BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10471
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3
Length = 1304
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/296 (84%), Positives = 273/296 (92%)
Query: 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
+ P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKA
Sbjct: 1009 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA 1068
Query: 83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1069 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1128
Query: 143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct: 1129 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1188
Query: 203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQ
Sbjct: 1189 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ 1248
Query: 263 YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1249 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQ 46
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+
Sbjct: 661 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR 702
>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
Length = 1307
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/296 (84%), Positives = 272/296 (91%)
Query: 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
+ P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKA
Sbjct: 1012 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA 1071
Query: 83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1072 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1131
Query: 143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct: 1132 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1191
Query: 203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R++Q
Sbjct: 1192 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQ 1251
Query: 263 YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY L
Sbjct: 1252 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYTL 1307
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQ 46
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+
Sbjct: 664 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR 705
>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1
Length = 1304
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/296 (84%), Positives = 273/296 (92%)
Query: 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
+ P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKA
Sbjct: 1009 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA 1068
Query: 83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1069 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1128
Query: 143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct: 1129 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1188
Query: 203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQ
Sbjct: 1189 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ 1248
Query: 263 YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct: 1249 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQ 46
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+
Sbjct: 661 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR 702
>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=prp10 PE=1 SV=3
Length = 1205
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 187/295 (63%), Positives = 237/295 (80%)
Query: 15 IAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF 74
++++ ++ P +++L+ + L + +KVQEN IDLVG+IADRG EYVSAREWMRICF
Sbjct: 902 VSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTIDLVGKIADRGSEYVSAREWMRICF 961
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
EL+++LKAHKK+IRRA VNTFGYI+KAIGP DVLATLLNNLKVQERQNRVCTTVAIAIVA
Sbjct: 962 ELIDMLKAHKKSIRRAAVNTFGYISKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA 1021
Query: 135 ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194
ETC PFTV+PALM +YR PE+NVQNGVLK+L+F+FEYIGE +DY+YA+TPLL DALMDR
Sbjct: 1022 ETCMPFTVVPALMADYRTPEMNVQNGVLKSLAFMFEYIGEQARDYVYAITPLLADALMDR 1081
Query: 195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254
D VHRQTA + IKH++LG G G EDA+ HLLN +WPNI E SPH++ A + ++G+R
Sbjct: 1082 DAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVINAVREGIDGIRNC 1141
Query: 255 LGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVY 309
