Query psy10471
Match_columns 318
No_of_seqs 173 out of 508
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 19:03:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0213|consensus 100.0 7.2E-71 1.6E-75 533.0 27.0 312 7-318 860-1172(1172)
2 COG5181 HSH155 U2 snRNP splice 100.0 7.9E-65 1.7E-69 483.8 25.9 310 7-318 665-975 (975)
3 KOG0213|consensus 99.9 7.5E-26 1.6E-30 220.8 25.0 265 3-269 527-893 (1172)
4 COG5181 HSH155 U2 snRNP splice 99.9 2E-22 4.3E-27 194.0 15.6 273 3-277 332-706 (975)
5 KOG2171|consensus 99.9 2.8E-20 6E-25 190.2 22.2 294 5-302 326-682 (1075)
6 KOG2023|consensus 99.8 7.5E-20 1.6E-24 177.6 16.3 243 4-255 409-693 (885)
7 KOG2171|consensus 99.8 1.1E-16 2.5E-21 164.0 25.8 296 3-301 133-607 (1075)
8 PF11865 DUF3385: Domain of un 99.6 6.8E-15 1.5E-19 124.3 9.3 146 66-213 5-159 (160)
9 PRK09687 putative lyase; Provi 99.5 2.3E-12 4.9E-17 118.6 20.4 217 28-279 53-273 (280)
10 KOG0211|consensus 99.5 5.8E-13 1.3E-17 135.5 13.8 248 27-283 235-496 (759)
11 PRK09687 putative lyase; Provi 99.4 1.4E-11 2.9E-16 113.5 17.2 232 31-301 25-260 (280)
12 KOG2023|consensus 99.4 3.4E-12 7.3E-17 124.9 12.0 219 5-259 372-597 (885)
13 KOG0891|consensus 99.3 1.6E-11 3.4E-16 136.2 16.4 255 5-269 665-938 (2341)
14 PRK13800 putative oxidoreducta 99.3 2.8E-10 6.1E-15 120.3 22.0 220 28-283 651-894 (897)
15 KOG1241|consensus 99.3 7.4E-10 1.6E-14 110.2 21.5 285 7-299 345-722 (859)
16 KOG1241|consensus 99.3 1.3E-09 2.8E-14 108.5 22.6 261 4-268 380-728 (859)
17 PRK13800 putative oxidoreducta 99.1 3.7E-09 8E-14 112.0 19.8 222 30-285 622-864 (897)
18 KOG1242|consensus 99.1 6.5E-09 1.4E-13 101.9 19.6 274 15-297 202-532 (569)
19 KOG0166|consensus 99.1 1.9E-09 4.1E-14 104.9 15.1 284 2-297 77-402 (514)
20 COG5215 KAP95 Karyopherin (imp 99.1 2.1E-08 4.5E-13 97.4 21.0 290 4-301 382-724 (858)
21 COG5215 KAP95 Karyopherin (imp 99.0 1.3E-07 2.7E-12 92.1 23.4 260 5-268 425-725 (858)
22 KOG0166|consensus 98.9 1.1E-08 2.5E-13 99.6 13.3 244 7-254 129-394 (514)
23 PF12755 Vac14_Fab1_bd: Vacuol 98.9 2.9E-09 6.3E-14 82.3 7.0 87 4-91 2-88 (97)
24 KOG0915|consensus 98.9 1.9E-07 4E-12 99.1 22.2 227 23-253 1033-1344(1702)
25 PF01602 Adaptin_N: Adaptin N 98.9 1.3E-07 2.7E-12 94.2 19.0 255 5-283 96-401 (526)
26 KOG1240|consensus 98.9 4.4E-07 9.5E-12 94.5 21.7 256 5-286 440-723 (1431)
27 KOG0915|consensus 98.9 2.8E-07 6E-12 97.8 20.6 254 12-268 981-1321(1702)
28 KOG1242|consensus 98.8 5.2E-07 1.1E-11 88.7 21.0 236 29-270 174-460 (569)
29 PLN03200 cellulose synthase-in 98.8 2.1E-07 4.5E-12 103.3 19.4 275 5-286 463-763 (2102)
30 KOG1824|consensus 98.8 7.9E-07 1.7E-11 90.8 21.5 264 34-301 10-299 (1233)
31 PF01602 Adaptin_N: Adaptin N 98.8 7.6E-07 1.7E-11 88.6 20.8 247 26-284 264-523 (526)
32 PF12348 CLASP_N: CLASP N term 98.8 6.2E-07 1.3E-11 79.8 17.3 185 30-214 8-209 (228)
33 PF12348 CLASP_N: CLASP N term 98.7 3.1E-07 6.8E-12 81.7 13.2 186 4-190 23-226 (228)
34 COG5064 SRP1 Karyopherin (impo 98.7 1.9E-07 4.1E-12 86.0 10.9 281 1-290 81-401 (526)
35 KOG1824|consensus 98.6 2.5E-06 5.4E-11 87.2 19.2 227 3-236 834-1117(1233)
36 PF10508 Proteasom_PSMB: Prote 98.6 4.2E-06 9E-11 83.4 19.8 225 27-257 75-323 (503)
37 PLN03200 cellulose synthase-in 98.6 1.8E-06 4E-11 96.0 18.5 225 30-256 447-683 (2102)
38 PF11865 DUF3385: Domain of un 98.5 4.3E-07 9.4E-12 76.8 8.3 146 23-172 2-159 (160)
39 PF13513 HEAT_EZ: HEAT-like re 98.5 3.2E-08 6.9E-13 68.2 0.9 53 4-56 3-55 (55)
40 KOG1240|consensus 98.5 3.3E-06 7.2E-11 88.2 15.3 225 5-230 479-745 (1431)
41 PF10508 Proteasom_PSMB: Prote 98.5 2.1E-05 4.6E-10 78.4 20.8 245 5-253 94-366 (503)
42 COG1413 FOG: HEAT repeat [Ener 98.4 0.0001 2.2E-09 69.4 21.9 91 29-134 43-134 (335)
43 COG1413 FOG: HEAT repeat [Ener 98.4 3.4E-05 7.3E-10 72.6 17.8 170 24-250 69-239 (335)
44 COG5064 SRP1 Karyopherin (impo 98.3 4.7E-06 1E-10 77.0 11.1 252 29-286 157-491 (526)
45 KOG0211|consensus 98.3 3.7E-05 8E-10 79.1 18.8 276 5-286 254-542 (759)
46 KOG0212|consensus 98.3 1.3E-05 2.9E-10 78.1 14.6 237 5-270 60-298 (675)
47 PF13513 HEAT_EZ: HEAT-like re 98.3 4.7E-07 1E-11 62.3 3.1 55 43-98 1-55 (55)
48 PTZ00429 beta-adaptin; Provisi 98.3 0.00045 9.8E-09 71.6 25.1 236 5-258 49-290 (746)
49 PF13646 HEAT_2: HEAT repeats; 98.2 5.6E-06 1.2E-10 62.0 8.1 86 31-131 1-88 (88)
50 PTZ00429 beta-adaptin; Provisi 98.2 0.00028 6E-09 73.2 21.8 72 26-100 137-208 (746)
51 KOG2259|consensus 98.1 0.00015 3.2E-09 72.2 17.4 253 22-293 190-516 (823)
52 TIGR02270 conserved hypothetic 98.1 0.00045 9.7E-09 67.0 18.6 150 30-209 55-205 (410)
53 cd00020 ARM Armadillo/beta-cat 98.0 1.3E-05 2.9E-10 62.9 6.6 110 30-169 8-119 (120)
54 PF12460 MMS19_C: RNAPII trans 98.0 0.0011 2.3E-08 64.6 20.6 187 21-212 181-395 (415)
55 TIGR02270 conserved hypothetic 98.0 0.0015 3.2E-08 63.4 21.1 194 30-270 87-280 (410)
56 PF12717 Cnd1: non-SMC mitotic 98.0 0.00045 9.7E-09 59.3 15.2 112 42-193 1-112 (178)
57 KOG1820|consensus 97.9 0.0011 2.3E-08 69.1 19.6 201 30-267 254-457 (815)
58 PF02985 HEAT: HEAT repeat; I 97.9 2.1E-05 4.6E-10 47.5 4.1 30 30-59 1-30 (31)
59 PF12717 Cnd1: non-SMC mitotic 97.9 0.00072 1.6E-08 58.0 15.0 96 4-107 4-99 (178)
60 KOG4224|consensus 97.9 0.00056 1.2E-08 64.1 14.7 253 31-286 210-492 (550)
61 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00019 4.2E-09 55.4 9.8 87 45-161 2-88 (97)
62 COG5116 RPN2 26S proteasome re 97.8 0.00017 3.7E-09 70.8 11.4 152 34-194 521-674 (926)
63 KOG4653|consensus 97.8 0.0015 3.2E-08 67.0 18.4 220 31-260 729-971 (982)
64 PF12719 Cnd3: Nuclear condens 97.8 0.013 2.8E-07 54.5 22.4 179 11-194 6-209 (298)
65 KOG2259|consensus 97.7 0.0018 3.9E-08 64.7 17.0 240 2-256 193-514 (823)
66 PF13646 HEAT_2: HEAT repeats; 97.7 0.00024 5.3E-09 53.0 8.8 85 74-166 2-88 (88)
67 KOG2956|consensus 97.7 0.0016 3.6E-08 62.7 15.8 168 23-191 323-499 (516)
68 KOG2956|consensus 97.7 0.0052 1.1E-07 59.4 19.1 193 35-267 292-491 (516)
69 KOG0212|consensus 97.7 0.0043 9.4E-08 61.1 18.8 208 4-214 183-409 (675)
70 KOG4653|consensus 97.7 0.0016 3.5E-08 66.7 16.1 182 73-258 729-923 (982)
71 KOG2062|consensus 97.6 0.0008 1.7E-08 67.9 13.0 154 32-194 522-677 (929)
72 KOG1059|consensus 97.6 0.0038 8.2E-08 63.0 17.6 207 31-256 183-404 (877)
73 PF05004 IFRD: Interferon-rela 97.6 0.027 5.9E-07 52.7 21.9 183 31-214 45-260 (309)
74 cd00020 ARM Armadillo/beta-cat 97.5 0.00055 1.2E-08 53.5 8.4 111 141-252 7-119 (120)
75 KOG1248|consensus 97.5 0.069 1.5E-06 56.9 24.8 258 7-299 632-910 (1176)
76 PF14500 MMS19_N: Dos2-interac 97.4 0.051 1.1E-06 49.6 20.9 219 33-268 3-252 (262)
77 PF10274 ParcG: Parkin co-regu 97.4 0.0026 5.6E-08 54.6 11.0 119 141-261 38-172 (183)
78 PF05004 IFRD: Interferon-rela 97.4 0.018 3.9E-07 53.9 17.7 143 4-174 102-261 (309)
79 KOG2933|consensus 97.3 0.0013 2.8E-08 60.4 8.7 113 4-117 104-216 (334)
80 PF04826 Arm_2: Armadillo-like 97.3 0.014 3E-07 53.1 15.4 205 29-273 12-232 (254)
81 KOG1061|consensus 97.1 0.064 1.4E-06 54.8 19.5 84 195-284 437-527 (734)
82 PF05918 API5: Apoptosis inhib 97.1 0.12 2.7E-06 51.8 21.4 229 28-269 58-316 (556)
83 KOG4413|consensus 97.1 0.087 1.9E-06 49.2 18.6 230 27-259 80-340 (524)
84 KOG4224|consensus 97.1 0.0092 2E-07 56.2 12.3 179 28-213 250-448 (550)
85 COG5096 Vesicle coat complex, 97.1 0.19 4.1E-06 52.1 22.7 167 7-189 39-211 (757)
86 KOG1992|consensus 97.1 0.083 1.8E-06 54.4 19.6 261 5-268 379-686 (960)
87 PF04826 Arm_2: Armadillo-like 97.0 0.027 5.8E-07 51.2 13.9 142 30-175 55-210 (254)
88 PF12460 MMS19_C: RNAPII trans 97.0 0.16 3.6E-06 49.4 20.4 194 68-264 186-404 (415)
89 COG5240 SEC21 Vesicle coat com 96.9 0.06 1.3E-06 53.5 16.3 252 26-297 261-562 (898)
90 KOG1967|consensus 96.9 0.0084 1.8E-07 62.1 10.8 126 3-129 882-1018(1030)
91 KOG1991|consensus 96.8 0.38 8.2E-06 50.7 22.1 201 2-206 432-666 (1010)
92 PF08167 RIX1: rRNA processing 96.8 0.036 7.9E-07 47.0 12.6 137 24-189 20-162 (165)
93 KOG2032|consensus 96.8 0.23 5E-06 48.6 19.2 143 70-242 257-405 (533)
94 KOG2137|consensus 96.8 0.034 7.4E-07 56.5 14.1 156 106-268 349-513 (700)
95 KOG1077|consensus 96.8 0.35 7.6E-06 49.3 20.8 253 3-268 123-413 (938)
96 KOG1820|consensus 96.8 0.13 2.8E-06 54.0 18.6 175 4-214 269-446 (815)
97 KOG1243|consensus 96.7 0.0034 7.5E-08 63.2 6.7 186 23-213 324-517 (690)
98 COG5218 YCG1 Chromosome conden 96.7 0.069 1.5E-06 53.2 15.0 171 28-208 90-263 (885)
99 PF10274 ParcG: Parkin co-regu 96.7 0.019 4.1E-07 49.3 10.0 135 63-228 33-177 (183)
100 PF10363 DUF2435: Protein of u 96.7 0.027 5.9E-07 43.0 9.9 85 30-118 4-89 (92)
101 PF13251 DUF4042: Domain of un 96.6 0.03 6.6E-07 48.2 11.2 101 4-105 2-135 (182)
102 KOG1062|consensus 96.6 0.66 1.4E-05 47.9 21.9 90 185-281 353-444 (866)
103 KOG0567|consensus 96.6 0.12 2.6E-06 46.8 14.9 89 105-207 186-276 (289)
104 KOG2032|consensus 96.6 0.82 1.8E-05 44.9 24.4 148 9-157 235-403 (533)
105 PF13251 DUF4042: Domain of un 96.6 0.039 8.4E-07 47.6 11.5 156 44-213 1-176 (182)
106 COG5240 SEC21 Vesicle coat com 96.6 0.082 1.8E-06 52.6 14.8 196 4-209 319-553 (898)
107 KOG2022|consensus 96.5 1.3 2.8E-05 46.4 25.2 243 7-255 528-824 (982)
108 KOG2025|consensus 96.5 0.47 1E-05 48.5 19.7 206 30-257 86-299 (892)
109 KOG1943|consensus 96.5 0.51 1.1E-05 50.2 20.6 186 22-214 334-576 (1133)
110 COG5096 Vesicle coat complex, 96.5 0.064 1.4E-06 55.5 14.0 163 80-254 28-196 (757)
111 KOG1993|consensus 96.5 0.25 5.5E-06 50.9 17.8 188 46-268 461-661 (978)
112 KOG1943|consensus 96.4 1 2.2E-05 48.0 22.6 244 4-255 396-707 (1133)
113 PF04118 Dopey_N: Dopey, N-ter 96.4 0.045 9.9E-07 51.1 11.8 115 155-270 69-184 (307)
114 PF02985 HEAT: HEAT repeat; I 96.4 0.0076 1.7E-07 36.1 4.3 30 183-212 1-30 (31)
115 KOG1060|consensus 96.3 0.22 4.8E-06 51.2 16.6 175 24-211 282-458 (968)
116 KOG1078|consensus 96.3 0.65 1.4E-05 47.9 19.9 73 24-101 240-312 (865)
117 KOG1060|consensus 96.3 0.19 4.1E-06 51.7 16.1 164 76-252 40-208 (968)
118 KOG1248|consensus 96.3 0.52 1.1E-05 50.6 19.5 222 8-265 674-910 (1176)
119 KOG0168|consensus 96.3 0.51 1.1E-05 49.1 18.7 182 30-214 168-367 (1051)
120 KOG1059|consensus 96.2 0.3 6.5E-06 49.8 16.6 230 22-270 136-379 (877)
121 KOG1993|consensus 96.2 0.71 1.5E-05 47.7 19.3 205 34-268 531-742 (978)
122 KOG1243|consensus 96.1 0.014 2.9E-07 59.1 6.6 170 2-174 341-519 (690)
123 KOG1062|consensus 96.1 2.2 4.7E-05 44.3 22.2 222 41-268 306-557 (866)
124 KOG1949|consensus 96.0 0.28 6.1E-06 50.0 15.4 154 23-209 163-329 (1005)
125 KOG0414|consensus 96.0 0.22 4.9E-06 53.2 15.4 177 26-214 916-1102(1251)
126 KOG1078|consensus 96.0 0.26 5.5E-06 50.7 15.0 147 10-171 267-422 (865)
127 KOG1967|consensus 95.9 0.12 2.6E-06 53.9 12.5 142 71-214 815-985 (1030)
128 KOG1991|consensus 95.9 1.4 3E-05 46.7 19.9 186 4-192 388-599 (1010)
129 PF01347 Vitellogenin_N: Lipop 95.8 0.24 5.2E-06 50.6 14.6 140 23-167 425-586 (618)
130 PF08767 CRM1_C: CRM1 C termin 95.8 1.2 2.7E-05 41.8 18.2 142 146-287 76-243 (319)
131 KOG0891|consensus 95.8 0.03 6.5E-07 64.3 8.3 120 10-132 629-760 (2341)
132 PF10521 DUF2454: Protein of u 95.7 0.14 3.1E-06 47.2 11.4 150 22-195 112-278 (282)
133 smart00638 LPD_N Lipoprotein N 95.7 0.59 1.3E-05 47.4 16.8 173 24-248 388-573 (574)
134 KOG1058|consensus 95.7 0.66 1.4E-05 47.7 16.4 229 26-269 131-406 (948)
135 PF12719 Cnd3: Nuclear condens 95.6 0.85 1.8E-05 42.3 16.3 108 4-115 43-161 (298)
136 PF00514 Arm: Armadillo/beta-c 95.4 0.029 6.3E-07 35.7 4.1 30 29-58 12-41 (41)
137 KOG0392|consensus 95.4 0.26 5.6E-06 53.1 12.8 170 46-216 750-930 (1549)
138 PF10363 DUF2435: Protein of u 95.3 0.13 2.8E-06 39.3 7.9 81 73-154 5-90 (92)
139 COG5116 RPN2 26S proteasome re 95.2 0.064 1.4E-06 53.3 7.5 102 29-139 551-654 (926)
140 KOG1020|consensus 95.2 0.67 1.5E-05 50.9 15.3 143 23-169 810-959 (1692)
141 KOG1061|consensus 95.1 0.83 1.8E-05 47.0 15.2 157 77-239 92-254 (734)
142 PF03378 CAS_CSE1: CAS/CSE pro 95.1 3.7 8E-05 40.4 21.0 240 21-268 18-290 (435)
143 KOG2160|consensus 94.9 0.86 1.9E-05 42.9 13.8 99 4-104 99-200 (342)
144 PF05804 KAP: Kinesin-associat 94.8 2 4.2E-05 44.8 17.3 146 125-288 507-671 (708)
145 KOG0567|consensus 94.6 0.33 7.1E-06 44.0 9.7 116 32-166 157-276 (289)
146 PF05918 API5: Apoptosis inhib 94.6 2.5 5.3E-05 42.7 16.8 225 34-269 28-274 (556)
147 PF01347 Vitellogenin_N: Lipop 94.4 3 6.4E-05 42.6 17.8 163 67-249 430-618 (618)
148 KOG0414|consensus 94.3 0.71 1.5E-05 49.6 12.6 121 28-153 959-1083(1251)
149 KOG2025|consensus 94.2 2 4.3E-05 44.1 15.1 90 2-97 96-190 (892)
150 KOG2062|consensus 94.1 2.7 5.9E-05 43.4 15.9 97 141-252 554-652 (929)
151 KOG2137|consensus 93.8 6 0.00013 40.7 17.9 172 82-257 361-543 (700)
152 KOG1020|consensus 93.6 1.3 2.7E-05 49.0 13.3 110 67-211 812-921 (1692)
153 KOG4413|consensus 93.6 0.22 4.9E-06 46.5 6.8 94 159-254 61-158 (524)
154 PF12765 Cohesin_HEAT: HEAT re 93.5 0.091 2E-06 33.9 3.0 42 10-53 1-42 (42)
155 KOG1077|consensus 93.4 11 0.00024 39.0 19.6 102 34-139 334-437 (938)
156 KOG1293|consensus 93.3 4.4 9.5E-05 41.2 15.8 108 141-248 419-528 (678)
157 KOG4524|consensus 93.1 8.3 0.00018 41.0 17.9 86 182-269 803-895 (1014)
158 cd08050 TAF6 TATA Binding Prot 93.1 2.2 4.7E-05 40.6 13.0 88 162-251 234-335 (343)
159 KOG0413|consensus 92.6 0.46 9.9E-06 50.1 8.0 131 132-270 954-1090(1529)
160 KOG1822|consensus 92.5 24 0.00051 40.5 21.5 100 4-105 892-993 (2067)
161 PF08167 RIX1: rRNA processing 92.5 4.7 0.0001 34.0 13.0 98 68-193 22-127 (165)
162 cd08050 TAF6 TATA Binding Prot 92.5 0.67 1.5E-05 44.0 8.6 77 22-99 251-339 (343)
163 KOG2274|consensus 92.5 9.1 0.0002 40.5 16.9 208 27-268 447-664 (1005)
164 KOG1525|consensus 92.2 3.1 6.7E-05 45.9 14.0 168 29-199 259-441 (1266)
165 PF12530 DUF3730: Protein of u 92.1 8.5 0.00018 34.4 19.3 199 31-237 2-216 (234)
166 PF08506 Cse1: Cse1; InterPro 92.0 2 4.3E-05 41.3 11.3 126 2-130 225-370 (370)
167 KOG0392|consensus 91.9 7.2 0.00016 42.7 15.8 228 27-257 75-329 (1549)
168 PF11698 V-ATPase_H_C: V-ATPas 91.6 0.33 7.2E-06 38.8 4.6 71 29-99 43-114 (119)
169 KOG2274|consensus 91.4 22 0.00047 37.8 21.6 258 9-300 509-792 (1005)
170 PF08064 UME: UME (NUC010) dom 91.0 2.3 5E-05 33.2 8.8 87 179-268 8-98 (107)
171 smart00185 ARM Armadillo/beta- 90.7 0.38 8.2E-06 29.8 3.4 29 30-58 13-41 (41)
172 KOG1949|consensus 90.6 20 0.00043 37.2 16.8 146 76-254 179-332 (1005)
173 KOG2933|consensus 90.6 4.4 9.6E-05 37.7 11.3 101 175-276 122-222 (334)
174 PF12765 Cohesin_HEAT: HEAT re 90.6 0.4 8.7E-06 30.9 3.4 41 51-94 1-41 (42)
175 PF07571 DUF1546: Protein of u 90.5 1.9 4.2E-05 32.7 7.7 73 39-116 16-90 (92)
176 PF14664 RICTOR_N: Rapamycin-i 90.1 6.8 0.00015 37.7 12.9 164 3-170 83-269 (371)
177 PF08064 UME: UME (NUC010) dom 90.1 1.8 3.8E-05 33.9 7.4 80 23-107 5-90 (107)
178 PF00514 Arm: Armadillo/beta-c 90.1 0.56 1.2E-05 29.6 3.8 29 72-100 13-41 (41)
179 PLN03076 ARF guanine nucleotid 89.7 46 0.00099 38.6 21.6 247 4-257 1199-1493(1780)
180 KOG4535|consensus 89.4 3.3 7.2E-05 40.8 10.0 182 28-209 389-601 (728)
181 PF08161 NUC173: NUC173 domain 89.4 14 0.0003 32.3 15.3 75 36-111 7-81 (198)
182 KOG0413|consensus 89.4 35 0.00075 36.8 18.8 73 27-104 1004-1077(1529)
183 PF10521 DUF2454: Protein of u 89.4 8.5 0.00018 35.4 12.6 129 141-269 119-271 (282)
184 PF05804 KAP: Kinesin-associat 89.2 11 0.00024 39.4 14.3 71 141-213 576-651 (708)
185 PF08506 Cse1: Cse1; InterPro 89.0 14 0.00029 35.6 14.0 196 7-206 115-370 (370)
186 KOG4535|consensus 88.5 0.84 1.8E-05 44.8 5.3 100 6-105 502-608 (728)
187 KOG2021|consensus 88.2 14 0.00029 38.6 13.7 60 42-106 206-267 (980)
