BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1047
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P+F+ VY ATV E +GT V+ + A DAD P G ++K+ YS+ G YF++++
Sbjct: 102 NEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSIL--QGQPYFSVES 159
Query: 60 E 60
E
Sbjct: 160 E 160
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F +Y A V E +GT VI + A+DAD P G ++K+ YS+ +G YF+++
Sbjct: 103 NPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSIL--EGQPYFSVEA 160
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVV 86
+ + R +D K+EY++V+
Sbjct: 161 QTGI--IRTALPNMDR-EAKEEYHVVI 184
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGM--NSKISYSVRGGDGLGYFTIDN 59
NAP+F ++ +V E +GT V + A DAD P + ++ ++Y + G+ YFT+D+
Sbjct: 100 NAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTVDD 157
Query: 60 EGPL 63
G +
Sbjct: 158 SGVI 161
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 23/119 (19%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N+P F VY+A + EN GT ++ L+AAD D G+N +I Y F E
Sbjct: 10 NSPRFEKSVYEADLAENSAPGTPILQLRAADLD-VGVNGQIEY---------VFGAATES 59
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDR-EIAPLGYNLTLRAVDKGTPPRETYKAT 119
R+ T + VL +DR E+ L + T+ A D+G PP+ T KAT
Sbjct: 60 VRRLLRLDETS---------GWLSVLHRIDREEVNQLRF--TVMARDRGQPPK-TDKAT 106
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 27/113 (23%)
Query: 2 NAPVFSDFVYQA-TVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE 60
NAP F YQA V E+ P+GT ++ +KA D+D G N++I Y V +F +D+
Sbjct: 320 NAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSD-SGSNAEIEYLVSD----DHFAVDSN 374
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 113
G IV K LD + Y + A DKG PP+
Sbjct: 375 GI---------------------IVNNKQLDADNNNAYYEFIVTAKDKGEPPK 406
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRG-GDGLGYFTIDNEG 61
AP F Y+A + ENQ + +I++KA + +I Y+++ G G G F I G
Sbjct: 216 APQFYMPSYEAEIPENQKKDSDIISIKAKSF----ADREIRYTLKAQGQGAGTFNI---G 268
Query: 62 PLNHFRIVPTKIDPGTKKK--EYNIVVLKLLDREIAPLGYNLTLRAVD 107
P + + ++D ++ Y+++V D +LT+R D
Sbjct: 269 PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTD 316
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
NAP F + Y ATV E +GT V + A DAD P G ++K+ YS+ +G YF+I+
Sbjct: 102 NAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL--EGQPYFSIEP 159
Query: 60 E 60
E
Sbjct: 160 E 160
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N P F+ +Y +V E+ +GT + +KA D D G N++ SY + GDG F I ++
Sbjct: 211 NPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQD-IGENAQSSYDIIDGDGTALFEITSDA 269
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 24/67 (35%)
Query: 71 TKIDPGTKKKEY------------------NIVVLKLLDREIAPLGYNLTLRAVDKGT-- 110
T +DPG+KK +Y +I +K LDRE Y LT +AVD T
Sbjct: 26 TDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE-EKAEYTLTAQAVDFETNK 84
Query: 111 ---PPRE 114
PP E
Sbjct: 85 PLEPPSE 91
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 32/121 (26%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N PVF + + + EN P+GT VI L A DAD G N++I Y
Sbjct: 10 NRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD-IGSNAEIRY----------------- 51
Query: 62 PLNHFRIVPTKIDPGTKK------KEYNIVVLKLLDREIAPLGYNLTLRAVD-KGTPPRE 114
I ++ P TK+ I V + LDRE + + +T+ A D TP R
Sbjct: 52 ------IFGAQVAPATKRLFALNNTTGLITVQRSLDREETAI-HKVTVLASDGSSTPARA 104
Query: 115 T 115
T
Sbjct: 105 T 105
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGM-NSKISYSVRGGDGLGYFTIDNE 60
N P+F + Y V E P GT V+ + A DAD P N+ + Y++R T D
Sbjct: 104 NRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIR------QQTPDKP 157
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDRE-IAPLGYNLTLRAVD 107
P N F I P K D T +V LLDRE + Y L + A D
Sbjct: 158 SP-NMFYIDPEKGDIVT------VVSPALLDRETLENPKYELIIEAQD 198
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N P+F + Y V E P GT V+ + A DAD P + + L + I +
Sbjct: 103 NRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTD----------NALLRYNILKQT 152
Query: 62 PL----NHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPL-GYNLTLRAVDKG 109
P N F I P K D T +V LLDRE Y L + A D G
Sbjct: 153 PTKPSPNMFYIDPEKGDIVT------VVSPVLLDRETMETPKYELVIEAKDMG 199
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNS-KISYSVRGGDGLGYFTI 57
NAP+F Y A V EN+ IG V L D D PG + + Y +R +G G+F I
Sbjct: 372 NAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEG-GFFNI 426
