Query psy10470
Match_columns 209
No_of_seqs 154 out of 750
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 19:02:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00458 acyl CoA binding prot 100.0 8.3E-30 1.8E-34 194.7 9.2 86 117-208 3-88 (90)
2 cd00435 ACBP Acyl CoA binding 100.0 1.8E-29 3.9E-34 189.9 8.8 85 115-207 1-85 (85)
3 PF00887 ACBP: Acyl CoA bindin 100.0 1E-28 2.2E-33 183.9 8.5 87 115-207 1-87 (87)
4 KOG0817|consensus 99.9 1.5E-26 3.1E-31 189.7 8.9 87 114-208 4-90 (142)
5 COG4281 ACB Acyl-CoA-binding p 99.9 8.2E-24 1.8E-28 159.8 8.0 86 115-208 2-87 (87)
6 KOG3878|consensus 99.3 7.2E-13 1.6E-17 122.9 4.7 98 109-207 20-122 (469)
7 smart00295 B41 Band 4.1 homolo 96.8 0.0047 1E-07 49.9 6.6 86 114-208 98-204 (207)
8 PF00373 FERM_M: FERM central 95.9 0.033 7.2E-07 41.8 6.7 86 114-208 10-123 (126)
9 KOG3530|consensus 88.1 1.2 2.6E-05 44.8 6.2 80 126-207 108-199 (616)
10 smart00035 CLa CLUSTERIN alpha 59.9 13 0.00029 33.2 4.0 69 65-149 53-121 (216)
11 PF05819 NolX: NolX protein; 51.4 36 0.00077 34.4 5.8 113 83-199 294-440 (624)
12 PF01093 Clusterin: Clusterin; 49.9 19 0.00041 35.1 3.6 72 65-152 267-338 (436)
13 KOG3529|consensus 36.7 20 0.00044 36.1 1.7 67 139-207 125-211 (596)
14 PF10987 DUF2806: Protein of u 30.6 52 0.0011 28.7 3.1 42 139-192 53-94 (219)
15 PTZ00120 D-tyrosyl-tRNA(Tyr) d 25.3 1.2E+02 0.0026 25.7 4.2 39 155-207 79-118 (154)
16 PF01591 6PF2K: 6-phosphofruct 23.8 4.3E+02 0.0094 23.2 7.6 112 73-208 65-177 (222)
17 COG4283 Uncharacterized conser 23.6 5E+02 0.011 22.7 8.2 61 143-203 48-116 (170)
18 cd00563 Dtyr_deacylase D-Tyros 23.5 1.3E+02 0.0028 25.3 4.0 38 155-206 78-117 (145)
19 PF02580 Tyr_Deacylase: D-Tyr- 23.4 1E+02 0.0022 25.7 3.4 38 155-206 77-116 (145)
20 PF08020 DUF1706: Protein of u 22.9 3.7E+02 0.008 22.7 6.7 62 143-204 48-117 (166)
21 TIGR00256 D-tyrosyl-tRNA(Tyr) 20.6 1.7E+02 0.0036 24.6 4.1 37 155-205 78-116 (145)
No 1
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.96 E-value=8.3e-30 Score=194.69 Aligned_cols=86 Identities=22% Similarity=0.353 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHHHH
Q psy10470 117 RVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYI 196 (209)
Q Consensus 117 ~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~kPG~~D~~graKwnAWkqlkgMSkeEAmkeYI 196 (209)
..|++|+..+. +.++.+.++++++|+|||||| |||+|||+.++||+||+++|+||+||++++|||++|||++||
T Consensus 3 ~~F~~A~~~v~-----~~~~~~~~s~d~~L~lYalyK-QAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI 76 (90)
T PTZ00458 3 DLFEECVSFIN-----SLPKTVNLSVEIKLDLYKYYK-QSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYV 76 (90)
T ss_pred HHHHHHHHHHH-----hCCCCCCCCHHHHHHHHHHHh-hhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45999999987 344556789999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC
Q psy10470 197 AKVVELVAKYGK 208 (209)
Q Consensus 197 elVeeL~pkyg~ 208 (209)
++|+++.|+|+.
