Query psy10469
Match_columns 75
No_of_seqs 119 out of 645
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:59:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00458 acyl CoA binding prot 99.9 2.1E-26 4.4E-31 147.0 5.6 65 1-67 1-67 (90)
2 cd00435 ACBP Acyl CoA binding 99.9 3.6E-25 7.7E-30 139.2 5.9 66 1-68 1-66 (85)
3 COG4281 ACB Acyl-CoA-binding p 99.9 2.7E-23 5.7E-28 131.2 5.5 63 1-65 2-64 (87)
4 KOG0817|consensus 99.9 2E-23 4.4E-28 142.5 4.8 58 3-62 7-64 (142)
5 PF00887 ACBP: Acyl CoA bindin 99.9 5.4E-23 1.2E-27 128.2 5.1 65 2-68 2-68 (87)
6 KOG3878|consensus 95.2 0.034 7.3E-07 43.8 4.6 54 3-56 34-93 (469)
7 PF00373 FERM_M: FERM central 74.6 9.6 0.00021 23.4 4.6 37 5-41 15-51 (126)
8 smart00295 B41 Band 4.1 homolo 64.6 16 0.00034 24.2 4.2 39 5-43 103-141 (207)
9 PHA03049 IMV membrane protein; 46.7 19 0.00041 22.1 2.1 35 23-57 15-51 (68)
10 PF04049 APC8: Anaphase promot 34.6 65 0.0014 21.5 3.4 28 3-32 88-115 (142)
11 PF09855 DUF2082: Nucleic-acid 33.2 9.1 0.0002 22.9 -0.8 20 46-66 26-45 (64)
12 PF15124 DUF4563: Domain of un 32.6 25 0.00054 25.1 1.2 14 23-36 159-172 (178)
13 PF10440 WIYLD: Ubiquitin-bind 31.0 45 0.00097 20.2 1.9 27 3-29 9-40 (65)
14 PTZ00396 Casein kinase II subu 29.7 68 0.0015 23.9 3.1 60 3-65 58-156 (251)
15 PF01754 zf-A20: A20-like zinc 28.9 21 0.00046 17.7 0.2 16 49-65 10-25 (25)
16 PF02204 VPS9: Vacuolar sortin 25.8 78 0.0017 18.9 2.4 22 5-26 1-22 (104)
17 KOG1954|consensus 24.9 1.4E+02 0.0031 24.5 4.3 45 2-46 197-251 (532)
18 COG4508 Dimeric dUTPase [Carbo 24.6 1E+02 0.0022 21.6 3.1 30 3-32 100-129 (161)
19 PRK14066 exodeoxyribonuclease 24.2 69 0.0015 19.5 2.0 27 3-29 4-35 (75)
20 smart00259 ZnF_A20 A20-like zi 23.5 33 0.00071 17.1 0.3 15 49-64 11-25 (26)
21 PRK05783 hypothetical protein; 23.1 32 0.00068 21.6 0.3 12 42-53 11-22 (84)
22 KOG3021|consensus 22.8 89 0.0019 24.0 2.7 31 4-36 258-288 (313)
23 PF02700 PurS: Phosphoribosylf 22.2 21 0.00046 21.9 -0.6 12 42-53 9-20 (80)
24 PF13512 TPR_18: Tetratricopep 21.1 85 0.0018 21.4 2.1 33 3-35 24-62 (142)
25 KOG4206|consensus 20.2 71 0.0015 23.6 1.6 24 11-34 13-37 (221)
No 1
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.93 E-value=2.1e-26 Score=147.01 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHhhcCC--CCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhccccc
Q psy10469 1 MFQKFNQAAEDVKNLKD--TPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTR 67 (75)
Q Consensus 1 ms~~F~~A~~~vk~l~~--~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~ 67 (75)
|++.|++|+++|++++. ++|+|++|+|||||||||+|||++++||+||+++|+||.+ |.++.+..
