Query psy10469
Match_columns 75
No_of_seqs 119 out of 645
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:59:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3epy_A Acyl-COA-binding domain 99.9 2E-27 7E-32 150.0 5.9 66 1-68 2-69 (89)
2 2cb8_A Acyl-COA-binding protei 99.9 2.1E-27 7.3E-32 149.1 5.1 67 1-69 1-68 (87)
3 1st7_A ACBP, acyl-COA-binding 99.9 3.3E-27 1.1E-31 147.7 5.7 66 1-68 1-66 (86)
4 1hbk_A ACBP, acyl-COA binding 99.9 5.5E-27 1.9E-31 147.5 4.7 65 2-68 3-69 (89)
5 2lbb_A Acyl COA binding protei 99.9 2.4E-27 8.3E-32 151.8 2.6 67 1-69 9-77 (96)
6 3fp5_A Acyl-COA binding protei 99.9 5E-26 1.7E-30 147.8 5.8 65 1-67 2-72 (106)
7 2cop_A Acyl-coenzyme A binding 99.9 8.3E-26 2.8E-30 147.1 5.7 65 2-68 9-73 (109)
8 2wh5_A Acyl-COA-binding domain 99.9 2.2E-25 7.7E-30 144.6 5.5 64 3-68 10-77 (106)
9 2cqu_A Peroxisomal D3,D2-enoyl 99.9 3.5E-25 1.2E-29 145.8 5.6 64 3-68 18-81 (116)
10 3flv_A Acyl-COA-binding domain 99.9 3.7E-25 1.3E-29 146.5 4.1 64 3-68 26-93 (119)
11 1mix_A Talin; focal adhesion, 95.1 0.047 1.6E-06 36.0 5.5 45 5-49 22-68 (206)
12 2ynq_A ESSB; membrane protein, 42.1 15 0.00052 24.8 2.3 26 4-34 88-113 (161)
13 1h4r_A Merlin; FERM, neurofibr 41.4 58 0.002 22.4 5.3 41 7-47 122-164 (314)
14 4f7g_A Talin-1; alpha-helix bu 39.9 60 0.002 21.4 5.0 37 6-42 34-70 (222)
15 1ef1_A Moesin; membrane, FERM 39.7 60 0.0021 22.0 5.1 42 6-47 101-144 (294)
16 4a54_B DCP2, mRNA decapping co 33.8 60 0.0021 17.8 3.5 33 15-47 9-42 (52)
17 3oj3_I Tumor necrosis factor a 31.2 6.4 0.00022 22.0 -0.8 19 49-68 28-46 (49)
18 3ivf_A Talin-1; FERM domain, c 29.9 1E+02 0.0035 21.8 5.1 37 6-42 188-224 (371)
19 3vrd_A FCCA subunit, flavocyto 28.7 57 0.002 20.6 3.3 52 17-69 59-110 (174)
20 2i1j_A Moesin; FERM, coiled-co 23.9 1.5E+02 0.005 23.0 5.4 41 7-47 105-147 (575)
21 3qij_A Protein 4.1; cytoskelet 23.8 1.2E+02 0.004 21.0 4.4 35 7-41 116-150 (296)
22 4dxa_B KREV interaction trappe 21.0 1.4E+02 0.005 20.6 4.5 42 6-47 119-162 (322)
23 2oud_A Dual specificity protei 20.2 1.7E+02 0.0058 18.3 4.8 53 4-56 116-171 (177)
No 1
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=99.94 E-value=2e-27 Score=149.96 Aligned_cols=66 Identities=36% Similarity=0.500 Sum_probs=62.2
Q ss_pred Ch--HHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 1 MF--QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 1 ms--~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
|| ++|++|++.|+.++..|++|++|+|||||||||+||||+++||+||++||+||.+ |.++.|...