T Consensus 77 ~l~~~l~~~w~~ 88 (90)
T PTZ00458 77 EIVTELFPNWEK 88 (90)
T ss_pred HHHHHHhhcccc
Confidence 999999999975
No 2
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.96 E-value=1.8e-29 Score=189.86 Aligned_cols=85 Identities=42% Similarity=0.646 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHH
Q psy10470 115 LDRVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAA 194 (209)
Q Consensus 115 Le~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~kPG~~D~~graKwnAWkqlkgMSkeEAmke 194 (209)
|+..|++|+..+.... ..++++++|+|||||| |||+|||+.++||+||+++++||+||++++|||++|||+.
T Consensus 1 ~~~~F~~A~~~v~~~~-------~~~~~~~~L~lYalyK-QAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~ 72 (85)
T cd00435 1 LQEEFEAAAEKVKKLK-------TKPSNEEKLQLYSLYK-QATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKA 72 (85)
T ss_pred ChHHHHHHHHHHHhCC-------CCcCHHHHHHHHHHHH-HhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHH
Confidence 4578999999987433 4789999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy10470 195 YIAKVVELVAKYG 207 (209)
Q Consensus 195 YIelVeeL~pkyg 207 (209)
||+++++++|+||
T Consensus 73 YV~~~~~l~~~~~ 85 (85)
T cd00435 73 YIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHHhhccC
Confidence 9999999999997
No 3
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.95 E-value=1e-28 Score=183.90 Aligned_cols=87 Identities=31% Similarity=0.543 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHH
Q psy10470 115 LDRVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAA 194 (209)
Q Consensus 115 Le~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~kPG~~D~~graKwnAWkqlkgMSkeEAmke 194 (209)
|+..|+.|+..+..... ...++++++|+|||||| |||+|||+.++||++|+++++||+||++++|||++|||++
T Consensus 1 Le~~F~~A~~~v~~~~~-----~~~~~~~~~L~LYalyK-QAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~ 74 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPK-----KSQLSNDDKLELYALYK-QATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMRE 74 (87)
T ss_dssp HHHHHHHHHHHHHHSSS-----CSTS-HHHHHHHHHHHH-HHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccc-----cCCCCHHHHHHHHHHHH-HHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHH
Confidence 67899999999883332 25789999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy10470 195 YIAKVVELVAKYG 207 (209)
Q Consensus 195 YIelVeeL~pkyg 207 (209)
||++|++++++|.
T Consensus 75 Yi~~v~~~~~~~~ 87 (87)
T PF00887_consen 75 YIELVEELIPKYE 87 (87)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999984
No 4
>KOG0817|consensus
Probab=99.93 E-value=1.5e-26 Score=189.71 Aligned_cols=87 Identities=37% Similarity=0.583 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCCCCCCChhHHHHHHHHhhCCCCCHHHHHH
Q psy10470 114 GLDRVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQA 193 (209)
Q Consensus 114 eLe~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~kPG~~D~~graKwnAWkqlkgMSkeEAmk 193 (209)
.+...|++|+..++.... .++++++|+|||||| |||+|||++++||+||++||+||+||++++|||++|||+
T Consensus 4 ~~~~~Fe~a~~~~~~l~~-------~p~~ee~L~lYglyK-QAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~ 75 (142)
T KOG0817|consen 4 TLEAKFEAAAEAVKNLKK-------KPSNEELLKLYGLYK-QATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAME 75 (142)
T ss_pred hHHHHHHHHHHHHHhccc-------CCCHHHHHHHHHHHH-hhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHH
Confidence 467789999998884444 368999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy10470 194 AYIAKVVELVAKYGK 208 (209)
Q Consensus 194 eYIelVeeL~pkyg~ 208 (209)
.||+++.+++++|+.
