BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10469
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
F++AAE+VKNLK PA+DE+L IY YKQATVGD T
Sbjct: 5 FDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINT 41
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In
Tetragonal Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme
A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A
Binding Protein From Bovine Liver. Structural
Refinement Using Heteronuclear Multidimensional Nmr
Spectroscopy
Length = 86
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
F++AAE+VK+LK PA++E+L IY YKQATVGD T
Sbjct: 5 FDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINT 41
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human
L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human
L-Acbp
Length = 87
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
F +AAE+V++LK P+++E+L IYG YKQATVGD T
Sbjct: 6 FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 42
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded
Human Acbp
Length = 86
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
F +AAE+V++LK P+++E+L IYG YKQATVGD T
Sbjct: 5 FEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 41
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTA 42
F++AAEDV+ LK P + EL E+YGLYKQA VGD A
Sbjct: 8 FDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIA 45
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein
From Yeast
Length = 86
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDN 39
Q F + A+ V L P+ DELLE+Y LYKQATVGDN
Sbjct: 3 QLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDN 39
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 4 KFNQAAEDVKNL-KD---TPANDELLEIYGLYKQATVGD 38
KF++A E V++L KD P DE L Y +KQATVGD
Sbjct: 7 KFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGD 45
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVG 37
F + VK LK P N+ L++Y LYKQAT G
Sbjct: 20 FENSMNQVKLLKKDPGNEVKLKLYALYKQATEG 52
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 3 QKFNQAAEDVKNLKDT----PANDELLEIYGLYKQATVGD 38
++F A ++NL P+ +E+L Y YKQAT+G
Sbjct: 10 KQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGP 49
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 13 KNLKDTPANDELLEIYGLYKQATVG 37
KN P N+ +L+ Y YKQAT G
Sbjct: 40 KNGSFQPTNEMMLKFYSFYKQATEG 64
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 5 FNQAAEDVKNLKDTPA-NDELLEIYGLYKQATVGD 38
F+ A + V N A ND+ L Y YKQATVGD
Sbjct: 14 FDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGD 48
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGD-NTTAVSRY 46
F +AA ++ L + ++LL +Y YKQ VG+ NT S +
Sbjct: 12 FEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFF 54
>pdb|2H8R|A Chain A, Hepatocyte Nuclear Factor 1b Bound To Dna: Mody5 Gene
Product
pdb|2H8R|B Chain B, Hepatocyte Nuclear Factor 1b Bound To Dna: Mody5 Gene
Product
Length = 221
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 1 MFQKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVG 37
+ ++FNQ + N+ D + D+LL ++ + Q + G
Sbjct: 90 ILRQFNQTVQSSGNMTDKSSQDQLLFLFPEFSQQSHG 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,084,989
Number of Sequences: 62578
Number of extensions: 64339
Number of successful extensions: 206
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 13
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)