T Consensus 1 ~~~~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~A--W~~l~~ms 67 (90)
T PTZ00458 1 MADLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEA--WKSIENLN 67 (90)
T ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHH--HHHcCCCC
Confidence 88999999999999876 8999999999999999999999999999999999999997 88886654
No 2
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.92 E-value=3.6e-25 Score=139.24 Aligned_cols=66 Identities=35% Similarity=0.491 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 1 MFQKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 1 ms~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
|.+.|++|+++|++++..+|+|++|+|||||||||+|||+.++||+||++||+||.+ |.+|.+...
T Consensus 1 ~~~~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~A--W~~l~~ms~ 66 (85)
T cd00435 1 LQEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDA--WNSLKGMSK 66 (85)
T ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHH--HHHcCCCCH
Confidence 468999999999999999999999999999999999999999999999999999997 999877543
No 3
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.88 E-value=2.7e-23 Score=131.22 Aligned_cols=63 Identities=33% Similarity=0.546 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhccc
Q psy10469 1 MFQKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRH 65 (75)
Q Consensus 1 ms~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~ 65 (75)
||..|++|+..|+.|+.+|++|++|+||+||||+|+||.++.+||+|||+||.||.+ |.-=+|
T Consensus 2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eA--W~~LKG 64 (87)
T COG4281 2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEA--WAGLKG 64 (87)
T ss_pred hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHH--HhhccC
Confidence 578999999999999999999999999999999999999999999999999999997 765444
No 4
>KOG0817|consensus
Probab=99.88 E-value=2e-23 Score=142.52 Aligned_cols=58 Identities=47% Similarity=0.699 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhh
Q psy10469 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSK 62 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~ 62 (75)
+.|+.|++.+++++..|++|++|+|||||||||+|||++++||+||++||+||.+ |.+
T Consensus 7 ~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~A--W~~ 64 (142)
T KOG0817|consen 7 AKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQA--WNS 64 (142)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHH--HHh
Confidence 7999999999999999999999999999999999999999999999999999997 544
No 5
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.88 E-value=5.4e-23 Score=128.21 Aligned_cols=65 Identities=31% Similarity=0.366 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhhcCC--CCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 2 FQKFNQAAEDVKNLKD--TPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 2 s~~F~~A~~~vk~l~~--~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
.++|+.|+++|+.++. .+++|++|+|||||||||+|||+.++||+||+++|+||.+ |.++.|...
T Consensus 2 e~~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~A--W~~l~gms~ 68 (87)
T PF00887_consen 2 EEEFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDA--WKALKGMSK 68 (87)
T ss_dssp HHHHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHH--HHTTTTTHH
T ss_pred HHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHH--HHHccCCCH
Confidence 4789999999999999 9999999999999999999999999999999999999997 999887543
No 6
>KOG3878|consensus
Probab=95.24 E-value=0.034 Score=43.84 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCC---CCCHHHHHHHHHhhhhhccCCCCCC---CCCccccccchhhh
Q psy10469 3 QKFNQAAEDVKNLKD---TPANDELLEIYGLYKQATVGDNTTA---VSRYCQHRDEKSVV 56 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~---~~s~d~kL~LYglYKQAT~Gd~~~~---kPg~~d~~~raK~~ 56 (75)
+.+.-|..+.+.... .++.+++|+|-+|=||+-.|++|++ .-|+||+.|+-.--
T Consensus 34 ElY~LA~~fyKe~~GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~ 93 (469)
T KOG3878|consen 34 ELYRLAFTFYKENSGKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQ 93 (469)
T ss_pred HHHHHHHHHHHhccCCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHH
Confidence 345567777776543 6899999999999999999999974 45999999986543
No 7
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=74.63 E-value=9.6 Score=23.39 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCC
Q psy10469 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41 (75)
Q Consensus 5 F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~ 41 (75)
|..+...|-.-.=+.+.++-++|-||.-|+..||.+.
T Consensus 15 y~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~ 51 (126)
T PF00373_consen 15 YLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNS 51 (126)
T ss_dssp HHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCc
Confidence 4555555554444789999999999999999999883
No 8
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=64.58 E-value=16 Score=24.20 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCC
Q psy10469 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAV 43 (75)
Q Consensus 5 F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~k 43 (75)
|..+...+..-.-+.+.|+.+.|-||.-|+..||.+.+.