188 smart00802 UME Domain in UVSB 87.9 2.8 6.1E-05 32.9 7.1 82 23-107 5-90 (107)
189 KOG3961|consensus 87.6 2 4.4E-05 37.9 6.6 76 142-217 115-190 (262)
190 PF14668 RICTOR_V: Rapamycin-i 87.5 1.1 2.4E-05 32.6 4.3 60 45-107 3-65 (73)
191 KOG1822|consensus 87.2 63 0.0014 37.3 19.1 142 51-192 854-1010(2067)
192 COG5656 SXM1 Importin, protein 87.0 43 0.00093 35.1 21.4 251 3-259 431-717 (970)
193 smart00802 UME Domain in UVSB 86.9 2.7 5.9E-05 32.9 6.5 66 4-75 31-96 (107)
194 COG5098 Chromosome condensatio 86.8 11 0.00024 38.9 12.1 103 109-212 302-416 (1128)
195 PF14664 RICTOR_N: Rapamycin-i 86.2 33 0.00072 33.0 19.3 64 37-105 75-141 (371)
196 KOG0946|consensus 86.1 44 0.00095 35.2 16.0 122 3-131 38-191 (970)
197 COG5095 TAF6 Transcription ini 85.7 20 0.00042 33.5 12.1 39 175-213 270-318 (450)
198 KOG2149|consensus 85.5 12 0.00025 36.1 11.1 75 31-106 60-134 (393)
199 cd03568 VHS_STAM VHS domain fa 84.9 21 0.00045 29.5 11.1 93 165-258 21-115 (144)
200 PF12231 Rif1_N: Rap1-interact 84.8 38 0.00083 32.5 18.5 40 220-259 270-309 (372)
201 KOG2549|consensus 84.7 5.1 0.00011 40.0 8.5 78 22-100 281-370 (576)
202 PF08767 CRM1_C: CRM1 C termin 84.7 35 0.00076 32.0 17.2 151 45-195 43-227 (319)
203 KOG0168|consensus 84.7 59 0.0013 34.6 18.7 187 76-268 172-381 (1051)
204 KOG1517|consensus 84.6 22 0.00049 38.4 13.4 67 29-101 599-672 (1387)
205 PF13001 Ecm29: Proteasome sta 83.3 11 0.00023 37.9 10.4 126 9-138 301-446 (501)
206 COG5218 YCG1 Chromosome conden 83.3 23 0.00051 36.0 12.4 126 152-281 102-245 (885)
207 COG5098 Chromosome condensatio 83.3 9.6 0.00021 39.4 9.9 92 5-99 316-414 (1128)
208 smart00638 LPD_N Lipoprotein N 83.1 56 0.0012 33.1 23.1 173 86-272 341-527 (574)
209 PF03130 HEAT_PBS: PBS lyase H 83.0 1.3 2.8E-05 25.4 2.3 26 87-116 1-26 (27)
210 PF00790 VHS: VHS domain; Int 82.2 20 0.00043 29.2 10.0 99 14-116 28-137 (140)
211 PF03224 V-ATPase_H_N: V-ATPas 81.9 44 0.00095 31.0 18.3 176 25-205 55-264 (312)
212 PF08161 NUC173: NUC173 domain 80.6 5.2 0.00011 34.9 6.3 108 157-269 16-123 (198)
213 PF10193 Telomere_reg-2: Telom 80.5 26 0.00057 27.6 9.8 99 26-131 4-111 (114)
214 KOG2149|consensus 80.2 48 0.001 32.0 13.0 113 73-214 60-173 (393)
215 cd03568 VHS_STAM VHS domain fa 79.7 17 0.00037 30.0 8.7 75 140-214 36-113 (144)
216 PF08623 TIP120: TATA-binding 79.5 14 0.00031 31.4 8.4 82 22-108 2-101 (169)
217 KOG2160|consensus 79.4 58 0.0013 30.9 16.0 140 42-214 96-243 (342)
218 PF11919 DUF3437: Domain of un 79.1 3.6 7.8E-05 31.2 4.2 55 3-58 4-58 (90)
219 KOG1992|consensus 78.9 94 0.002 33.0 16.2 85 151-235 603-692 (960)
220 PF12397 U3snoRNP10: U3 small 78.6 22 0.00047 28.0 8.9 87 178-268 2-90 (121)
221 PF05536 Neurochondrin: Neuroc 78.5 81 0.0017 32.0 17.4 185 100-287 48-260 (543)
222 PF03224 V-ATPase_H_N: V-ATPas 77.1 63 0.0014 30.0 17.2 163 6-170 75-269 (312)
223 PF12783 Sec7_N: Guanine nucle 76.9 26 0.00056 29.3 9.4 102 3-107 37-151 (168)
224 PF00790 VHS: VHS domain; Int 76.8 24 0.00053 28.7 8.9 85 141-225 42-132 (140)
225 PF08389 Xpo1: Exportin 1-like 76.4 15 0.00032 29.4 7.6 139 43-205 2-147 (148)
226 cd03569 VHS_Hrs_Vps27p VHS dom 76.0 27 0.00059 28.7 8.9 75 141-215 41-118 (142)
227 KOG2022|consensus 75.8 1.2E+02 0.0026 32.5 17.8 138 43-214 481-622 (982)
228 PF04118 Dopey_N: Dopey, N-ter 75.4 72 0.0016 29.9 13.0 73 142-214 98-170 (307)
229 cd03561 VHS VHS domain family; 75.3 26 0.00056 28.3 8.6 75 140-214 36-115 (133)
230 PF14225 MOR2-PAG1_C: Cell mor 75.2 66 0.0014 29.4 16.8 180 25-212 60-255 (262)
231 smart00288 VHS Domain present 75.1 42 0.00092 27.1 10.8 88 26-116 34-130 (133)
232 KOG2549|consensus 74.7 71 0.0015 32.2 12.7 104 75-213 211-329 (576)
233 smart00288 VHS Domain present 74.5 31 0.00067 27.9 8.8 75 140-214 36-114 (133)
234 PF03378 CAS_CSE1: CAS/CSE pro 74.1 94 0.002 30.6 18.3 192 69-264 24-240 (435)
235 KOG1837|consensus 73.4 21 0.00046 40.0 9.5 75 27-104 1539-1615(1621)
236 PF12333 Ipi1_N: Rix1 complex 73.4 8.4 0.00018 29.8 5.0 62 22-83 4-65 (102)
237 PF09324 DUF1981: Domain of un 73.3 13 0.00028 27.8 5.8 65 30-95 18-83 (86)
238 PLN03076 ARF guanine nucleotid 73.2 1.1E+02 0.0023 35.8 15.2 41 34-74 1352-1392(1780)
239 PF09324 DUF1981: Domain of un 73.1 17 0.00036 27.2 6.4 67 141-207 17-84 (86)
240 COG5032 TEL1 Phosphatidylinosi 73.1 35 0.00075 40.4 11.8 182 7-196 457-651 (2105)
241 PF13001 Ecm29: Proteasome sta 73.0 73 0.0016 31.9 12.9 62 194-257 386-447 (501)
242 smart00185 ARM Armadillo/beta- 72.8 5.4 0.00012 24.4 3.2 26 74-99 15-40 (41)
243 PF08389 Xpo1: Exportin 1-like 72.5 34 0.00073 27.3 8.8 32 86-117 3-37 (148)
244 smart00567 EZ_HEAT E-Z type HE 72.3 5.6 0.00012 23.0 2.9 28 86-117 2-29 (30)
245 COG5656 SXM1 Importin, protein 72.0 1.4E+02 0.003 31.6 19.6 145 41-189 428-587 (970)
246 PF12830 Nipped-B_C: Sister ch 71.4 65 0.0014 27.6 14.7 68 31-103 10-77 (187)
247 cd03561 VHS VHS domain family; 70.7 54 0.0012 26.4 10.2 78 181-258 36-117 (133)
248 PF08713 DNA_alkylation: DNA a 70.5 57 0.0012 28.0 10.3 28 28-55 50-77 (213)
249 PF14500 MMS19_N: Dos2-interac 70.4 86 0.0019 28.6 17.6 211 4-233 15-255 (262)
250 PF14228 MOR2-PAG1_mid: Cell m 70.1 1.4E+02 0.003 33.2 14.8 32 26-57 193-224 (1120)
251 cd06561 AlkD_like A new struct 69.3 62 0.0013 27.4 10.1 108 30-148 72-182 (197)
252 PF07571 DUF1546: Protein of u 69.3 11 0.00024 28.5 4.8 53 83-135 18-78 (92)
253 KOG1517|consensus 69.2 1.8E+02 0.004 31.9 17.5 204 44-252 485-731 (1387)
254 cd03569 VHS_Hrs_Vps27p VHS dom 68.9 48 0.001 27.2 8.9 75 26-103 38-117 (142)
255 KOG2021|consensus 68.9 1.6E+02 0.0035 31.1 16.1 28 161-191 758-785 (980)
256 KOG1293|consensus 68.4 1.5E+02 0.0033 30.6 18.4 73 25-99 415-489 (678)
257 PF11698 V-ATPase_H_C: V-ATPas 68.2 21 0.00045 28.6 6.2 69 141-210 43-114 (119)
258 PF12397 U3snoRNP10: U3 small 68.1 49 0.0011 26.0 8.5 73 26-102 3-76 (121)
259 KOG0946|consensus 68.0 81 0.0018 33.3 11.8 34 26-59 19-53 (970)
260 PF08713 DNA_alkylation: DNA a 67.8 18 0.00038 31.3 6.5 109 30-148 86-196 (213)
261 PF08569 Mo25: Mo25-like; Int 67.2 32 0.0007 32.6 8.4 88 23-113 203-297 (335)
262 KOG1058|consensus 66.5 1.8E+02 0.0039 30.8 20.1 42 5-49 151-192 (948)
263 cd00197 VHS_ENTH_ANTH VHS, ENT 66.1 60 0.0013 25.2 9.4 54 10-64 19-72 (115)
264 KOG2005|consensus 65.0 64 0.0014 33.5 10.2 69 146-214 53-128 (878)
265 KOG4524|consensus 64.8 35 0.00075 36.6 8.6 54 141-194 847-901 (1014)
266 cd00256 VATPase_H VATPase_H, r 63.8 10 0.00022 37.3 4.4 71 29-99 353-424 (429)
267 KOG3961|consensus 63.4 25 0.00055 31.2 6.3 55 7-61 133-187 (262)
268 COG5537 IRR1 Cohesin [Cell div 62.0 84 0.0018 32.2 10.3 115 150-270 323-447 (740)
269 PF12830 Nipped-B_C: Sister ch 61.7 33 0.00072 29.4 6.9 23 78-100 15-37 (187)
270 COG5234 CIN1 Beta-tubulin fold 61.4 73 0.0016 33.3 9.9 213 27-251 244-489 (993)
271 PF12074 DUF3554: Domain of un 58.6 1.6E+02 0.0035 27.6 20.2 87 26-116 19-113 (339)
272 cd03567 VHS_GGA VHS domain fam 58.3 1E+02 0.0022 25.2 9.7 75 182-256 38-119 (139)
273 KOG0889|consensus 57.8 4.7E+02 0.01 32.8 16.8 229 5-241 75-353 (3550)
274 KOG2759|consensus 57.7 1.9E+02 0.0042 28.2 18.2 72 33-105 118-190 (442)
275 KOG1848|consensus 55.7 3.6E+02 0.0077 30.7 16.4 217 37-255 850-1134(1610)
276 cd03567 VHS_GGA VHS domain fam 55.6 1.1E+02 0.0025 24.9 11.0 74 27-103 36-119 (139)
277 cd06561 AlkD_like A new struct 55.5 70 0.0015 27.0 7.9 74 110-183 109-183 (197)
278 PF11701 UNC45-central: Myosin 55.1 99 0.0022 25.6 8.5 123 83-207 17-155 (157)
279 cd00256 VATPase_H VATPase_H, r 54.1 2.3E+02 0.0049 27.9 19.9 67 32-99 104-172 (429)
280 PF01603 B56: Protein phosphat 54.1 1.1E+02 0.0025 29.6 10.0 155 106-268 133-299 (409)
281 cd03572 ENTH_epsin_related ENT 54.1 54 0.0012 26.3 6.4 51 11-62 21-71 (122)
282 KOG1525|consensus 51.9 4E+02 0.0087 30.1 20.0 70 140-209 258-327 (1266)
283 PF12243 CTK3: CTD kinase subu 51.7 1.3E+02 0.0029 24.6 9.4 69 141-209 40-117 (139)
284 cd03562 CID CID (CTD-Interacti 51.6 74 0.0016 24.6 6.8 61 146-206 42-103 (114)
285 PF08623 TIP120: TATA-binding 51.4 57 0.0012 27.8 6.4 57 5-64 44-100 (169)
286 COG5221 DOP1 Dopey and related 50.9 1.4E+02 0.003 32.9 10.2 117 155-272 77-195 (1618)
287 COG5231 VMA13 Vacuolar H+-ATPa 50.8 18 0.00039 34.1 3.5 70 29-98 356-426 (432)
288 COG5095 TAF6 Transcription ini 50.1 64 0.0014 30.3 6.9 79 22-101 270-360 (450)
289 KOG2213|consensus 50.0 2.5E+02 0.0055 27.3 12.9 119 124-259 42-168 (460)
290 PF12074 DUF3554: Domain of un 49.7 2.2E+02 0.0048 26.6 16.2 59 24-82 56-114 (339)
291 PF10350 DUF2428: Putative dea 49.5 2E+02 0.0043 25.9 12.9 139 43-181 61-239 (255)
292 KOG2973|consensus 48.6 75 0.0016 29.9 7.1 66 146-213 8-73 (353)
293 KOG0803|consensus 48.4 4.6E+02 0.0099 29.8 15.7 71 29-102 41-114 (1312)
294 KOG1837|consensus 48.3 2E+02 0.0043 32.9 11.2 80 69-179 1539-1620(1621)
295 KOG2759|consensus 47.8 28 0.00061 33.8 4.4 71 29-99 366-437 (442)
296 KOG2973|consensus 47.0 1.3E+02 0.0027 28.4 8.3 66 34-102 8-73 (353)
297 PF11919 DUF3437: Domain of un 46.6 40 0.00087 25.5 4.3 53 44-99 4-57 (90)
298 PF14668 RICTOR_V: Rapamycin-i 46.5 24 0.00052 25.6 3.0 54 4-58 3-58 (73)
299 cd03572 ENTH_epsin_related ENT 46.0 91 0.002 25.0 6.5 69 141-209 38-117 (122)
300 PF04388 Hamartin: Hamartin pr 45.0 83 0.0018 32.8 7.7 74 84-191 81-161 (668)
301 cd03565 VHS_Tom1 VHS domain fa 44.6 1.7E+02 0.0038 23.8 8.6 74 141-214 38-118 (141)
302 KOG3678|consensus 44.6 2.1E+02 0.0046 28.6 9.8 59 155-213 236-295 (832)
303 PF12231 Rif1_N: Rap1-interact 44.5 2.9E+02 0.0063 26.4 22.5 113 152-268 145-257 (372)
304 KOG0612|consensus 43.1 12 0.00026 40.8 1.3 88 196-299 175-283 (1317)
305 PF14868 DUF4487: Domain of un 42.8 97 0.0021 31.6 7.6 60 43-103 494-555 (559)
306 KOG1848|consensus 42.3 5.7E+02 0.012 29.2 14.9 73 32-104 1000-1086(1610)
307 KOG4190|consensus 41.9 1.5E+02 0.0033 30.0 8.5 105 159-268 414-543 (1034)
308 KOG3723|consensus 41.4 1.5E+02 0.0033 30.3 8.3 128 155-301 55-204 (851)
309 cd00197 VHS_ENTH_ANTH VHS, ENT 40.4 1.7E+02 0.0037 22.5 9.5 75 178-252 33-114 (115)
310 PF04078 Rcd1: Cell differenti 39.7 3E+02 0.0065 25.2 14.4 126 84-209 8-166 (262)
311 KOG2199|consensus 37.7 3.5E+02 0.0075 26.4 9.8 85 141-225 45-132 (462)
312 KOG1932|consensus 36.8 6.3E+02 0.014 28.1 17.2 100 32-131 677-799 (1180)
313 PF05536 Neurochondrin: Neuroc 36.2 4.8E+02 0.01 26.5 21.9 222 29-258 5-266 (543)
314 PHA02855 anti-apoptotic membra 36.0 1.4E+02 0.0031 25.2 6.3 38 25-62 72-110 (180)
315 PF12726 SEN1_N: SEN1 N termin 35.7 5.4E+02 0.012 27.0 13.1 105 161-266 98-209 (727)
316 COG5330 Uncharacterized protei 35.4 68 0.0015 30.7 4.9 30 27-56 45-74 (364)
317 PF11701 UNC45-central: Myosin 35.0 55 0.0012 27.2 3.9 65 28-96 85-155 (157)
318 COG5330 Uncharacterized protei 34.9 1.7E+02 0.0036 28.1 7.4 68 27-97 5-73 (364)
319 KOG2153|consensus 34.0 5.6E+02 0.012 26.7 13.7 39 66-104 205-243 (704)
320 PF12612 TFCD_C: Tubulin foldi 32.9 3.1E+02 0.0068 23.4 9.8 34 27-60 5-38 (193)
321 PF08146 BP28CT: BP28CT (NUC21 32.8 43 0.00094 27.8 2.9 64 238-301 35-109 (153)
322 COG5537 IRR1 Cohesin [Cell div 31.6 5.6E+02 0.012 26.6 10.6 102 27-131 272-382 (740)
323 COG4912 Predicted DNA alkylati 31.5 3.8E+02 0.0082 23.9 11.3 73 24-102 113-185 (222)
324 KOG1566|consensus 31.5 1.4E+02 0.0031 28.1 6.1 78 34-114 217-301 (342)
325 KOG2199|consensus 31.4 3.2E+02 0.007 26.6 8.6 88 27-117 43-138 (462)
326 KOG1789|consensus 30.8 4.3E+02 0.0094 29.6 10.1 120 31-153 1773-1910(2235)
327 PF11099 M11L: Apoptosis regul 30.6 1.5E+02 0.0032 25.2 5.6 37 26-62 61-98 (167)
328 KOG2188|consensus 30.1 6.4E+02 0.014 26.1 18.2 17 271-287 561-577 (650)
329 COG5657 CSE1 CAS/CSE protein i 29.4 2.6E+02 0.0056 30.1 8.2 145 36-190 11-174 (947)
330 cd00872 PI3Ka_I Phosphoinositi 28.5 3E+02 0.0065 23.4 7.3 74 181-268 38-111 (171)
331 PF12783 Sec7_N: Guanine nucle 28.4 3.4E+02 0.0074 22.4 12.2 71 141-211 73-146 (168)
332 PF12054 DUF3535: Domain of un 28.1 5.9E+02 0.013 25.1 20.3 202 43-254 101-343 (441)
333 PF06685 DUF1186: Protein of u 28.1 4.6E+02 0.0099 23.8 17.9 116 141-268 73-194 (249)
334 PF07539 DRIM: Down-regulated 27.8 2.8E+02 0.0061 22.7 6.8 30 27-56 15-44 (141)
335 PF08568 Kinetochor_Ybp2: Unch 27.7 6.9E+02 0.015 25.7 13.8 75 121-195 81-178 (633)
336 KOG3613|consensus 27.5 3.8E+02 0.0083 31.1 9.5 164 23-214 1391-1562(1749)
337 cd07064 AlkD_like_1 A new stru 27.1 4.2E+02 0.009 23.0 9.6 95 31-134 82-178 (208)
338 KOG0889|consensus 26.7 4.7E+02 0.01 32.8 10.4 155 104-258 982-1160(3550)
339 cd03565 VHS_Tom1 VHS domain fa 25.1 3.8E+02 0.0082 21.8 10.8 79 181-259 37-121 (141)
340 KOG2005|consensus 24.9 8.3E+02 0.018 25.7 10.7 36 26-61 484-521 (878)
341 PF14631 FancD2: Fanconi anaem 24.9 6.7E+02 0.015 28.9 11.1 93 165-262 418-510 (1426)
342 PF10304 DUF2411: Domain of un 24.8 1.8E+02 0.0038 17.9 4.3 29 181-209 4-33 (36)
343 PHA02855 anti-apoptotic membra 24.3 3E+02 0.0064 23.4 6.2 29 76-104 81-110 (180)
344 PF08664 YcbB: YcbB domain; I 23.8 2.4E+02 0.0053 23.0 5.6 51 24-74 39-103 (134)
345 PF14911 MMS22L_C: S-phase gen 23.6 6.7E+02 0.014 24.2 9.4 105 142-251 257-372 (373)
346 COG5110 RPN1 26S proteasome re 23.6 8.2E+02 0.018 25.2 14.4 206 67-287 446-669 (881)
347 PF07560 DUF1539: Domain of Un 23.5 3.1E+02 0.0067 22.1 6.1 44 28-76 66-111 (126)
348 PF04388 Hamartin: Hamartin pr 22.3 4.7E+02 0.01 27.3 8.8 75 24-100 65-140 (668)
349 KOG1048|consensus 22.2 1.9E+02 0.004 30.4 5.7 67 23-90 267-339 (717)
350 PF01603 B56: Protein phosphat 21.9 7.4E+02 0.016 24.0 17.8 126 158-287 235-369 (409)
351 PF04078 Rcd1: Cell differenti 21.8 6.2E+02 0.014 23.1 15.5 36 85-120 110-153 (262)
352 COG5101 CRM1 Importin beta-rel 21.6 9.6E+02 0.021 25.2 17.8 78 26-103 567-651 (1053)
353 PF14868 DUF4487: Domain of un 21.4 1.8E+02 0.0039 29.7 5.4 34 28-61 522-555 (559)
354 cd05134 RasGAP_RASA3 RASA3 (or 21.1 6.9E+02 0.015 23.4 10.0 31 159-192 77-108 (310)
355 PF05997 Nop52: Nucleolar prot 21.0 5.7E+02 0.012 22.4 17.4 118 34-151 5-139 (217)
356 KOG0803|consensus 20.7 1.3E+03 0.028 26.4 12.6 57 150-206 92-148 (1312)
357 PF12054 DUF3535: Domain of un 20.6 8.2E+02 0.018 24.1 21.5 57 3-62 102-159 (441)
358 PF04003 Utp12: Dip2/Utp12 Fam 20.5 3.2E+02 0.0069 20.7 5.6 59 24-82 27-87 (110)
359 PF11229 DUF3028: Protein of u 20.2 9.2E+02 0.02 24.5 12.7 31 26-56 94-125 (589)
360 PF12333 Ipi1_N: Rix1 complex 20.1 2.8E+02 0.006 21.2 5.1 39 176-214 5-43 (102)
361 COG1698 Uncharacterized protei 20.1 4E+02 0.0086 20.2 8.8 62 67-158 13-76 (93)
No 1
>KOG0213|consensus
Probab=100.00 E-value=7.2e-71 Score=532.97 Aligned_cols=312 Identities=75% Similarity=1.191 Sum_probs=306.4
Q ss_pred hHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH
Q psy10471 7 LGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK 85 (318)
Q Consensus 7 ~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~ 85 (318)
..+++|..+..+.|- .|.|++++|+|.++|+|++.|.+|+.+++..+|.||.++++|++.+|||+||++|+++|++.++
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888886 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHH
Q psy10471 86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL 165 (318)
Q Consensus 86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al 165 (318)
.+||+|+.|||+|++.+||++++.+||++||+|+||.|+|++.||+++++.|+||+|+|+||++|+.||.+||++|++++
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHH
Q psy10471 166 SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFM 245 (318)
Q Consensus 166 ~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii 245 (318)
+++|+++|...++|++.++|.+.+++.|+|+.+||+++++|.+++.++.+.|+++.++|++|++||+|+|++|++.+++.
