RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1047
(127 letters)
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 87.8 bits (218), Expect = 8e-23
Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 27/124 (21%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP-GMNSKISYSVRGG----DGLGYFT 56
N P F V+ +V E GT V+T+ A DAD P +N + Y + FT
Sbjct: 104 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 57 IDNE-GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
I+NE G + I V LDRE Y L ++A D P
Sbjct: 164 INNETGDI--------------------ITVAAGLDREKVQQ-YTLIIQATDMEGNPTYG 202
Query: 116 YKAT 119
T
Sbjct: 203 LSNT 206
Score = 69.3 bits (170), Expect = 9e-16
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 8 DFV-YQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHF 66
D+V + EN G L +D N + YSV G ++ P F
Sbjct: 1 DWVIPPINLPENSR-GPFPQELVRIRSDR-DKNLSLRYSVTGPGA-------DQPPTGIF 51
Query: 67 RIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
I +P + + V K LDRE+ ++L AVD E
Sbjct: 52 II-----NPIS----GQLSVTKPLDRELIAR-FHLRAHAVDINGNQVENP 91
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 86.6 bits (215), Expect = 2e-22
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 26/115 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
NAP+F ++ +V E +GT V + A DAD P ++ ++Y + G+ YFT+D+
Sbjct: 100 NAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN--EYFTVDD 157
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK-GTPPR 113
G LDRE Y + ++A D G
Sbjct: 158 SG--------------VI------FTARADLDRESQSA-YEIIVKAKDALGLTGE 191
Score = 61.6 bits (150), Expect = 5e-13
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 31/109 (28%)
Query: 8 DFVY-QATVKENQ--PIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-GPL 63
D+++ + ++E P+ V L ++ N Y + G F + G
Sbjct: 1 DWIWNRMHIREEIDSPLPHHVGKLTSSVG-----NKNAMYIIEGESANTIFKVQGYDG-- 53
Query: 64 NHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPP 112
+I + LDRE Y LT +D+
Sbjct: 54 -------------------DIYAFERLDREKKAE-YELTAHIIDRRNNR 82
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 83.7 bits (208), Expect = 2e-22
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N+P F VY+A + EN GT ++ L+AAD D G+N +I Y F E
Sbjct: 10 NSPRFEKSVYEADLAENSAPGTPILQLRAADLD-VGVNGQIEYV---------FGAATES 59
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
R +D + + VL +DRE T+ A D+G PP+
Sbjct: 60 VRRLLR-----LDETSGW----LSVLHRIDREEVNQ-LRFTVMARDRGQPPKTDK 104
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 85.7 bits (213), Expect = 4e-22
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 27/116 (23%)
Query: 2 NAPVFSDFVYQATVK--ENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDN 59
P F++ + + E+ P+G+ V L A D D N + + V G + +F ++
Sbjct: 4 RLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD----NDPLVFGVSGEEASRFFAVE- 58
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
+ + + LDRE + + D
Sbjct: 59 -------------------PDTGVVWLRQPLDRETKSE-FTVEFSVSDHQGVITRK 94
Score = 80.7 bits (200), Expect = 3e-20
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 24/112 (21%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP F + Y + EN P+GT + + A D D G + YS + +F ID+
Sbjct: 105 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPD-LGAGGSVLYSFQ--PPSPFFAIDSA- 160
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 113
+ V++ LD E+ Y LT+ A D+
Sbjct: 161 -------------------RGIVTVIQELDYEVTQA-YQLTVNATDQDKTRP 192
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 84.7 bits (210), Expect = 1e-21
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 28/119 (23%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGD----GLGYF 55
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ D F
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMF 163
Query: 56 TIDNE-GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 113
T++ + G + V+ LDRE P Y L ++A D
Sbjct: 164 TVNRDTGVI--------------------SVLTSGLDRESYPT-YTLVVQAADLQGEGL 201
Score = 74.3 bits (183), Expect = 1e-17