T Consensus 103 y~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~~ 141 (207)
T smart00295 103 YLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEEL 141 (207)
T ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChHh
Confidence 445555555444467899999999999999999988643
No 9
>PHA03049 IMV membrane protein; Provisional
Probab=46.74 E-value=19 Score=22.13 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCcc-cccc-chhhhh
Q psy10469 23 ELLEIYGLYKQATVGDNTTAVSRYC-QHRD-EKSVVE 57 (75)
Q Consensus 23 ~kL~LYglYKQAT~Gd~~~~kPg~~-d~~~-raK~~~ 57 (75)
.-|.+||.|-..+.-..+.|+|-.+ .+++ +++++.
T Consensus 15 i~lIvYgiYnkk~~~q~~~p~~e~ye~~e~~kT~yvD 51 (68)
T PHA03049 15 IGLIVYGIYNKKTTTSQNPPSQEKYEKMEDLKTGYVD 51 (68)
T ss_pred HHHHHHHHHhcccccCCCCCChhhccCchhhhhhHHh
Confidence 3578999998888777677666666 5555 555553
No 10
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=34.63 E-value=65 Score=21.53 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhh
Q psy10469 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYK 32 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~~~s~d~kL~LYglYK 32 (75)
.+|..|+.+++.-.+ +...-|.+|+.|-
T Consensus 88 kEy~RaA~~L~~~~s--~~~~FL~lYs~YL 115 (142)
T PF04049_consen 88 KEYDRAAHVLKDCKS--PKALFLRLYSRYL 115 (142)
T ss_pred hHHHHHHHHHccCCC--chHHHHHHHHHHH
Confidence 689999999987553 5566899999983
No 11
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=33.19 E-value=9.1 Score=22.93 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=17.2
Q ss_pred ccccccchhhhhhhhhhcccc
Q psy10469 46 YCQHRDEKSVVEVVCSKCRHT 66 (75)
Q Consensus 46 ~~d~~~raK~~~~~~~~~~~~ 66 (75)
+||+..+ +...+.|..|-+|
T Consensus 26 iFdvq~~-~f~~v~C~~CGYT 45 (64)
T PF09855_consen 26 IFDVQNK-KFTTVSCTNCGYT 45 (64)
T ss_pred EEEecCc-EEEEEECCCCCCE
Confidence 6899998 6777899999886
No 12
>PF15124 DUF4563: Domain of unknown function (DUF4563)
Probab=32.59 E-value=25 Score=25.12 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhhcc
Q psy10469 23 ELLEIYGLYKQATV 36 (75)
Q Consensus 23 ~kL~LYglYKQAT~ 36 (75)
.-|.|||.||-.|.
T Consensus 159 sILLLYA~YKKCtf 172 (178)
T PF15124_consen 159 SILLLYATYKKCTF 172 (178)
T ss_pred HHHHHHHHHhhhhe
Confidence 45789999998765
No 13
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=30.98 E-value=45 Score=20.15 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcCC-----CCCHHHHHHHHH
Q psy10469 3 QKFNQAAEDVKNLKD-----TPANDELLEIYG 29 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~-----~~s~d~kL~LYg 29 (75)
+++.+|.+.++.+.- .+.-..+|++|+
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~ 40 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLKLYD 40 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 688999999998752 456667788775
No 14
>PTZ00396 Casein kinase II subunit beta; Provisional
Probab=29.69 E-value=68 Score=23.92 Aligned_cols=60 Identities=22% Similarity=0.447 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCCCCCHH-----------HHHHHHHh------------------hhhhccCCCCC----C---CC-C
Q psy10469 3 QKFNQAAEDVKNLKDTPAND-----------ELLEIYGL------------------YKQATVGDNTT----A---VS-R 45 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~~~s~d-----------~kL~LYgl------------------YKQAT~Gd~~~----~---kP-g 45 (75)
..|..|.+.|.......+.+ +--.|||| |+++..|-|.- . -| |
T Consensus 58 ~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHARyI~T~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvG 137 (251)
T PTZ00396 58 PFYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALMREKYLQGKFGHCPRVLCEGQNVLPIG 137 (251)
T ss_pred cCHHHHHHHHcCCCCCccccccchhHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHhhCCCCCCCCCccCCCCcccccc
Confidence 35788888887654321111 11358887 89999999843 1 24 7
Q ss_pred ccccccc--hhhhhhhhhhccc
Q psy10469 46 YCQHRDE--KSVVEVVCSKCRH 65 (75)
Q Consensus 46 ~~d~~~r--aK~~~~~~~~~~~ 65 (75)
+-|..|. -|+. |.+|..
