RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1047
(127 letters)
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 57.3 bits (137), Expect = 2e-12
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
NAP+F Y A V EN+ G V L D D PG + + + G+F I +
Sbjct: 4 NAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDP 62
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVV 86
N + K +K+Y + +
Sbjct: 63 ESNQGILTTAKGLDFELRKQYVLQI 87
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 53.1 bits (126), Expect = 7e-11
Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 25/118 (21%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
AP F V + V E+ G +I+L A D K+SY +
Sbjct: 2 EAPFFVPAVSRVDVSEDLSRGEKIISLVAQDP-DKQQIQKLSYFIGNDPA---------- 50
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLG---YNLTLRAVDKGTPPRETY 116
+ + LDRE + Y + + D G
Sbjct: 51 --RWLTVNK---------DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGT 97
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 52.4 bits (124), Expect = 1e-10
Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 25/123 (20%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPG-----MNSKISYSVRGGDGLGYFT 56
N P F V+ +V E GT V+T+ A DAD P + +I FT
Sbjct: 3 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFT 62
Query: 57 IDNEGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
I+NE + + Y L ++A D P
Sbjct: 63 INNETGDIITVAAGLDREKVQQ--------------------YTLIIQATDMEGNPTYGL 102
Query: 117 KAT 119
T
Sbjct: 103 SNT 105
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 51.6 bits (122), Expect = 3e-10
Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 14/114 (12%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
N P F+ V++ +V+E GT V+ + A D D + S I N
Sbjct: 4 NRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLF 63
Query: 62 PLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
+N V + I G DRE P Y LT++A D
Sbjct: 64 TINRETGVISLIGTGL-------------DREKFPE-YTLTVQATDLEGAGLSV 103
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 49.3 bits (116), Expect = 3e-09
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 18/117 (15%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKA--ADADPPGMNSKISYSVRGGDGLGYFTIDN 59
N P F+ V++ +V E GT V+ + A AD D N+ I+Y++ D
Sbjct: 3 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHK--- 59
Query: 60 EGPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
N F + V+ LDRE P Y L ++A D T
Sbjct: 60 ----NMFTVNRDTG--------VISVLTSGLDRESYPT-YTLVVQAADLQGEGLSTT 103
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 44.6 bits (104), Expect = 2e-07
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEG 61
F + VY A + ++ G ++ +K ++ + S T+
Sbjct: 9 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTVYAVR 68
Query: 62 PL----NHFRIVPTKIDPGTKKKEYNIVVLKLLD 91
+ + D T++K V L
Sbjct: 69 SFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREP 102
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 43.2 bits (101), Expect = 3e-07
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 19/106 (17%)
Query: 10 VYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRGGDGLGYFTIDNEGPLNHFRIV 69
+ V EN+ G L ++ +K+ YS+ G + P FRI
Sbjct: 4 IPPIKVSENER-GPFPKRLVQIKSNK-DRFNKVYYSITGQG-------ADNPPQGVFRI- 53
Query: 70 PTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRET 115
+ T + + + Y L+ AV + P E
Sbjct: 54 ----EWETGWMLVTRPLDREEYDK-----YVLSSHAVSENGSPVEE 90
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 42.4 bits (99), Expect = 8e-07
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 4 PVFSDFVYQATVKENQPIGTLVITLKAADADPPGMNSKISYSVRG----GDGLGYFTIDN 59
P+ S + + EN+ G L ++ K+ YS+ G +G F I+
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNK-DKEGKVFYSITGQGADTPPVGVFIIER 58
Query: 60 E 60
E
Sbjct: 59 E 59
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 39.8 bits (92), Expect = 7e-06
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 30/116 (25%)
Query: 7 SDFVY-QATVKENQPIGTLVITLKAADADPPGMNSKISYSVRG----GDGLGYFTIDNE- 60
SD+V + EN G L + N + YSV G G F I+
Sbjct: 2 SDWVIPPINLPENSR-GPFPQELVRIRSGR-DKNLSLRYSVTGPGADQPPTGIFIINPIS 59
Query: 61 GPLNHFRIVPTKIDPGTKKKEYNIVVLKLLDREIAPLGYNLTLRAVDKGTPPRETY 116
G L+ + + ++ ++L AVD E
Sbjct: 60 GQLSVTKPLDRELIAR----------------------FHLRAHAVDINGNQVENP 93
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 29.7 bits (65), Expect = 0.048
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 2 NAPVFSDFVYQATVKENQPIGTLVITLKAADAD 34
N PV S V+ T+ + P ++ +DAD
Sbjct: 3 NGPVPSPRVF--TMCDQNPEPQVL---TISDAD 30
>d1xp4a1 b.105.1.1 (A:294-386) D,D-carboxypeptidase DacA,
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 93
Score = 24.4 bits (53), Expect = 2.9
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 11 YQATVKENQPIGTLVITLK 29
A ++ +G L K
Sbjct: 58 IPAPLEAGTVVGHLTYEDK 76
>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA
{Borrelia burgdorferi [TaxId: 139]}
Length = 322
Score = 24.8 bits (54), Expect = 3.4
Identities = 2/31 (6%), Positives = 8/31 (25%)
Query: 44 YSVRGGDGLGYFTIDNEGPLNHFRIVPTKID 74
+ + + I + + + D
Sbjct: 64 FYTCREKSVAFAIIGKNPIEDGMNFIVSHTD 94
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 24.0 bits (51), Expect = 5.7
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 47 RGGDGLGYFTIDNEGPLNHFRIVPTKIDPGTKKKEYNI 84
RG D G +D EG + R + +E+ +
Sbjct: 26 RGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPL 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.138 0.410
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,002
Number of extensions: 20403
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 15
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)