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 10 VYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIV 69
+ + EN+ G L ++ +K+ YS+ G ++ P+ F I
Sbjct: 4 IAAISCPENEK-GEFPKNLVQIKSNR-DKETKVFYSITGQGA-------DKPPVGVFII- 53
Query: 70 PTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
+ T + V + LDRE Y L AV E
Sbjct: 54 ----ERET----GWLKVTQPLDREAIAK-YILYSHAVSSNGEAVED 90
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 84.3 bits (209), Expect = 1e-21
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P+F+ VY ATV E +GT V+ + A DAD P G ++K+ YS+ G YF++++
Sbjct: 102 NEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ--PYFSVES 159
Query: 60 E-GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPP 112
E G + L +DRE Y + ++A D G
Sbjct: 160 ETGII--------------------KTALLNMDRENREQ-YQVVIQAKDMGGQM 192
Score = 66.5 bits (163), Expect = 8e-15
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 24/107 (22%)
Query: 11 YQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIVP 70
++E + +D D + + Y + G F I+
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRG--DGSLKYILSGDGAGDLFIIN------------ 51
Query: 71 TKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGT-PPRETY 116
+ +I K LDRE P+ Y L +AV++ T P E
Sbjct: 52 --------ENTGDIQATKRLDREEKPV-YILRAQAVNRRTGRPVEPE 89
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 86.6 bits (215), Expect = 3e-21
Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 27/124 (21%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADAD-PPGMNSKISYSVRGGD----GLGYFT 56
N P F V+ +V E GT V+T+ A DAD P +N + Y + FT
Sbjct: 104 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 57 IDNE-GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
I+NE G + I V LDRE Y L ++A D P
Sbjct: 164 INNETGDI--------------------ITVAAGLDREKVQQ-YTLIIQATDMEGNPTYG 202
Query: 116 YKAT 119
T
Sbjct: 203 LSNT 206
Score = 78.5 bits (194), Expect = 2e-18
Identities = 30/115 (26%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-G 61
P F+ +E GT++ TL A D D M I Y+ D + ID G
Sbjct: 335 NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPD-RYMQQNIRYTK-LSDPANWLKIDPVNG 392
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG---YNLTLRAVDKGTPPR 113
I + +LDRE + YN T A D G PP
Sbjct: 393 ---------------------QITTIAVLDRESPNVKNNIYNATFLASDNGIPPM 426
Score = 73.1 bits (180), Expect = 2e-16
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGM-NSKISYSVRGGDGLGYFTIDNE 60
N P F+ + V EN+ +V L D D P +Y + GGD G F
Sbjct: 219 NPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRF----- 272
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 113
I + + V+K +D E + LT+ A ++ +
Sbjct: 273 -----------AILTDPNSNDGLVTVVKPIDFETNR-MFVLTVAAENQVPLAK 313
Score = 62.0 bits (151), Expect = 2e-12
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 19/105 (18%)
Query: 10 VYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIV 69
+ + EN G L +D N + YSV G ++ P F I
Sbjct: 4 IPPINLPENSR-GPFPQELVRIRSDR-DKNLSLRYSVTGPGA-------DQPPTGIFII- 53
Query: 70 PTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRE 114
+P + + V K LDRE+ ++L AVD E
Sbjct: 54 ----NPISG----QLSVTKPLDRELIAR-FHLRAHAVDINGNQVE 89
Score = 44.6 bits (106), Expect = 2e-06
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 26/116 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTID-NE 60
NAP +A E ++ IT D DP + +TI+
Sbjct: 442 NAPQVLP--QEAETCETPEPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLN 499
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKL-LDREIAPLGYNLTLRAVDKGTPPRET 115
G + L L + A + Y + + D G PP+
Sbjct: 500 G---------------------DFAQLNLKIKFLEAGI-YEVPIIITDSGNPPKSN 533
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 86.1 bits (213), Expect = 6e-21
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V+E GT V+ + A D D +N +SYS+ D
Sbjct: 259 NRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDP-------E 311
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNI-VVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