T Consensus 2 m~L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~A--W~~l~g~s~ 69 (89)
T 3epy_A 2 MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEA--WNLKKGLST 69 (89)
T ss_dssp CHHHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHH--HHTTTTCCH
T ss_pred CcHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHH--HHHhhCCCH
Confidence 67 8999999999999999999999999999999999999999999999999999997 988877543
No 2
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=99.94 E-value=2.1e-27 Score=149.12 Aligned_cols=67 Identities=37% Similarity=0.524 Sum_probs=61.7
Q ss_pred Ch-HHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccCc
Q psy10469 1 MF-QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRGE 69 (75)
Q Consensus 1 ms-~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~~ 69 (75)
|+ ++|++|++.|+.++..||+|++|+|||||||||+|||++++||+||++||+||.+ |.++.+...+
T Consensus 1 m~~~~F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~A--W~~l~gms~e 68 (87)
T 2cb8_A 1 MSQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDA--WNELKGTSKE 68 (87)
T ss_dssp -CHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHH--HHTTTTCCHH
T ss_pred CcHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHH--HHHcCCCCHH
Confidence 66 8999999999999999999999999999999999999999999999999999997 9888776443
No 3
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.3e-27 Score=147.74 Aligned_cols=66 Identities=35% Similarity=0.493 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 1 MFQKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 1 ms~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
++++|++|+++|+.++..||+|++|+|||||||||+||||+++||+||++||+||.+ |.++.|...
T Consensus 1 l~~~F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~A--W~~l~gms~ 66 (86)
T 1st7_A 1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEA--WENLKGKSQ 66 (86)
T ss_dssp CHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHH--HHTTTTTHH
T ss_pred CHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHH--HHHcCCCCH
Confidence 458999999999999999999999999999999999999999999999999999997 988876543
No 4
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=99.93 E-value=5.5e-27 Score=147.48 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhhcC--CCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 2 FQKFNQAAEDVKNLK--DTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 2 s~~F~~A~~~vk~l~--~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
.++|++|+++|+.++ ..||+|++|+|||||||||+||||+++||+||++||+||.+ |.++.+...
T Consensus 3 ~~~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~A--W~~l~gms~ 69 (89)
T 1hbk_A 3 AQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA--WKSVENLNR 69 (89)
T ss_dssp HHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHH--HHHTTTCCH
T ss_pred HHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHH--HHHhcCCCH
Confidence 478999999999999 89999999999999999999999999999999999999997 988877544
No 5
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=99.93 E-value=2.4e-27 Score=151.84 Aligned_cols=67 Identities=30% Similarity=0.328 Sum_probs=62.3
Q ss_pred Ch-HHHHHHHHHHhhcC-CCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccCc
Q psy10469 1 MF-QKFNQAAEDVKNLK-DTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRGE 69 (75)
Q Consensus 1 ms-~~F~~A~~~vk~l~-~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~~ 69 (75)
|| ++|++|++.|++++ ..||+|++|+|||||||||+|||++++||+||++||+||.+ |.++.+...+
T Consensus 9 ~~~~~F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~A--W~~l~gmS~e 77 (96)
T 2lbb_A 9 MSADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEA--WNALRGMSTE 77 (96)
T ss_dssp CCSSTHHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHH--HHHTTTCCHH
T ss_pred cCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHH--HHHhcCCCHH
Confidence 56 89999999999999 99999999999999999999999999999999999999997 9888776543
No 6
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=99.92 E-value=5e-26 Score=147.80 Aligned_cols=65 Identities=29% Similarity=0.377 Sum_probs=60.3
Q ss_pred Ch--HHHHHHHHHHhhcCC----CCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhccccc
Q psy10469 1 MF--QKFNQAAEDVKNLKD----TPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTR 67 (75)
Q Consensus 1 ms--~~F~~A~~~vk~l~~----~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~ 67 (75)
|| ++|++|+++|+.++. +|++|++|+|||||||||+||||+++||+||++||+||.+ |.++.+..
T Consensus 2 ~~~~~~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~A--W~~l~gmS 72 (106)
T 3fp5_A 2 HMSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDA--WKSVEGTS 72 (106)
T ss_dssp CCCHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHH--HHTTTTCC
T ss_pred CchHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHH--HHHccCCC
Confidence 55 899999999999985 7999999999999999999999999999999999999997 98887654
No 7
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=8.3e-26 Score=147.09 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 2 FQKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 2 s~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
.++|++|+++|+.++..|++|++|+|||||||||+||||+++||+||++||+||.+ |.++.+...
