RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10469
         (75 letters)



>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 86

 Score = 60.6 bits (147), Expect = 7e-15
 Identities = 23/38 (60%), Positives = 31/38 (81%)

Query: 4  KFNQAAEDVKNLKDTPANDELLEIYGLYKQATVGDNTT 41
          +F++AAE+VK+LK  PA++E+L IY  YKQATVGD  T
Sbjct: 4  EFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINT 41


>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
          falciparum [TaxId: 5833]}
          Length = 89

 Score = 53.3 bits (128), Expect = 6e-12
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 1  MFQKFNQAAEDVKNLKDTP--ANDELLEIYGLYKQATVGDNTTA 42
          M Q F +    +  L  T    N+  L++Y  YKQ+T+G+    
Sbjct: 2  MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIK 45


>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 208

 Score = 22.5 bits (48), Expect = 7.5
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 12  VKNLKDTPANDELLEIYGLYKQATVGDNTTAV 43
           V +    P +   + ++GL   AT G      
Sbjct: 83  VTDDSLPPGSPITVLVFGLPVSATTGMTAIEF 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,740
Number of extensions: 8629
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)