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 24/111 (21%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADP--PGMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V+E GT V+ + A D D +N +SYS+ D
Sbjct: 259 NRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI--------LKQDP 310
Query: 60 EGPL-NHFRIVPTKIDPGTKKKEYNIVVL--KLLDREIAPLGYNLTLRAVD 107
E P+ N F I +E ++ L LDRE P Y LT++A D
Sbjct: 311 EEPIPNLFTI----------NRETGVISLIGTGLDREKFP-EYTLTVQATD 350
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE 60
AP F V + V E+ G +I+L A D D + K+SY + G D + T++ +
Sbjct: 484 APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQI-QKLSYFI-GNDPARWLTVNKD 539
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNS-KISYSVRGGDGLGYFTI 57
NAP+F Y A V EN+ IG V L D D PG + + Y +R +G G+F I
Sbjct: 223 NAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEG-GFFNI 277
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 24/111 (21%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADP--PGMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V+E GT V+ + A D D +N +SYS+ D
Sbjct: 110 NRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI--------LKQDP 161
Query: 60 EGPL-NHFRIVPTKIDPGTKKKEYNIVVL--KLLDREIAPLGYNLTLRAVD 107
E P+ N F I +E ++ L LDRE P Y LT++A D
Sbjct: 162 EEPIPNLFTI----------NRETGVISLIGTGLDREKFP-EYTLTVQATD 201
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP-GMNSKISYSVRGGD----GLGYFT 56
N P F V+ +V E GT V+T+ A DAD P +N + Y + FT
Sbjct: 104 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 57 IDNE 60
I+NE
Sbjct: 164 INNE 167
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP-GMNSKISYSVRGGD----GLGYFT 56
N P F V+ +V E GT V+T+ A DAD P +N + Y + FT
Sbjct: 104 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 57 IDNE 60
I+NE
Sbjct: 164 INNE 167
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP-GMNSKISYSVRGGD----GLGYFT 56
N P F V+ +V E GT V+T+ A DAD P +N + Y + FT
Sbjct: 104 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFT 163
Query: 57 IDNE 60
I+NE
Sbjct: 164 INNE 167
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP F + Y + EN P+GT + + A D D G + YS + +F ID+
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD-LGAGGSVLYSFQPPS--PFFAIDSAR 162
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK 108
+ + V++ LD E+ Y LT+ A D+
Sbjct: 163 GI--------------------VTVIQELDYEVTQ-AYQLTVNATDQ 188
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP F + Y + EN P+GT + + A D D G + YS + +F ID+
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD-LGAGGSVLYSFQPPS--PFFAIDSAR 162
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK 108
+ + V++ LD E+ Y LT+ A D+
Sbjct: 163 GI--------------------VTVIQELDYEVTQ-AYQLTVNATDQ 188
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP F + Y + EN P+GT + + A D D G + YS + +F ID+
Sbjct: 105 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD-LGAGGSVLYSFQPPS--PFFAIDSAR 161
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK 108
+ + V++ LD E+ Y LT+ A D+
Sbjct: 162 GI--------------------VTVIQELDYEVTQ-AYQLTVNATDQ 187
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP F + Y + EN P+GT + + A D D G + YS + +F ID+
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD-LGAGGSVLYSFQPPS--PFFAIDSAR 162
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK 108
+ + V++ LD E+ Y LT+ A D+
Sbjct: 163 GI--------------------VTVIQELDYEVTQ-AYQLTVNATDQ 188
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPG 37
NAPVF+ YQ V EN+ + + TLK D D P
Sbjct: 217 NAPVFNPSTYQGQVPENE-VNARIATLKVTDDDAPN 251
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 103 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 152
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 153 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 194
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 106 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 155
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 156 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 197
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 153
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 154 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 195
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 106 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 155