E N F I+ T I ++ LDRE P Y LT++A D
Sbjct: 312 EPIPNLFT-----INRETGV----ISLIGTGLDREKFPE-YTLTVQATDLEGAGLSV 358
Score = 80.3 bits (198), Expect = 7e-19
Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTID-NEG 61
AP F V + V E+ G +I+L A D D K+SY G D + T++ + G
Sbjct: 484 APFFVPAVSRVDVSEDLSRGEKIISLVAQDPD-KQQIQKLSYF-IGNDPARWLTVNKDNG 541
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPL---GYNLTLRAVDKGTPPR 113
+ LDRE + Y + + D G
Sbjct: 542 ---------------------IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 575
Score = 72.2 bits (177), Expect = 3e-16
Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 21/119 (17%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP+F Y A V EN IG V L D D PG + + + G+F
Sbjct: 372 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFF------ 424
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK---GTPPRETYK 117
I + + + K LD E+ Y L + + P +
Sbjct: 425 ----------NITTDPESNQGILTTAKGLDFELRKQ-YVLQITVENAEPFSVPLPTSTA 472
Score = 56.0 bits (135), Expect = 2e-10
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 2 NAPVFSDFVYQATVKE-NQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE 60
P FS Y +V G + + +D Y V G F + +
Sbjct: 33 CKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT---RKHGLYDV----GDSRFRVLPD 85
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 113
G + +V + K + D N+ + + +
Sbjct: 86 GTV----LVKRHVKLHKDTK----FTISTWDARGIKHSTNIAVASKRHRSGEE 130
Score = 54.9 bits (132), Expect = 4e-10
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 10 VYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIV 69
+ V EN+ G L ++ +K+ YS+ G + P FRI
Sbjct: 159 IPPIKVSENER-GPFPKRLVQIKSNK-DRFNKVYYSITGQGA-------DNPPQGVFRI- 208
Query: 70 PTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRE 114
+ T ++V + LDRE Y L+ AV + P E
Sbjct: 209 ----EWETG----WMLVTRPLDREEYDK-YVLSSHAVSENGSPVE 244
Score = 45.6 bits (108), Expect = 8e-07
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N PV S V+ + +P L +DAD P S+ G L + +
Sbjct: 591 NGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSK 645
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
GT ++L + Y++ + D P+ T
Sbjct: 646 --------------GT------SMLLSPTQQLKKGD-YSIYVLLSDAQNNPQLT 678
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 79.8 bits (198), Expect = 9e-21
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N PVF + + + EN P+GT VI L A DAD G N++I Y +
Sbjct: 10 NRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD-IGSNAEIRYI--------FGAQVAPA 60
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPP 112
F ++ T I V + LDRE + + +T+ A D + P
Sbjct: 61 TKRLFA-----LNNTTGL----ITVQRSLDREETAI-HKVTVLASDGSSTP 101
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 85.4 bits (212), Expect = 1e-20
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V+E GT V+ + A D D +N +SYS+ D
Sbjct: 110 NRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDP-------E 162
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNI-VVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
E N F I+ T I ++ LDRE P Y LT++A D
Sbjct: 163 EPIPNLFT-----INRETGV----ISLIGTGLDREKFPE-YTLTVQATDLEGAGLSV 209
Score = 81.2 bits (201), Expect = 3e-19
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 27/115 (23%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-G 61
AP F V + V E+ G +I+L A D D K+SY + G D + T++ + G
Sbjct: 335 APFFVPAVSRVDVSEDLSRGEKIISLVAQDPD-KQQIQKLSYFI-GNDPARWLTVNKDNG 392
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPL---GYNLTLRAVDKGTPPR 113
+ LDRE + Y + + D G
Sbjct: 393 ---------------------IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 426
Score = 72.7 bits (179), Expect = 2e-16
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 21/119 (17%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP+F Y A V EN+ G V L D D PG + + + G+F
Sbjct: 223 NAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFF------ 275
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK---GTPPRETYK 117