T Consensus 1020 sf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFD 1099 (1172)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHHhhccccccccccCCCCCcccccccccccccccC
Q psy10471 246 DAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318 (318)
Q Consensus 246 ~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 318 (318)
+++|.++.++|+..+++|+++|+|||+++||+.||++||++|++++|+++|+||.++|+.+|.|.|.||+|++
T Consensus 1100 e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv~~ypv~ed~p~n~y~~~eld~~l 1172 (1172)
T KOG0213|consen 1100 EAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALVACYPVEEDDPENAYYRYELDYVL 1172 (1172)
T ss_pred HHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhhhccccCCCCcchhhhhhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=100.00 E-value=7.9e-65 Score=483.83 Aligned_cols=310 Identities=51% Similarity=0.871 Sum_probs=299.1
Q ss_pred hHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH
Q psy10471 7 LGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK 85 (318)
Q Consensus 7 ~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~ 85 (318)
..+++|..+-.+.|- .|.|++++|+|.++|+|++.|.+|..+++..+|.||.++++|+.++|||+||++|+++|++.++
T Consensus 665 sil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nK 744 (975)
T COG5181 665 SILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNK 744 (975)
T ss_pred HHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhH
Confidence 457788888888885 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHH
Q psy10471 86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL 165 (318)
Q Consensus 86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al 165 (318)
++||.|..|||+|++.+||++++..|+++||+|+||.|+|++.||+++++.|+||.|+|++|+.|++||.++|+++++++
T Consensus 745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 745 EIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHH
Q psy10471 166 SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFM 245 (318)
Q Consensus 166 ~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii 245 (318)
+++|+++|....+|++.+.|.+.++++|+|+.+||+++++|.+++.++.+.|.++.++|++|.+||+|+|++|++.+++.
T Consensus 825 ~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~ 904 (975)
T COG5181 825 CFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFD 904 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHHhhccccccccccCCCCCcccccccccccccccC
Q psy10471 246 DAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318 (318)
Q Consensus 246 ~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 318 (318)
+++++++.++|++.|+.|+++|+|||+++||..||++||.+|...+|+++||||..+|. |.+...||++.|
T Consensus 905 Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~ypv~~d~--n~e~~~~l~i~i 975 (975)
T COG5181 905 EGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVEEDL--NPELARTLHICI 975 (975)
T ss_pred HHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcccccccccccCCCCc--CHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999765 556667887653
No 3
>KOG0213|consensus
Probab=99.95 E-value=7.5e-26 Score=220.76 Aligned_cols=265 Identities=25% Similarity=0.340 Sum_probs=221.9
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL----- 77 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll----- 77 (318)
..|||++++++++|+++||+++||+..++.++...+.|++..||..++.+++.+|+.+++|. +..+..++..|+
T Consensus 527 qaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~ 605 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ 605 (1172)
T ss_pred hhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998877 677777766665
Q ss_pred -----------------------------------------------------------------------HHhhh--ch
Q psy10471 78 -----------------------------------------------------------------------ELLKA--HK 84 (318)
Q Consensus 78 -----------------------------------------------------------------------~~L~d--~~ 84 (318)
+++.. .+
T Consensus 606 hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~ 685 (1172)
T KOG0213|consen 606 HRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFS 685 (1172)
T ss_pred ccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhh
Confidence 11122 23
Q ss_pred HHHHHHHH---------HHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--------ccchHHHH
Q psy10471 85 KAIRRATV---------NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALM 147 (318)
Q Consensus 85 ~~vR~~av---------~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--------~~vip~L~ 147 (318)
+|.|+.|. .+...||+++|....+...+..||++..+.|.|++.++..|.-..+- ...+..++
T Consensus 686 fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil 765 (1172)
T KOG0213|consen 686 FWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGIL 765 (1172)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 44454443 45556777777777888899999999899999999998755433321 24566666
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471 148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLN 227 (318)
Q Consensus 148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~ 227 (318)
..++.++.+. ..++..+..+.+++|.++++|+++|+..+++.+++.++.+|++++++++.++.+++.|+.+..+.|+..
T Consensus 766 ~Afqeqtt~d-~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv 844 (1172)
T KOG0213|consen 766 YAFQEQTTED-SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV 844 (1172)
T ss_pred HHHHhcccch-hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 6665544332 368899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCChHHHHHHHHHHHHHHHHcChhh-------HHHhHHHHhc
Q psy10471 228 YVWPNIFETSPHLVQAFMDAVEGLRVALGPVR-------ILQYVLQGLF 269 (318)
Q Consensus 228 ~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~-------~~~~vl~~l~ 269 (318)
.+++.+.+++|++..+|+.+|++|..++|... +.|.+.|.+-
T Consensus 845 vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 845 VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence 99999999999999999999999999999755 5666666663
No 4
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=2e-22 Score=193.98 Aligned_cols=273 Identities=18% Similarity=0.176 Sum_probs=215.9
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL----- 77 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll----- 77 (318)
..|||+++++++++...|+...||+.+++.++...++|++..||..++++++.+|+..++|. +..+..++..|+
T Consensus 332 ~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~ 410 (975)
T COG5181 332 EARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ 410 (975)
T ss_pred hhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999888665 445544444443
Q ss_pred -----------------------------------------------------------------------HHhhh--ch
Q psy10471 78 -----------------------------------------------------------------------ELLKA--HK 84 (318)
Q Consensus 78 -----------------------------------------------------------------------~~L~d--~~ 84 (318)
+.... +.
T Consensus 411 hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~ 490 (975)
T COG5181 411 HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSP 490 (975)
T ss_pred cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhch
Confidence 11111 34
Q ss_pred HHHHHHHH---------HHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--------ccchHHHH
Q psy10471 85 KAIRRATV---------NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALM 147 (318)
Q Consensus 85 ~~vR~~av---------~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--------~~vip~L~ 147 (318)
+|.||.|. .|...+|+..|...+...++++++|+....|.|++.+..-++...+- .-.+.+++
T Consensus 491 fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il 570 (975)
T COG5181 491 FWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSIL 570 (975)
T ss_pred HHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 45565555 56666777666666888899999998888899988877654432221 13444555
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471 148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLN 227 (318)
Q Consensus 148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~ 227 (318)
+.++.++.+ ...++.+++.+..+++..+++|++.|+..+++.+++..+.+|+.++++++.++..++.||....+-++.+
T Consensus 571 ~Afqeq~~t-~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~ 649 (975)
T COG5181 571 NAFQEQDTT-VGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN 649 (975)
T ss_pred HHHHhcccc-ccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH
Confidence 555443322 2447788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCChHHHHHHHHHHHHHHHHcChhh-------HHHhHHHHhccccccchH
Q psy10471 228 YVWPNIFETSPHLVQAFMDAVEGLRVALGPVR-------ILQYVLQGLFHPARKVRD 277 (318)
Q Consensus 228 ~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~-------~~~~vl~~l~~~a~~~r~ 277 (318)
.+++++.+++|++...|+.+|++|..+.|-+. +.|.+.|.+-.-++|+..
T Consensus 650 iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~ 706 (975)
T COG5181 650 ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVA 706 (975)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhh
Confidence 99999999999999999999999999999765 445555555333333333
No 5
>KOG2171|consensus
Probab=99.86 E-value=2.8e-20 Score=190.24 Aligned_cols=294 Identities=18% Similarity=0.202 Sum_probs=224.8
Q ss_pred hhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 5 KNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 5 r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
.+.|.++|+.+|..+| ..+.|++ ++.+-..++.++++.|+|++.+||.+++++++++ ...+.+|+...++.|+|+
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~p~~---~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVLPPL---FEALEAMLQSTEWKERHAALLALSVIAEGCSDVM-IGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred HHHHHHHHHHHHhcCChhhehHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCCC
Confidence 5689999999999776 4677655 4555556699999999999999999999999988 678888999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCcccchH---HHHH----
Q psy10471 84 KKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSPFTVLP---ALMN---- 148 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p~~vip---~L~~---- 148 (318)
++.||.+|+.++||++..+.|. .+++.|+..+.+.+. ++..-.+-|+-..++.|.+..+-| .+|+
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 345556666554433 333333444444567776543333 3333
Q ss_pred HhcC-CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHhhhhcCCCchh---HHH
Q psy10471 149 EYRV-PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTACATIKHMALGVYGFGCED---ALT 223 (318)
Q Consensus 149 ~~~d-~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~-~~~R~~a~~~i~~la~~~~~~~~~~---~i~ 223 (318)
.+.. ..+.++..++.+|.++..+-+..|.+|.+.++|.+.+++.+.+ ...|...++++++++.+....|++. ...
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 3333 4678999999999999999999999999999999999998777 7888888888888888877777642 222
Q ss_pred HHHHhhh---hcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhcccc--------------------------
Q psy10471 224 HLLNYVW---PNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLFHPA-------------------------- 272 (318)
Q Consensus 224 hll~~l~---~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~~~a-------------------------- 272 (318)
.+.+.++ .++.+.+...+...+..+.++|+.+|++| |+|.++|.++.-+
T Consensus 562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~ 641 (1075)
T KOG2171|consen 562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV 641 (1075)
T ss_pred HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence 2333333 34667788899999999999999999998 9999999996311
Q ss_pred -----------ccchHHHHHHHHHhhccccccccccCCCCC
Q psy10471 273 -----------RKVRDVYWKIYNSLYIGGQDALISAYPRIQ 302 (318)
Q Consensus 273 -----------~~~r~~~w~i~~~~~~~~~~~~~p~~p~~~ 302 (318)
+-+.+.+...|+++..++...-.+|.|+++
T Consensus 642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve 682 (1075)
T KOG2171|consen 642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVE 682 (1075)
T ss_pred ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 124445666777776666666677777775
No 6
>KOG2023|consensus
Probab=99.83 E-value=7.5e-20 Score=177.59 Aligned_cols=243 Identities=19% Similarity=0.257 Sum_probs=194.4
Q ss_pred hhhhHHHHHHHHHHHhcc--CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 4 DKNLGIKIVQQIAILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~--~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
.|++|+-++|.+|+ || .|.||+++|+|.+++.|.|..|-||..+||||++.+.+.-..=.-+.+-|++.++++.+-
T Consensus 409 vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll 486 (885)
T KOG2023|consen 409 VREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL 486 (885)
T ss_pred hhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh
Confidence 47899999999999 87 799999999999999999999999999999999999875532224788899999999999
Q ss_pred hchHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhcccchhhHHH--HHHHHHHHHhhcC-----c-c--cchHH
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQNRVC--TTVAIAIVAETCS-----P-F--TVLPA 145 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~~~~~R~~--~~~ai~~i~~~~~-----p-~--~vip~ 145 (318)
|.+++|+.+|+.+|+.+-+.-|+. .++++|+..++ .+|+|.. .+.||+++|+.+| | | .+||+
T Consensus 487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~--kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPP 564 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG--KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPP 564 (885)
T ss_pred cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH--HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccH
Confidence 999999999999999999988854 45555555544 4555554 5899999999987 2 3 79999
Q ss_pred HHHHhc---CCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH---h----------------cCCHHHHHHHH
Q psy10471 146 LMNEYR---VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL---M----------------DRDLVHRQTAC 203 (318)
Q Consensus 146 L~~~~~---d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l---~----------------~~~~~~R~~a~ 203 (318)
|+..+. |.+.++ -..+++++++..++|..|.||.+ |.+.+++ . ..|..+-..+.
T Consensus 565 Li~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~---~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sL 640 (885)
T KOG2023|consen 565 LIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQ---PVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSL 640 (885)
T ss_pred HHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCH---HHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeH
Confidence 999773 433333 56899999999999999999987 3344433 1 11234446788
Q ss_pred HHHHHHhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 204 ATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 204 ~~i~~la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
++++.+++++. .+.++.+ ..++..++.+..|+-|+||++....++-++++-
T Consensus 641 DL~SGLaegLg-~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c 693 (885)
T KOG2023|consen 641 DLLSGLAEGLG-SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC 693 (885)
T ss_pred HHHhHHHHHhh-hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 89999999884 4445433 237888889999999999999999999999986
No 7
>KOG2171|consensus
Probab=99.77 E-value=1.1e-16 Score=163.99 Aligned_cols=296 Identities=19% Similarity=0.223 Sum_probs=192.1
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHH----
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELL---- 77 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll---- 77 (318)
+-|++|+.++..+....|....||++.+.+++.+.+.|++..||.+|++++|.++......-. .+.+-.++..++
T Consensus 133 ~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~ 212 (1075)
T KOG2171|consen 133 SLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQ 212 (1075)
T ss_pred chhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhH
Confidence 568999999999999999999999999999999999998766999999999998875421000 111111111111
Q ss_pred -----------------------------------------HHhhh--chHHHHHHHHHHH-------------------
Q psy10471 78 -----------------------------------------ELLKA--HKKAIRRATVNTF------------------- 95 (318)
Q Consensus 78 -----------------------------------------~~L~d--~~~~vR~~av~~l------------------- 95 (318)
++.++ -+.++|..|+..+
T Consensus 213 ~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~ 292 (1075)
T KOG2171|consen 213 EVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGH 292 (1075)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhc
Confidence 11111 1223444444443
Q ss_pred --------------------------------------------------------------------------------
Q psy10471 96 -------------------------------------------------------------------------------- 95 (318)
Q Consensus 96 -------------------------------------------------------------------------------- 95 (318)
T Consensus 293 ~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Al 372 (1075)
T KOG2171|consen 293 TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLAL 372 (1075)
T ss_pred cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence
Q ss_pred HHHHhhhCHH------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-------cchHHHHHHhcCC-cchHHHHH
Q psy10471 96 GYIAKAIGPH------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-------TVLPALMNEYRVP-ELNVQNGV 161 (318)
Q Consensus 96 g~la~~igp~------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-------~vip~L~~~~~d~-~~~v~~~v 161 (318)
+.+++.++.+ .+++..++.|+|++-++|+++..|||-++....|. .+.|+|...+.++ +..++..+
T Consensus 373 s~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahA 452 (1075)
T KOG2171|consen 373 SVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHA 452 (1075)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHH
Confidence 3333322221 24444455555555555555555555555444441 3444555555443 34555555
Q ss_pred HHHHHHHHH-HHccccccchhhhHH-HHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC--CchhHHHHHHHhhhhccc-CC
Q psy10471 162 LKALSFLFE-YIGEMGKDYIYAVTP-LLEDALMDRDLVHRQTACATIKHMALGVYGF--GCEDALTHLLNYVWPNIF-ET 236 (318)
Q Consensus 162 l~al~~i~~-~lg~~~~~yl~~iiP-~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~--~~~~~i~hll~~l~~~i~-d~ 236 (318)
..|+-.+++ ..|+...||++.++- .+.-+...+.+.+|.++..+|+++|...+.. .+.+++.+.+..++.+-. ++
T Consensus 453 a~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d 532 (1075)
T KOG2171|consen 453 AAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKD 532 (1075)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchh
Confidence 555445554 457788999999888 5666666777999999999999999988533 123333333333345544 45
Q ss_pred ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh-----c-----cccccchH---HHHHHHHHhhccccccccccCCCC
Q psy10471 237 SPHLVQAFMDAVEGLRVALGPVRILQYVLQGL-----F-----HPARKVRD---VYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 237 ~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l-----~-----~~a~~~r~---~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
...+|...+++++.++.|+|.+.|.|+--+.+ . .+..+.|+ .+|..++++|+. .|.||+|.+
T Consensus 533 ~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~---~F~p~L~~V 607 (1075)
T KOG2171|consen 533 LRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGD---DFAPFLPVV 607 (1075)
T ss_pred hHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhch---hhHhHHHHH
Confidence 67899999999999999999999999887776 1 12233344 778888888865 999998876
No 8
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=99.58 E-value=6.8e-15 Score=124.34 Aligned_cols=146 Identities=22% Similarity=0.354 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhccc--chhhHHHHHHHH---HH--HHhhc
Q psy10471 66 AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ--ERQNRVCTTVAI---AI--VAETC 137 (318)
Q Consensus 66 ~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~--~~~~R~~~~~ai---~~--i~~~~ 137 (318)
+.+++.++..|+++|+. ++.++|++|++++|.||+ ++|+..- .......+. +...-.+....+ +. ..+.+
T Consensus 5 Y~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 5 YLDYPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred HHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhhHHhhccCCCchHHH
Confidence 36777777778899999 567799999999999995 9998442 111111100 011111111111 12 46888
Q ss_pred CcccchHHHHHHhcCCcchHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 138 SPFTVLPALMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 138 ~p~~vip~L~~~~~d~~~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
+|..++.+||+.++|++.+.+ ..+++++.+||+++|.+|.+|+++++|.+.++++.++...|+...+.++.+..++
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997665 7899999999999999999999999999999999999999999999998887765
No 9
>PRK09687 putative lyase; Provisional
Probab=99.51 E-value=2.3e-12 Score=118.64 Aligned_cols=217 Identities=14% Similarity=0.124 Sum_probs=141.7
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHhhhC-H-
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIG-P- 104 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~-L~d~~~~vR~~av~~lg~la~~ig-p- 104 (318)
+.+.+.+..+++|+++.+|+.|+++||++...... -.+..+. |..+ ++|+...||+.|+.++|.++..-. |
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~---L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~ 126 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNI---LNNLALEDKSACVRASAINATGHRCKKNPLYS 126 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHH---HHHHHhcCCCHHHHHHHHHHHhcccccccccc
Confidence 45666677777888888888888888887542111 1122233 2233 466777888888888888753221 1
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471 105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 184 (318)
Q Consensus 105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii 184 (318)
..++..+...+++++.++|..++.+++.+.. -.++|+|+..++|++..++..++.+++.+ +. --+.++
T Consensus 127 ~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~~----~~~~~~ 194 (280)
T PRK09687 127 PKIVEQSQITAFDKSTNVRFAVAFALSVIND----EAAIPLLINLLKDPNGDVRNWAAFALNSN----KY----DNPDIR 194 (280)
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----CC----CCHHHH
Confidence 1345556666777766788888888764432 26778888888888888888887777765 10 125677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhH
Q psy10471 185 PLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264 (318)
Q Consensus 185 P~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~v 264 (318)
|.+...+.|.+..+|..++..++.+ +....+.++++.+ . +++++..++++++.+ |.....|.+
T Consensus 195 ~~L~~~L~D~~~~VR~~A~~aLg~~-------~~~~av~~Li~~L-~-----~~~~~~~a~~ALg~i----g~~~a~p~L 257 (280)
T PRK09687 195 EAFVAMLQDKNEEIRIEAIIGLALR-------KDKRVLSVLIKEL-K-----KGTVGDLIIEAAGEL----GDKTLLPVL 257 (280)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHcc-------CChhHHHHHHHHH-c-----CCchHHHHHHHHHhc----CCHhHHHHH
Confidence 8888888888888888888887543 4456666666664 2 233666555555543 556788888
Q ss_pred HHHhc-cccccchHHH
Q psy10471 265 LQGLF-HPARKVRDVY 279 (318)
Q Consensus 265 l~~l~-~~a~~~r~~~ 279 (318)
...+- +++.+++...
T Consensus 258 ~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 258 DTLLYKFDDNEIITKA 273 (280)
T ss_pred HHHHhhCCChhHHHHH
Confidence 88773 5555555433
No 10
>KOG0211|consensus
Probab=99.46 E-value=5.8e-13 Score=135.45 Aligned_cols=248 Identities=16% Similarity=0.247 Sum_probs=203.2
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH- 105 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~- 105 (318)
-.++.|.+..+++|.+|+||++++..+|.+|...+......++++.+. ++..|++.+||.+|+++++.+.+.+...
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~---~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLI---QLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHh---hhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 357889999999999999999999999999987665332355555544 6669999999999999999999877765
Q ss_pred ----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc
Q psy10471 106 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK 177 (318)
Q Consensus 106 ----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~ 177 (318)
.+.+.+++...+.+-++|++++....-+....+| +...|+.++.++|++.+++.++.+-...+...+...+-
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 4556666666666669999999988776666665 57899999999999999998888888877776654332
Q ss_pred cch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHH---HHHHHHH
Q psy10471 178 DYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFM---DAVEGLR 252 (318)
Q Consensus 178 ~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii---~~i~~i~ 252 (318)
+-+ ..++|.+..++.+.+.++|...+..+..+++.. |++..+.|+++..+..++|+.+.||.+++ ..++...
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~---~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL---PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccC---CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 333 457899999999999999999999998888887 69999999999999999999999999999 6777788
Q ss_pred HHcChhhHHHhHHHHhccccccchHHHHHHH
Q psy10471 253 VALGPVRILQYVLQGLFHPARKVRDVYWKIY 283 (318)
Q Consensus 253 ~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~ 283 (318)
...|.+...+.++|++-..+. +..||+-
T Consensus 469 ~v~g~~~~s~slLp~i~el~~---d~~wRvr 496 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAE---DLLWRVR 496 (759)
T ss_pred Ccccchhhhhhhhhhhhhhcc---chhHHHH
Confidence 888999999999999976555 3356644
No 11
>PRK09687 putative lyase; Provisional
Probab=99.40 E-value=1.4e-11 Score=113.50 Aligned_cols=232 Identities=16% Similarity=0.075 Sum_probs=167.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-HHHHH
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-HDVLA 109 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-~~~l~ 109 (318)
++-+.+.|.|.+..||..++++|+++.+ ++..+. +.+.++++++.+|+.++++||+++..-.+ ...++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~---l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRL---AIELCSSKNPIERDIGADILSQLGMAKRCQDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHH---HHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3446777899999999999999997753 122223 34556888899999999999998752221 24566
Q ss_pred HHHHh-hcccchhhHHHHHHHHHHHHhhcC-c-ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471 110 TLLNN-LKVQERQNRVCTTVAIAIVAETCS-P-FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL 186 (318)
Q Consensus 110 ~Ll~~-Lk~~~~~~R~~~~~ai~~i~~~~~-p-~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~ 186 (318)
.|... +++++..+|..++.++|.++.... + ..++..+...+.|++..||..++.++..+ |. +..+|.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~------~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND------EAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC------HHHHHH
Confidence 66665 567777899999999987753322 2 24566677788899999999998888532 21 567799
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471 187 LEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ 266 (318)
Q Consensus 187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~ 266 (318)
+..++++.+..+|..++.+++.+.. +.......+ +..+.|.+++||..++.+++. +|...-.|+++.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L----~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~ 230 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAF----VAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIK 230 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHH----HHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHH
Confidence 9999999999999999999987721 222333333 455678999999999999987 577788888888
Q ss_pred HhccccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471 267 GLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 267 ~l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
.+-++. ..+++..++..-...+.+|.|-..