T Consensus 9 ~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~A--W~~l~gms~ 73 (109)
T 2cop_A 9 AELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEA--WKALGDSSP 73 (109)
T ss_dssp HHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHH--HHSCTTCCH
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHH--HHHhcCCCH
Confidence 37899999999999999999999999999999999999999999999999999997 988876543
No 8
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.2e-25 Score=144.64 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcCC----CCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 3 QKFNQAAEDVKNLKD----TPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~----~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
++|++|++.|+.++. .|++|++|+|||||||||+|||++++||+||++||+||.+ |.++.|...
T Consensus 10 ~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~A--W~~l~gms~ 77 (106)
T 2wh5_A 10 KQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA--WNSLGKMSR 77 (106)
T ss_dssp HHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHH--HHTTTTCCH
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHH--HHHhcCCCH
Confidence 789999999999986 7999999999999999999999999999999999999997 988877543
No 9
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.5e-25 Score=145.79 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
++|++|++.|+.++..|++|++|+|||||||||+||||+++||+||++||+||.+ |.++.+...
T Consensus 18 ~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~A--W~~l~gms~ 81 (116)
T 2cqu_A 18 KDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDA--WNALGSLPK 81 (116)
T ss_dssp HHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHH--HHHHCSCCH
T ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHH--HHHhcCCCH
Confidence 8999999999999999999999999999999999999999999999999999997 988876543
No 10
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=99.91 E-value=3.7e-25 Score=146.47 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCC----CCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccC
Q psy10469 3 QKFNQAAEDVKNLKD----TPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 3 ~~F~~A~~~vk~l~~----~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~ 68 (75)
++|++|++.|+.++. .|++|++|+|||||||||+||||+++||+||++||+||.+ |.++.+...
T Consensus 26 ~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~A--W~~l~gmS~ 93 (119)
T 3flv_A 26 TRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA--WSSLGDMTK 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHH--HHHTTTCCH
T ss_pred HHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHH--HHHccCCCH
Confidence 799999999999875 7999999999999999999999999999999999999997 998877543
No 11
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=95.11 E-value=0.047 Score=36.02 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCC--CCCcccc
Q psy10469 5 FNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTA--VSRYCQH 49 (75)
Q Consensus 5 F~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~--kPg~~d~ 49 (75)
|.++...+-...-+.+.|+.+.|.||..||..||.+.+ .|+++++
T Consensus 22 y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~ 68 (206)
T 1mix_A 22 YVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLEL 68 (206)
T ss_dssp HHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCG
T ss_pred HHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCcccccCCccch
Confidence 45566555555557899999999999999999999875 4777654
No 12
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=42.10 E-value=15 Score=24.81 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhhhhh
Q psy10469 4 KFNQAAEDVKNLKDTPANDELLEIYGLYKQA 34 (75)
Q Consensus 4 ~F~~A~~~vk~l~~~~s~d~kL~LYglYKQA 34 (75)
.|++|.+..+.|.+ ..|.||||.|+-
T Consensus 88 ~~~eAlDiA~~L~D-----~qLilyAl~K~~ 113 (161)
T 2ynq_A 88 QSEEALELARTIED-----RDLIVYALLKYR 113 (161)
T ss_dssp CHHHHHHHHHHHTC-----HHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCc-----HHHHHHHHHHHH
Confidence 58889888887654 579999997764
No 13
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=41.36 E-value=58 Score=22.44 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCC--CCCcc