I + + + K LD E+ Y L + + P +
Sbjct: 276 ----------NITTDPESNQGILTTAKGLDFELRKQ-YVLQITVENAEPFSVPLPTSTA 323
Score = 61.2 bits (149), Expect = 3e-12
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 31/117 (26%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGG----DGLGYFTID 58
+ + + E P ++ + ++ +K+ YS+ G G F I+
Sbjct: 5 HHDWVIPPIKVSENERGPFPKRLVQI---KSNK-DRFNKVYYSITGQGADNPPQGVFRIE 60
Query: 59 NE-GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRE 114
E G ++V + LDRE Y L+ AV + P E
Sbjct: 61 WETG---------------------WMLVTRPLDREEYDK-YVLSSHAVSENGSPVE 95
Score = 43.5 bits (103), Expect = 4e-06
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N PV S V+ + +P L +DAD P S+ G L + +
Sbjct: 442 NGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSK 496
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
GT ++L + Y++ + D P+ T
Sbjct: 497 --------------GT------SMLLSPTQQLKKGD-YSIYVLLSDAQNNPQLT 529
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 82.7 bits (205), Expect = 3e-20
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N P F+ +Y +V E+ +GT + +KA D D G N++ SY + GDG F I
Sbjct: 211 NPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQD-IGENAQSSYDIIDGDGTALFEIT--- 266
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 113
D ++ I + K LD E Y L + A + PR
Sbjct: 267 -----------SDAQA--QDGVIRLRKPLDFETKKS-YTLKVEAANIHIDPR 304
Score = 77.3 bits (191), Expect = 3e-18
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
NAP F + Y ATV E +GT V + A DAD P G ++K+ YS+ +G YF+
Sbjct: 102 NAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL--EGQPYFS--- 156
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNI-VVLKLLDREIAPLGYNLTLRAVDKGTPP 112
I+P T I L +DRE Y + ++A D G
Sbjct: 157 -------------IEPETA----IIKTALPNMDREAKEE-YLVVIQAKDMGGHS 192
Score = 64.6 bits (158), Expect = 1e-13
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 28/111 (25%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-G 61
+ V++ ++E +++ D DP + KI Y + G F I++ G
Sbjct: 1 SWVWN---QMFVLEEFSGPEPILVGRLHTDLDPG--SKKIKYILSGDGAGTIFQINDITG 55
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPP 112
+I +K LDRE Y LT +AVD T
Sbjct: 56 ---------------------DIHAIKRLDREEKAE-YTLTAQAVDFETNK 84
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 80.9 bits (200), Expect = 3e-20
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADAD-PPGMNSKISYSVRGGDGLGYFTIDNE 60
N P+F + Y V E P GT V+ + A DAD P N+ + Y++R ++
Sbjct: 104 NRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTP-------DK 156
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLK---LLDREIAPLG-YNLTLRAVDKGTPP 112
N F IDP IV + LLDRE Y L + A D
Sbjct: 157 PSPNMFY-----IDPEKGD----IVTVVSPALLDRETLENPKYELIIEAQDMAGLD 203
Score = 68.2 bits (167), Expect = 2e-15
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 24/110 (21%)
Query: 9 FVYQATVKENQ--PIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHF 66
V + ENQ P V + +D G +++ D G F I+
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRIN-------- 54
Query: 67 RIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
+ ++ V + LDRE Y L + D E
Sbjct: 55 ------------ENTGSVSVTRTLDRETIAT-YQLYVETTDASGKTLEGP 91
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 82.4 bits (204), Expect = 4e-20
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 26/115 (22%)
Query: 2 NAPVFSD--FVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDN 59
P F + QA V+ N P T V TL+A D D N I Y + G F +D
Sbjct: 102 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD-TDHN--IHYFIVRDRTGGRFEVD- 157
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRE 114
++ + ++ Y L ++A D+ +
Sbjct: 158 -------------------ERSGVVRTRGTDLFQLDME-YVLYVKAEDQNGKVDD 192
Score = 80.9 bits (200), Expect = 1e-19
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 27/113 (23%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYS-VRGGDGLGYFTIDNE 60
AP F Y+A + ENQ + +I++KA + +I Y+ G G G F I