T Consensus 76 ~Yv~~~~~l~~~~~~ 90 (142)
T KOG0817|consen 76 AYVEKVEELIPKYGA 90 (142)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999985
No 5
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.90 E-value=8.2e-24 Score=159.83 Aligned_cols=86 Identities=33% Similarity=0.495 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHH
Q psy10470 115 LDRVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAA 194 (209)
Q Consensus 115 Le~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~kPG~~D~~graKwnAWkqlkgMSkeEAmke 194 (209)
+.-.|+.|..-++.... ..+++++|+|||||| |+++||.+..+||+||++|++||+||..|+|.|+++|.++
T Consensus 2 ~s~~Feqa~~dV~~L~~-------kP~~d~LLkLYAL~K-Q~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qe 73 (87)
T COG4281 2 LSTRFEQAQTDVKELSE-------KPSNDELLKLYALFK-QGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQE 73 (87)
T ss_pred hhhHHHHHHHHHHHhcc-------CCCcHHHHHHHHHHH-hccccccCCCCCCccccccchhHHHHhhccCccHHHHHHH
Confidence 45579988777763332 457999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy10470 195 YIAKVVELVAKYGK 208 (209)
Q Consensus 195 YIelVeeL~pkyg~ 208 (209)
||.+|++|..+|++
T Consensus 74 YialVeeLkak~~~ 87 (87)
T COG4281 74 YIALVEELKAKYGT 87 (87)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999999984
No 6
>KOG3878|consensus
Probab=99.34 E-value=7.2e-13 Score=122.86 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=89.0
Q ss_pred ccCchhhHHHHH--HHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCC-CC--CCCChhHHHHHHHHhhC
Q psy10470 109 RANNSGLDRVFR--ALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRS-KP--GMLDFKGKAKWEAWESR 183 (209)
Q Consensus 109 ~~~~~eLe~~Fe--eAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~-kP--G~~D~~graKwnAWkql 183 (209)
+++.++.+|+|. ++|+++-+|++.+.+|..+++++++|+|.+|.| |+.+|++|+. .| |++|++|+.+..+|..|
T Consensus 20 ea~~~~~~wGf~LeElY~LA~~fyKe~~GKa~h~~YEd~lKLial~k-Qv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~L 98 (469)
T KOG3878|consen 20 EAPSSAEKWGFPLEELYRLAFTFYKENSGKAIHLSYEDNLKLIALKK-QVALGPFNTDRAPALGVLDVIGNDRQQHWQLL 98 (469)
T ss_pred hhhhHHHHhCCCHHHHHHHHHHHHHhccCCccCCChhhhhhhhhhHh-hhhcCCCCcccCcccceeecccChHHHHHHHH
Confidence 444446788887 999999999999999999999999999999999 9999999954 34 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhc
Q psy10470 184 KGQSKDDAQAAYIAKVVELVAKYG 207 (209)
Q Consensus 184 kgMSkeEAmkeYIelVeeL~pkyg 207 (209)
+.||+++||..||.+++.+++.|-
T Consensus 99 G~~sre~AM~~FV~Lldr~C~~F~ 122 (469)
T KOG3878|consen 99 GEISREQAMEGFVDLLDRMCSAFR 122 (469)
T ss_pred hcccHHHHHHHHHHHHHhcchhhh
Confidence 999999999999999999988764
No 7
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=96.76 E-value=0.0047 Score=49.89 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCC-------------C-CCCCh-------h
Q psy10470 114 GLDRVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSK-------------P-GMLDF-------K 172 (209)
Q Consensus 114 eLe~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~k-------------P-G~~D~-------~ 172 (209)
.++--|..+...+.+.. -+.+.++...|-||.- |+..|+++.+. | ++.+. .
T Consensus 98 ~~~~ly~Q~~~di~~g~-------~~~~~~~~~~Laal~~-q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~ 169 (207)
T smart00295 98 RLNLLYLQVRNDILEGR-------LPCPEEEALLLAALAL-QAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEW 169 (207)
T ss_pred HHHHHHHHHHHHHHcCc-------cCCCHHHHHHHHHHHH-HHHhcCCChHhcCCccccccceeCChhhhhhccccHHHH
Confidence 34455555555443111 2445778889999999 99999987422 1 11111 1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy10470 173 GKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYGK 208 (209)
Q Consensus 173 graKwnAWkqlkgMSkeEAmkeYIelVeeL~pkyg~ 208 (209)
...-.++|+++.|||+.+||.+||+++.++ |.||.
