RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10470
(209 letters)
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding,
structural genomics, struct genomics consortium, SGC,
lipid-binding, membrane; HET: STE COA; 1.70A {Homo
sapiens}
Length = 119
Score = 65.1 bits (158), Expect = 5e-14
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYGKK 209
S+PG D G+ KW+AW S +K++A AY+ ++ +++
Sbjct: 68 LSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMPMT 114
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding
protein, fatty acid, lipid metabolism, structural
genomics; HET: COA PLM; 2.00A {Homo sapiens}
Length = 89
Score = 63.3 bits (154), Expect = 8e-14
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+ PGMLD KGKAKWEAW +KG S +DA +AYI+K EL+ KYG
Sbjct: 44 IACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKYG 88
>2lbb_A Acyl COA binding protein; protein binding, structural genomi
seattle structural genomics center for infectious
disease,; NMR {Babesia bovis}
Length = 96
Score = 63.0 bits (153), Expect = 2e-13
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKY 206
+ KPGML + K KWEAW + +G S + A+ AY+ + L +
Sbjct: 51 KPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLAPSW 94
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid
metabolism, lipid binding protein; HET: MES; 1.61A
{Moniliophthora perniciosa}
Length = 106
Score = 63.0 bits (153), Expect = 2e-13
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYGKK 209
S+PG++DF GKAKW+AW+S +G SK+ A Y+ K++E++ K +
Sbjct: 48 ISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKLLEILKKADTE 94
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport
protein; NMR {Saccharomyces cerevisiae}
Length = 86
Score = 61.8 bits (150), Expect = 3e-13
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+ KPG+ + K + KWEAWE+ KG+S++DA+ YIA V +L+AKY
Sbjct: 41 KEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKYS 85
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 61.8 bits (150), Expect = 4e-13
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKY 206
+P + + K+EAW+S + +++DAQ Y+ V E+ +
Sbjct: 44 IKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYW 87
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 61.8 bits (150), Expect = 4e-13
Identities = 29/45 (64%), Positives = 32/45 (71%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
+PGMLDF GKAKW+AW KG SK+DA AYI KV EL KYG
Sbjct: 42 TERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYG 86
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 116
Score = 61.2 bits (148), Expect = 1e-12
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYGKK 209
KPG+ D KAKW+AW + K+ A+ Y+ V L
Sbjct: 56 MPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESS 102
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing,
fatty acid metabolism, lipid transport, lipid binding
protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 60.5 bits (146), Expect = 2e-12
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 163 RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKY 206
+PG D G+ KW+AW S S+++A +AYI ++ + K
Sbjct: 52 VPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKV 95
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding
protein, COA binding protein, lipid binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 109
Score = 60.1 bits (145), Expect = 3e-12
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 145 MLDFKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVA 204
+L + K KP DF+GK KWEAW++ S A YIA V +L
Sbjct: 31 LLYLYARYKQ-VKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDP 89
Query: 205 KY 206
+
Sbjct: 90 GW 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.13
Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 82/198 (41%)
Query: 55 GKDSRKERREGERVITSSESKN--STACRRFCQSVG--------NN--FLCSYVGAKISG 102
G D K TS +++ + A F + G NN L + G + G
Sbjct: 1632 GMDLYK---------TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-KG 1681
Query: 103 KDLAYLRAN------NSGLD------RVFRALSKKLGQHRLSCAFKSKIFGKP-GMLD-- 147
K +R N + +D ++F+ +++ S F G+L
Sbjct: 1682 K---RIRENYSAMIFETIVDGKLKTEKIFKEINEHS---------TSYTFRSEKGLLSAT 1729
Query: 148 -FKGKAKWEAWESRKGRSKPGMLDFKGKAKWEAWESRKGQSKDDAQA----------AYI 196
F ++P + KA +E +S+ D A A +
Sbjct: 1730 QF---------------TQPALTLM-EKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 197 AKV------VELVAKYGK 208
A V VE+V G
Sbjct: 1774 ADVMSIESLVEVVFYRGM 1791
Score = 29.6 bits (66), Expect = 0.96
Identities = 33/216 (15%), Positives = 52/216 (24%), Gaps = 78/216 (36%)
Query: 36 WMILIAYTQNSCQLYTKFRGKDSRKERREGERVITSSESKNSTACRRFCQSVGNNFLCSY 95
+ IL N L F G+ ++ R +I + + + + + SY
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH-STSY 1717
Query: 96 VGAKISGKDLAYLRANNSGLDR--------------VFRALSKK---------LGQHRL- 131
R+ L F L K G H L
Sbjct: 1718 T-----------FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-HSLG 1765
Query: 132 ------SCAFKSKIFGKPGMLDFK---------GKAKWEAWE-SRKGRSKPGMLDFKGKA 175
S A ++ + G A GRS GM+
Sbjct: 1766 EYAALASLA---------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-- 1814
Query: 176 KWEAWESRKGQSKDDAQAAYIAK--------VVELV 203
R S Y+ + +VE+V
Sbjct: 1815 ------GRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 30.2 bits (69), Expect = 0.47
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 155 EAWESRKGRSKPGMLDFKGKAKWEAWESRKGQ 186
+ + KG S+ LD A+W E G+
Sbjct: 209 QKLAACKGHSRSLSLDL--YAQWRCMEDNHGK 238
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 28.3 bits (63), Expect = 2.0
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 172 KGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYGKK 209
+ W K A Y + + + G +
Sbjct: 186 NDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQ 223
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP,
perox oxidoreductase; HET: NAG MAN HEM; 1.30A
{'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A*
1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A*
1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A*
1ly9_A* 1h3j_A* 1ly8_A*
Length = 344
Score = 27.2 bits (60), Expect = 3.7
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 109 RANNSGLDRVFRALSKKLGQHRLSCA 134
N GL AL H +S
Sbjct: 90 FPANGGLTDTIEALRAVGINHGVSFG 115
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,,
oxidoreductase; HET: NAG MAN A2G HEM; 1.70A
{Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB:
1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Length = 343
Score = 26.8 bits (59), Expect = 4.9
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 109 RANNSGLDRVFRALSKKLGQHRLSCA 134
N GLD V + +H ++
Sbjct: 81 FHPNIGLDEVVAMQKPFVQKHGVTPG 106
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 26.6 bits (59), Expect = 5.8
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 181 ESRKGQSKDDAQAAYIAKVVELVAKYGKK 209
E + Y K+ + K G K
Sbjct: 184 EFGYSVESNHEFITYANKLSYFLEKKGLK 212
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases,
protoporphyrin IX, electron T lignin peroxidase, lignin
degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB:
3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A*
2vka_A*
Length = 331
Score = 26.4 bits (58), Expect = 7.0
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 109 RANNSGLDRVFRALSKKLGQHRLSCA 134
N+G+D + A + +H +S
Sbjct: 75 FPANAGIDEIVSAQKPFVAKHNISAG 100
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes
cervina}
Length = 338
Score = 26.4 bits (58), Expect = 8.1
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 109 RANNSGLDRVFRALSKKLGQHRLSCA 134
N GL+ H +S
Sbjct: 82 FIPNFGLEFTTEGFIPFALAHGVSFG 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.397
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,065,071
Number of extensions: 164698
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 20
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)