Sbjct: 210 RAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA----DREIRYTLKAQGQGAGTFNIGP- 264
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAP--LGYNLTLRAVDKGTP 111
G + + K LD E Y+L + A +
Sbjct: 265 -------------TSGI------VKLAKELDFEDLRQPHVYSLIVTATEDSGG 298
Score = 48.1 bits (115), Expect = 9e-08
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 18/94 (19%)
Query: 25 VITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIVPTKIDPGTKKKEYNI 84
++ +AD K + + F I ++ N + V T G +
Sbjct: 6 TKRIEFTEADG-DTEGKSVFQLEKETDKETFKIRDD---NPWVTVETN---G------AV 52
Query: 85 VVLKLLDREIAPLG-----YNLTLRAVDKGTPPR 113
V K D E + +
Sbjct: 53 RVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKY 86
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 83.5 bits (207), Expect = 4e-20
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A DAD N+ I+Y++ D
Sbjct: 104 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQD-------PE 156
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLK-LLDREIAPLGYNLTLRAVDKGTPPRET 115
N F ++ T I VL LDRE P Y L ++A D T
Sbjct: 157 LPHKNMFT-----VNRDTGV----ISVLTSGLDRESYPT-YTLVVQAADLQGEGLST 203
Score = 81.2 bits (201), Expect = 3e-19
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 28/116 (24%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-G 61
AP+F + V E+ +G + + A + D M+ KI+Y + D + I+ E G
Sbjct: 329 APIFMPAERRVEVPEDFGVGQEITSYTAREPD-TFMDQKITYRI-WRDTANWLEINPETG 386
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG----YNLTLRAVDKGTPPR 113
I +DRE A Y + A D G+P
Sbjct: 387 ---------------------AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIA 421
Score = 69.3 bits (170), Expect = 3e-15
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 20/119 (16%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPG-MNSKISYSVRGGDGLGYFTIDNE 60
NAPVF+ YQ V EN+ + TLK D D P K Y+V
Sbjct: 217 NAPVFNPSTYQGQVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVN------------ 263
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKAT 119
P F +V DP T + + K LD E Y L +R ++ +T
Sbjct: 264 DPDQQFVVVT---DPTT--NDGILKTAKGLDFEAKQQ-YILHVRVENEEPFEGSLVPST 316
Score = 64.3 bits (157), Expect = 2e-13
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 20/108 (18%)
Query: 8 DFV-YQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHF 66
D+V + EN+ G L ++ +K+ YS+ G ++ P+ F
Sbjct: 1 DWVIPPISCPENEK-GEFPKNLVQIKSNR-DKETKVFYSITGQGA-------DKPPVGVF 51
Query: 67 RIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRE 114
I + T + V + LDRE Y L AV E
Sbjct: 52 II-----ERETG----WLKVTQPLDREAIAK-YILYSHAVSSNGEAVE 89
Score = 41.5 bits (98), Expect = 2e-05
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 27/115 (23%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGG-DGLGYFTIDNE 60
NAP+ + P ++ D D P S + + G ++
Sbjct: 437 NAPIPEP--RNMQFCQRNPQPHII---TILDPDLPPNTSPFTAELTHGASVNWTIEYNDA 491
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
++L+ Y + L+ D + T
Sbjct: 492 A--------------------QESLILQPRKDLEIGE-YKIHLKLADNQNKDQVT 525
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 80.0 bits (198), Expect = 8e-20
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPP--GMNSKISYSVRGGDGLGYFTIDN 59
N P F +Y A V E +GT VI + A+DAD P G ++K+ YS+ G YF+++
Sbjct: 103 NPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEA 160
Query: 60 E-GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPP 112
+ G + L +DRE Y++ ++A D G
Sbjct: 161 QTGII--------------------RTALPNMDREAKEE-YHVVIQAKDMGGHM 193
Score = 69.2 bits (170), Expect = 1e-15
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 24/106 (22%)
Query: 11 YQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIVP 70
++E +++ +D D + I Y + G F ID
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSG--DGNIKYILSGEGAGTIFVID------------ 52
Query: 71 TKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTP-PRET 115
K NI K LDRE Y L +AVD+ T P E
Sbjct: 53 --------DKSGNIHATKTLDREERAQ-YTLMAQAVDRDTNRPLEP 89
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 80.4 bits (199), Expect = 5e-19