T Consensus 231 ~L~~~~-----~~~~a~~ALg~ig~~~a~p~L~~l 260 (280)
T PRK09687 231 ELKKGT-----VGDLIIEAAGELGDKTLLPVLDTL 260 (280)
T ss_pred HHcCCc-----hHHHHHHHHHhcCCHhHHHHHHHH
Confidence 876543 235677777644445666665544
No 12
>KOG2023|consensus
Probab=99.38 E-value=3.4e-12 Score=124.90 Aligned_cols=219 Identities=20% Similarity=0.196 Sum_probs=158.9
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|..+..+||-||.+.|..++| .++|.+...|.++.+.||++++.++|.+|+++-.++ .+.++.++.-|++.|.|++
T Consensus 372 RkCSAAaLDVLanvf~~elL~---~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~-~p~LpeLip~l~~~L~DKk 447 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDELLP---ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF-VPHLPELIPFLLSLLDDKK 447 (885)
T ss_pred hhccHHHHHHHHHhhHHHHHH---HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc-ccchHHHHHHHHHHhccCc
Confidence 566788999999998876654 467777777788899999999999999999887665 4444445555678889999
Q ss_pred HHHHHHHHHHHHHHHhhhC---HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHH
Q psy10471 85 KAIRRATVNTFGYIAKAIG---PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV 161 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~ig---p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~v 161 (318)
+-||.-++||+++.++-+- +++.+. .|+..|++.+-|.+..||+++
T Consensus 448 plVRsITCWTLsRys~wv~~~~~~~~f~-------------------------------pvL~~ll~~llD~NK~VQEAA 496 (885)
T KOG2023|consen 448 PLVRSITCWTLSRYSKWVVQDSRDEYFK-------------------------------PVLEGLLRRLLDSNKKVQEAA 496 (885)
T ss_pred cceeeeeeeeHhhhhhhHhcCChHhhhH-------------------------------HHHHHHHHHHhcccHHHHHHH
Confidence 9999999999998776321 111111 334446666778888999999
Q ss_pred HHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHhh---hhcccCCC
Q psy10471 162 LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNYV---WPNIFETS 237 (318)
Q Consensus 162 l~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~l---~~~i~d~~ 237 (318)
+.|+..+-+--|.+.+||+..|+-.+..++..=-..--.-+-++|+++|..++-. .+-..++-++|-+ |..+.|++
T Consensus 497 csAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D 576 (885)
T KOG2023|consen 497 CSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD 576 (885)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc
Confidence 9999999998899999999988888877773221111134578888888888311 1222333333322 56777887
Q ss_pred hHHHHHHHHHHHHHHHHcChhh
Q psy10471 238 PHLVQAFMDAVEGLRVALGPVR 259 (318)
Q Consensus 238 ~~vr~~ii~~i~~i~~alG~~~ 259 (318)
+++-- .++++.+++.++|.+|
T Consensus 577 KdLfP-LLEClSsia~AL~~gF 597 (885)
T KOG2023|consen 577 KDLFP-LLECLSSIASALGVGF 597 (885)
T ss_pred chHHH-HHHHHHHHHHHHhccc
Confidence 77765 8999999999999765
No 13
>KOG0891|consensus
Probab=99.35 E-value=1.6e-11 Score=136.24 Aligned_cols=255 Identities=18% Similarity=0.268 Sum_probs=196.5
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHhhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLKA 82 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~L~d 82 (318)
-++++.++++|+.++|..|..+++.+++.+.+.+.|. ++..|+++.+++|+++++.+..+.+ ..++.++..+.+.++.
T Consensus 665 ~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~t 744 (2341)
T KOG0891|consen 665 EKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKT 744 (2341)
T ss_pred HHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhH
Confidence 4688999999999999999999999999999999995 4888999999999999999976664 4555566667788888
Q ss_pred -chHHHHHHHHHHHHHHHhhhCHHHHHHHHHH-hhcccch---h--hHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcc
Q psy10471 83 -HKKAIRRATVNTFGYIAKAIGPHDVLATLLN-NLKVQER---Q--NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL 155 (318)
Q Consensus 83 -~~~~vR~~av~~lg~la~~igp~~~l~~Ll~-~Lk~~~~---~--~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~ 155 (318)
....+|+++++..|..+ .++|+.......+ +++.... . .+.+.......-.+.++|.+.+..++..++|+..
T Consensus 745 e~~~~ir~~~v~~~g~~g-~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~ 823 (2341)
T KOG0891|consen 745 EQSSTIRREAIRLLGLLG-ALDPYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSL 823 (2341)
T ss_pred hhhhHHHHHHHHHhhhhc-ccchhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh
Confidence 56679999999999877 4888754433333 2331111 1 2222222221112777888899999999999977
Q ss_pred hHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc
Q psy10471 156 NVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF 234 (318)
Q Consensus 156 ~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~ 234 (318)
..+ ..+++++..+|..+|.+|..|+++++|.+..+.+..++..+....+.++....+++ +|++++ ++.++
T Consensus 824 ~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~--------~h~~~~-~~~i~ 894 (2341)
T KOG0891|consen 824 SIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVR--------QHIRPY-MESIF 894 (2341)
T ss_pred HHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccc--------hhHhhh-hhhHH
Confidence 665 89999999999999999999999999999999998888888777777776666665 666665 35554
Q ss_pred C-------CChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471 235 E-------TSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF 269 (318)
Q Consensus 235 d-------~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~ 269 (318)
+ ++-.+...++..++.++.++|.++ +.|..++.++
T Consensus 895 ~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l 938 (2341)
T KOG0891|consen 895 TLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTML 938 (2341)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchh
Confidence 3 345677788999999999999876 6666666663
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.30 E-value=2.8e-10 Score=120.35 Aligned_cols=220 Identities=14% Similarity=0.087 Sum_probs=113.5
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
++.++.|...|+|+++.||.+|+.+|+.+.+..... + .|.+.|+++++.||.+|+..++.+... .+..+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------~---~L~~~L~~~d~~VR~~A~~aL~~~~~~-~~~~l 719 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------P---ALRDHLGSPDPVVRAAALDVLRALRAG-DAALF 719 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------H---HHHHHhcCCCHHHHHHHHHHHHhhccC-CHHHH
Confidence 456777888889999999999999998886532210 1 122334444455555555555544310 01000
Q ss_pred ------------------------HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHH
Q psy10471 108 ------------------------LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLK 163 (318)
Q Consensus 108 ------------------------l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~ 163 (318)
...|+..+++++..+|..++.+++.+...- ...+|.|...++|+++.+|..++.
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG--APAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--chhHHHHHHHhcCCCHHHHHHHHH
Confidence 112333344444445555555444332211 123555666666666666666666
Q ss_pred HHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHH
Q psy10471 164 ALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQA 243 (318)
Q Consensus 164 al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ 243 (318)
++..+-. . +.+.+.+..++.+.+..+|..++.+++.+ +..+.+..+ .+.+.|++..||..
T Consensus 798 aLg~~g~------~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l-------~~~~a~~~L----~~~L~D~~~~VR~~ 857 (897)
T PRK13800 798 ALAELGC------P---PDDVAAATAALRASAWQVRQGAARALAGA-------AADVAVPAL----VEALTDPHLDVRKA 857 (897)
T ss_pred HHHhcCC------c---chhHHHHHHHhcCCChHHHHHHHHHHHhc-------cccchHHHH----HHHhcCCCHHHHHH
Confidence 5554311 0 12334455566666666666666666443 122222222 33345566666666
Q ss_pred HHHHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHH
Q psy10471 244 FMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIY 283 (318)
Q Consensus 244 ii~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~ 283 (318)
++.+|..+ -|+....+.+...+-+++..||..-++.+
T Consensus 858 A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 858 AVLALTRW---PGDPAARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred HHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666653 23444555555555555555555444443
No 15
>KOG1241|consensus
Probab=99.27 E-value=7.4e-10 Score=110.18 Aligned_cols=285 Identities=15% Similarity=0.179 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA 86 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~ 86 (318)
+|=.|++-+|+..|..|.| .++|.+.+-+++++++.|++|+.++|-+-++-.+.-..+-...-+..+++.+.|+.-+
T Consensus 345 AAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 345 AAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHHhcccchh---hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence 3446899999999999998 5688888899999999999999999988774332111122222333455777899999
Q ss_pred HHHHHHHHHHHHHhhhC----HH-----------------------------------------------------HHHH
Q psy10471 87 IRRATVNTFGYIAKAIG----PH-----------------------------------------------------DVLA 109 (318)
Q Consensus 87 vR~~av~~lg~la~~ig----p~-----------------------------------------------------~~l~ 109 (318)
+|+.+-++||.+++.+. +. .++.
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~ 501 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG 501 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence 99999999999888654 11 1122
Q ss_pred HHHHhhc--c-cchhhHHHHHHHHHHHH----hhcCcc--cchHHHHH----Hhc-----C----CcchHHHHHHHHHHH
Q psy10471 110 TLLNNLK--V-QERQNRVCTTVAIAIVA----ETCSPF--TVLPALMN----EYR-----V----PELNVQNGVLKALSF 167 (318)
Q Consensus 110 ~Ll~~Lk--~-~~~~~R~~~~~ai~~i~----~~~~p~--~vip~L~~----~~~-----d----~~~~v~~~vl~al~~ 167 (318)
.|++.-. + .+...|.....|++.+- +.|+|. .+.+..+. .+. . +-.++|.-.+..+..
T Consensus 502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~ 581 (859)
T KOG1241|consen 502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQS 581 (859)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHH
Confidence 2222211 1 11246777788887543 445542 22222222 111 1 113456778888888
Q ss_pred HHHHHccccccchhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc-CCChHHHHHHH
Q psy10471 168 LFEYIGEMGKDYIYAVTPLLEDALMD-RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF-ETSPHLVQAFM 245 (318)
Q Consensus 168 i~~~lg~~~~~yl~~iiP~l~~~l~~-~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~-d~~~~vr~~ii 245 (318)
+..-.|.+..++-++++..|.+.+.. ++..+-..+.-+++.++..+ +.+|+..+..+-||+..+++ ..+-.|-.+++
T Consensus 582 i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~L-g~~F~kym~~f~pyL~~gL~n~~e~qVc~~aV 660 (859)
T KOG1241|consen 582 IIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESL-GKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAV 660 (859)
T ss_pred HHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 88888989999999999999999986 56777888999999999998 57889999999999998884 45667888999
Q ss_pred HHHHHHHHHcChhh------HHHhHHHHhcccc--cc----chHHHHHHHHHhhccccccccccCC
Q psy10471 246 DAVEGLRVALGPVR------ILQYVLQGLFHPA--RK----VRDVYWKIYNSLYIGGQDALISAYP 299 (318)
Q Consensus 246 ~~i~~i~~alG~~~------~~~~vl~~l~~~a--~~----~r~~~w~i~~~~~~~~~~~~~p~~p 299 (318)
+.++.++.+++.++ +++.+++-+..++ |. +...|.-|--++ + ..|.||+.
T Consensus 661 glVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaI--g--~~F~~Yl~ 722 (859)
T KOG1241|consen 661 GLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAI--G--ADFEPYLE 722 (859)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHH--H--HhHHHHHH
Confidence 99999999999865 5666666664433 22 233444443333 2 36777744
No 16
>KOG1241|consensus
Probab=99.26 E-value=1.3e-09 Score=108.46 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=177.8
Q ss_pred hhhhHHHHHHHHHHHhcc---CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---------------
Q psy10471 4 DKNLGIKIVQQIAILMGC---AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--------------- 65 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~---~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--------------- 65 (318)
.|..+..+.|.+-. |. ...|.+++.+|.++....|++--||+++.|++|++++..++-+.
T Consensus 380 ~reaavmAFGSIl~--gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 380 NREAAVMAFGSILE--GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG 457 (859)
T ss_pred hhhHHHHHHHhhhc--CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence 45677777776555 65 48999999999999999999999999999999999986652111
Q ss_pred -----------------------------------hhhHHHHHHHHHHHh--hh-chHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 66 -----------------------------------AREWMRICFELLELL--KA-HKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 66 -----------------------------------~~~~~~il~~Ll~~L--~d-~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
.+.|..|+..|++.- .| ++...|.+|..+++.+.+....+ +
T Consensus 458 L~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~-v 536 (859)
T KOG1241|consen 458 LNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD-V 536 (859)
T ss_pred hhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH-H
Confidence 135555555555332 12 55668999999999998744422 2
Q ss_pred HHH-------HHH---------hhcccch-hhHH---HHHHHHHHHHhhcCc----c--cchHHHHHHhcCC-cchHHHH
Q psy10471 108 LAT-------LLN---------NLKVQER-QNRV---CTTVAIAIVAETCSP----F--TVLPALMNEYRVP-ELNVQNG 160 (318)
Q Consensus 108 l~~-------Ll~---------~Lk~~~~-~~R~---~~~~ai~~i~~~~~p----~--~vip~L~~~~~d~-~~~v~~~ 160 (318)
.+. .+. .|...++ +++. .....+..|-.+.++ . .+|..|++.+..+ +.-+++.
T Consensus 537 y~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~ 616 (859)
T KOG1241|consen 537 YPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEE 616 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHH
Confidence 111 111 1222222 1111 112222222223332 1 6778888888764 4567899
Q ss_pred HHHHHHHHHHHHccccccchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCC--
Q psy10471 161 VLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETS-- 237 (318)
Q Consensus 161 vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~-- 237 (318)
++-+++....++|..|..|.+.+.|.+..-++ ..+..+-..+..+++.++..++ ..+--...-+...+.+++..+.
T Consensus 617 a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~~~h 695 (859)
T KOG1241|consen 617 AFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSPNLH 695 (859)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCcccc
Confidence 99999999999999999999999999999994 4456777888888888888875 1111111223334456665443
Q ss_pred hHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh
Q psy10471 238 PHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL 268 (318)
Q Consensus 238 ~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l 268 (318)
.+|+-.|+++.+-|+.++|.+| +..++++.+
T Consensus 696 R~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~ll 728 (859)
T KOG1241|consen 696 RNVKPAILSVFGDIALAIGADFEPYLEMVMPLL 728 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678899999999999999977 888888888
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=3.7e-09 Score=111.97 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=129.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA 109 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~ 109 (318)
-++.+.+.|+|++|.||++|+.+||.+.. ++. +..|.+.|+|++.+||.+|+.+++.+++...+. +
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~---~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---~ 687 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGF---GPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---P 687 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhH---HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch---H
Confidence 45567788899999999999999998742 222 333556779999999999999999987654432 3
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHH---------------------
Q psy10471 110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFL--------------------- 168 (318)
Q Consensus 110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i--------------------- 168 (318)
.|...|++++..+|..++.+++.+... -.+.+...++|+++.++..+++++..+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~-----~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~a 762 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAG-----DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAV 762 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccC-----CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHH
Confidence 444555666667777777777654311 012344555666666665555555532
Q ss_pred HHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471 169 FEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 248 (318)
Q Consensus 169 ~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i 248 (318)
.+++|..... -...+|.+..++.|.++.+|..++..++.+ |...... ..+...+.|+++.||..++.++
T Consensus 763 a~aL~~~~~~-~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~-------g~~~~~~---~~l~~aL~d~d~~VR~~Aa~aL 831 (897)
T PRK13800 763 AKGLATLGAG-GAPAGDAVRALTGDPDPLVRAAALAALAEL-------GCPPDDV---AAATAALRASAWQVRQGAARAL 831 (897)
T ss_pred HHHHHHhccc-cchhHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCcchhH---HHHHHHhcCCChHHHHHHHHHH
Confidence 0011100000 011245566666666666666666666444 1111110 1123445556666777766666
Q ss_pred HHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHH
Q psy10471 249 EGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNS 285 (318)
Q Consensus 249 ~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~ 285 (318)
+.+ |.+.-.+.+.+.+-+++..||..-.+.+..
T Consensus 832 ~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 832 AGA----AADVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred Hhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 543 444455666666666666566544444433
No 18
>KOG1242|consensus
Probab=99.12 E-value=6.5e-09 Score=101.91 Aligned_cols=274 Identities=16% Similarity=0.136 Sum_probs=171.1
Q ss_pred HHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy10471 15 IAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 94 (318)
Q Consensus 15 La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~ 94 (318)
+...+|....||+.+++|.++..+.|..+.||++|..+.-.+......+. .+.+.|- ++.-+.+.+.+.+.+++..
T Consensus 202 ~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~llps---ll~~l~~~kWrtK~aslel 277 (569)
T KOG1242|consen 202 AQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLLPS---LLGSLLEAKWRTKMASLEL 277 (569)
T ss_pred HHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhhhh---hHHHHHHHhhhhHHHHHHH
Confidence 34456778999999999999999999999999999988888877665544 2232222 1122222222345555555
Q ss_pred HHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHH-----------------------------------
Q psy10471 95 FGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAI----------------------------------- 132 (318)
Q Consensus 95 lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~----------------------------------- 132 (318)
+|.+++ +.|. ++++.+-..|-+..-.+|.....++-.
T Consensus 278 lg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L 356 (569)
T KOG1242|consen 278 LGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSL 356 (569)
T ss_pred HHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhh
Confidence 555553 3332 122223233322222222222222210
Q ss_pred -----HHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--ccccchhhhHHHHHHHHhcCCHHHHHHHH
Q psy10471 133 -----VAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAVTPLLEDALMDRDLVHRQTAC 203 (318)
Q Consensus 133 -----i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--~~~~yl~~iiP~l~~~l~~~~~~~R~~a~ 203 (318)
+++.-.|. .++|.+-+.+++-+.++++..++.+.++++-..+ ...+|++.++|.+...+.+..|.+|..++
T Consensus 357 ~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaa 436 (569)
T KOG1242|consen 357 GATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAA 436 (569)
T ss_pred cceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHH
Confidence 00001132 5778888888888888899999999999998833 68899999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC-ChHHHHHHHHHHHHHHHHcChhhH---HHhHHHHhcc--ccccchH
Q psy10471 204 ATIKHMALGVYGFGCEDALTHLLNYVWPNIFET-SPHLVQAFMDAVEGLRVALGPVRI---LQYVLQGLFH--PARKVRD 277 (318)
Q Consensus 204 ~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~-~~~vr~~ii~~i~~i~~alG~~~~---~~~vl~~l~~--~a~~~r~ 277 (318)
.+++.+.+.+...++++ ..|.++..+.+. ...-|....+.++.+...+|.+.+ +|-.+..+.+ +..++|+
T Consensus 437 rAL~~l~e~~g~~~f~d----~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~d 512 (569)
T KOG1242|consen 437 RALGALLERLGEVSFDD----LIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRD 512 (569)
T ss_pred HHHHHHHHHHHhhcccc----cccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhcc
Confidence 99999988886555433 333334444332 223456667777788788887654 4444444432 4445666
Q ss_pred HHHHHHHHhhcccccccccc
Q psy10471 278 VYWKIYNSLYIGGQDALISA 297 (318)
Q Consensus 278 ~~w~i~~~~~~~~~~~~~p~ 297 (318)
.+--+.+-+...-++.+.||
T Consensus 513 g~~~~~~~lp~~~~~~~~~y 532 (569)
T KOG1242|consen 513 GVIWLFYLLPYIFGFQFQPY 532 (569)
T ss_pred CeeehhhccchhhhHHhHHH
Confidence 65555555544444555555
No 19
>KOG0166|consensus
Probab=99.10 E-value=1.9e-09 Score=104.94 Aligned_cols=284 Identities=19% Similarity=0.211 Sum_probs=192.2
Q ss_pred CchhhhHHHHHHHHHHHhccCcCCChHh-----HHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCC----CCChhhHHH
Q psy10471 2 SSDKNLGIKIVQQIAILMGCAILPHLKN-----LVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPE----YVSAREWMR 71 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~-----l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~----~i~~~~~~~ 71 (318)
|.+...-+.+...+-.+....-.|++.+ ++|.+...+. +.+|+.|..|+|+|-++|+++.+ ++ ..--.|
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv-~agavp 155 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV-DAGAVP 155 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc-cCCchH
Confidence 3444445555556555555556688865 5677888774 77899999999999999986653 22 123334
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCc---
Q psy10471 72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP--- 139 (318)
Q Consensus 72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p--- 139 (318)
++. .++.+++..||..|++++|.++.. +|. -++..|+..+..... ..++-++=+++.++....|
T Consensus 156 ~fi---~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 156 IFI---QLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred HHH---HHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 444 566999999999999999999863 332 246778887775554 5556666777777765543
Q ss_pred c----cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 140 F----TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 140 ~----~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
+ .++|+|...++..+.++..-++.|++++.+.-.+. -+++ ..++|.+..++.+.+..++.-+..+++.++.+-
T Consensus 232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~-iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEK-IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH-HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 2 78999999999999999999999999998753322 2333 468999999999999999988888887754332
Q ss_pred cCCCch-hH-HH-HHHHhhhhccc-CCChHHHHHHHHHHHHHHHHcChh---------hHHHhHHHHhcccccc-chHHH
Q psy10471 214 YGFGCE-DA-LT-HLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGPV---------RILQYVLQGLFHPARK-VRDVY 279 (318)
Q Consensus 214 ~~~~~~-~~-i~-hll~~l~~~i~-d~~~~vr~~ii~~i~~i~~alG~~---------~~~~~vl~~l~~~a~~-~r~~~ 279 (318)
+.. .. +. ..++.+...+. .+..+.++.+.=+|..|+. |.. .+.|.++.++....-+ =+|+-
T Consensus 311 ---d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 311 ---DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred ---HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 221 11 11 13444333333 2445588888888887765 543 2556666666432222 23799
Q ss_pred HHHHHHhhcccccccccc
Q psy10471 280 WKIYNSLYIGGQDALISA 297 (318)
Q Consensus 280 w~i~~~~~~~~~~~~~p~ 297 (318)
|-|.|..-.+. ...+.|
T Consensus 386 waIsN~ts~g~-~~qi~y 402 (514)
T KOG0166|consen 386 WAISNLTSSGT-PEQIKY 402 (514)
T ss_pred HHHHhhcccCC-HHHHHH
Confidence 99999887665 333344
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.08 E-value=2.1e-08 Score=97.39 Aligned_cols=290 Identities=15% Similarity=0.108 Sum_probs=199.5
Q ss_pred hhhhHHHHHHHHHHHhcc---CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGC---AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLEL 79 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~---~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~ 79 (318)
.|..|+.+.|..-. |. ...|++++.+|-++....|+.--|...++|++|++|+..+..+++ ..+.+.+...+--
T Consensus 382 nreaavmAfGSvm~--gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 382 NREAAVMAFGSVMH--GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459 (858)
T ss_pred hHHHHHHHhhhhhc--CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh
Confidence 45677777776544 54 378999999999999999998899999999999999988877776 3444455555544
Q ss_pred hhhchHHHHHHHHHHHHHHHhhhCHH-------------HHHHHHHHh--hcccchhhHHHHHHHHHHHHhhcCcc----
Q psy10471 80 LKAHKKAIRRATVNTFGYIAKAIGPH-------------DVLATLLNN--LKVQERQNRVCTTVAIAIVAETCSPF---- 140 (318)
Q Consensus 80 L~d~~~~vR~~av~~lg~la~~igp~-------------~~l~~Ll~~--Lk~~~~~~R~~~~~ai~~i~~~~~p~---- 140 (318)
|.|. +.+-..+.|++-.++..+.|. .+++.|++. ++..+...|+....|++++-+-|...
T Consensus 460 l~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~ 538 (858)
T COG5215 460 LMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDI 538 (858)
T ss_pred hhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence 5553 334445666666666655542 356666653 33434468888888887643333210
Q ss_pred -------------cchHHHHHHhcCCc----chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC-HHHHHHH
Q psy10471 141 -------------TVLPALMNEYRVPE----LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTA 202 (318)
Q Consensus 141 -------------~vip~L~~~~~d~~----~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~-~~~R~~a 202 (318)
+-|.-+-+.+..++ .+++..++..+..+...-+....+--.+++.+|.+.+...+ .....-.
T Consensus 539 ~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV 618 (858)
T COG5215 539 LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDV 618 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHH
Confidence 12222223333333 35678889999999998887777777889999999998764 4455556
Q ss_pred HHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh------HHHhHHHHhccccc--c
Q psy10471 203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR------ILQYVLQGLFHPAR--K 274 (318)
Q Consensus 203 ~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~------~~~~vl~~l~~~a~--~ 274 (318)
..+|+.++..+ +.+++....++.||+...+...+..|-.++++.++.++.++|.|+ |+..+.+-+..++. .
T Consensus 619 ~~aIsal~~sl-~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~ 697 (858)
T COG5215 619 YTAISALSTSL-EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRD 697 (858)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccc
Confidence 66777776666 356788888999999999888889999999999999999999865 78888888865442 2
Q ss_pred c----hHHHHHHHHHhhccccccccccCCCC
Q psy10471 275 V----RDVYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 275 ~----r~~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
+ ...|.-|-.++ + -.|.|||.-+
T Consensus 698 lKPaiLSvFgDIAlai--g--a~F~~YL~~i 724 (858)
T COG5215 698 LKPAILSVFGDIALAI--G--ANFESYLDMI 724 (858)
T ss_pred cchHHHHHHHHHHHHH--h--hhHHHHHHHH
Confidence 2 33343333333 2 3677776543
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.02 E-value=1.3e-07 Score=92.09 Aligned_cols=260 Identities=18% Similarity=0.129 Sum_probs=181.1
Q ss_pred hhhHHHHHHHHHHHhccCcCC--ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC----C--hhhHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILP--HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV----S--AREWMRICFEL 76 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P--~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i----~--~~~~~~il~~L 76 (318)
|.|..-|+|++|......+.| |+...+...+-.+.| +|++-.++.|+.-.+++..++.. + .+.|+.|+..|
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 667888999999988777766 566777778778888 79999999999998887665322 1 58888888887
Q ss_pred HHH--hhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHH------------------hhcccchhhHHHH----HHHHHH
Q psy10471 77 LEL--LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLN------------------NLKVQERQNRVCT----TVAIAI 132 (318)
Q Consensus 77 l~~--L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~------------------~Lk~~~~~~R~~~----~~ai~~ 132 (318)
+.- ++++....|..+..++|.+.. +.|..+.+.+.+ .|..+++..+-.+ ...+..
