BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10470
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 33/44 (75%)
Query: 164 SKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+PGMLDFKGKAKW+AW KG SK+DA AYI KV EL KYG
Sbjct: 42 ERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYG 85
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 33/43 (76%)
Query: 165 KPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+PGMLDFKGKAKW+AW KG SK+DA +YI KV EL KYG
Sbjct: 43 RPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYG 85
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 32/44 (72%)
Query: 164 SKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+PGMLDF GKAKW+AW KG SK+DA AYI KV EL KYG
Sbjct: 43 ERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYG 86
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 33/42 (78%)
Query: 166 PGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
PGMLD KGKAKWEAW +KG S +DA +AYI+K EL+ KYG
Sbjct: 47 PGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKYG 88
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 32/44 (72%)
Query: 164 SKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+PGMLDF GKAKW+AW KG SK+DA AYI KV EL KYG
Sbjct: 42 ERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYG 85
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+ KPG+ + K + KWEAWE+ KG+S++DA+ YIA V +L+AKY
Sbjct: 41 KEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKYS 85
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 164 SKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAK 205
S+PG++DF GKAKW+AW+S +G SK+ A Y+ K++E++ K
Sbjct: 49 SRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKLLEILKK 90
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 140 FGKPGMLDFKGKAKWEAWESRKGRSK 165
+PG++DF GKAKW+AW+S +G SK
Sbjct: 48 ISRPGLMDFTGKAKWDAWKSVEGTSK 73
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 162 GRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVA 204
+ KPGML + K KWEAW + +G S + A+ AY+ K+++ +A
Sbjct: 50 NKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYV-KLLDTLA 91
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 142 KPGMLDFKGKAKWEAWESRKGRS 164
KPGML + K KWEAW + +G S
Sbjct: 53 KPGMLQLQEKYKWEAWNALRGMS 75
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 165 KPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVEL 202
KP DF+GK KWEAW++ S A YIA V +L
Sbjct: 50 KPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKL 87
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 142 KPGMLDFKGKAKWEAWESRKGRSKP 166
KP DF+GK KWEAW++ G S P
Sbjct: 50 KPSFFDFEGKQKWEAWKAL-GDSSP 73
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 164 SKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELV 203
S+PG D G+ KW+AW S +K++A AY+ ++ +++
Sbjct: 69 SRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKII 108
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 165 KPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAK 205
+PG D G+ KW+AW S S+++A +AYI + ++LVA+
Sbjct: 54 RPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITE-MKLVAQ 93
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 155 EAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYI 196
+A E KPG+ D KAKW+AW + K+ A+ Y+
Sbjct: 48 QATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 89
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 142 KPGMLDFKGKAKWEAWES 159
KPG+ D KAKW+AW +
Sbjct: 58 KPGVFDLINKAKWDAWNA 75
>pdb|4GVO|A Chain A, Putative L-Cystine Abc Transporter From Listeria
Monocytogenes
pdb|4GVO|B Chain B, Putative L-Cystine Abc Transporter From Listeria
Monocytogenes
Length = 243
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 40 IAYTQNSCQLYTKFRGKDSRKERRE--GERVITSSESKNSTACRRFCQSVGNNFLCSYVG 97
+AY QL T +S ++ G+RVITS+ S + ++ + GNNF +Y G
Sbjct: 92 VAYNNFPLQL-TVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEG 150
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 137 SKIFGKPGMLDFKGKAKWEAWESRKGRS-------KPGMLDFKGKAKWEAWESRKGQSKD 189
S I G P ++ + K + ++ K + +P + + K+EAW+S + +++
Sbjct: 11 SFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNRE 70
Query: 190 DAQAAYIAKVVEL 202
DAQ Y+ V E+
Sbjct: 71 DAQKRYVDIVSEI 83
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 141 GKPGMLDFKGKAKWEAWESRKGRSKPGMLDFKGKAK 176
G+P DF+ K WE E + G+LDFK AK
Sbjct: 129 GEPRKFDFEPKPHWEIGE------RLGILDFKRGAK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,325,531
Number of Sequences: 62578
Number of extensions: 246274
Number of successful extensions: 531
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 33
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)