RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10470
         (209 letters)



>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 86

 Score = 62.5 bits (152), Expect = 6e-14
 Identities = 30/43 (69%), Positives = 33/43 (76%)

Query: 165 KPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKYG 207
           +PGMLDFKGKAKW+AW   KG SK+DA  AYI KV EL  KYG
Sbjct: 43  RPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYG 85


>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 89

 Score = 62.1 bits (151), Expect = 9e-14
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 164 SKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVELVAKY 206
            +P    +  + K+EAW+S +  +++DAQ  Y+  V E+   +
Sbjct: 45  KEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYW 87


>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
           indiana virus [TaxId: 11277]}
          Length = 409

 Score = 28.3 bits (63), Expect = 0.70
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 8/113 (7%)

Query: 97  GAKISGKDLAYLRANNSGLDRVFRALSKKLGQ---HRLSCAFKSKIFGKPGMLDFKGKA- 152
           G  IS  DL+YL   N G    F  ++  L       +     + I  +   +       
Sbjct: 294 GLPISPVDLSYLAPKNPGTGPAFTIINGTLKYFETRYIRVDIAAPILSRMVGMISGTTTE 353

Query: 153 --KWEAWESRKG--RSKPGMLDFKGKAKWEAWESRKGQSKDDAQAAYIAKVVE 201
              W+ W   +       G+L      K+  +    G    D   +  A+V E
Sbjct: 354 RELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFE 406


>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
           basidiomycete (Phanerochaete chrysosporium) [TaxId:
           5306]}
          Length = 343

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 112 NSGLDRVFRALSKKLGQHRLSCA 134
           N GLD V       + +H ++  
Sbjct: 84  NIGLDEVVAMQKPFVQKHGVTPG 106


>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
           {Arthromyces ramosus [TaxId: 5451]}
          Length = 336

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 7/26 (26%), Positives = 8/26 (30%)

Query: 109 RANNSGLDRVFRALSKKLGQHRLSCA 134
              N GL     AL      H +S  
Sbjct: 82  FPANGGLTDTIEALRAVGINHGVSFG 107


>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate
           carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
          Length = 166

 Score = 25.7 bits (56), Expect = 3.7
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 7   RFEPSTSGLRVSA--LDSLDHSATEVGRTSTWMI 38
           R +P+   + V    +D LD ++   G  S   +
Sbjct: 95  RMDPARDTVLVENTPIDYLDFASPVSGLGSKMGL 128


>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 114

 Score = 24.1 bits (52), Expect = 8.1
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 178 EAWESRKGQSKDDAQAAYIAKVVEL 202
            A ++    S+ +A+  Y+     L
Sbjct: 87  MAHKNCGNMSEIEAKVRYVKLARSL 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,790
Number of extensions: 31641
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 7
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)