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~-~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~a 582 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLIL-ICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEA 582 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 743 344667789999999999885 444333333322 2233333111111 111111
Q ss_pred HHhhcCc----c--cchHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHH
Q psy10471 133 VAETCSP----F--TVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT 205 (318)
Q Consensus 133 i~~~~~p----~--~vip~L~~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~ 205 (318)
|-.+..| . .+|.-+++.+..-.+ -+...|.-+|+.+..++|..|..|.+.++|.+.+.++..|..+-..+..+
T Consensus 583 iir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avgl 662 (858)
T COG5215 583 IIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGL 662 (858)
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 1122222 1 466677777765544 34578999999999999999999999999999999988888888999999
Q ss_pred HHHHhhhhcCCCchhHHHHHHHhhhhcccCC--ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 206 IKHMALGVYGFGCEDALTHLLNYVWPNIFET--SPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 206 i~~la~~~~~~~~~~~i~hll~~l~~~i~d~--~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
++.++..++ .++--.-.-+.+.+.+++..+ ..+++-.|++..+-|+.++|.+| .+|+-..|
T Consensus 663 vgdlantl~-~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F-~~YL~~im 725 (858)
T COG5215 663 VGDLANTLG-TDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANF-ESYLDMIM 725 (858)
T ss_pred HHHHHHHhh-hhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhH-HHHHHHHH
Confidence 999998874 333223333455556666554 35688899999999999999865 44444433
No 22
>KOG0166|consensus
Probab=98.94 E-value=1.1e-08 Score=99.57 Aligned_cols=244 Identities=18% Similarity=0.186 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHhccC--cCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 7 LGIKIVQQIAILMGCA--ILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~--~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
-+.-++..+|. |.. -.-.+ ..-+|.++.++..++..||+.|+|+||.+|..++.+-+.---..++..|+.++..+
T Consensus 129 eAAWaLTnIAs--gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~ 206 (514)
T KOG0166|consen 129 EAAWALTNIAS--GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS 206 (514)
T ss_pred HHHHHHHHHhc--CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc
Confidence 44556666666 542 22223 36889999999999999999999999999987764222111112455566666664
Q ss_pred -hHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHH
Q psy10471 84 -KKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMN 148 (318)
Q Consensus 84 -~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~ 148 (318)
..+..|.+.|++..+...-.|. .+++.|...++..|..+..-+.-|++++++.... +.++|.|..
T Consensus 207 ~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~ 286 (514)
T KOG0166|consen 207 DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD 286 (514)
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH
Confidence 4478999999999999876542 5788888888888887777788888888754432 579999999
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCc-hhHHH-H
Q psy10471 149 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGC-EDALT-H 224 (318)
Q Consensus 149 ~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~-~~~i~-h 224 (318)
.+..++..++..++.++.+|.-+-+...---+ ...+|.|..++. +...+.|+.++++|+.++-+-. .. ...+. .
T Consensus 287 lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~--~qiqaVida~ 364 (514)
T KOG0166|consen 287 LLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ--EQIQAVIDAN 364 (514)
T ss_pred HHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH--HHHHHHHHcc
Confidence 99999999999999999998764332221122 458899999998 5556799999999988755432 11 11111 1
Q ss_pred HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
++|.++..+...+-++|+.+.=+|+.++..
T Consensus 365 l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 365 LIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred cHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 555555555556667888777777755443
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.93 E-value=2.9e-09 Score=82.31 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
.|+.|+.+|...|+..|..+.+|+++|+|.++..+.|++++||..|+.+|.+++...+..+ .+.+..|+..|.+...|+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 5889999999999999999999999999999999999999999999999999999887765 567888888899999999
Q ss_pred hHHHHHHH
Q psy10471 84 KKAIRRAT 91 (318)
Q Consensus 84 ~~~vR~~a 91 (318)
+.+||.+|
T Consensus 81 d~~Vr~~a 88 (97)
T PF12755_consen 81 DENVRSAA 88 (97)
T ss_pred chhHHHHH
Confidence 99999876
No 24
>KOG0915|consensus
Probab=98.92 E-value=1.9e-07 Score=99.07 Aligned_cols=227 Identities=15% Similarity=0.185 Sum_probs=148.3
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh--
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK-- 100 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~-- 100 (318)
+--|.++|+.-+++.|.+..++||+++|.||.++-++-+...-.+.++.++..+++.+.|=+.+||.+|=++.-.+++
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999998754322146666677878888888788899886555544433
Q ss_pred -hhC-H------HHHHHHHHHhhcccch-----hhHHHHHHHHHHHHhhcC----cc--cchHHHHHHhcCCcch-----
Q psy10471 101 -AIG-P------HDVLATLLNNLKVQER-----QNRVCTTVAIAIVAETCS----PF--TVLPALMNEYRVPELN----- 156 (318)
Q Consensus 101 -~ig-p------~~~l~~Ll~~Lk~~~~-----~~R~~~~~ai~~i~~~~~----p~--~vip~L~~~~~d~~~~----- 156 (318)
.++ + .++++.++..|-++-- .+|......++-+++..+ |+ .++|.|++.+..-|+.
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence 222 1 3567777777654322 466666556655555444 54 7888888777554322
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHHccccc
Q psy10471 157 -----------------------------------------------------------VQNGVLKALSFLFEYIGEMGK 177 (318)
Q Consensus 157 -----------------------------------------------------------v~~~vl~al~~i~~~lg~~~~ 177 (318)
.+-+..+-+..+..-+|.+++
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence 122233333344555666677
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 178 DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 178 ~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
||-..++-.+.-.++|++.++|++.+.++++++... .++.+++++.-+.-.++++.++.++..+.++-.|+.
T Consensus 1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S----s~dq~qKLie~~l~~~l~k~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS----SPDQMQKLIETLLADLLGKDESLKSISCATISNIAN 1344 (1702)
T ss_pred cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHH
Confidence 777666666666668889999999999999886654 345555555554555554444444544444443433
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.89 E-value=1.3e-07 Score=94.22 Aligned_cols=255 Identities=17% Similarity=0.191 Sum_probs=161.4
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|..|+++++.++ ..++.| .+.+.+.+.+.|++|.||+.|+.++.++....++.+... |.+.+. +.|+|++
T Consensus 96 ~~lAL~~l~~i~---~~~~~~---~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~---~lL~d~~ 165 (526)
T PF01602_consen 96 RGLALRTLSNIR---TPEMAE---PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLK---QLLSDKD 165 (526)
T ss_dssp HHHHHHHHHHH----SHHHHH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHH---HHTTHSS
T ss_pred HHHHHhhhhhhc---ccchhh---HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHh---hhccCCc
Confidence 556777777666 345664 467777778889999999999999999999888765222 777766 5559988
Q ss_pred HHHHHHHHHHHHHH---HhhhCH--HHHHH---------------HHHHhhc------------------------ccch
Q psy10471 85 KAIRRATVNTFGYI---AKAIGP--HDVLA---------------TLLNNLK------------------------VQER 120 (318)
Q Consensus 85 ~~vR~~av~~lg~l---a~~igp--~~~l~---------------~Ll~~Lk------------------------~~~~ 120 (318)
+.|+.+|+..+..+ -+...+ ..+.. .+++.|+ ....
T Consensus 166 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~ 245 (526)
T PF01602_consen 166 PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSP 245 (526)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcccc
Confidence 99999999998887 111000 00111 1222221 0000
Q ss_pred hhHHHHHHHHHHHHhhcCc-----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC
Q psy10471 121 QNRVCTTVAIAIVAETCSP-----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD 195 (318)
Q Consensus 121 ~~R~~~~~ai~~i~~~~~p-----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~ 195 (318)
.+...++.++. ...| ..+++.+...+.+++.+++-.+++++..+...- .+++...-..+..+..+.|
T Consensus 246 ~V~~e~~~~i~----~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~----~~~v~~~~~~~~~l~~~~d 317 (526)
T PF01602_consen 246 SVVYEAIRLII----KLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN----PPAVFNQSLILFFLLYDDD 317 (526)
T ss_dssp HHHHHHHHHHH----HHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC----HHHHGTHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHH----HhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc----chhhhhhhhhhheecCCCC
Confidence 11111111111 1122 257888999999999999999999999887653 1223222222333344889
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhccccc
Q psy10471 196 LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPAR 273 (318)
Q Consensus 196 ~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~~~a~ 273 (318)
..+|..+..++..++..- .....+..++.|+-+. .+++++..++.+++.++....+ +.+.+.++..+.....
T Consensus 318 ~~Ir~~~l~lL~~l~~~~---n~~~Il~eL~~~l~~~---~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~ 391 (526)
T PF01602_consen 318 PSIRKKALDLLYKLANES---NVKEILDELLKYLSEL---SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGD 391 (526)
T ss_dssp HHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGG
T ss_pred hhHHHHHHHHHhhccccc---chhhHHHHHHHHHHhc---cchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccc
Confidence 999999999998876543 3445666676664122 4678999999999999999865 4488888888865544
Q ss_pred cchHHHHHHH
Q psy10471 274 KVRDVYWKIY 283 (318)
Q Consensus 274 ~~r~~~w~i~ 283 (318)
.+.+..|...
T Consensus 392 ~~~~~~~~~i 401 (526)
T PF01602_consen 392 YVSNEIINVI 401 (526)
T ss_dssp GCHCHHHHHH
T ss_pred cccchHHHHH
Confidence 4455445444
No 26
>KOG1240|consensus
Probab=98.85 E-value=4.4e-07 Score=94.54 Aligned_cols=256 Identities=16% Similarity=0.131 Sum_probs=179.0
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC--CCC----hhhHHHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE--YVS----AREWMRICFELLE 78 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~--~i~----~~~~~~il~~Ll~ 78 (318)
|-.|++++..++.-... .--++-++|.++.+++|+.+.||.+|+.||-++-....+ ..+ ++.+.|-+. .
T Consensus 440 K~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~---~ 514 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN---H 514 (1431)
T ss_pred HHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH---h
Confidence 55778888888874433 334678999999999999999999999999998764432 222 344455544 4
Q ss_pred Hhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHH------HHhhcccch----------hhHHHHHHHHHHHHhhcCccc
Q psy10471 79 LLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATL------LNNLKVQER----------QNRVCTTVAIAIVAETCSPFT 141 (318)
Q Consensus 79 ~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~L------l~~Lk~~~~----------~~R~~~~~ai~~i~~~~~p~~ 141 (318)
++.| ....||.+--.+++++|+..--+...... ++...++.. +.|..|.+.
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~------------ 582 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM------------ 582 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH------------
Confidence 4477 56669999999999999754332111111 111111110 122222221
Q ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH
Q psy10471 142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA 221 (318)
Q Consensus 142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~ 221 (318)
....+.|+++.|+++.++.|.-++.-.|..- -=.-|++.+..+++|.|...|-...+.|..++-.+ |..+.
T Consensus 583 ----v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V---G~rs~ 653 (1431)
T KOG1240|consen 583 ----VSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV---GWRSV 653 (1431)
T ss_pred ----HHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEE---eeeeH
Confidence 3345578888999999999998888887521 11357899999999999999999999887776655 44434
Q ss_pred HHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh-----hHHHhHHHHhccccccchHHHHHHHHHh
Q psy10471 222 LTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFHPARKVRDVYWKIYNSL 286 (318)
Q Consensus 222 i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~-----~~~~~vl~~l~~~a~~~r~~~w~i~~~~ 286 (318)
=+-++|++.+.+.|..+.|...+++++..+++.---+ .+.+-+.|.+.||+.-+|..-..+....
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999988754332 3788899999999987777555544333
No 27
>KOG0915|consensus
Probab=98.85 E-value=2.8e-07 Score=97.80 Aligned_cols=254 Identities=19% Similarity=0.189 Sum_probs=179.1
Q ss_pred HHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHH
Q psy10471 12 VQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRAT 91 (318)
Q Consensus 12 i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~a 91 (318)
.|.|+.-.|..+.||+++|+|.+..+==|++++||.+-..-=+.+.......+ -+.+-.|+.+|+.-+.+..-+||.++
T Consensus 981 f~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y~neIl~eLL~~lt~kewRVReas 1059 (1702)
T KOG0915|consen 981 FGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEYLNEILDELLVNLTSKEWRVREAS 1059 (1702)
T ss_pred hHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHHHHHHHHHHHHhccchhHHHHHHH
Confidence 46677777899999999999999988889999999998877777776555443 35566688889988888888899999
Q ss_pred HHHHHHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCc----------ccchHHHHHH
Q psy10471 92 VNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSP----------FTVLPALMNE 149 (318)
Q Consensus 92 v~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p----------~~vip~L~~~ 149 (318)
+-++..+-.. .|. +++.++++...|=...+|.+...+...++ ..|.+ ..++|.|+..
T Consensus 1060 clAL~dLl~g-~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1060 CLALADLLQG-RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDE 1138 (1702)
T ss_pred HHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc
Confidence 9999887753 232 23444444443333467777644443333 23332 1688888774
Q ss_pred hcCC-cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC----------------------------------
Q psy10471 150 YRVP-ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR---------------------------------- 194 (318)
Q Consensus 150 ~~d~-~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~---------------------------------- 194 (318)
--.. -.++++..++.+..+.|+-|...+||++.++|.+.++...-
T Consensus 1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmm 1218 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMM 1218 (1702)
T ss_pred CcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHH
Confidence 3322 36899999999999999999999999999999999988211
Q ss_pred ----------CH--------------------HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHH
Q psy10471 195 ----------DL--------------------VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAF 244 (318)
Q Consensus 195 ----------~~--------------------~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~i 244 (318)
|. .-|...+..|..++..+ +.+.--...+++.-++++++|-++.+|+..
T Consensus 1219 eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP~sgKll~al~~g~~dRNesv~kaf 1297 (1702)
T KOG0915|consen 1219 ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTPYSGKLLRALFPGAKDRNESVRKAF 1297 (1702)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCcchhHHHHHHhhccccccHHHHHHH
Confidence 10 11122233333333332 111112334567777899999999999999
Q ss_pred HHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 245 MDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 245 i~~i~~i~~alG~~~~~~~vl~~l 268 (318)
-.+++-++..=.++.+..++...+
T Consensus 1298 AsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1298 ASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Confidence 999999999999988777766666
No 28
>KOG1242|consensus
Probab=98.85 E-value=5.2e-07 Score=88.72 Aligned_cols=236 Identities=16% Similarity=0.226 Sum_probs=170.8
Q ss_pred hHHHHHHhhcCCCCHHH-HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--
Q psy10471 29 NLVEIIEHGLVDEQQKV-QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-- 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~v-R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-- 105 (318)
.++..+....+|.++.. |+++.-+.-......|+.. .+++.+++..++.-..|....||++|..+.-.+...+.++
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV 252 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF-EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV 252 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence 46666778888876554 5566666666666666544 4677888888888888888889999999999999889887
Q ss_pred -HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCCcchHHHHHHHHHH-----------
Q psy10471 106 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALS----------- 166 (318)
Q Consensus 106 -~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~~~~v~~~vl~al~----------- 166 (318)
.+++.++..+....-+....+++.++..++ |.| -.++|-+...+.|..++++++..+++.
T Consensus 253 K~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI 331 (569)
T KOG1242|consen 253 KLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI 331 (569)
T ss_pred hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH
Confidence 568888888876533566666676765443 223 278899999999988888876666665
Q ss_pred -------------------HHHHHHcc-ccccch-----hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH
Q psy10471 167 -------------------FLFEYIGE-MGKDYI-----YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA 221 (318)
Q Consensus 167 -------------------~i~~~lg~-~~~~yl-----~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~ 221 (318)
.+.+++|. .|+.|+ ..++|.+.+-+.+++...++.++..++-++.-+. ....
T Consensus 332 ~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve---Dp~~ 408 (569)
T KOG1242|consen 332 QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE---DPKD 408 (569)
T ss_pred HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc---CHHH
Confidence 23333333 355555 3477888888888888888889999988877662 2233
Q ss_pred HHHHHHhhhhccc----CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc
Q psy10471 222 LTHLLNYVWPNIF----ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH 270 (318)
Q Consensus 222 i~hll~~l~~~i~----d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~ 270 (318)
+..+++-++|.++ +..|++|....-+++.+..-+|.+.| +-+.|-+++
T Consensus 409 lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e 460 (569)
T KOG1242|consen 409 LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSE 460 (569)
T ss_pred HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHH
Confidence 3444444444443 46699999999999999999999888 888888865
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.82 E-value=2.1e-07 Score=103.27 Aligned_cols=275 Identities=10% Similarity=0.037 Sum_probs=187.6
Q ss_pred hhhHHHHHHHHHHHhccC--cCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH---HHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCA--ILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM---RICFELLE 78 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~--~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~---~il~~Ll~ 78 (318)
+..++++++-|+. |.. -..-+ ...+|.+.++|+..++.+|+.|+++||+++....+ .+... ..+..|++
T Consensus 463 Q~~A~~~L~nLa~--~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q---ir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 463 QEYAVALLAILTD--EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED---IRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH---HHHHHHHCCCHHHHHH
Confidence 4466777777765 331 11111 25788888999999999999999999999974322 11211 34556778
Q ss_pred HhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----------cccchHHHHH
Q psy10471 79 LLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----------PFTVLPALMN 148 (318)
Q Consensus 79 ~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----------p~~vip~L~~ 148 (318)
+|++....+|..|.+++..+... +..+.++.++..|..++......+..+++.+...+. -...+|.|.+
T Consensus 538 LL~sgd~~~q~~Aa~AL~nLi~~-~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 538 LLKNGGPKGQEIAAKTLTKLVRT-ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhc-cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 88998888999999999999863 444566778887876655555555666664422111 1258999999
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH--H
Q psy10471 149 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--L 225 (318)
Q Consensus 149 ~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--l 225 (318)
.++.++.++++.++.++..+|.+-.+.+..-+ ...+|.+...+++.+..+++.++++++.++.... .+....+.+ .
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~v~~Ga 695 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSYAAEDA 695 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCC
Confidence 99999999999999999999974332222222 3578889999999999999999999999986432 111111122 3
Q ss_pred HHhhhhcccCCChHHHHHHHHHHHHHHHHc------ChhhHHHhHHHHhccccccchH-HHHHHHHHh
Q psy10471 226 LNYVWPNIFETSPHLVQAFMDAVEGLRVAL------GPVRILQYVLQGLFHPARKVRD-VYWKIYNSL 286 (318)
Q Consensus 226 l~~l~~~i~d~~~~vr~~ii~~i~~i~~al------G~~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~ 286 (318)
.+.+...+.+.+.+++..++.+++.++..- +.+...+.+...+-..+.+.|+ .-|.+++-.
T Consensus 696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 696 IKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 444567777788999999999998887644 2233456666666666666666 455544333
No 30
>KOG1824|consensus
Probab=98.81 E-value=7.9e-07 Score=90.77 Aligned_cols=264 Identities=14% Similarity=0.188 Sum_probs=172.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHH-HHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH---HHH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVG-RIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD---VLA 109 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG-~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~---~l~ 109 (318)
+++++...+-..|.-|.+-|- .+-..+- .++-.....++..+|+.|.|.+..|+..|++++|.++++++.+. ..+
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi-~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSI-KLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhh-hccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 455555656667766665443 2322211 11124455567778899999999999999999999999998763 355
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCC----c--chHHHHHHHHHHHHHHHHcccc
Q psy10471 110 TLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVP----E--LNVQNGVLKALSFLFEYIGEMG 176 (318)
Q Consensus 110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~----~--~~v~~~vl~al~~i~~~lg~~~ 176 (318)
.|..++-....|.|.....++-.+-.+.-| .+|.+.+...+.+. + ..++-.++.-+.-+...+|.-.
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll 168 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLL 168 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccC
Confidence 566665555668888888877654333333 26777777776652 2 2356667777777776677655
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471 177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256 (318)
Q Consensus 177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG 256 (318)
.+|-..+.-.+.--+...-..+|+-+..++++++..++..-+.+.++|++.-+-+. ..+.-..+.+.++.+++.+-|
T Consensus 169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~---~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNR---TQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCC---CchHHHHHHHHHHHHHHHHhc
Confidence 55443333333333333347899999999999999997555678999987776444 556667778999999999999
Q ss_pred hhh--HHHhHHHHhc-------cccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471 257 PVR--ILQYVLQGLF-------HPARKVRDVYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 257 ~~~--~~~~vl~~l~-------~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
-.+ -.+.+.|.+. .+...+|+.---.+...-.+.++++.||-|.+
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei 299 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI 299 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence 733 3334444442 23335666555566665566667777776544
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.79 E-value=7.6e-07 Score=88.63 Aligned_cols=247 Identities=20% Similarity=0.187 Sum_probs=177.7
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~ 105 (318)
.+...++.+...+.+.++.+|..++.+|.+++...++.+. .....++ -+..+++..+|..+++.+..+++.-.-.
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~---~l~~~~d~~Ir~~~l~lL~~l~~~~n~~ 338 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILF---FLLYDDDPSIRKKALDLLYKLANESNVK 338 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHH---HHHCSSSHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhh---eecCCCChhHHHHHHHHHhhcccccchh
Confidence 4567888889999999999999999999999987643331 2222222 2224778889999999999998866666
Q ss_pred HHHHHHHHhhccc-chhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471 106 DVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA 182 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~-~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ 182 (318)
.+++.|++.++.. +...|...+.+|+.+++.+.+. ..+..+++.++.....+...++..+..+...-.. --..
T Consensus 339 ~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~----~~~~ 414 (526)
T PF01602_consen 339 EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE----LREK 414 (526)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT----THHH
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh----hhHH
Confidence 7899999998533 5678999999999999888653 7889999999988778887788888777754221 1234
Q ss_pred hHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHH
Q psy10471 183 VTPLLEDALMD-RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRIL 261 (318)
Q Consensus 183 iiP~l~~~l~~-~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~ 261 (318)
++..+.+.+.+ .++.+++.+++.+|.-+..... .+ ....++..+.....+++++++..++.++-.+....+.....
T Consensus 415 ~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~ 491 (526)
T PF01602_consen 415 ILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ 491 (526)
T ss_dssp HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH
Confidence 56666766664 5688999999999998777742 11 45566666677777788899999999999999998864444
Q ss_pred HhHHHHh----c--cccccchH---HHHHHHH
Q psy10471 262 QYVLQGL----F--HPARKVRD---VYWKIYN 284 (318)
Q Consensus 262 ~~vl~~l----~--~~a~~~r~---~~w~i~~ 284 (318)
+-+++.+ - +.+-.||+ -||++++
T Consensus 492 ~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 492 NEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 4444444 4 23334555 5666664
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.76 E-value=6.2e-07 Score=79.77 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=126.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH----HHHHHhhhchHHHHHHHHHHHHHHHhhhCH-
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF----ELLELLKAHKKAIRRATVNTFGYIAKAIGP- 104 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~----~Ll~~L~d~~~~vR~~av~~lg~la~~igp- 104 (318)
+.+.+-..-.+.++..|..|+..|-.++.........+.+.+.+. .+...++|....+-+.|+.+++.++..+|.
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 333443334778899999999999999987622222455555544 455566666666888899999888887774
Q ss_pred ---H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-cccc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHHc---c
Q psy10471 105 ---H--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-PFTV-LPALMNEYRVPELNVQNGVLKALSFLFEYIG---E 174 (318)
Q Consensus 105 ---~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-p~~v-ip~L~~~~~d~~~~v~~~vl~al~~i~~~lg---~ 174 (318)
+ .+++.|++.+.+.....|..+..++..+...|. +..+ .+.+....++.++.++..+++.+..++...| .
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 3 467778888887767788999999999999888 4555 7777778889999999999999999998888 3
Q ss_pred cccc--chhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 175 MGKD--YIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 175 ~~~~--yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
.+.. +++.+.|.+...+.|+++.+|+.+-.++..+.....