Q psy10469 7 QAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTA--VSRYC 47 (75)
Q Consensus 7 ~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~--kPg~~ 47 (75)
++...+-.-.-+.+.|+.+.|=||--||..||.+.. .|+.+
T Consensus 122 Q~~~dil~g~~~~~~e~a~~Laal~~Qa~~Gd~~~~~~~~~~~ 164 (314)
T 1h4r_A 122 QVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFL 164 (314)
T ss_dssp HHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTT
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHHHHHCCCCccccchhhc
Confidence 344333333336789999999999999999998764 35543
No 14
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=39.93 E-value=60 Score=21.36 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCC
Q psy10469 6 NQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTA 42 (75)
Q Consensus 6 ~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~ 42 (75)
..+...+-.-.-+.+.|+-+.|=||--||..||.+.+
T Consensus 34 lQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~~~ 70 (222)
T 4f7g_A 34 VQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQ 70 (222)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCCch
Confidence 3444444333336789999999999999999998764
No 15
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=39.68 E-value=60 Score=22.04 Aligned_cols=42 Identities=21% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCCC--CCcc
Q psy10469 6 NQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTAV--SRYC 47 (75)
Q Consensus 6 ~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~k--Pg~~ 47 (75)
.++...+-.-.-+.+.++.+.|=||--||..||.+... |+.+
T Consensus 101 ~Q~~~dil~g~~~~~~e~a~~Laal~~q~~~Gd~~~~~~~~~~l 144 (294)
T 1ef1_A 101 LQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYL 144 (294)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTT
T ss_pred HHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCCCccccChhhc
Confidence 34444443333367889999999999999999987643 5654
No 16
>4a54_B DCP2, mRNA decapping complex subunit 2; RNA binding protein-hydrolase complex; NMR {Schizosaccharomyces pombe}
Probab=33.77 E-value=60 Score=17.75 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=25.6
Q ss_pred cCCCCCHHHHHHHHHhhhhhcc-CCCCCCCCCcc
Q psy10469 15 LKDTPANDELLEIYGLYKQATV-GDNTTAVSRYC 47 (75)
Q Consensus 15 l~~~~s~d~kL~LYglYKQAT~-Gd~~~~kPg~~ 47 (75)
+.-..+.|.--+|..|.|-.|. .|..+|+|+-|
T Consensus 9 isvdvdadassqllsllksstapsdlatpqpstf 42 (52)
T 4a54_B 9 ISVDVDADASSQLLSLLKSSTAPSDLATPQPSTF 42 (52)
T ss_dssp CCCCCCHHHHHHHHHHHHCCCCSCSSSCCCCCCC
T ss_pred eeeeeccchHHHHHHHHhccCCcccccCCCCCCC
Confidence 3345677888899999999887 45777888877
No 17
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=31.24 E-value=6.4 Score=21.99 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=13.1
Q ss_pred cccchhhhhhhhhhcccccC
Q psy10469 49 HRDEKSVVEVVCSKCRHTRG 68 (75)
Q Consensus 49 ~~~raK~~~~~~~~~~~~~~ 68 (75)
|-|...|.+ +||||+.+..
T Consensus 28 FfG~p~t~n-~CSkCyre~~ 46 (49)
T 3oj3_I 28 YFGTPENKG-FCTLCFIEYR 46 (49)
T ss_dssp SBCBGGGTT-BCHHHHHHHH
T ss_pred CccCcccCC-cchHHHHHHH
Confidence 346666665 8999987643
No 18
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=29.90 E-value=1e+02 Score=21.83 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCC
Q psy10469 6 NQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTA 42 (75)
Q Consensus 6 ~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~ 42 (75)
..+...+-.-.-+.+.|+.+.|=||--||..||.+.+
T Consensus 188 ~Q~~~dil~G~~~c~~e~a~~LAAl~~qae~Gd~~~~ 224 (371)
T 3ivf_A 188 VQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQ 224 (371)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred HHhhHHHhCceeecCHHHHHHHHHHHHHHHhCCCChh
Confidence 3444444333335788999999999999999998764
No 19
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=28.66 E-value=57 Score=20.65 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHhhhhhccCCCCCCCCCccccccchhhhhhhhhhcccccCc
Q psy10469 17 DTPANDELLEIYGLYKQATVGDNTTAVSRYCQHRDEKSVVEVVCSKCRHTRGE 69 (75)
Q Consensus 17 ~~~s~d~kL~LYglYKQAT~Gd~~~~kPg~~d~~~raK~~~~~~~~~~~~~~~ 69 (75)
..++.++.-.|=+||..-...+...+.+. -++..-.+.....|..|-+..|.
