RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10468
         (365 letters)



>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
           MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 319

 Score = 51.1 bits (120), Expect = 8e-08
 Identities = 15/87 (17%), Positives = 39/87 (44%)

Query: 113 NPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMI 172
           N +    ++M++ +  S P+  + A   +   LY        ++LTAG +     S   +
Sbjct: 226 NKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIAL 285

Query: 173 QRSMAQMSLLFGSYIKGLSSGARIFQL 199
            R +  ++ +   + +G+++   +F +
Sbjct: 286 MRPLKSLTNVNAQFQRGMAACQTLFAI 312


>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export
           ATP-binding/permease protein SAV1866 {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 323

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 14/87 (16%), Positives = 35/87 (40%)

Query: 113 NPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMI 172
                  ++       S    +   +   +  +  G +L  S ++T G L +F+   +++
Sbjct: 231 TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELL 290

Query: 173 QRSMAQMSLLFGSYIKGLSSGARIFQL 199
              + ++   F +  +  +S  R+FQL
Sbjct: 291 FGPLRRLVASFTTLTQSFASMDRVFQL 317



 Score = 26.4 bits (56), Expect = 6.1
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 14/302 (4%)

Query: 1   AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCV 60
             ++   I + +PL +   I+ +       T             + L    + +     +
Sbjct: 22  VGIIKFGIPMLIPLLIKYAIDGVIN-NHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80

Query: 61  YISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVI 120
              L      +I   +R +L+  +      F+ + + G+++     +++   + I   ++
Sbjct: 81  RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLM 140

Query: 121 RMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMS 180
            +           SI     V  TL                       T+   +++A++ 
Sbjct: 141 NIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQ 200

Query: 181 LLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKL 240
                 ++G+S          +      K       + +           +        +
Sbjct: 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPI 260

Query: 241 VVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAA 300
           +V             V + L IS S+T+G L     V       G L R ++       +
Sbjct: 261 IVI-----------GVGAYLAISGSITVGTL--AAFVGYLELLFGPLRRLVASFTTLTQS 307

Query: 301 KA 302
            A
Sbjct: 308 FA 309


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 27.8 bits (61), Expect = 1.5
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 23  LAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE 82
           L        A+L F +            Y  + +      ++  GL  R+  +L+    E
Sbjct: 117 LINVEGVGVAELLFNTIQAADIDTRSEFY--KHIVLSGGSTMYPGLPSRLERELKQLYLE 174

Query: 83  SILKQDIAFFDS 94
            +LK D+     
Sbjct: 175 RVLKGDVEKLSK 186


>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 291

 Score = 27.0 bits (59), Expect = 3.9
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 7/144 (4%)

Query: 95  TRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMAS 154
            R G +         N   P  +     +        LN    E + L     G H +  
Sbjct: 123 WRCGRVDTPEDTTPDNGRLPDADKDAGYVR--TFFQRLNMNDREVVAL----MGAHALGK 176

Query: 155 NTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAF 214
             L          +   +  +   ++LL   +     + A   Q   +    +L  D + 
Sbjct: 177 THLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLE-KNDANNEQWDSKSGYMMLPTDYSL 235

Query: 215 FDSTRTGELVDRLTTDVQEFKSSF 238
               +   +V     D  +F   F
Sbjct: 236 IQDPKYLSIVKEYANDQDKFFKDF 259


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.376 

Gapped
Lambda     K      H
   0.267   0.0344    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,191,825
Number of extensions: 50547
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 5
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.3 bits)