T Consensus 170 ~~~i~~~~~~~~~~s~~~a~~~yl~~~~~l-p~fG~ 204 (207)
T smart00295 170 RERIVSLHKELIGLSPEEAKLKYLELAEKL-PTYGV 204 (207)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhccc-cccCc
Confidence 222348999999999999999999999988 99986
No 8
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=95.93 E-value=0.033 Score=41.83 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCC---CCC-------------CC--h----
Q psy10470 114 GLDRVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSK---PGM-------------LD--F---- 171 (209)
Q Consensus 114 eLe~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~k---PG~-------------~D--~---- 171 (209)
+++--|..+..-+.+.. -+.+.++-++|-||.- |+..|+++... .+. +. .
T Consensus 10 ~~~lly~Q~~~~vl~g~-------~~~~~e~a~~LAAl~~-q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~ 81 (126)
T PF00373_consen 10 TRHLLYLQARRDVLQGR-------LPCSEEDAIKLAALQL-QAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIK 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTS-------STS-HHHHHHHHHHHH-HHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCc-------CCCCHHHHHHHHHHHH-HHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHh
Confidence 45555666665544221 2556788899999999 99999998221 222 12 0
Q ss_pred -hHHHH-----HHHHhhCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy10470 172 -KGKAK-----WEAWESRKGQSKDDAQAAYIAKVVELVAKYGK 208 (209)
Q Consensus 172 -~graK-----wnAWkqlkgMSkeEAmkeYIelVeeL~pkyg~ 208 (209)
..... -..|+++.|||..+||..||+++.+ +|.||.
T Consensus 82 ~~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~-~p~yG~ 123 (126)
T PF00373_consen 82 KMKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQS-LPTYGS 123 (126)
T ss_dssp CSTHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCT-STTTTE
T ss_pred hhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhc-CCCCCc
Confidence 11112 2889999999999999999999997 488874
No 9
>KOG3530|consensus
Probab=88.07 E-value=1.2 Score=44.80 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=54.9
Q ss_pred HhhhhhccccccCCCCcchhhhHHHhhhcccccCCCCCCC--CCC---CCh-------hHHHHHHHHhhCCCCCHHHHHH
Q psy10470 126 LGQHRLSCAFKSKIFGKPGMLDFKGKAKWEAWESRKGRSK--PGM---LDF-------KGKAKWEAWESRKGQSKDDAQA 193 (209)
Q Consensus 126 a~~~~~~~~~K~g~~s~d~kL~LYALYK~QAT~Gdcn~~k--PG~---~D~-------~graKwnAWkqlkgMSkeEAmk 193 (209)
..|.+++.+.-.-.-+.+.--+|=||-= |+-.|||+.+. |+. |.+ -..+=.+-|++++|+++.+|+-
T Consensus 108 flQlKqDll~GRL~Cp~~~AaeLaAl~l-QsELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAEl 186 (616)
T KOG3530|consen 108 FLQLKQDLLSGRLYCPFETAAELAALIL-QSELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAEL 186 (616)
T ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHH-HHHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3445555554333445666677888877 99999999553 443 222 2344469999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy10470 194 AYIAKVVELVAKYG 207 (209)
Q Consensus 194 eYIelVeeL~pkyg 207 (209)
+|++.+.-| +-||
T Consensus 187 nyLnkAkwL-emYG 199 (616)
T KOG3530|consen 187 NYLNKAKWL-EMYG 199 (616)
T ss_pred HHHhhhhhh-hhcc
Confidence 999988643 4454
No 10
>smart00035 CLa CLUSTERIN alpha chain.