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3333 357899999999999999999999999988866653
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.70 E-value=3.1e-07 Score=81.68 Aligned_cols=186 Identities=19% Similarity=0.191 Sum_probs=119.9
Q ss_pred hhhhHHHHHHHHHHHhc-----cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMG-----CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE 78 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g-----~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~ 78 (318)
+|..++..+..+..-.. ..+.+.+++++..+...+.|....|-..|+.+++.++...+..+ .+....++..|++
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~-~~~~~~~l~~Ll~ 101 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF-EPYADILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHHHHH
Confidence 57788888888887441 12455566666788889999899999999999999999877655 3344556667888
Q ss_pred HhhhchHHHHHHHHHHHHHHHhhhC-HHHH-HHHHHHhhcccchhhHHHHHHHHHHHHhhcC---c----c----cchHH
Q psy10471 79 LLKAHKKAIRRATVNTFGYIAKAIG-PHDV-LATLLNNLKVQERQNRVCTTVAIAIVAETCS---P----F----TVLPA 145 (318)
Q Consensus 79 ~L~d~~~~vR~~av~~lg~la~~ig-p~~~-l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~---p----~----~vip~ 145 (318)
.+.+.++.+|.+|..++-.+.+.++ +..+ ...+....+....+.|..++..+..+....+ + . .+.+.
T Consensus 102 ~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~ 181 (228)
T PF12348_consen 102 KLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKA 181 (228)
T ss_dssp GGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHH
Confidence 8899888999999999999999988 4455 5666666666666899999988877665554 1 1 48888
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHH
Q psy10471 146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA 190 (318)
Q Consensus 146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~ 190 (318)
+...+.|+++++|..+-+++..+.+..|......+..+-|..++.
T Consensus 182 l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~ 226 (228)
T PF12348_consen 182 LVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKY 226 (228)
T ss_dssp HHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--------------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhccccc
Confidence 999999999999999999999998888877666665555555443
No 34
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.66 E-value=1.9e-07 Score=86.01 Aligned_cols=281 Identities=16% Similarity=0.145 Sum_probs=177.1
Q ss_pred CCchhhhHHHHHHHHHHHhccCcCCChHhH-----HHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHH
Q psy10471 1 MSSDKNLGIKIVQQIAILMGCAILPHLKNL-----VEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVS---AREWMR 71 (318)
Q Consensus 1 ~~~~r~~~l~~i~~La~~~g~~~~P~l~~l-----~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~ 71 (318)
+|.|=+..+.+.-..-..+..+-.|+++++ +|.+++.+ ..++.+.+-.|+|+|-.+|+++...-. -..-.|
T Consensus 81 ~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVP 160 (526)
T COG5064 81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVP 160 (526)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchH
Confidence 355556667777777777777788888764 67799999 457788899999999999997763111 123345
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC---HH----HHHHHHHHhhcccch--h-hHHHHHHHHHHHHhhcC--c
Q psy10471 72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIG---PH----DVLATLLNNLKVQER--Q-NRVCTTVAIAIVAETCS--P 139 (318)
Q Consensus 72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig---p~----~~l~~Ll~~Lk~~~~--~-~R~~~~~ai~~i~~~~~--p 139 (318)
++. ++|.+.++.||..++|++|.+|-.-. .| -++..+++.|..... . .|..| =.++.++..-. |
T Consensus 161 lfi---qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~T-WtLSNlcRGknP~P 236 (526)
T COG5064 161 LFI---QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT-WTLSNLCRGKNPPP 236 (526)
T ss_pred HHH---HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhH-HHHHHhhCCCCCCC
Confidence 555 66699999999999999999885322 23 246778887763322 1 22222 12222332222 2
Q ss_pred -----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 140 -----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 140 -----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
.+++|.|.+....-++++---++-|++++...-......-+. .+.+.+..++.+.+..+..-+...++.++.+-
T Consensus 237 ~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 379999999887777888888999999988743323323333 47789999999998888777777766654432
Q ss_pred cCCCc-hhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh-----hHHHhHHHHhcc-----ccccchHHHH
Q psy10471 214 YGFGC-EDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFH-----PARKVRDVYW 280 (318)
Q Consensus 214 ~~~~~-~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~-----~~~~~vl~~l~~-----~a~~~r~~~w 280 (318)
+. -..++. .++.+.+.+..+-..+|+.++=+|..|.. |.- .+--.+.|.+.| +=+.-+|+-|
T Consensus 317 ---D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACW 391 (526)
T COG5064 317 ---DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW 391 (526)
T ss_pred ---ccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 21 112221 23333233333555788877766655421 221 122334444444 2233458999
Q ss_pred HHHHHhhccc
Q psy10471 281 KIYNSLYIGG 290 (318)
Q Consensus 281 ~i~~~~~~~~ 290 (318)
.+.|+.|++.
T Consensus 392 AisNatsgg~ 401 (526)
T COG5064 392 AISNATSGGL 401 (526)
T ss_pred HHHhhhcccc
Confidence 9999998663
No 35
>KOG1824|consensus
Probab=98.65 E-value=2.5e-06 Score=87.24 Aligned_cols=227 Identities=18% Similarity=0.228 Sum_probs=154.2
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC-CCCCC----------------
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRG-PEYVS---------------- 65 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~-~~~i~---------------- 65 (318)
+.|+.++-.+||+.. |.+ .-+-+++-..+++.++.++..|+.||..|||.++.+. ..|+.
T Consensus 834 ~ikvfa~LslGElgr--~~~-~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLL 910 (1233)
T KOG1824|consen 834 SIKVFALLSLGELGR--RKD-LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLL 910 (1233)
T ss_pred hHHHHHHhhhhhhcc--CCC-CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHH
Confidence 467777778888777 323 3344566668899999999999999999999999733 21110
Q ss_pred ----------------hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHH
Q psy10471 66 ----------------AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA 129 (318)
Q Consensus 66 ----------------~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~a 129 (318)
.+....|+..|++.....+...|-..-+++|.++ .+.|..+++.|-..++.+.-.+|..++-|
T Consensus 911 LhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~-l~epesLlpkL~~~~~S~a~~~rs~vvsa 989 (1233)
T KOG1824|consen 911 LHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV-LIEPESLLPKLKLLLRSEASNTRSSVVSA 989 (1233)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH-hCChHHHHHHHHHHhcCCCcchhhhhhhe
Confidence 1111122222222222234456777777888877 47888888888888887766788887777
Q ss_pred HH-HHHhhcCcc-----cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH------------
Q psy10471 130 IA-IVAETCSPF-----TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL------------ 191 (318)
Q Consensus 130 i~-~i~~~~~p~-----~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l------------ 191 (318)
+. .|.+.+-|- .-+--++..+|||+++|++.++.++.+..+.=..-.++-++.++|.+-.=-
T Consensus 990 vKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeM 1069 (1233)
T KOG1824|consen 990 VKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEM 1069 (1233)
T ss_pred eeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcc
Confidence 75 467777652 455678889999999999999999999887633334566677777765432
Q ss_pred ------hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC
Q psy10471 192 ------MDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET 236 (318)
Q Consensus 192 ------~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~ 236 (318)
.|.....|+.+...+=.+-.++- +.-+ +.|+++.+-.++.|.
T Consensus 1070 GPFKH~VDdgLd~RKaaFEcmytLLdscl--d~~d-it~Fl~~~~~GL~Dh 1117 (1233)
T KOG1824|consen 1070 GPFKHTVDDGLDLRKAAFECMYTLLDSCL--DRLD-ITEFLNHVEDGLEDH 1117 (1233)
T ss_pred cCccccccchHHHHHHHHHHHHHHHHhhh--hhcc-HHHHHHHHHhhcchh
Confidence 13346899999998888877763 3222 346667666666554
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.61 E-value=4.2e-06 Score=83.41 Aligned_cols=225 Identities=17% Similarity=0.191 Sum_probs=147.8
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 103 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig 103 (318)
.+++.+.+...|.++++.||+-++++|+++++....... -.+. +..++..+.+++.+|...|.+++..+++.-.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l---~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL---LPLIIQCLRDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH---HHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence 678888899999999999999999999999875432111 1333 3445677799999999999999999986322
Q ss_pred HH-HH-----HHHHHHhhcccchhhHHHHHHHHHHHH-------hhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHH
Q psy10471 104 PH-DV-----LATLLNNLKVQERQNRVCTTVAIAIVA-------ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFE 170 (318)
Q Consensus 104 p~-~~-----l~~Ll~~Lk~~~~~~R~~~~~ai~~i~-------~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~ 170 (318)
-. .+ ...|.+.+..++...|.-+...+..++ +.|....+++.+++.+++.+.-++..+++.+..+.+
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 11 22 444444444323334444544444333 334445699999999999888889999999999988
Q ss_pred HHccccccchh--hhHHHHHHHHhcCCHHHH------HHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHH
Q psy10471 171 YIGEMGKDYIY--AVTPLLEDALMDRDLVHR------QTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQ 242 (318)
Q Consensus 171 ~lg~~~~~yl~--~iiP~l~~~l~~~~~~~R------~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~ 242 (318)
......|+. .+++.+.+.+.+.+..-| -......+.++.. .....-.....++..+...+...++..+.
T Consensus 232 --~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~ 308 (503)
T PF10508_consen 232 --TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIRE 308 (503)
T ss_pred --ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence 444567884 488988888864432111 1222333334332 11111233344555554444457788999
Q ss_pred HHHHHHHHHHHHcCh
Q psy10471 243 AFMDAVEGLRVALGP 257 (318)
Q Consensus 243 ~ii~~i~~i~~alG~ 257 (318)
.++++++.++...-.
T Consensus 309 ~A~dtlg~igst~~G 323 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEG 323 (503)
T ss_pred HHHHHHHHHhCCHHH
Confidence 999999999877633
No 37
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.61 E-value=1.8e-06 Score=95.97 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=157.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH----
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---- 105 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---- 105 (318)
.+|.++.+|++.++.+|+.|+++||.++....+....--=...+..|.++|+.+++.+|+.|+++++.++.. .++
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~i 525 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRAC 525 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 577888999999999999999999999875442111000011333455777888889999999999998852 221
Q ss_pred ----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc-c-cc
Q psy10471 106 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG-K-DY 179 (318)
Q Consensus 106 ----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~-~-~y 179 (318)
.+++.|++.|+..+.+.+..++.++..+..... ...++.+...+..++.+++..++.++..++...+... . .-
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 357789999998777777778888876654332 3466888898988888999889999988876433210 0 00
Q ss_pred --hhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471 180 --IYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256 (318)
Q Consensus 180 --l~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG 256 (318)
-+.-+|.+.+++++.+...++.|+.++..+...-+.....-......+-++..+...+.++++.+.-++..+.....
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 13578999999999999999999999988876443111111111223333455556778899999999999987433
No 38
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=98.51 E-value=4.3e-07 Score=76.76 Aligned_cols=146 Identities=16% Similarity=0.247 Sum_probs=97.9
Q ss_pred cCCCh--HhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHH--
Q psy10471 23 ILPHL--KNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY-- 97 (318)
Q Consensus 23 ~~P~l--~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~-- 97 (318)
+.||. ++|++.+...++.+ ++.+|+.+++.+|.|..--++.- +....-... ..-.+.+.......+...+.
T Consensus 2 v~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~--k~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ 77 (160)
T PF11865_consen 2 VDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKH--KSIQKSLDS--KSSENSNDESTDISLPMMGISP 77 (160)
T ss_pred cchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH--hcccccCCc--cccccccccchhhHHhhccCCC
Confidence 46777 58999999999875 59999999999999876433211 000000000 00011111122222222222
Q ss_pred HHhhhCHHHHHHHHHHhhcccch-hhHHHHHHHHHHHH----hhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHH
Q psy10471 98 IAKAIGPHDVLATLLNNLKVQER-QNRVCTTVAIAIVA----ETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFE 170 (318)
Q Consensus 98 la~~igp~~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~----~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~ 170 (318)
-.+..=|..++.+|++.|++++. ++|..+++|++.|+ ..|.|| +++|.+++..+.++.+.++.+++.++.+..
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12223345789999999999988 68889999998776 457787 999999999999888999999999988876
Q ss_pred HH
Q psy10471 171 YI 172 (318)
Q Consensus 171 ~l 172 (318)
..
T Consensus 158 iv 159 (160)
T PF11865_consen 158 IV 159 (160)
T ss_pred Hh
Confidence 43
No 39
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.50 E-value=3.2e-08 Score=68.17 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRI 56 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~l 56 (318)
-|+.++.+||+++...+..+.|++++++|.+.+.|+|+++.||.+|+++||+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 48899999999888777789999999999999999999999999999999975
No 40
>KOG1240|consensus
Probab=98.48 E-value=3.3e-06 Score=88.21 Aligned_cols=225 Identities=16% Similarity=0.105 Sum_probs=164.7
Q ss_pred hhhHHHHHHHHHHHhcc----CcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCC------------------
Q psy10471 5 KNLGIKIVQQIAILMGC----AILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGP------------------ 61 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~----~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~------------------ 61 (318)
|.+|+.+|.++-..... +..=+.+-|+|.+..++.| ....||.+=+.+|+++|..+.
T Consensus 479 ra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~ 558 (1431)
T KOG1240|consen 479 RATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDP 558 (1431)
T ss_pred HHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 56777777776554432 3444566788888888888 567899999999999986432
Q ss_pred C-----CCC----hhhHHHHHH-HHHHHhhhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHH
Q psy10471 62 E-----YVS----AREWMRICF-ELLELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTT 127 (318)
Q Consensus 62 ~-----~i~----~~~~~~il~-~Ll~~L~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~ 127 (318)
+ ..+ ...+...+. ....+|.|+++-||++-+++++-++...|-. .++.+|+..|+|.+.+.|.+..
T Consensus 559 nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 559 NSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHH
Confidence 0 000 122233332 2345667888889999999999999988864 5799999999999989999999
Q ss_pred HHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHH
Q psy10471 128 VAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAC 203 (318)
Q Consensus 128 ~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~ 203 (318)
+.|.-++--.|+ -.++|-+.+-+.|+|..|-..++++++.++|. |.-=|+++.+++-...=++-+++..+|+.+.
T Consensus 639 dsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 639 DSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred hhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence 988655443343 26899999999999999999999999999985 6555677766666666666799999999999
Q ss_pred HHHHHHhhhhcCCCch-hHHHHHHHhhh
Q psy10471 204 ATIKHMALGVYGFGCE-DALTHLLNYVW 230 (318)
Q Consensus 204 ~~i~~la~~~~~~~~~-~~i~hll~~l~ 230 (318)
..|..++......+.. -.+.-+.||+.
T Consensus 718 ~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 718 GIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 9998888877433321 23444555554
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.48 E-value=2.1e-05 Score=78.38 Aligned_cols=245 Identities=19% Similarity=0.153 Sum_probs=164.1
Q ss_pred hhhHHHHHHHHHHHhccCcCC-ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhH-H-HHHHHHHHHhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILP-HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW-M-RICFELLELLK 81 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P-~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~-~-~il~~Ll~~L~ 81 (318)
|..+++.|+.++......... .=+++++.++..++|++..|...|+++|..++..... ...+ . .....|-+.++
T Consensus 94 r~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~---~~~l~~~~~~~~L~~l~~ 170 (503)
T PF10508_consen 94 RRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG---LEQLFDSNLLSKLKSLMS 170 (503)
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh---HHHHhCcchHHHHHHHHh
Confidence 566777777776532221111 2256899999999999999999999999999974332 1111 0 01233334445
Q ss_pred hchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc--C----cccchHHHH
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC--S----PFTVLPALM 147 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~--~----p~~vip~L~ 147 (318)
.++..+|.-+++.+..+++ ..|. .+++.+++.|+++|-=.+..+...+..+++.- . ...+++.+.
T Consensus 171 ~~~~~vR~Rv~el~v~i~~-~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 171 QSSDIVRCRVYELLVEIAS-HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLS 249 (503)
T ss_pred ccCHHHHHHHHHHHHHHHh-cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHH
Confidence 4566788888888888875 4443 26888889999877666667777777666421 1 136888888
Q ss_pred HHhcCCcch-----HH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-----
Q psy10471 148 NEYRVPELN-----VQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF----- 216 (318)
Q Consensus 148 ~~~~d~~~~-----v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~----- 216 (318)
+.+.+.+.+ +. -+.++.++.++..-...+..-+|.++..+.+.+...|+..+..|.++++.++....|.
T Consensus 250 ~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~ 329 (503)
T PF10508_consen 250 NLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQ 329 (503)
T ss_pred HHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 887654322 22 3444555555543122333444677777777788899999999999999998877642
Q ss_pred CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 217 GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 217 ~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
...+.+.|.+..+...+.....++|...++++..+-.
T Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 330 KQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred hcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 2245667777777777777778999999999999854
No 42
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.39 E-value=0.0001 Score=69.39 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=44.5
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l 108 (318)
..++.+...+.|+++.+|..+...+|++... + .+..+.+.+.|..+.+|..|+.++|. +|....+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~--------~---av~~l~~~l~d~~~~vr~~a~~aLg~----~~~~~a~ 107 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE--------E---AVPLLRELLSDEDPRVRDAAADALGE----LGDPEAV 107 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH--------H---HHHHHHHHhcCCCHHHHHHHHHHHHc----cCChhHH
Confidence 3444455555555555666666555544331 1 22223344455555556665555443 2223344
Q ss_pred HHHHHhhc-ccchhhHHHHHHHHHHHH
Q psy10471 109 ATLLNNLK-VQERQNRVCTTVAIAIVA 134 (318)
Q Consensus 109 ~~Ll~~Lk-~~~~~~R~~~~~ai~~i~ 134 (318)
+.|+..|. +++..+|...+.+++.+.
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 55555554 344455555555555443
No 43
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.35 E-value=3.4e-05 Score=72.62 Aligned_cols=170 Identities=22% Similarity=0.303 Sum_probs=99.0
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHhhh
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-d~~~~vR~~av~~lg~la~~i 102 (318)
..-....+|.+...+.|.++.||..|+.+||.+-. + +-.+. +++.++ |.+..||..+.+++|.+..
T Consensus 69 ~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~-~a~~~---li~~l~~d~~~~vR~~aa~aL~~~~~-- 135 (335)
T COG1413 69 ELGSEEAVPLLRELLSDEDPRVRDAAADALGELGD-------P-EAVPP---LVELLENDENEGVRAAAARALGKLGD-- 135 (335)
T ss_pred hhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------h-hHHHH---HHHHHHcCCcHhHHHHHHHHHHhcCc--
Confidence 44557888999999999999999999999887653 2 22222 334446 6888999999999998664
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471 103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA 182 (318)
Q Consensus 103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ 182 (318)
...+..++..++++.... .+.+ + .++...++..+..++..+.. +.
T Consensus 136 --~~a~~~l~~~l~~~~~~~---a~~~----------------~----~~~~~~~r~~a~~~l~~~~~----------~~ 180 (335)
T COG1413 136 --ERALDPLLEALQDEDSGS---AAAA----------------L----DAALLDVRAAAAEALGELGD----------PE 180 (335)
T ss_pred --hhhhHHHHHHhccchhhh---hhhh----------------c----cchHHHHHHHHHHHHHHcCC----------hh
Confidence 445777777777644211 0000 0 11111334444443332211 33
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471 183 VTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG 250 (318)
Q Consensus 183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~ 250 (318)
.+|.+...+.+.+..+|..++..++.+.... .++...+.....+++..+|...+.+++.
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 4455566666666666666666665553332 1222333444555666666655555443
No 44
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.34 E-value=4.7e-06 Score=77.03 Aligned_cols=252 Identities=19% Similarity=0.201 Sum_probs=144.2
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHhhhCHH-
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK--KAIRRATVNTFGYIAKAIGPH- 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~--~~vR~~av~~lg~la~~igp~- 105 (318)
.-+|+++++|.+.+..||+.++|+||.+|..+..+-++----..+..+|+++.++. -++-|.+.|++..+...=.|.
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 46899999999999999999999999999654421111000113344555555533 366677888888877654442
Q ss_pred ------HHHHHHHHhhcccchhhHHHHHHHHHHHHhh-----------------------------------cC------
Q psy10471 106 ------DVLATLLNNLKVQERQNRVCTTVAIAIVAET-----------------------------------CS------ 138 (318)
Q Consensus 106 ------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~-----------------------------------~~------ 138 (318)
+.++.|.+.+...+-.+=+-..=||+++++. .|
T Consensus 237 ~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 3444444444322211111111122222100 00
Q ss_pred --cc------cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471 139 --PF------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 139 --p~------~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~l 209 (318)
.+ .++++|-..+..|-.++++.+|-.++.|..+-......-+ ..++|.+.+++...+...|+-|++++...
T Consensus 317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01 3566676677777678888888888877653222222223 35889999999999999999999999887
Q ss_pred hhhhcCCCchhHHHHHHHhhhhccc--------C-CChHHHHHHHHHHHHHHHHcChh---------hHHHhHH-HH-h-
Q psy10471 210 ALGVYGFGCEDALTHLLNYVWPNIF--------E-TSPHLVQAFMDAVEGLRVALGPV---------RILQYVL-QG-L- 268 (318)
Q Consensus 210 a~~~~~~~~~~~i~hll~~l~~~i~--------d-~~~~vr~~ii~~i~~i~~alG~~---------~~~~~vl-~~-l- 268 (318)
..++. +.-|. +.|++..-+ + .+..+.+..+++++.+-+.-..+ .+.-||- .| |
T Consensus 397 tsgg~--~~PD~----iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd 470 (526)
T COG5064 397 TSGGL--NRPDI----IRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMD 470 (526)
T ss_pred hcccc--CCchH----HHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHH
Confidence 76654 22222 222222111 1 23346666678887776544333 2444443 11 1
Q ss_pred -cc-c-cccchHHHHHHHHHh
Q psy10471 269 -FH-P-ARKVRDVYWKIYNSL 286 (318)
Q Consensus 269 -~~-~-a~~~r~~~w~i~~~~ 286 (318)
.| . ++.-+++|-+.|+-.
T Consensus 471 ~I~~~Q~s~n~~iy~KAYsII 491 (526)
T COG5064 471 AIHGLQDSVNRTIYDKAYSII 491 (526)
T ss_pred HHHHhhhccccHHHHHHHHHH
Confidence 22 1 123457888877655
No 45
>KOG0211|consensus
Probab=98.34 E-value=3.7e-05 Score=79.14 Aligned_cols=276 Identities=16% Similarity=0.142 Sum_probs=193.5
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|.++-+-+|.+|.+.+. .--...++|.+..+.+|+...||.+|.++++.+.+...... ...-.+...+++...|..
T Consensus 254 r~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 254 RRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGS 329 (759)
T ss_pred HHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChh
Confidence 45666677777777665 22234678888999999999999999999999998655432 233334445667778888
Q ss_pred HHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCcc----cchHHHHHHhcC
Q psy10471 85 KAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSPF----TVLPALMNEYRV 152 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p~----~vip~L~~~~~d 152 (318)
.++|..+-+.+.-+.+.+||. .......+.++++....|.+++.-....+ ..|++. .++|..-...-|
T Consensus 330 ~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d 409 (759)
T KOG0211|consen 330 WRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD 409 (759)
T ss_pred HHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc
Confidence 889999999999999999984 34666777778777778888877776544 334453 456877777788
Q ss_pred CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhc
Q psy10471 153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPN 232 (318)
Q Consensus 153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~ 232 (318)
..+.++.+...-++.....+| ...-++.+.|.+...+++.++.+|.+....+..+-......|.+-.-+..++-+...
T Consensus 410 ~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 410 NALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred ccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 888888877776666655555 244557788999999999999999999976644433222225554555555554444
Q ss_pred ccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc-cccccchHHHHHHHHHh
Q psy10471 233 IFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF-HPARKVRDVYWKIYNSL 286 (318)
Q Consensus 233 i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~-~~a~~~r~~~w~i~~~~ 286 (318)
..+..-.+|..+++.+-..+..+|.++|-+.+-++.. ....+|.++..++-+++
T Consensus 488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 3344567899999999999999998888777666663 23334445444444333
No 46
>KOG0212|consensus
Probab=98.34 E-value=1.3e-05 Score=78.14 Aligned_cols=237 Identities=15% Similarity=0.123 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|..|+..+...+...|....+|+..++|-+++.+.|++.+||.-||.++=.+|..+...+ ...+..|+..|.++..|..