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 156 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 197
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ +
Sbjct: 105 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI----------VSQ 154
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
+ L H + D G V+ LDRE P Y L ++A D
Sbjct: 155 DPELPHKNMFTVNRDTGVIS-----VLTSGLDRESYPT-YTLVVQAAD 196
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGD 50
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ D
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQD 154
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 28/113 (24%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGD----GLGYF 55
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ D F
Sbjct: 104 NKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMF 163
Query: 56 TID-NEGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVD 107
TI+ N G ++ VV LDRE P Y L ++A D
Sbjct: 164 TINRNTGVIS--------------------VVTTGLDRESFPT-YTLVVQAAD 195
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRG-GDGLGYFTIDNEG 61
AP F Y+A + ENQ + +I++KA + +I Y+++ G G G F I G
Sbjct: 211 APQFYMPSYEAEIPENQKKDSDIISIKAKSF----ADREIRYTLKAQGQGAGTFNI---G 263
Query: 62 PLNHFRIVPTKIDPGTKKK--EYNIVVLKLLDREIAPLGYNLTLRAVD 107
P + + ++D ++ Y+++V D +LT+R D
Sbjct: 264 PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTD 311
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVIT-----LKAADADPPGMNSKISYSVR 47
N+P F Y ATV E P+GT + T A D D G N +I Y ++
Sbjct: 123 NSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDID-DGPNGQIEYVIQ 172
>pdb|2AHU|A Chain A, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|B Chain B, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|C Chain C, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|D Chain D, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7
Length = 531
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 2 NAPVFSDFVYQ-ATVKENQPIGTLVITLKAADADPPGMNSKI 42
+P SD Q + N P G L TL+AA A PG+ S I
Sbjct: 98 QSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDI 139
>pdb|2AHV|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHW|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
Length = 531
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 2 NAPVFSDFVYQ-ATVKENQPIGTLVITLKAADADPPGMNSKI 42
+P SD Q + N P G L TL+AA A PG+ S I
Sbjct: 98 QSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDI 139
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADAD 34
N P F+ V++ +V E GT V+ + A DAD
Sbjct: 106 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type
Iii Domain Of Human Neogenin
Length = 126
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 4 PVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPL 63
P+ + V T ENQ I + P K+ Y R Y+TI+N P
Sbjct: 38 PLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQR------YYTIENLDPS 91
Query: 64 NHFRI 68
+H+ I
Sbjct: 92 SHYVI 96
>pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant)
Bound To A Dsdna, In Edition Mode
Length = 793
Score = 25.4 bits (54), Expect = 9.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 46 VRGGDGLGYFTIDNEGPLNHFRIVPTKIDPGTKK--KEYNI--VVLKLLDREIAPLGY 99
V+ G +GY + +GP++ I + DP K EY I VL ++R + GY
Sbjct: 715 VKPGMVIGYIVLRGDGPISKRAIAIEEFDPKKHKYDAEYYIENQVLPAVERILRAFGY 772
>pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLU|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLV|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLW|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLX|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLY|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLZ|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM0|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM1|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
Length = 793
Score = 25.4 bits (54), Expect = 9.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 46 VRGGDGLGYFTIDNEGPLNHFRIVPTKIDPGTKK--KEYNI--VVLKLLDREIAPLGY 99
V+ G +GY + +GP++ I + DP K EY I VL ++R + GY
Sbjct: 715 VKPGMVIGYIVLRGDGPISKRAIAIEEFDPKKHKYDAEYYIENQVLPAVERILRAFGY 772
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,269,388
Number of Sequences: 62578
Number of extensions: 179408
Number of successful extensions: 319
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 62
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)