Probab=59.88 E-value=13 Score=33.20 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=42.8
Q ss_pred cCeeeeccccccchHHHHHHHhhchhhhhhhhhhhhcCCcccccccCchhhHHHHHHHHHHHhhhhhccccccCCCCcch
Q psy10470 65 GERVITSSESKNSTACRRFCQSVGNNFLCSYVGAKISGKDLAYLRANNSGLDRVFRALSKKLGQHRLSCAFKSKIFGKPG 144 (209)
Q Consensus 65 ~~~~~~~~~~~~~~~c~r~~~~i~~~~~~~~v~avl~~~d~~~~~~~~~eLe~~FeeAvk~a~~~~~~~~~K~g~~s~d~ 144 (209)
..|-+.----.||++|.++..+ |+--.++|+-|=...- --+..|...|++|..+++.+.+ .+++
T Consensus 53 ~dr~vCrEiRrNSsgClkm~dq------CEKCqeiLsvDCs~~~-P~q~~Lr~El~eAL~LaE~ftq---------qYd~ 116 (216)
T smart00035 53 DDRTVCKEIRHNSTGCLKMKDQ------CEKCQEILSVDCSTNN-PDQPQLRQELDESLQLAERFTQ---------QYDQ 116 (216)
T ss_pred CccchHHHHhcCcHHHHHHHHH------HHHHHHHHhhhccCCC-cchHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 3344444445799999998765 5555666665422211 1224788889999888886665 4566
Q ss_pred hhhHH
Q psy10470 145 MLDFK 149 (209)
Q Consensus 145 kL~LY 149 (209)
.|..|
T Consensus 117 lL~~~ 121 (216)
T smart00035 117 LLQSY 121 (216)
T ss_pred HHHHH
Confidence 65544
No 11
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=51.40 E-value=36 Score=34.42 Aligned_cols=113 Identities=15% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHHhhchh-hhhhhhhh--------hhcCCcccccccCchhhHHHHH-HHHHHHhhhhhccccccC-CC----Ccchhhh
Q psy10470 83 FCQSVGNN-FLCSYVGA--------KISGKDLAYLRANNSGLDRVFR-ALSKKLGQHRLSCAFKSK-IF----GKPGMLD 147 (209)
Q Consensus 83 ~~~~i~~~-~~~~~v~a--------vl~~~d~~~~~~~~~eLe~~Fe-eAvk~a~~~~~~~~~K~g-~~----s~d~kL~ 147 (209)
-.+.+-.+ .|-.+||. +|..+|+-....+ |..=+.|. +-.+-..+.+..+-.+.+ .. .+|.+-+
T Consensus 294 Al~~L~~DP~lf~AigsqgdGkcgGKI~AkDls~fs~~-H~qva~y~~~qA~~Y~qnYipSD~~~~~~psvMT~nDA~RE 372 (624)
T PF05819_consen 294 ALQALQQDPALFYAIGSQGDGKCGGKIKAKDLSKFSSH-HPQVAEYAEQQAESYTQNYIPSDSKDNAQPSVMTENDAMRE 372 (624)
T ss_pred HHHHHhhChHHHHHhccCCCCCcCCeechhhHHHHHhc-ChHHHHHHHHHhhhhhhccCCCCCCCCCCCcccchhHHHHH
Confidence 33444444 66677755 5666676666443 44445565 222333333433333322 21 2677778
Q ss_pred HHHh------------hhcccccCCCCCC-CCCCCChhHHHHH-----HHHhhC-CCCCHHHHHHHHHHHH
Q psy10470 148 FKGK------------AKWEAWESRKGRS-KPGMLDFKGKAKW-----EAWESR-KGQSKDDAQAAYIAKV 199 (209)
Q Consensus 148 LYAL------------YK~QAT~Gdcn~~-kPG~~D~~graKw-----nAWkql-kgMSkeEAmkeYIelV 199 (209)
||-| || |...|+..+. .|. .+++.++| ++|+++ +|=+..--+..|++.+
T Consensus 373 LYrYSdyLPK~L~~~~f~-~IVdG~s~tgKcPP--QViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~a 440 (624)
T PF05819_consen 373 LYRYSDYLPKNLSLEDFK-QIVDGDSKTGKCPP--QVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVA 440 (624)
T ss_pred HHHhhhccccccCHHHHH-hHhcCccccCCCCH--HHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHH
Confidence 8866 45 7777887754 354 78999998 999999 4433333333344433
No 12
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=49.88 E-value=19 Score=35.14 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=49.9
Q ss_pred cCeeeeccccccchHHHHHHHhhchhhhhhhhhhhhcCCcccccccCchhhHHHHHHHHHHHhhhhhccccccCCCCcch
Q psy10470 65 GERVITSSESKNSTACRRFCQSVGNNFLCSYVGAKISGKDLAYLRANNSGLDRVFRALSKKLGQHRLSCAFKSKIFGKPG 144 (209)
Q Consensus 65 ~~~~~~~~~~~~~~~c~r~~~~i~~~~~~~~v~avl~~~d~~~~~~~~~eLe~~FeeAvk~a~~~~~~~~~K~g~~s~d~ 144 (209)
.+|.+.-.-..||++|.+|-. -|+.-.++|..+=-++-+ ...+|...|++|..+++.+.+ .+++
T Consensus 267 ~dR~lCrElRrNSSGClk~~~------~CEKCqeiL~~DCs~~~P-~v~eL~~Eleeal~Lae~s~q---------QY~~ 330 (436)
T PF01093_consen 267 QDRMLCRELRRNSSGCLKFQD------QCEKCQEILSVDCSGKNP-SVPELHEELEEALRLAEKSTQ---------QYDQ 330 (436)
T ss_pred CCccchHHHhhcchhhhhHHH------HHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 456666666789999999865 466667777543222222 224899999999999987766 5788
Q ss_pred hhhHHHhh
Q psy10470 145 MLDFKGKA 152 (209)
Q Consensus 145 kL~LYALY 152 (209)
.|.+|-..