T Consensus 59 ~~Ls~~di~~la~Y~~s~~~~~~~~~~~~-~~~~~g~~~~~~~Ca~CHg~~G~ 110 (174)
T 3vrd_A 59 KGYSTADFQKMAEYFKQQTYQPVKQSFDK-ALVAKGTKLHDKYCEKCHVESGK 110 (174)
T ss_dssp TTSCHHHHHHHHHHHHHSCCCCCCCCCCG-GGHHHHHHHHHHHTTTTSGGGGC
T ss_pred ccCCHHHHHHHHhhhhcccccccccccch-hhhccchhhhcchhHhhcCcCCC
Confidence 46889999999999987654433332222 22333334445689999987654
No 20
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.88 E-value=1.5e+02 Score=22.99 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCCC--CCCcc
Q psy10469 7 QAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTA--VSRYC 47 (75)
Q Consensus 7 ~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~~--kPg~~ 47 (75)
.+...|-.-.-+.+.++.+.|=||--|+..||.+.. .|+++
T Consensus 105 Qvk~dIl~G~l~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl 147 (575)
T 2i1j_A 105 QVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFL 147 (575)
T ss_dssp HHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCChhhcccccc
Confidence 344333333336788999999999999999998764 35654
No 21
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=23.78 E-value=1.2e+02 Score=21.01 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCC
Q psy10469 7 QAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41 (75)
Q Consensus 7 ~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~ 41 (75)
++...+-.-.=+.+.|+.+.|=||--||..||.+.
T Consensus 116 Q~~~dil~G~~~c~~e~a~~LAAl~~Qae~Gd~~~ 150 (296)
T 3qij_A 116 QLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDP 150 (296)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 33333333333568899999999999999999875
No 22
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=20.97 E-value=1.4e+02 Score=20.65 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhhhhhccCCCCC--CCCCcc
Q psy10469 6 NQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT--AVSRYC 47 (75)
Q Consensus 6 ~~A~~~vk~l~~~~s~d~kL~LYglYKQAT~Gd~~~--~kPg~~ 47 (75)
.++...+-.-.=+.+.|+.+.|=||--||..||.+. ..|+++
T Consensus 119 ~Q~~~dil~G~~~c~~e~a~~LAAl~~q~e~Gd~~~~~~~~~~l 162 (322)
T 4dxa_B 119 DEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFL 162 (322)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHCSCCHHHHSSSCS
T ss_pred HHHHHHHHCCcccCCHHHHHHHHHHHHHHHhCCCCccccccccc
Confidence 344444444334678899999999999999999864 245554
No 23
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=20.24 E-value=1.7e+02 Score=18.26 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCC--CCCHHHHHHHHHhhhhhccCC-CCCCCCCccccccchhhh
Q psy10469 4 KFNQAAEDVKNLKD--TPANDELLEIYGLYKQATVGD-NTTAVSRYCQHRDEKSVV 56 (75)
Q Consensus 4 ~F~~A~~~vk~l~~--~~s~d~kL~LYglYKQAT~Gd-~~~~kPg~~d~~~raK~~ 56 (75)
.+++|.++++.... .|+....-+|..|.++-..+. .+...|.++.++.-.|.+
T Consensus 116 ~~~~A~~~v~~~Rp~~~pn~~f~~qL~~~e~~l~~~~~~~~~~p~~~~~~~~~~~~ 171 (177)
T 2oud_A 116 TMTDAYKFVKGKRPIISPNLNFMGQLLEFEEDLNNGVTPRILTPKLMGVETVVKEA 171 (177)
T ss_dssp CHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHTSSCCCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCcCCCHHHHHHHHHHHHHHhcCCCCcccCcchhHHHHHHHHH
Confidence 36788888887654 455554445555555444433 334568888777666654
Done!