RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10469
(75 letters)
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 61.8 bits (150), Expect = 9e-15
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
+F +AAE+V++LK P+++E+L IYG YKQATVGD T
Sbjct: 4 AEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 42
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport
protein; NMR {Saccharomyces cerevisiae}
Length = 86
Score = 59.1 bits (143), Expect = 8e-14
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTTA 42
Q F + A+ V L P+ DELLE+Y LYKQATVGDN
Sbjct: 3 QLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKE 42
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding
protein, fatty acid, lipid metabolism, structural
genomics; HET: COA PLM; 2.00A {Homo sapiens}
Length = 89
Score = 59.1 bits (143), Expect = 9e-14
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
F++AAEDV+ LK P + EL E+YGLYKQA VGD
Sbjct: 6 ADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINI 44
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 116
Score = 58.1 bits (140), Expect = 5e-13
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDN 39
+ F + VK LK P N+ L++Y LYKQAT G
Sbjct: 18 KDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPC 54
>2lbb_A Acyl COA binding protein; protein binding, structural genomi
seattle structural genomics center for infectious
disease,; NMR {Babesia bovis}
Length = 96
Score = 55.7 bits (134), Expect = 3e-12
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 3 QKFNQAAEDVKNL-KDTPANDELLEIYGLYKQATVGDN 39
F+ A + V N +ND+ L Y YKQATVGD
Sbjct: 12 DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDC 49
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding
protein, COA binding protein, lipid binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 109
Score = 54.7 bits (131), Expect = 8e-12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 3 QKFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
+ F +AA ++ L + ++LL +Y YKQ VG+ T
Sbjct: 10 ELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNT 48
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 52.2 bits (125), Expect = 6e-11
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 3 QKFNQAAEDVKNLKDT--PANDELLEIYGLYKQATVGDN 39
Q F + + L T N+ L++Y YKQ+T+G+
Sbjct: 4 QVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNC 42
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid
metabolism, lipid binding protein; HET: MES; 1.61A
{Moniliophthora perniciosa}
Length = 106
Score = 52.6 bits (126), Expect = 6e-11
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 3 QKFNQAAEDVKNLKDT----PANDELLEIYGLYKQATVGDNTT 41
KF++A E V++L P DE L Y +KQATVGD
Sbjct: 6 AKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNI 48
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding,
structural genomics, struct genomics consortium, SGC,
lipid-binding, membrane; HET: STE COA; 1.70A {Homo
sapiens}
Length = 119
Score = 52.0 bits (124), Expect = 1e-10
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 3 QKFNQAAEDVKNLKDT----PANDELLEIYGLYKQATVGDNTTA 42
+F A + +++L P N+ +L+ Y YKQAT G +
Sbjct: 26 TRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLS 69
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative
splicing, fatty acid metabolism, lipid transport, lipid
binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 51.2 bits (122), Expect = 2e-10
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 3 QKFNQAAEDVKNLKDT----PANDELLEIYGLYKQATVGDNT 40
++F A ++NL P+ +E+L Y YKQAT+G
Sbjct: 10 KQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCL 51
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 0.069
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 47 CQHRDEKSVV-----EVVCSKCRHTRGETVVQRR 75
C+ K V +VVC+ C + +V R
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
Score = 27.7 bits (61), Expect = 0.29
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 9/33 (27%)
Query: 48 QHRDEKSVVEVVCSKCR---------HTRGETV 71
R + + C +C+ + G+ V
Sbjct: 12 GRRGPNLNIVLTCPECKVYPPKIVERFSEGDVV 44
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 28.7 bits (65), Expect = 0.12
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 22 DELLEIYGLYKQATVGDNTTAVS 44
DEL++ +GL K GD+ VS
Sbjct: 45 DELVDQHGLEKIEVSGDSYMVVS 67
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide,
structural genomics, structural genomics conso SGC,
CGMP biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 28.4 bits (64), Expect = 0.13
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 22 DELLEIYGLYKQATVGD 38
D+ +YK T+GD
Sbjct: 49 DQQCGELDVYKVETIGD 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.25
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 22 DELLEIYGLYKQATVGD 38
+EL ++Y Y VGD
Sbjct: 171 EELRDLYQTY-HVLVGD 186
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 24.5 bits (54), Expect = 3.1
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 22 DELLEIYGLYKQATVGDNTTAVS 44
D+L + +GD VS
Sbjct: 69 DKLAAENHCLRIKILGDCYYCVS 91
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase,
dimethylarsenic, lyase, membrane, transmembrane; 2.55A
{Chlamydomonas reinhardtii} PDB: 3et6_B
Length = 190
Score = 24.2 bits (53), Expect = 5.3
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 22 DELLEIY-GLYKQATVGDNTTAVS 44
D +E Y LYK T+GD V
Sbjct: 44 DAAIEEYPQLYKVETIGDAYMVVC 67
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 24.0 bits (51), Expect = 6.7
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 17 DTPANDELLEIYGLY--KQATVGDNTTAVSRYCQHRDEKS 54
D+ ++ ++ ++ VG + RY +
Sbjct: 516 DSELMRDIYSMHTFLTERKLNVGKVYRLLLRYYREECRDC 555
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET:
FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB:
1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B*
1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B*
3g82_B* 3maa_B* 1cul_B*
Length = 220
Score = 23.7 bits (52), Expect = 6.8
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 22 DELLE---IYGLYKQATVGD 38
D+LL G+ K T+G
Sbjct: 53 DDLLSKPKFSGVEKIKTIGS 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.129 0.373
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,039,091
Number of extensions: 45434
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 21
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)