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 27/113 (23%)
Query: 2 NAPVFSDFVYQA-TVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE 60
NAP F YQA V E+ P+GT ++ +KA D+D G N++I Y V +F +D+
Sbjct: 320 NAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDS-GSNAEIEYLVSDD----HFAVDSN 374
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPR 113
G IV K LD + Y + A DKG PP+
Sbjct: 375 G---------------------IIVNNKQLDADNNNAYYEFIVTAKDKGEPPK 406
Score = 79.7 bits (197), Expect = 7e-19
Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 28/116 (24%)
Query: 2 NAPVF--SDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTID- 58
P F QA V+ N P T V TL+A D D N I Y + G F +D
Sbjct: 107 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD-TDHN--IHYFIVRDRTGGRFEVDE 163
Query: 59 NEGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRE 114
G + ++ Y L ++A D+ +
Sbjct: 164 RSG---------------------VVRTRGTDLFQLDME-YVLYVKAEDQNGKVDD 197
Score = 79.3 bits (196), Expect = 1e-18
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
AP F Y+A + ENQ + +I++KA + +I Y+++ G
Sbjct: 215 RAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA----DREIRYTLKA-------QGQGAG 263
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAP--LGYNLTLRAVDKGTPPRETYK 117
F I PT + + K LD E Y+L + A + + T
Sbjct: 264 T---FNIGPTS---------GIVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSV 308
Score = 59.2 bits (144), Expect = 1e-11
Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 21/104 (20%)
Query: 15 VKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIVPTKID 74
V ++ +AD K + + F I ++ P
Sbjct: 4 VTRAVRPTK---RIEFTEADG-DTEGKSVFQLEKETDKETFKIRDDNPW----------- 48
Query: 75 PGTKKKEYNIVVLKLLDREIAPLG-----YNLTLRAVDKGTPPR 113
T + + V K D E + +
Sbjct: 49 -VTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKY 91
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 75.7 bits (186), Expect = 6e-18
Identities = 20/113 (17%), Positives = 30/113 (26%), Gaps = 24/113 (21%)
Query: 4 PVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPL 63
F + ++EN+P GT ++Y + G+GL
Sbjct: 137 LCFPETRPSFRIRENRPPGTFHQFRLLPVQF-LCPQISVAYRLLEGEGL----------- 184
Query: 64 NHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDK-GTPPRET 115
FR P + + LDRE Y L G
Sbjct: 185 -PFR-----SAPDS----LEVSTRWALDREQREK-YELVAVCTVHAGAREEVV 226
Score = 61.9 bits (150), Expect = 8e-13
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 21/112 (18%)
Query: 6 FSDFVYQATVKENQPIGTLVITLKAADADP-PGMNSKISYSVRGGDGLGYFTIDNEGPLN 64
FS Y + +Q GT ++ + A P + ++ + G N
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTR------LHENN 56
Query: 65 HFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
R I T + + + LD L ++G P Y
Sbjct: 57 WIR-----IQEDTG----LLYLQRSLDHSSWE-----KLSVRNRGFPLLTVY 94
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 70.1 bits (172), Expect = 5e-17
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 19/113 (16%)
Query: 3 APVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGP 62
P+ S + + EN+ G L ++ K+ YS+ G + P
Sbjct: 1 GPLGSWVIPPISCPENEK-GPFPKNLVQIKSNK-DKEGKVFYSITGQG-------ADTPP 51
Query: 63 LNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
+ F I + T + V + LDRE Y L AV E
Sbjct: 52 VGVFII-----ERETG----WLKVTEPLDRERIAT-YTLFSHAVSSNGNAVED 94
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 64.8 bits (158), Expect = 4e-15
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 26/112 (23%)
Query: 7 SDFVYQATVKENQ--PIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-GPL 63
S + ENQ P V + ++ G ++S D G F I+ G
Sbjct: 1 SILATPILIPENQRPPFPRSVGKVIRSEGTE-GAKFRLSGKGVDQDPKGIFRINEISG-- 57
Query: 64 NHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
++ V + LDRE Y L + D +
Sbjct: 58 -------------------DVSVTRPLDREAIAN-YELEVEVTDLSGKIIDG 89
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 64.7 bits (158), Expect = 4e-15
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 26/106 (24%)