T Consensus 138 lSd~~g~~~VKly---CP~C~D 156 (251)
T PTZ00396 138 LSDVLKTSRVKVY---CPRCQE 156 (251)
T ss_pred cCCCcCcCceeEe---CCCchh
Confidence 7777655 4445 999974
No 15
>PF01754 zf-A20: A20-like zinc finger; InterPro: IPR002653 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in A20. A20 is an inhibitor of cell death that inhibits NF-kappaB activation via the tumour necrosis factor receptor associated factor pathway []. The zinc finger domains appear to mediate self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 2FIF_F 2FID_B 2C7N_C 2C7M_A 2L00_A 2KZY_A 2EQG_A 2EQE_A 3OJ3_J 3OJ4_C ....
Probab=28.87 E-value=21 Score=17.74 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=8.4
Q ss_pred cccchhhhhhhhhhccc
Q psy10469 49 HRDEKSVVEVVCSKCRH 65 (75)
Q Consensus 49 ~~~raK~~~~~~~~~~~ 65 (75)
+-|...+.+ .||+|++
T Consensus 10 f~Gs~~~~~-~Cs~C~~ 25 (25)
T PF01754_consen 10 FYGSPATNG-LCSKCYR 25 (25)
T ss_dssp SB-BGGGTT-S-HHHHH
T ss_pred CcccccccC-cchhhcC
Confidence 344555554 7999963
No 16
>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins.; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.
Probab=25.84 E-value=78 Score=18.90 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=13.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHH
Q psy10469 5 FNQAAEDVKNLKDTPANDELLE 26 (75)
Q Consensus 5 F~~A~~~vk~l~~~~s~d~kL~ 26 (75)
|++|++.++.+...-++-+||.
T Consensus 1 ~~~a~~~L~~i~~~~sP~~Kl~ 22 (104)
T PF02204_consen 1 WEKAIEELKKINSVKSPLEKLK 22 (104)
T ss_dssp -HHHHHHHHHGGG--SHHHHHH
T ss_pred CHHHHHHHHHccccCCHHHHHH
Confidence 5677777777766556666554
No 17
>KOG1954|consensus
Probab=24.92 E-value=1.4e+02 Score=24.48 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhcC----------CCCCHHHHHHHHHhhhhhccCCCCCCCCCc
Q psy10469 2 FQKFNQAAEDVKNLK----------DTPANDELLEIYGLYKQATVGDNTTAVSRY 46 (75)
Q Consensus 2 s~~F~~A~~~vk~l~----------~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~ 46 (75)
|++|+++.+.++... +....+++++.||..-....-=.|+|.|..
T Consensus 197 sdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~r 251 (532)
T KOG1954|consen 197 SDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSR 251 (532)
T ss_pred cHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCccee
Confidence 589999999988753 367889999999998776544467777654
No 18
>COG4508 Dimeric dUTPase [Carbohydrate transport and metabolism]
Probab=24.56 E-value=1e+02 Score=21.64 Aligned_cols=30 Identities=17% Similarity=0.495 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhh
Q psy10469 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYK 32 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~~~s~d~kL~LYglYK 32 (75)
++|-.....+..+-..+|.|.-+.||.+|-
T Consensus 100 EQFl~vFi~I~ef~~~~sk~~~~tlfs~yi 129 (161)
T COG4508 100 EQFLAVFISIAEFMKKPSKESILTLFSLYI 129 (161)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 677777777777778899999999999984
No 19
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.20 E-value=69 Score=19.53 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhh----c-CCCCCHHHHHHHHH
Q psy10469 3 QKFNQAAEDVKN----L-KDTPANDELLEIYG 29 (75)
Q Consensus 3 ~~F~~A~~~vk~----l-~~~~s~d~kL~LYg 29 (75)
..|+.|.+.+.. | .+.+|-|+-|.+|-
T Consensus 4 ~~fEeal~~LE~IV~~LE~g~l~Leesl~lye 35 (75)
T PRK14066 4 EKFETALKKLEEVVKKLEGGELSLDDSLKAFE 35 (75)
T ss_pred ccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 457777665554 4 34788888888884
No 20
>smart00259 ZnF_A20 A20-like zinc fingers. A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.