T Consensus 60 rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd 138 (675)
T KOG0212|consen 60 RKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSD 138 (675)
T ss_pred ccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCc
Confidence 336777777777778887777999999999999999999999999999999998665443 3455556666666667766
Q ss_pred HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHH
Q psy10471 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKA 164 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~a 164 (318)
..||..| ++++.|++..-.++-+ ++.--..+|-|-..+.+-++..|..+++=
T Consensus 139 ~~V~~~a--------------eLLdRLikdIVte~~~--------------tFsL~~~ipLL~eriy~~n~~tR~flv~W 190 (675)
T KOG0212|consen 139 QNVRGGA--------------ELLDRLIKDIVTESAS--------------TFSLPEFIPLLRERIYVINPMTRQFLVSW 190 (675)
T ss_pred cccccHH--------------HHHHHHHHHhcccccc--------------ccCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 6666432 3444444443322211 00001345555555556678889888888
Q ss_pred HHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHH
Q psy10471 165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAF 244 (318)
Q Consensus 165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~i 244 (318)
+..+-..-+.++..|++.+.+.+.+.+.|....+|+..-.+++..-.-++.....--...+.+.+.+....+++.++..+
T Consensus 191 l~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~a 270 (675)
T KOG0212|consen 191 LYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKA 270 (675)
T ss_pred HHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHH
Confidence 87665555667889999999999999999999999766665554333322111110223345566777777899999999
Q ss_pred HHHHHHHHHHcChhh--HHHhHHHHhcc
Q psy10471 245 MDAVEGLRVALGPVR--ILQYVLQGLFH 270 (318)
Q Consensus 245 i~~i~~i~~alG~~~--~~~~vl~~l~~ 270 (318)
+.=|..+...-|.+. +.+-++.+++.
T Consensus 271 l~Wi~efV~i~g~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 271 LTWIQEFVKIPGRDLLLYLSGILTAILP 298 (675)
T ss_pred HHHHHHHhcCCCcchhhhhhhhhhhccc
Confidence 999999988888876 44455555543
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.31 E-value=4.7e-07 Score=62.27 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471 43 QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 98 (318)
Q Consensus 43 ~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~l 98 (318)
|.||++|+++||++++..++.. .+....++..|++.|+|+++.||..|++++|+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999998777665 345555666777888998889999999999975
No 48
>PTZ00429 beta-adaptin; Provisional
Probab=98.27 E-value=0.00045 Score=71.60 Aligned_cols=236 Identities=13% Similarity=0.068 Sum_probs=159.3
Q ss_pred hhhHHH-HHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 5 KNLGIK-IVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 5 r~~~l~-~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
|..+++ +|..+.. |.++.+...+++. .+...+..+|+-+-..+-.+++.-++ ...-.+..+.+.++|+
T Consensus 49 kk~alKkvIa~mt~--G~DvS~LF~dVvk----~~~S~d~elKKLvYLYL~~ya~~~pe-----lalLaINtl~KDl~d~ 117 (746)
T PTZ00429 49 KKAAVKRIIANMTM--GRDVSYLFVDVVK----LAPSTDLELKKLVYLYVLSTARLQPE-----KALLAVNTFLQDTTNS 117 (746)
T ss_pred HHHHHHHHHHHHHC--CCCchHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccChH-----HHHHHHHHHHHHcCCC
Confidence 333443 5555444 7777665555554 55666788899888888888764332 2222455677888889
Q ss_pred hHHHHHHHHHHHHHHHhh-hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----cccchHHHHHHhcCCcchHH
Q psy10471 84 KKAIRRATVNTFGYIAKA-IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----PFTVLPALMNEYRVPELNVQ 158 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~-igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~~vip~L~~~~~d~~~~v~ 158 (318)
++-+|..|+++++.|... +-+ .++..+.+.+.+.+--+|..++.++..+..... ....++.+...+.|.++.|.
T Consensus 118 Np~IRaLALRtLs~Ir~~~i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv 196 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRVSSVLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVA 196 (746)
T ss_pred CHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHH
Confidence 999999999999875531 111 256666777777666899999999988765432 23567888888899999999
Q ss_pred HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCCh
Q psy10471 159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSP 238 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~ 238 (318)
..++.++..+.+.-+..+ ......+..+.+.+.+.+...+-...+++..-.+ ..++...++++.+.+.+...++
T Consensus 197 ~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P-----~~~~e~~~il~~l~~~Lq~~N~ 270 (746)
T PTZ00429 197 SNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP-----SDKESAETLLTRVLPRMSHQNP 270 (746)
T ss_pred HHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHhcCCCH
Confidence 999999999876433221 2234455556666677888777777777644211 2233456788888888888888
Q ss_pred HHHHHHHHHHHHHHHHcChh
Q psy10471 239 HLVQAFMDAVEGLRVALGPV 258 (318)
Q Consensus 239 ~vr~~ii~~i~~i~~alG~~ 258 (318)
.|.-.++.++-.+.....++
T Consensus 271 AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 271 AVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHhcCcCCHH
Confidence 77777777776665554444
No 49
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.25 E-value=5.6e-06 Score=62.05 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=61.9
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471 31 VEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA 109 (318)
Q Consensus 31 ~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~ 109 (318)
+|.++..+ +|+++.+|..++++||++.+ ++..+. |.+.++|+++.||++|++++|.++ ..+.++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~---L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~ 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPA---LIELLKDEDPMVRRAAARALGRIG----DPEAIP 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHH---HHHHHTSSSHHHHHHHHHHHHCCH----HHHTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHH---HHHHHcCCCHHHHHHHHHHHHHhC----CHHHHH
Confidence 45677777 88999999999999994432 344444 446669999999999999999875 355777
Q ss_pred HHHHhhcccch-hhHHHHHHHHH
Q psy10471 110 TLLNNLKVQER-QNRVCTTVAIA 131 (318)
Q Consensus 110 ~Ll~~Lk~~~~-~~R~~~~~ai~ 131 (318)
.|.+.+++.+. .+|...+.+++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 77777765433 45666666553
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=98.20 E-value=0.00028 Score=73.15 Aligned_cols=72 Identities=11% Similarity=0.179 Sum_probs=58.0
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~ 100 (318)
.++.+++.+...+.|.+|.||++|+.++..+-...++.+....|.+.+. ++|.|+++.|...|+.++-.+.+
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~---~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLV---ELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHH---HHhcCCCccHHHHHHHHHHHHHH
Confidence 3455667778888999999999999999999887776653456776655 55689999999999999988865
No 51
>KOG2259|consensus
Probab=98.14 E-value=0.00015 Score=72.16 Aligned_cols=253 Identities=14% Similarity=0.122 Sum_probs=163.9
Q ss_pred CcCCChHh-HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 22 AILPHLKN-LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 22 ~~~P~l~~-l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~-il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
.-.+|-++ +...++.+..|++++||..|+.++=++.++.. . .. +.....+.++|....||.+|++.+-..+
T Consensus 190 ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g 262 (823)
T KOG2259|consen 190 SSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--L-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWG 262 (823)
T ss_pred CcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc--c-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34555554 44448889999999999999999999888322 1 12 2234557789999999999999988888
Q ss_pred hhh-CHH-----------HHHHHHHHhhcccchhhHHHHHHHHHHH---Hhh----------------------------
Q psy10471 100 KAI-GPH-----------DVLATLLNNLKVQERQNRVCTTVAIAIV---AET---------------------------- 136 (318)
Q Consensus 100 ~~i-gp~-----------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i---~~~---------------------------- 136 (318)
+.. +|. ++...+-..++|-+-++|+.++.++|.+ ++.
T Consensus 263 n~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~ 342 (823)
T KOG2259|consen 263 NRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY 342 (823)
T ss_pred hcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH
Confidence 765 442 3455566677777778999999998743 111
Q ss_pred --c-----------Cc-------------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHH
Q psy10471 137 --C-----------SP-------------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA 190 (318)
Q Consensus 137 --~-----------~p-------------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~ 190 (318)
+ .| ....-++..-+.|+=.+|+++++.++.....+ ...|-..-+-++.+.
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s----sP~FA~~aldfLvDM 418 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS----SPGFAVRALDFLVDM 418 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHH
Confidence 0 01 11222455555665567888888887766543 134555666778899
Q ss_pred HhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC--hhhHHHhHHHHh
Q psy10471 191 LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG--PVRILQYVLQGL 268 (318)
Q Consensus 191 l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG--~~~~~~~vl~~l 268 (318)
++|....+|-.+..++..++...+ =.++. ++.++..+-|.++++|..+-+.++.....-- -+.....++.-+
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~l~--i~eeq----l~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L 492 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVHLA--IREEQ----LRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL 492 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhe--ecHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999988887753 22333 4444777888999999988887776532211 122233333333
Q ss_pred -ccccccchHHHHHHHHHhhcccccc
Q psy10471 269 -FHPARKVRDVYWKIYNSLYIGGQDA 293 (318)
Q Consensus 269 -~~~a~~~r~~~w~i~~~~~~~~~~~ 293 (318)
..| ..|+..|+-+......|...
T Consensus 493 ~kyP--qDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 493 GKYP--QDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred hhCC--CCcHHHHHHHHHHhccChhh
Confidence 112 34566677555544444333
No 52
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.05 E-value=0.00045 Score=67.00 Aligned_cols=150 Identities=18% Similarity=0.085 Sum_probs=92.3
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 30 LVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 30 l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l 108 (318)
.++.+++.| .|+.+.|+.+++.++..... + . .+..|++.|.|....||.++.++||. +++....
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~---~-----~---~~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~a~ 119 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED---A-----L---DLRSVLAVLQAGPEGLCAGIQAALGW----LGGRQAE 119 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC---h-----H---HHHHHHHHhcCCCHHHHHHHHHHHhc----CCchHHH
Confidence 455566667 45667777776666642211 1 0 24445666677777788888888774 4445566
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHH
Q psy10471 109 ATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188 (318)
Q Consensus 109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~ 188 (318)
..|...|++++-.+|..+..+++..... ..+.+...++|+++.++..++.++..+-. ...+|.+.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~~-----~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~ 184 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRHD-----PGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLR 184 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccC-----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHH
Confidence 6777777766656766666655543221 23456666677777787777777664332 23345566
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q psy10471 189 DALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 189 ~~l~~~~~~~R~~a~~~i~~l 209 (318)
..+.+.++.+|+.++..+..+
T Consensus 185 ~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHc
Confidence 667777788887777766444
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.04 E-value=1.3e-05 Score=62.85 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=77.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
+++.+.+.++|.++.+|..++.+|+.++...++... .+. .++..+++.++++++.+|+.++++++.++..-.+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-- 83 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQ--AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-- 83 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH--
Confidence 677788888999999999999999999987543221 111 34555667778888899999999999999743221
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471 108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLF 169 (318)
Q Consensus 108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~ 169 (318)
...+. ...++|.+.+.+++++.+++..++.++..++
T Consensus 84 ~~~~~--------------------------~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 KLIVL--------------------------EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHH--------------------------HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 00000 0135666777777777777777777777654
No 54
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.00 E-value=0.0011 Score=64.62 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=138.7
Q ss_pred cCcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHH
Q psy10471 21 CAILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYI 98 (318)
Q Consensus 21 ~~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~l 98 (318)
+...|...+++..++....+ .++..|.++++.++-++-..+. ...+..++..+++.. .......|..++..++-+
T Consensus 181 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi 257 (415)
T PF12460_consen 181 DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSISSSEDSELRPQALEILIWI 257 (415)
T ss_pred ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHH
Confidence 34667888899998887655 4589999999999999976332 124445555455444 334556777888888777
Q ss_pred Hhhh----CHH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhh--------cC----c------c-cchHHHHHHhcCC
Q psy10471 99 AKAI----GPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAET--------CS----P------F-TVLPALMNEYRVP 153 (318)
Q Consensus 99 a~~i----gp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~--------~~----p------~-~vip~L~~~~~d~ 153 (318)
++++ .|. ++++.|+..|.+ ......++++++++... ++ + | .++|.+++.++..
T Consensus 258 ~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 258 TKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA 335 (415)
T ss_pred HHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc
Confidence 6653 243 577888888776 34566788999865421 11 1 2 7999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 154 ELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 154 ~~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
+.+.+...+.|++.+.+.+.. ...++++.++|.+.+.+.-.|..++..+.+++..+...
T Consensus 336 ~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 888999999999999999865 46789999999999999988898888888877665443
No 55
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.99 E-value=0.0015 Score=63.44 Aligned_cols=194 Identities=16% Similarity=0.096 Sum_probs=132.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA 109 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~ 109 (318)
.+..++..+.|.++.||.+++++||.+- ...+.+. |+..|++.++.+|+.++.++|.... +|+ .
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~---L~~~L~~~~p~vR~aal~al~~r~~--~~~---~ 150 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPW---LEPLLAASEPPGRAIGLAALGAHRH--DPG---P 150 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHH---HHHHhcCCChHHHHHHHHHHHhhcc--ChH---H
Confidence 3788899999999999999999999532 2344445 4466699899999999998888543 343 3
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHH
Q psy10471 110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED 189 (318)
Q Consensus 110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~ 189 (318)
.+.+.|++++..+|...+.+++.+... ..+|.|...++|.+++|+..++.++..+ |. +.-.+.+..
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~----~a~~~L~~al~d~~~~VR~aA~~al~~l----G~------~~A~~~l~~ 216 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR----LSESTLRLYLRDSDPEVRFAALEAGLLA----GS------RLAWGVCRR 216 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc----cchHHHHHHHcCCCHHHHHHHHHHHHHc----CC------HhHHHHHHH
Confidence 566667788889999999999877543 5667788889999999999988888543 32 233355555
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc
Q psy10471 190 ALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF 269 (318)
Q Consensus 190 ~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~ 269 (318)
+....+...++.++..++.. |....+..+ ...+.+ +.+|..++.+++. +|.....+.++..+-
T Consensus 217 ~~~~~g~~~~~~l~~~lal~-------~~~~a~~~L----~~ll~d--~~vr~~a~~AlG~----lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 217 FQVLEGGPHRQRLLVLLAVA-------GGPDAQAWL----RELLQA--AATRREALRAVGL----VGDVEAAPWCLEAMR 279 (410)
T ss_pred HHhccCccHHHHHHHHHHhC-------CchhHHHHH----HHHhcC--hhhHHHHHHHHHH----cCCcchHHHHHHHhc
Confidence 55555555555544444222 222333333 333333 3488877777774 577777777777664
Q ss_pred c
Q psy10471 270 H 270 (318)
Q Consensus 270 ~ 270 (318)
+
T Consensus 280 d 280 (410)
T TIGR02270 280 E 280 (410)
T ss_pred C
Confidence 3
No 56
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.96 E-value=0.00045 Score=59.34 Aligned_cols=112 Identities=15% Similarity=0.235 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchh
Q psy10471 42 QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ 121 (318)
Q Consensus 42 ~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~ 121 (318)
||.||.+++.++|.++-+-+.. .+.|.+.+. ..|+|+++.||+.|+..+.++... |. +|...
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~--ve~~~~~l~---~~L~D~~~~VR~~al~~Ls~Li~~-d~----------ik~k~-- 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL--VEPYLPNLY---KCLRDEDPLVRKTALLVLSHLILE-DM----------IKVKG-- 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH--HHhHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHc-Cc----------eeehh--
Confidence 6889999999999999876654 355666655 777999999999999999987742 21 11110
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc
Q psy10471 122 NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD 193 (318)
Q Consensus 122 ~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~ 193 (318)
.++..++..+.|++++++..+...+..+.+..+ ..-+...+|-+...+.+
T Consensus 63 -------------------~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~---~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 63 -------------------QLFSRILKLLVDENPEIRSLARSFFSELLKKRN---PNIIYNNFPELISSLNN 112 (178)
T ss_pred -------------------hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHhC
Confidence 112225555678888888888777777776532 23334444444544443
No 57
>KOG1820|consensus
Probab=97.92 E-value=0.0011 Score=69.11 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=149.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLE-LLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~-~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
+-+-+..-+-|..|.-|..|+..+..+.+..+ ... +-+..++..++. .++|.+..+-..|...+..|++.+++...
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~--~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV--KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccc--cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 33445555667789999999999999988666 221 222223333333 35777888888899999999998887411
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471 108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187 (318)
Q Consensus 108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l 187 (318)
... -.+.|.++..+.+--.+++.++++++..++.+ .-+..+.+.+
T Consensus 332 -----------~~~------------------~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I 376 (815)
T KOG1820|consen 332 -----------KYA------------------KNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAI 376 (815)
T ss_pred -----------HHH------------------HhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHH
Confidence 000 04566677777777788888899999888873 2456788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhhc-CCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471 188 EDALMDRDLVHRQTACATIKHMALGVY-GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ 266 (318)
Q Consensus 188 ~~~l~~~~~~~R~~a~~~i~~la~~~~-~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~ 266 (318)
..++++.++..|......+.+...... .+-+..++..+.+.+...+.|.+.+||.++.+++..+-..+|.+.+..++-+
T Consensus 377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~ 456 (815)
T KOG1820|consen 377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKD 456 (815)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 999999999999998888877777765 3334567777788888999999999999999999999999999888776644
Q ss_pred H
Q psy10471 267 G 267 (318)
Q Consensus 267 ~ 267 (318)
.
T Consensus 457 ~ 457 (815)
T KOG1820|consen 457 L 457 (815)
T ss_pred h
Confidence 3
No 58
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.89 E-value=2.1e-05 Score=47.49 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADR 59 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~ 59 (318)
|+|.++..++|++|.||.+|+.+||++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999874
No 59
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.88 E-value=0.00072 Score=58.05 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
-|..++.++|.|+.--+..+.| .+|.+...|+|++|.||+.|+..|.++..... +.+ -..++..++..+.|+
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~--ik~--k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM--IKV--KGQLFSRILKLLVDE 75 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc--eee--hhhhhHHHHHHHcCC
Confidence 4778999999999965444444 55666678899999999999999999987532 211 122335566777999
Q ss_pred hHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 84 KKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~igp~~~ 107 (318)
++.||..|...|..+...-+|..+
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHH
Confidence 999999999999999987677643
No 60
>KOG4224|consensus
Probab=97.86 E-value=0.00056 Score=64.06 Aligned_cols=253 Identities=16% Similarity=0.120 Sum_probs=159.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH----
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---- 105 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---- 105 (318)
+|.+..+++..++.||+-|..+||.++-... -.+-...=++++..|.+++.|..++++-.|--+++.++....-.
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 4667888888899999999999999984221 11101222346666778889988889988889999988754321
Q ss_pred --HHHHHHHHhhcccchhhHHHHHHHHHHHHh---hcCc---ccchHHHHHHhcCCc-chHHHHHHHHHHHHHHHHcccc
Q psy10471 106 --DVLATLLNNLKVQERQNRVCTTVAIAIVAE---TCSP---FTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMG 176 (318)
Q Consensus 106 --~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~---~~~p---~~vip~L~~~~~d~~-~~v~~~vl~al~~i~~~lg~~~ 176 (318)
--++.+++.|+++....=...+-.|-.|+- +-++ ...+-+|.+.++-.+ .++|-.++..+-....+-....
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~ 369 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV 369 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh
Confidence 126778888876543321111222211221 1111 245666888886544 3577777777766665433333
Q ss_pred ccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH-HHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 177 KDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT-HLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 177 ~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~-hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
+.+. ..-+|.+..++.|.+..+|......++.++..=. .++.... .+.|.++|-.++++.+||.+...++..++.-
T Consensus 370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~--~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN--DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc--cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 3333 3578999999999999999888888877765432 3333332 2677788889999999999888887766654
Q ss_pred cCh------------hhHHHhHHHHhc-cccccchH-HHHHHHHHh
Q psy10471 255 LGP------------VRILQYVLQGLF-HPARKVRD-VYWKIYNSL 286 (318)
Q Consensus 255 lG~------------~~~~~~vl~~l~-~~a~~~r~-~~w~i~~~~ 286 (318)
+.. +-+..|+..-+- |..+ +|. .-|++..-+
T Consensus 448 v~~YarviEawd~P~~gi~g~L~Rfl~S~~~t-f~hia~wTI~qLl 492 (550)
T KOG4224|consen 448 VEHYARVIEAWDHPVQGIQGRLARFLASHELT-FRHIARWTIQQLL 492 (550)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHH-HHHHHHHHHHHHH
Confidence 432 235555555442 3332 222 668876544
No 61
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.85 E-value=0.00019 Score=55.42 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHH
Q psy10471 45 VQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRV 124 (318)
Q Consensus 45 vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~ 124 (318)
.|+.++.+|+.+|...+..+ .+.+..|+..+++.+.|++.+||..|++++..+++..+.. +++.+-
T Consensus 2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~------------ 67 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFN------------ 67 (97)
T ss_pred chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHH------------
Confidence 48999999999999888765 5677778888999999999999999999999999866543 333221
Q ss_pred HHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHH
Q psy10471 125 CTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV 161 (318)
Q Consensus 125 ~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~v 161 (318)
.+.++|.+...|++++|+.++
T Consensus 68 ----------------~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 68 ----------------EIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred ----------------HHHHHHHHHHcCCchhHHHHH
Confidence 334447777788888888765
No 62
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00017 Score=70.75 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=115.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLL 112 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~-L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll 112 (318)
+.+++.|.++-.|.+++-+++----++|... ++..||.. .+|.++.|||+|+-++|-++ +..++++...+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn~~-------vv~~lLh~avsD~nDDVrRAAViAlGfvc--~~D~~~lv~tv 591 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGNLG-------VVSTLLHYAVSDGNDDVRRAAVIALGFVC--CDDRDLLVGTV 591 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCcch-------hHhhhheeecccCchHHHHHHHHheeeeE--ecCcchhhHHH
Confidence 5567788889999999998885444555533 44555555 58888999999999999887 56566666767
Q ss_pred Hhhcccch-hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471 113 NNLKVQER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL 191 (318)
Q Consensus 113 ~~Lk~~~~-~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l 191 (318)
..|..... ++|..++.|+|+-+-.-+....+..|-..+.|+..-||.+++-+++.|.--..++..|-+..|.-.|.+++
T Consensus 592 elLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI 671 (926)
T COG5116 592 ELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI 671 (926)
T ss_pred HHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence 77765444 79999999999876555555666667777789998999999889888887667777777777888888888
Q ss_pred hcC
Q psy10471 192 MDR 194 (318)
Q Consensus 192 ~~~ 194 (318)
.+.