Query: 14 TVKENQ--PIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-GPLNHFRIVP 70
++ ENQ P +V + +D P G K+ + G F I+ G
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIP-GSKIKLYGKGVDQEPKGIFKINENSG--------- 57
Query: 71 TKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
+ V K LDRE P Y L + D+ E
Sbjct: 58 ------------EVSVTKALDREAIPS-YQLQVETTDENGKTIEGP 90
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 65.0 bits (159), Expect = 5e-15
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 7 SDFVY-QATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNH 65
SD+V + EN G L + N + YSV G ++ P
Sbjct: 2 SDWVIPPINLPENSR-GPFPQELVRIRSGR-DKNLSLRYSVTGPGA-------DQPPTGI 52
Query: 66 FRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
F I +P + + V K LDRE+ ++L AVD E
Sbjct: 53 FII-----NPISG----QLSVTKPLDRELIAR-FHLRAHAVDINGNQVENP 93
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 64.7 bits (158), Expect = 5e-15
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 26/105 (24%)
Query: 14 TVKENQ--PIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-GPLNHFRIVP 70
+ ENQ P V + +D G +++ D G F I+ G
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPE-GSKFRLTGKGVDQDPKGTFRINENTG--------- 58
Query: 71 TKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
++ V + LDRE Y L + D E
Sbjct: 59 ------------SVSVTRTLDRETIAT-YQLYVETTDASGKTLEG 90
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 60.1 bits (146), Expect = 3e-13
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 26/103 (25%)
Query: 12 QATVKENQ-PIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-GPLNHFRIV 69
Q V E L + +D D + I Y + G FTID+ G
Sbjct: 7 QFFVLEEYTGTDPLYVGKLHSDMDRG--DGSIKYILSGEGAGIVFTIDDTTG-------- 56
Query: 70 PTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPP 112
+I ++ LDRE Y L +A+D+ T
Sbjct: 57 -------------DIHAIQRLDREERSQ-YTLRAQALDRRTGR 85
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 59.7 bits (145), Expect = 7e-13
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 21/107 (19%)
Query: 12 QATVKENQ--PIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIV 69
++E + + + + D KI+Y G E P F
Sbjct: 16 PVALREGEDLSKKNPIAKIHS-DLAE-ERGLKITYKYTGKGI-------TEPPFGIFVF- 65
Query: 70 PTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
+ T + V +LDRE P + LT A+D E
Sbjct: 66 ----NKDTG----ELNVTSILDREETPF-FLLTGYALDARGNNVEKP 103
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 57.1 bits (138), Expect = 5e-12
Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 24/109 (22%)
Query: 12 QATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNE-GPLNHFRIVP 70
Q V E G I + D + KI Y + G F I++ G
Sbjct: 6 QMFVLEEFS-GPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITG--------- 55
Query: 71 TKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETYKAT 119
+I +K LDRE Y LT +AVD T +
Sbjct: 56 ------------DIHAIKRLDREEKAE-YTLTAQAVDFETNKPLEPPSE 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.054
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 17 ENQPIGTLVITLK--AADADPP-GMNSKI 42
E Q + L +LK A D+ P + + +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
Score = 26.8 bits (58), Expect = 1.5
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 78 KKKEYNIVVLKLLDREIAP-LGYNLTL 103
KK + + LKL + AP L T+
Sbjct: 23 KKLQAS---LKLYADDSAPALAIKATM 46
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 26.6 bits (59), Expect = 2.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 45 SVRGGDGLGYFTIDNEGPLNHFRIVPT 71
S RG + L F + +G L + + T
Sbjct: 257 SNRGYNTLAVFAVTADGHLTLIQQIST 283
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 24 LVITLKAADADPPGMN-SKISYSVR 47
L +TL+ A A P G++ S+I +S R
Sbjct: 389 LNLTLRKAKA-PSGLDQSRIPFSER 412
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.410
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,970,311
Number of extensions: 111566
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 63
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)