Probab=23.54 E-value=33 Score=17.09 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=9.4
Q ss_pred cccchhhhhhhhhhcc
Q psy10469 49 HRDEKSVVEVVCSKCR 64 (75)
Q Consensus 49 ~~~raK~~~~~~~~~~ 64 (75)
|-|...+.+ +||+|+
T Consensus 11 F~G~~~t~~-~CskCy 25 (26)
T smart00259 11 FFGNPATEG-LCSKCF 25 (26)
T ss_pred CcCChhhcc-cCHhhc
Confidence 345555554 799986
No 21
>PRK05783 hypothetical protein; Provisional
Probab=23.07 E-value=32 Score=21.60 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=10.7
Q ss_pred CCCCccccccch
Q psy10469 42 AVSRYCQHRDEK 53 (75)
Q Consensus 42 ~kPg~~d~~~ra 53 (75)
.|||++|.+|++
T Consensus 11 lK~gVlDPqG~a 22 (84)
T PRK05783 11 NKDSVRDPEGET 22 (84)
T ss_pred ECCCCcCchHHH
Confidence 589999999987
No 22
>KOG3021|consensus
Probab=22.84 E-value=89 Score=24.02 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhcc
Q psy10469 4 KFNQAAEDVKNLKDTPANDELLEIYGLYKQATV 36 (75)
Q Consensus 4 ~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~ 36 (75)
.|..|. -+.+++.+.-|+.|.||-||.--..
T Consensus 258 sF~naY--~k~ipka~G~eqR~~LYqLyhyLNH 288 (313)
T KOG3021|consen 258 SFYNAY--HKKIPKAPGFEQRLLLYQLYHYLNH 288 (313)
T ss_pred HHHHHH--hhhcCCCCcHHHHHHHHHHHHHhhh
Confidence 444443 3557888999999999999986654
No 23
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=22.20 E-value=21 Score=21.91 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=7.9
Q ss_pred CCCCccccccch
Q psy10469 42 AVSRYCQHRDEK 53 (75)
Q Consensus 42 ~kPg~~d~~~ra 53 (75)
.|||++|.+|++
T Consensus 9 ~K~gvlDPqG~a 20 (80)
T PF02700_consen 9 LKPGVLDPQGEA 20 (80)
T ss_dssp E-TTS--HHHHH
T ss_pred ECCCCcCcHHHH
Confidence 589999999987
No 24
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=21.12 E-value=85 Score=21.42 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhcCC-----CC-CHHHHHHHHHhhhhhc
Q psy10469 3 QKFNQAAEDVKNLKD-----TP-ANDELLEIYGLYKQAT 35 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~-----~~-s~d~kL~LYglYKQAT 35 (75)
..|++|++.+..|.. .. .+.++-..|++||+..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~ 62 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD 62 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC
Confidence 457788888877653 22 4556667799999854
No 25
>KOG4206|consensus
Probab=20.23 E-value=71 Score=23.59 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=18.3
Q ss_pred HHhhcCCCCCHHHHHH-HHHhhhhh
Q psy10469 11 DVKNLKDTPANDELLE-IYGLYKQA 34 (75)
Q Consensus 11 ~vk~l~~~~s~d~kL~-LYglYKQA 34 (75)
+|++|.++...|++.+ ||.||.|-
T Consensus 13 YInnLnekI~~~elkrsL~~LFsqf 37 (221)
T KOG4206|consen 13 YINNLNEKIKKDELKRSLYLLFSQF 37 (221)
T ss_pred eehhccccccHHHHHHHHHHHHHhh
Confidence 5777888777776665 99999874
Done!