T Consensus 331 lLq~~Q~h 338 (436)
T PF01093_consen 331 LLQMVQHH 338 (436)
T ss_pred HHHHHHHH
Confidence 88777543
No 13
>KOG3529|consensus
Probab=36.66 E-value=20 Score=36.08 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=45.5
Q ss_pred CCCcchhhhHHHhhhcccccCCCCC--CCCCCCCh-------------hHHHHH-----HHHhhCCCCCHHHHHHHHHHH
Q psy10470 139 IFGKPGMLDFKGKAKWEAWESRKGR--SKPGMLDF-------------KGKAKW-----EAWESRKGQSKDDAQAAYIAK 198 (209)
Q Consensus 139 ~~s~d~kL~LYALYK~QAT~Gdcn~--~kPG~~D~-------------~graKw-----nAWkqlkgMSkeEAmkeYIel 198 (209)
..+.+....|-+|-= ||.+||.+. ...|..+. ...++| .=|....||+.++||-+|..+
T Consensus 125 ~~~~E~~~~las~~v-qa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki 203 (596)
T KOG3529|consen 125 YCPPETSVLLASYAV-QAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKI 203 (596)
T ss_pred CCCchHHHHHHHHHH-HHHhccccchhhhhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 445677777777777 999998762 22232211 133444 346679999999999999999
Q ss_pred HHHHHHhhc
Q psy10470 199 VVELVAKYG 207 (209)
Q Consensus 199 VeeL~pkyg 207 (209)
+.+ ++-||
T Consensus 204 ~qd-le~yg 211 (596)
T KOG3529|consen 204 AQD-LEMYG 211 (596)
T ss_pred hcc-ccccc
Confidence 988 56665
No 14
>PF10987 DUF2806: Protein of unknown function (DUF2806); InterPro: IPR021254 This bacterial family of proteins has no known function.
Probab=30.62 E-value=52 Score=28.68 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=31.9
Q ss_pred CCCcchhhhHHHhhhcccccCCCCCCCCCCCChhHHHHHHHHhhCCCCCHHHHH
Q psy10470 139 IFGKPGMLDFKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQ 192 (209)
Q Consensus 139 ~~s~d~kL~LYALYK~QAT~Gdcn~~kPG~~D~~graKwnAWkqlkgMSkeEAm 192 (209)
.++++.|-+|+|- .--|.+ .+||.+.+ .+..-|+.||++||+
T Consensus 53 ~isn~~mQ~LWak----ILa~Ei--~~PGs~Sl------rtL~~Lk~mt~~eA~ 94 (219)
T PF10987_consen 53 DISNEEMQELWAK----ILAGEI--KNPGSFSL------RTLQTLKQMTKKEAQ 94 (219)
T ss_pred hcCcHHHHHHHHH----HHHHHh--cCCCCCCH------HHHHHHHhCCHHHHH
Confidence 5578888888873 233433 48998887 488889999999997
No 15
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=25.29 E-value=1.2e+02 Score=25.73 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=31.1
Q ss_pred ccccCCCC-CCCCCCCChhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhc
Q psy10470 155 EAWESRKG-RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207 (209)
Q Consensus 155 QAT~Gdcn-~~kPG~~D~~graKwnAWkqlkgMSkeEAmkeYIelVeeL~pkyg 207 (209)
|.|..+|. ..+|+|.+ -|++++|+..|-..++.+...++
