RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10469
         (75 letters)



>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters
          of long fatty acids and coenzyme A in a one-to-one
          binding mode with high specificity and affinity.
          Acyl-CoAs are important intermediates in fatty lipid
          synthesis and fatty acid degradation and play a role in
          regulation of intermediary metabolism and gene
          regulation. The suggested role of ACBP is to act as a
          intracellular acyl-CoA transporter and pool former.
          ACBPs are present in a large group of eukaryotic
          species and several tissue-specific isoforms have been
          detected.
          Length = 85

 Score = 63.5 bits (155), Expect = 3e-15
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 3  QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
          ++F  AAE VK LK  P+N+E L++Y LYKQATVGD  T
Sbjct: 3  EEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNT 41


>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein. 
          Length = 87

 Score = 60.3 bits (147), Expect = 5e-14
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 3  QKFNQAAEDVKNLKDT--PANDELLEIYGLYKQATVGDNTTA 42
          ++F  A + VK L     P+N+E L++Y LYKQAT GD  T 
Sbjct: 3  EEFEAAVKFVKKLPKDGRPSNEEKLKLYALYKQATEGDVNTP 44


>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism].
          Length = 87

 Score = 59.5 bits (144), Expect = 1e-13
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 1  MFQKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
          +  +F QA  DVK L + P+NDELL++Y L+KQ +VGDN  
Sbjct: 2  LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDG 42


>gnl|CDD|200416 TIGR04165, methano_modCys, Cys-rich peptide, TIGR04165 family.
          Members of this small peptide family occur strictly in
          a subset of archaeal methanogens. Members have four
          invariant Cys residues in two Cys-Xaa-Xaa-Cys-Gly
          motifs and may have other Cys residues as well. At
          least two members occur next to family TIGR04083
          radical SAM enzymes predicted to act in peptide or
          protein modification.
          Length = 50

 Score = 24.4 bits (53), Expect = 2.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 38 DNTTAVSRYCQHRDEKSVVEVVCSKCRH 65
          D T +     +H     + E+ CSKC +
Sbjct: 17 DKTVSRKFDDEHNAHAELGEIKCSKCGY 44


>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
           Present in two copies in mammalian adenylyl cyclases.
          Eubacterial homologues are known. Two residues (Asn,
          Arg) are thought to be involved in catalysis. These
          cyclases have important roles in a diverse range of
          cellular processes.
          Length = 194

 Score = 24.5 bits (54), Expect = 5.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 22 DELLEIYGLYKQATVGD 38
          D++++ +G YK  T+GD
Sbjct: 71 DQIIDRHGGYKVKTIGD 87


>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional.
          Length = 90

 Score = 23.6 bits (51), Expect = 10.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 1  MFQKFNQAAEDVKNLKDTP--ANDELLEIYGLYKQATVGD-NTTAVSRY 46
          M   F +    + +L  T   + +  L++Y  YKQ+TVG+ N    S +
Sbjct: 1  MADLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMF 49


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,436,197
Number of extensions: 238857
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)