
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,169,117
Number of extensions: 302094
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 30
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)