T Consensus 79 QFTL~~~~KG~RPsF~~--------------aa~~~~A~~Ly~~f~~~l~~~~~ 118 (154)
T PTZ00120 79 QFTLFNVKKGNKPDFHL--------------AMSPEDALPLYNKFVEKFKKEYA 118 (154)
T ss_pred ccccccCCCCCCCCccc--------------cCCHHHHHHHHHHHHHHHHhcCC
Confidence 78888773 66897644 57899999999999999887763
No 16
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=23.82 E-value=4.3e+02 Score=23.22 Aligned_cols=112 Identities=16% Similarity=0.277 Sum_probs=58.3
Q ss_pred ccccchHHHHHHHhhchhhhhhhhhhhh-cCCcccccccCchhhHHHHHHHHHHHhhhhhccccccCCCCcchhhhHHHh
Q psy10470 73 ESKNSTACRRFCQSVGNNFLCSYVGAKI-SGKDLAYLRANNSGLDRVFRALSKKLGQHRLSCAFKSKIFGKPGMLDFKGK 151 (209)
Q Consensus 73 ~~~~~~~c~r~~~~i~~~~~~~~v~avl-~~~d~~~~~~~~~eLe~~FeeAvk~a~~~~~~~~~K~g~~s~d~kL~LYAL 151 (209)
...+.+.-.++++++=..+|.+.+.-.- ++|++|=.+++|+..+++= .+++.+.++....+.=...-.+++.++--=.
T Consensus 65 f~p~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~-~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~ 143 (222)
T PF01591_consen 65 FDPDNEEAKKLREQIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRK-MLVERFKEHGIKVLFIESICDDPEIIERNIR 143 (222)
T ss_dssp GSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHH-HHHHHHHHTT-EEEEEEEE---HHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHcCCcEEEEEEEeCCHHHHHHHHH
Confidence 3445666778999999999999988877 7999999999999655542 2233332111000000001112222221111
Q ss_pred hhcccccCCCCCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy10470 152 AKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYGK 208 (209)
Q Consensus 152 YK~QAT~Gdcn~~kPG~~D~~graKwnAWkqlkgMSkeEAmkeYIelVeeL~pkyg~ 208 (209)
-| ..+ .| ...||++++|.+.|-+-++.+-+.|..
T Consensus 144 ~~---~~~-----sp---------------DY~~~~~e~A~~Df~~RI~~Ye~~YEp 177 (222)
T PF01591_consen 144 EK---KQN-----SP---------------DYKGMDPEEAIEDFKKRIEHYEKVYEP 177 (222)
T ss_dssp HH---HTT-----SG---------------GGTTS-HHHHHHHHHHHHHHHHTT---
T ss_pred HH---HcC-----Cc---------------ccccCCHHHHHHHHHHHHHhhcccccc
Confidence 11 110 01 246899999999999999998887764
No 17
>COG4283 Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=5e+02 Score=22.67 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=43.8
Q ss_pred chhhhHHHhhhc------ccccCCCC-CCCCCC-CChhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q psy10470 143 PGMLDFKGKAKW------EAWESRKG-RSKPGM-LDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELV 203 (209)
Q Consensus 143 d~kL~LYALYK~------QAT~Gdcn-~~kPG~-~D~~graKwnAWkqlkgMSkeEAmkeYIelVeeL~ 203 (209)
|.+..+|+...- --.-|.-. +|.||+ |+--|-.-..-|+....+|-.|+++..-+-++.+.