+G I+ Y++QGLFHP+RKVR+ YW YNS Y+ DA++ YP + +D N Y
Sbjct: 1142 IGVGPIMAYLVQGLFHPSRKVRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNY 1196
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 38/42 (90%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQ 46
++ G++I+QQIA+L+GC+ILPHLKNLV+ I HGL DEQQKV+
Sbjct: 562 RHTGVRIIQQIALLLGCSILPHLKNLVDCIGHGLEDEQQKVR 603
>sp|P49955|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HSH155 PE=1 SV=1
Length = 971
Score = 345 bits (885), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 166/294 (56%), Positives = 205/294 (69%), Gaps = 2/294 (0%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84
P + ++ + L ++ +KV+ N I VG I P Y +EWMRICFELLELLK+
Sbjct: 680 PPINQILPTLTPILRNKHRKVEVNTIKFVGLIGKLAPTYAPPKEWMRICFELLELLKSTN 739
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
K IRR+ TFG+IA+AIGPHDVL LLNNLKVQERQ RVCT VAI IVA+ C P+ VLP
Sbjct: 740 KEIRRSANATFGFIAEAIGPHDVLVALLNNLKVQERQLRVCTAVAIGIVAKVCGPYNVLP 799
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
+MNEY PE NVQNGVLKA+SF+FEYIG M KDYIY +TPLLEDAL DRDLVHRQTA
Sbjct: 800 VIMNEYTTPETNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLEDALTDRDLVHRQTASN 859
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
I H+AL G G EDA HL+N + PNIFETSPH + ++ +E L ALGP + Y+
Sbjct: 860 VITHLALNCSGTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGLEALSQALGPGLFMNYI 919
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
GLFHPA+ VR +W++YN++Y+ QDA++ YP + D Y+ ELD VL
Sbjct: 920 WAGLFHPAKNVRKAFWRVYNNMYVMYQDAMVPFYP-VTPDNNEEYIE-ELDLVL 971
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV 64
++ GIKIVQQI IL+G +L HL L+ I+ L+D+ V+ + +A+ Y
Sbjct: 330 RHTGIKIVQQIGILLGIGVLNHLTGLMSCIKDCLMDDHVPVRIVTAHTLSTLAENS--YP 387
Query: 65 SAREWMRICFE-LLELLKAHKKAIRRATVNTFGYIAKAIGP 104
E + E L + +++H+ + + + G + + P
Sbjct: 388 YGIEVFNVVLEPLWKGIRSHRGKVLSSFLKAVGSMIPLMDP 428
>sp|Q6A070|F179B_MOUSE Protein FAM179B OS=Mus musculus GN=Fam179b PE=3 SV=2
Length = 1759
Score = 35.0 bits (79), Expect = 0.67, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 77 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK-----VQERQNRVCTTVAIA 131
+++L +K I++ + F + K +GP VL+ LL NLK V+E +C +
Sbjct: 440 VKVLADNKLVIKQEYMKIFLKLMKEVGPQRVLSLLLENLKHKHSRVREEVVNICICSLLT 499
Query: 132 IVAETCS----PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187
+E F + PAL++ R V+ L+A + L +G + ++ +
Sbjct: 500 YPSEDFDLPKLSFDLAPALVDSKR----RVRQAALEAFAVLASSMGSGKTNVLFKAVDTV 555
Query: 188 E 188
E
Sbjct: 556 E 556
>sp|Q0DJS1|TOR_ORYSJ Serine/threonine-protein kinase TOR OS=Oryza sativa subsp. japonica
GN=TOR PE=2 SV=3
Length = 2465
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 37 GLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG 96
L DE+ V+E I + GR++++ P YV A+RR +
Sbjct: 600 ALNDEEYHVRELAISVAGRLSEKNPAYV-------------------LPALRRYLIQLLT 640
Query: 97 YIAKAIGP--HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 154
Y+ +++ + A LL L R C + + +A L A + E P
Sbjct: 641 YLDQSMDSKCREESARLLGCLI------RSCARLILPYIAPI---HKALVARLREGTGPN 691
Query: 155 LN--VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLV-HRQTACATI 206
N + GVL + L + G + Y+ + PL+ DAL+D V R+ A AT+
Sbjct: 692 ANNALAAGVLATVGELAKVGGFAMRQYLPELMPLVVDALLDGGAVSKREVAVATL 746
>sp|C0QT41|DAPA_PERMH 4-hydroxy-tetrahydrodipicolinate synthase OS=Persephonella marina
(strain DSM 14350 / EX-H1) GN=dapA PE=3 SV=1
Length = 293
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 265 LQGLFHPARKVRDVYWKIYNSLYI 288
L+G F AR++ D YWK++ +L+I
Sbjct: 222 LEGRFEEARQIHDRYWKLFKTLFI 245
>sp|Q9H583|HEAT1_HUMAN HEAT repeat-containing protein 1 OS=Homo sapiens GN=HEATR1 PE=1 SV=3
Length = 2144
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 133 VAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA 182
+A T +P +LPA+ Y+ E N +N + +S L E+IG M K+ + +
Sbjct: 1813 LATTLAPRVLLPAIKKTYKQIEKNWKNHMGPFMSILQEHIGVMKKEELTS 1862
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,459,259
Number of Sequences: 539616
Number of extensions: 4546293
Number of successful extensions: 13005
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12963
Number of HSP's gapped (non-prelim): 42
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)