T Consensus 48 d~l~hl~eWh~LlL~W~~~e~~G~~~f~Ps~~ykWn~~geln~~F~kkyq~~SL~e~~~~L~k~h~~v~ 116 (170)
T COG4283 48 DNLAHLVEWHNLLLNWEQDEKRGLKVFTPSPGYKWNNLGELNQWFWKKYQHLSLKELKAKLNKNHNDVY 116 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCcccccHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 556677765420 22445544 778877 77777777789999999999999998877666544
No 18
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=23.53 E-value=1.3e+02 Score=25.28 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=28.8
Q ss_pred cccc-CCC-CCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10470 155 EAWE-SRK-GRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKY 206 (209)
Q Consensus 155 QAT~-Gdc-n~~kPG~~D~~graKwnAWkqlkgMSkeEAmkeYIelVeeL~pky 206 (209)
|.|. |++ ...+|+|.. -|++++|+..|-..++++...+
T Consensus 78 QFTL~~~~~KG~rP~F~~--------------a~~~e~A~~ly~~fv~~l~~~~ 117 (145)
T cd00563 78 QFTLYADTKKGRRPSFSA--------------AAPPDKAEPLYESFVELLREKG 117 (145)
T ss_pred ccccccccCCCCCCCccc--------------cCCHHHHHHHHHHHHHHHHHcC
Confidence 5554 556 467887654 4789999999999999987665
No 19
>PF02580 Tyr_Deacylase: D-Tyr-tRNA(Tyr) deacylase; InterPro: IPR003732 This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterisation with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0019478 D-amino acid catabolic process, 0005737 cytoplasm; PDB: 3LMU_F 3LMT_B 3KNF_B 3KOC_C 3KNP_D 3KO9_F 3KO3_B 3KO5_C 3KOB_D 3LMV_E ....
Probab=23.38 E-value=1e+02 Score=25.69 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=26.9
Q ss_pred cccc-CCC-CCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy10470 155 EAWE-SRK-GRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKY 206 (209)
Q Consensus 155 QAT~-Gdc-n~~kPG~~D~~graKwnAWkqlkgMSkeEAmkeYIelVeeL~pky 206 (209)
|.|. |++ ...+|++.. .|++++|...|-..++++...+
T Consensus 77 QFTL~g~~~kG~rp~f~~--------------a~~~~~a~~ly~~f~~~l~~~~ 116 (145)
T PF02580_consen 77 QFTLYGDTKKGNRPSFHN--------------AAPPEEAEELYERFVEKLREEY 116 (145)
T ss_dssp -GGGGSBCSSSSSEBGTT--------------B--HHHHHHHHHHHHHHHHHHS
T ss_pred eeeeeeeccCCCCccccc--------------cCCHHHHHHHHHHHHHHHHHhC
Confidence 4444 566 467886543 6889999999999999988877
No 20
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=22.93 E-value=3.7e+02 Score=22.72 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=45.8
Q ss_pred chhhhHHHhhhc------ccccCCCC-CCCCCC-CChhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q psy10470 143 PGMLDFKGKAKW------EAWESRKG-RSKPGM-LDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVA 204 (209)
Q Consensus 143 d~kL~LYALYK~------QAT~Gdcn-~~kPG~-~D~~graKwnAWkqlkgMSkeEAmkeYIelVeeL~p 204 (209)
|..-.||+...- ....|... .|.||. |+-.|..-..-|.+..+.|-+|+.+.+-+.+++++.
T Consensus 48 DvLayl~gW~~LlL~W~~~~~~G~~~~fp~~gykWn~lg~Ln~~f~~~y~~~sl~e~~~~l~~s~~~v~~ 117 (166)
T PF08020_consen 48 DVLAYLYGWHELLLKWEEDEQAGEEVDFPAPGYKWNQLGELNQSFYEKYQDTSLEELKALLKESHQKVIA 117 (166)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 444556654431 33445543 566777 888888888999999999999999999998888764
No 21
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=20.57 E-value=1.7e+02 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=27.6
Q ss_pred cccc-CCC-CCCCCCCCChhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy10470 155 EAWE-SRK-GRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAK 205 (209)
Q Consensus 155 QAT~-Gdc-n~~kPG~~D~~graKwnAWkqlkgMSkeEAmkeYIelVeeL~pk 205 (209)
|.|. |+| ...+|+|.+ -|++++|+..|-..++++...
T Consensus 78 QFTL~a~~~KG~rPsF~~--------------a~~~~~A~~ly~~fv~~l~~~ 116 (145)
T TIGR00256 78 QFTLAADTKKGMRPSFSK--------------GASPDRAEELYEYFVELCREK 116 (145)
T ss_pred CCcccccCCCCCCCCccc--------------cCCHHHHHHHHHHHHHHHHhc
Confidence 5554 566 466897644 578999999999999888754
Done!