T Consensus 672 ~~K 674 (926)
T COG5116 672 VDK 674 (926)
T ss_pred hhh
Confidence 654
No 63
>KOG4653|consensus
Probab=97.84 E-value=0.0015 Score=67.04 Aligned_cols=220 Identities=17% Similarity=0.231 Sum_probs=154.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRG--PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~--~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l 108 (318)
...-+..+.|+.+.+|-.|+..+..+++.- .+.+ .--.++...++.|+|.+.-|=-.|++.+..+++ +-|..++
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~---~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-vy~e~il 804 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLI---QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-VYPEDIL 804 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhh---hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-hcchhhH
Confidence 344556677878889999999999999833 2322 223355557788899888899999999999997 5777788
Q ss_pred HHHHHhhcccch----hhHHHHHHHHHHHHhhcCc----c--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccccc
Q psy10471 109 ATLLNNLKVQER----QNRVCTTVAIAIVAETCSP----F--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKD 178 (318)
Q Consensus 109 ~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~~~~p----~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~ 178 (318)
+-|......... ..|.-|-+||+.+...-|+ | .++..+|...|+|+-..|.+.+..++.++..+.....+
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 887775532222 2455566888766544443 3 78889999999998888888888888888877655566
Q ss_pred chhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCch----------hHHHHHHHhhhhcccCCChHHHHHHHHH
Q psy10471 179 YIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCE----------DALTHLLNYVWPNIFETSPHLVQAFMDA 247 (318)
Q Consensus 179 yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~----------~~i~hll~~l~~~i~d~~~~vr~~ii~~ 247 (318)
++.++.-.+..+.+ ++...+|++|+.++..+-.+. |++ |...-+++|+-. ++++.++..+..+
T Consensus 885 ~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t---g~dlLpilr~~l~Dl~~tl~~~vr~---~~dd~~klhaql~ 958 (982)
T KOG4653|consen 885 FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT---GEDLLPILRLLLIDLDETLLSYVRQ---HDDDGLKLHAQLC 958 (982)
T ss_pred HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHH
Confidence 88888888887776 556899999999998875554 321 222223333311 2556677788888
Q ss_pred HHHHHHHcChhhH
Q psy10471 248 VEGLRVALGPVRI 260 (318)
Q Consensus 248 i~~i~~alG~~~~ 260 (318)
++.+-.++..+.+
T Consensus 959 leei~a~l~n~~~ 971 (982)
T KOG4653|consen 959 LEEIQAALENDDD 971 (982)
T ss_pred HHHHHHHHHhccc
Confidence 8888777654433
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.76 E-value=0.013 Score=54.53 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=123.5
Q ss_pred HHHHHHHHhccCcCCCh--HhHHHHH-HhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHH
Q psy10471 11 IVQQIAILMGCAILPHL--KNLVEII-EHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAI 87 (318)
Q Consensus 11 ~i~~La~~~g~~~~P~l--~~l~~~l-~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~v 87 (318)
+.+.+-+.....+.|.. ..++.-+ .|.+++.++.+|+.|+++||-+|--.... ..+..+++. ..++.....+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~--a~~~l~l~~---~~~~~~~~~v 80 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL--AKEHLPLFL---QALQKDDEEV 80 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHH---HHHHhCCHHH
Confidence 34444443334566644 4888776 59999999999999999999998644432 466677765 4445567789
Q ss_pred HHHHHHHHHHHHhhhCH---------------HHHHHHHHHhhcccchhhHHHHHHHHHHHH--hhcCc-ccchHHHHHH
Q psy10471 88 RRATVNTFGYIAKAIGP---------------HDVLATLLNNLKVQERQNRVCTTVAIAIVA--ETCSP-FTVLPALMNE 149 (318)
Q Consensus 88 R~~av~~lg~la~~igp---------------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~--~~~~p-~~vip~L~~~ 149 (318)
|..|++++.-+.-.-|+ ..++..+.+.+..++...|..+++++..+. ....+ ..++-.|+-.
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 99999998776655442 245666777777666578888888888654 44555 6888889998
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHcccc---ccch-hhhHHHHHHHHhcC
Q psy10471 150 YRVPELNVQNGVLKALSFLFEYIGEMG---KDYI-YAVTPLLEDALMDR 194 (318)
Q Consensus 150 ~~d~~~~v~~~vl~al~~i~~~lg~~~---~~yl-~~iiP~l~~~l~~~ 194 (318)
|=+|+.+-....-|+++.+|+..-..- ...+ ..++|.+..+++..
T Consensus 161 yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 161 YFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 988865555567788888888754321 1222 44677777777543
No 65
>KOG2259|consensus
Probab=97.75 E-value=0.0018 Score=64.73 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=153.6
Q ss_pred CchhhhHHHHHHHHHHHhccCcCCC--------------hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCC-
Q psy10471 2 SSDKNLGIKIVQQIAILMGCAILPH--------------LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVS- 65 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~~~~P~--------------l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~- 65 (318)
..+|+.+.+.++.++.-.+..++.+ -+.+.......++|....||.+|++.+.-.+...+ +.-.
T Consensus 193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3567777776666655333222222 12345556788999999999999999999988763 1111
Q ss_pred ---hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH----HHHHH-------------------------
Q psy10471 66 ---AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL----ATLLN------------------------- 113 (318)
Q Consensus 66 ---~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l----~~Ll~------------------------- 113 (318)
.+-....+..+.+.++|-+-.||..|-+.||.+.. ...+-+. ..+|.
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 34556677778888899888899999999987554 2211111 11222
Q ss_pred -----------------------------hhcccchhhHHHHHHHHHHHHhhcC--cccchHHHHHHhcCCcchHHHHHH
Q psy10471 114 -----------------------------NLKVQERQNRVCTTVAIAIVAETCS--PFTVLPALMNEYRVPELNVQNGVL 162 (318)
Q Consensus 114 -----------------------------~Lk~~~~~~R~~~~~ai~~i~~~~~--p~~vip~L~~~~~d~~~~v~~~vl 162 (318)
.|.|+=+.+|.+++.++..++-.-- +...+..|+..+.|+-..|+.-++
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2233333556666666655553322 236777899999999999998899
Q ss_pred HHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc---hhHHHHHHHhhhhcccCCChH
Q psy10471 163 KALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC---EDALTHLLNYVWPNIFETSPH 239 (318)
Q Consensus 163 ~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~---~~~i~hll~~l~~~i~d~~~~ 239 (318)
.++..|...+.. =...++.+...+.|.+..+|+.+-.+++.. +..+. +-.+.|++.-+- -+|.
T Consensus 432 ~aL~~Is~~l~i-----~eeql~~il~~L~D~s~dvRe~l~elL~~~----~~~d~~~i~m~v~~lL~~L~-----kyPq 497 (823)
T KOG2259|consen 432 FALTMISVHLAI-----REEQLRQILESLEDRSVDVREALRELLKNA----RVSDLECIDMCVAHLLKNLG-----KYPQ 497 (823)
T ss_pred HHHHHHHHHhee-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHhh-----hCCC
Confidence 999998887331 145668889999999999999999988543 22222 234555544432 3344
Q ss_pred HHHHHHHHHHHHHHHcC
Q psy10471 240 LVQAFMDAVEGLRVALG 256 (318)
Q Consensus 240 vr~~ii~~i~~i~~alG 256 (318)
=|..+..++..|+.-=|
T Consensus 498 Drd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 498 DRDEILRCMGRIGQNHR 514 (823)
T ss_pred CcHHHHHHHHHHhccCh
Confidence 45566666666655443
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.75 E-value=0.00024 Score=52.98 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=67.6
Q ss_pred HHHHHHh-hhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC
Q psy10471 74 FELLELL-KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV 152 (318)
Q Consensus 74 ~~Ll~~L-~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d 152 (318)
..|++.| +++++.+|..+++++|. ++..++++.|...+++++-.+|..++.+++.++. ..++|.|.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~----~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE----LGDPEAIPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC----CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHHHTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHcC
Confidence 3466777 77889999999999994 4556789999999988888999999999987653 3689999999977
Q ss_pred C-cchHHHHHHHHHH
Q psy10471 153 P-ELNVQNGVLKALS 166 (318)
Q Consensus 153 ~-~~~v~~~vl~al~ 166 (318)
+ +..++..+.++++
T Consensus 74 ~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 74 DDDEVVREAAAEALG 88 (88)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcC
Confidence 5 4556888887764
No 67
>KOG2956|consensus
Probab=97.72 E-value=0.0016 Score=62.69 Aligned_cols=168 Identities=13% Similarity=0.144 Sum_probs=118.0
Q ss_pred cCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471 23 ILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 101 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ 101 (318)
-..|-.+|+-.+.+.|.| .++..|.-|++-|+.++++.+... ...-+-.+..+|+.-+|.++.|=++|.+..-.....
T Consensus 323 Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l-~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 323 WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL-FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 366889999999999999 678889999999999999877533 222222334577888887776666666655555556
Q ss_pred hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-----c--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc-
Q psy10471 102 IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-----P--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG- 173 (318)
Q Consensus 102 igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-----p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg- 173 (318)
..|..-+..+...+...+++.-+++....-.+++... + -.++|.+++.|...+..||+.++=++-.+..-+|
T Consensus 402 ~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 402 HLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred hCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH
Confidence 7777555554444443444333333333333443322 2 3789999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHH
Q psy10471 174 EMGKDYIYAVTPLLEDAL 191 (318)
Q Consensus 174 ~~~~~yl~~iiP~l~~~l 191 (318)
.+++||+.++...-.+++
T Consensus 482 ~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 482 EEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HhhhhHhhhccHHHHHHH
Confidence 789999987655544444
No 68
>KOG2956|consensus
Probab=97.72 E-value=0.0052 Score=59.35 Aligned_cols=193 Identities=13% Similarity=0.111 Sum_probs=109.1
Q ss_pred HhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471 35 EHGLVD-EQQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATL 111 (318)
Q Consensus 35 ~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~L 111 (318)
+..+++ +...-|..|+.-|-.+..-+..-+ | +.+-.|+..+++.|.| .+..+|..|++.++.+... .|..+
T Consensus 292 l~~~~g~e~a~~~k~alsel~~m~~e~sfsv-Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~-Q~~~l---- 365 (516)
T KOG2956|consen 292 LKEISGSERASERKEALSELPKMLCEGSFSV-WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN-QPARL---- 365 (516)
T ss_pred HHhccCccchhHHHHHHHHHHHHHHccchhH-HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh-chHhh----
Confidence 333444 355668888775544433222222 5 4566788888999999 6778999999999887752 22211
Q ss_pred HHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH-ccccccchhhhHHHHHHH
Q psy10471 112 LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYI-GEMGKDYIYAVTPLLEDA 190 (318)
Q Consensus 112 l~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l-g~~~~~yl~~iiP~l~~~ 190 (318)
.+ .+-.||.. ++..-+|...++-+.+.++......++ +..| +..+.|.++.
T Consensus 366 ----~D-------stE~ai~K-------------~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt- 417 (516)
T KOG2956|consen 366 ----FD-------STEIAICK-------------VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC---IVNISPLILT- 417 (516)
T ss_pred ----hc-------hHHHHHHH-------------HHHHHhCCchhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhc-
Confidence 11 01111111 334445555555555555544444433 3222 2334455554
Q ss_pred HhcCCHHHHHHHHHHHHHHhhhhcCCCchh---HHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHH
Q psy10471 191 LMDRDLVHRQTACATIKHMALGVYGFGCED---ALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQG 267 (318)
Q Consensus 191 l~~~~~~~R~~a~~~i~~la~~~~~~~~~~---~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~ 267 (318)
.|...-..+...+..+.+.+ ..|+ .+..+.|-+++.-...+..||++++.++-+|...+|.+.|.||+-+.
T Consensus 418 ---~D~~~~~~~iKm~Tkl~e~l---~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 418 ---ADEPRAVAVIKMLTKLFERL---SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred ---CcchHHHHHHHHHHHHHhhc---CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 33222233344455554444 2332 22333333333333467899999999999999999999999998765
No 69
>KOG0212|consensus
Probab=97.72 E-value=0.0043 Score=61.06 Aligned_cols=208 Identities=12% Similarity=0.108 Sum_probs=148.2
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh---hCCCCCChhhHHHHHHHHHHHh
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIAD---RGPEYVSAREWMRICFELLELL 80 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~---~~~~~i~~~~~~~il~~Ll~~L 80 (318)
-|...++-|.-|-.+-+-.|..|++++++-+...|.|+++.||..+=.+++++-. +.+..++..+..++ +...+
T Consensus 183 tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~v---lv~~l 259 (675)
T KOG0212|consen 183 TRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINV---LVPHL 259 (675)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhh---ccccc
Confidence 4566666666666655667999999999999999999999999999999998653 34444444444444 55788
Q ss_pred hhchHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhcccch-hhHHHH---HHHHHHHH-hhc-C---cc-cchH
Q psy10471 81 KAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQER-QNRVCT---TVAIAIVA-ETC-S---PF-TVLP 144 (318)
Q Consensus 81 ~d~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~~~-~~R~~~---~~ai~~i~-~~~-~---p~-~vip 144 (318)
.++++.++.-|+.-+-...+.-|+. .++..+++.+-+.+. ..+.+. -.-++.+. +.. + -+ .++.
T Consensus 260 ~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~ 339 (675)
T KOG0212|consen 260 QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIE 339 (675)
T ss_pred cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHH
Confidence 8888889988888887777643432 344455555543333 222221 11122221 111 1 12 5666
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 145 ~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
.+.+.+.+...+.+-++++=+..++...+...-.+.+.+-+.+...+.|++..+-..+..++++++..-+
T Consensus 340 vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 340 VLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 7777778888888999999999999998888878889999999999999999888888888888776654
No 70
>KOG4653|consensus
Probab=97.69 E-value=0.0016 Score=66.72 Aligned_cols=182 Identities=17% Similarity=0.164 Sum_probs=141.6
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhh------hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHH
Q psy10471 73 CFELLELLKAHKKAIRRATVNTFGYIAKA------IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL 146 (318)
Q Consensus 73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~------igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L 146 (318)
+...+.-+.|+...+|..++..+..+.+. +-++.++...+++|++++.=++..+..++..+++. +|-.++|-+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~e~il~dL 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YPEDILPDL 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cchhhHHHH
Confidence 44445566777888999999999998873 34568899999999988865666677777777777 688999988
Q ss_pred HHHhcCC----cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch---
Q psy10471 147 MNEYRVP----ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE--- 219 (318)
Q Consensus 147 ~~~~~d~----~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~--- 219 (318)
...|... .++.+--|-+++..+...+|+.+..|...++-.+..-++++|..+|..+...++.+.....+.+.+
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 8877432 234445577999999999999999999999999999999888899988888888887777544333
Q ss_pred hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh
Q psy10471 220 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV 258 (318)
Q Consensus 220 ~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~ 258 (318)
+.+..+++.... |.+..+|.+++..+..+-...|.+
T Consensus 888 ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 888 EVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred HHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccchh
Confidence 444445555433 578899999999999999999854
No 71
>KOG2062|consensus
Probab=97.65 E-value=0.0008 Score=67.89 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=104.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHhhhCHHHHHHH
Q psy10471 32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIGPHDVLAT 110 (318)
Q Consensus 32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~-L~d~~~~vR~~av~~lg~la~~igp~~~l~~ 110 (318)
+++.++++|.+|..|+.++-+++--=.++|..- .+..||.. .+|.++.|||+|+-++|-+.- =+|. ..+.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk-------air~lLh~aVsD~nDDVrRaAVialGFVl~-~dp~-~~~s 592 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGNNK-------AIRRLLHVAVSDVNDDVRRAAVIALGFVLF-RDPE-QLPS 592 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCchh-------hHHHhhcccccccchHHHHHHHHHheeeEe-cChh-hchH
Confidence 456677899999999999999986444555432 33334444 488899999999999998772 3454 4445
Q ss_pred HHHhhcccch-hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHH
Q psy10471 111 LLNNLKVQER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED 189 (318)
Q Consensus 111 Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~ 189 (318)
.+..|...-. ++|+.++.|+|+-+-.-|-...+.-|--...|+..-||.+++=++..|.--..+...|-...+.-.+.+
T Consensus 593 ~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~k 672 (929)
T KOG2062|consen 593 TVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEK 672 (929)
T ss_pred HHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 5555543323 799999999998654434334455455555799999999988888877655454444555555555666
Q ss_pred HHhcC
Q psy10471 190 ALMDR 194 (318)
Q Consensus 190 ~l~~~ 194 (318)
++.+.
T Consensus 673 vI~dK 677 (929)
T KOG2062|consen 673 VINDK 677 (929)
T ss_pred Hhhhh
Confidence 66433
No 72
>KOG1059|consensus
Probab=97.64 E-value=0.0038 Score=63.04 Aligned_cols=207 Identities=13% Similarity=0.149 Sum_probs=126.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHH---
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH--- 105 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~--- 105 (318)
.|.+.+.|.|++|+|..||..-+-.+|...+ +|+ .+.|+++.|+ .+ .+-|+-.-.++-||.+.. +.|-
T Consensus 183 FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---~LAP~ffkll---ttSsNNWmLIKiiKLF~aLtp-lEPRLgK 255 (877)
T KOG1059|consen 183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---QLAPLFYKLL---VTSSNNWVLIKLLKLFAALTP-LEPRLGK 255 (877)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---cccHHHHHHH---hccCCCeehHHHHHHHhhccc-cCchhhh
Confidence 3446788999999999999999999998776 444 6778888555 66 678888888999998764 4443
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHH-HHh---hcCc--c---cchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccc
Q psy10471 106 DVLATLLNNLKVQERQNRVCTTVAIAI-VAE---TCSP--F---TVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEM 175 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~~-i~~---~~~p--~---~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~ 175 (318)
.+++.|.+..+...- -...+.++.+ ++- .+.| + ++.-.=++.+ .|.+++.+=--+-|++.+.++...
T Consensus 256 KLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~- 332 (877)
T KOG1059|consen 256 KLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK- 332 (877)
T ss_pred hhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-
Confidence 455555554442110 0112223321 111 1111 1 1222222333 567788886677777877776332
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
.+..---.+.+++.|.|.++|-.|.+++..++..= .--+.+..++.++... +..+.|..++..|=.||.+=
T Consensus 333 ---~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk---Nl~eIVk~LM~~~~~a---e~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 333 ---AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK---NLMEIVKTLMKHVEKA---EGTNYRDELLTRIISICSQS 403 (877)
T ss_pred ---HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhhhh
Confidence 22333355788889999999999999997775432 1224445566665333 33467776666666666554
Q ss_pred C
Q psy10471 256 G 256 (318)
Q Consensus 256 G 256 (318)
.
T Consensus 404 n 404 (877)
T KOG1059|consen 404 N 404 (877)
T ss_pred h
Confidence 4
No 73
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.59 E-value=0.027 Score=52.69 Aligned_cols=183 Identities=16% Similarity=0.176 Sum_probs=128.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH----
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRG--PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP---- 104 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~--~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp---- 104 (318)
+.-.+..+.|.+...|.+++..+-++...- ++++ ......++..+++.+|..+..-+..|.+.++-++=.+|+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v-~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFV-EDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 445667778888999999999999887532 2333 355667777778888775445567788888888877663
Q ss_pred H----HHHHHHHHhhcccch--hhHHHHHHHHHHHHhhcCc--c---cchHHHHHHhc------CC---------cchHH
Q psy10471 105 H----DVLATLLNNLKVQER--QNRVCTTVAIAIVAETCSP--F---TVLPALMNEYR------VP---------ELNVQ 158 (318)
Q Consensus 105 ~----~~l~~Ll~~Lk~~~~--~~R~~~~~ai~~i~~~~~p--~---~vip~L~~~~~------d~---------~~~v~ 158 (318)
. .+.+.|.+.+++.+. ..|...+.++++++.-|+. . ..|..+-.+|. +. +..++
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 1 455666667776654 5777778888876544332 1 12233322221 11 24578
Q ss_pred HHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 159 NGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
.+++++-+.+.-.+.. .+..++...+|.|...+...+..+|.+|+..|+-+-+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 8999999998877765 3556778889999999999999999999999988877664
No 74
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.53 E-value=0.00055 Score=53.53 Aligned_cols=111 Identities=19% Similarity=0.058 Sum_probs=82.3
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE 219 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~ 219 (318)
.++|.+...+++.+.+++...+.++..++.........++. .++|.+.+++.+.++.++..++.+++.++.... ...+
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHH
Confidence 47788888888888889999999999988753223333444 799999999999999999999999999976542 1111
Q ss_pred hHHHH-HHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471 220 DALTH-LLNYVWPNIFETSPHLVQAFMDAVEGLR 252 (318)
Q Consensus 220 ~~i~h-ll~~l~~~i~d~~~~vr~~ii~~i~~i~ 252 (318)
....+ +++.+...+.+.+.+++..++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11211 4566666666678899999998888775
No 75
>KOG1248|consensus
Probab=97.47 E-value=0.069 Score=56.92 Aligned_cols=258 Identities=13% Similarity=0.193 Sum_probs=152.5
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGL-VDEQQKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~-~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
..+..++.+.....+.-.-++..+. .+.|.. +..++++|.=+-..|+.+++. .+..........|...|.+-+++..
T Consensus 632 ~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~ 710 (1176)
T KOG1248|consen 632 KTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS 710 (1176)
T ss_pred HHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc
Confidence 3344555555544444444555555 333433 445799999999999999987 1111102444445555666667766
Q ss_pred HHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHH
Q psy10471 85 KAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVL 162 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl 162 (318)
...|..+++++-.|-+..+-+ ++++.++.. .+-.+++.+...++...
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E-------------------------------vIL~~Ke~n~~aR~~Af 759 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE-------------------------------VILSLKEVNVKARRNAF 759 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------HHHhcccccHHHHhhHH
Confidence 778999999998888876632 122222111 11122444444445555
Q ss_pred HHHHHHH--HH-Hcccc---ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC
Q psy10471 163 KALSFLF--EY-IGEMG---KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET 236 (318)
Q Consensus 163 ~al~~i~--~~-lg~~~---~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~ 236 (318)
+++-++. .. +...- ..-++.+++.+..-+......++..-+-++.++..--+....++.+..+++.+--.|...
T Consensus 760 ~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 760 ALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 5555554 21 11111 113344445544444444455554446666676666555556778888988888888889
Q ss_pred ChHHHHHHHHHHHHHHHHcChhhHHHhH---HHHh---ccccc-c----chHHHHHHHHHhhccccccccccCC
Q psy10471 237 SPHLVQAFMDAVEGLRVALGPVRILQYV---LQGL---FHPAR-K----VRDVYWKIYNSLYIGGQDALISAYP 299 (318)
Q Consensus 237 ~~~vr~~ii~~i~~i~~alG~~~~~~~v---l~~l---~~~a~-~----~r~~~w~i~~~~~~~~~~~~~p~~p 299 (318)
+++++..++..+...+..+...-+.||+ +|.+ .|+.+ + +|-.+-+++.... .+++-+|+|
T Consensus 840 sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg---~~eLe~~~p 910 (1176)
T KOG1248|consen 840 SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG---AEELESFLP 910 (1176)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC---HHHHHhhCH
Confidence 9999999999999999999887666665 4544 45643 3 4444444444433 247777877
No 76
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.42 E-value=0.051 Score=49.63 Aligned_cols=219 Identities=12% Similarity=0.103 Sum_probs=125.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh--hCHH---H
Q psy10471 33 IIEHGLVDEQQKVQENCIDLVGRIADRGPE-YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA--IGPH---D 106 (318)
Q Consensus 33 ~l~~~l~d~~~~vR~aa~~~LG~la~~~~~-~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~--igp~---~ 106 (318)
.+.+.|.++++.+|.-|+..|+.+.+..+. ..+..+..-++.=..+.+.| ...++.+ ++++..+.+. .++. .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHH
Confidence 456788999999999999999999987773 44445554444445566654 3334444 7777776632 2232 4
Q ss_pred HHHHHHHhhcccch--hhHHHHHHHHHHHHhhcC------cccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccccc
Q psy10471 107 VLATLLNNLKVQER--QNRVCTTVAIAIVAETCS------PFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGEMGK 177 (318)
Q Consensus 107 ~l~~Ll~~Lk~~~~--~~R~~~~~ai~~i~~~~~------p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~~~~ 177 (318)
++..+......++. +.|..+.+-+..+.++.. ....+..+++....+ +|.---.+++.+..+.+... .
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-
Confidence 56666666555554 578888776655443321 123444444444222 22222222222222222211 0
Q ss_pred cchhhhHHHHHHHH--------h--cCCH------HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHH
Q psy10471 178 DYIYAVTPLLEDAL--------M--DRDL------VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLV 241 (318)
Q Consensus 178 ~yl~~iiP~l~~~l--------~--~~~~------~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr 241 (318)
.....-+.+++ + ..|+ ..+..+...+...- .--.+..|.+++++..+++.++
T Consensus 158 ---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~---------~fa~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 ---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP---------LFAPFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred ---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH---------hhHHHHHHHHHHHHcCCCcHHH
Confidence 11222222222 1 1121 33333333332211 1225677888888888899999
Q ss_pred HHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 242 QAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 242 ~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
..++.++...+...|.+.+.||+.+..
T Consensus 226 ~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 226 LDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999999999999999999876543
No 77
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.38 E-value=0.0026 Score=54.64 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=84.7
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHH-HccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEY-IGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE 219 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~-lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~ 219 (318)
..+|.+..-++.-+.--+-.+.+.+..+.+. -+.+..|.+|++++.+.+++.++++.+...+..++..++......| +
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG-~ 116 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG-E 116 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-H
Confidence 4556666666554444445566667777776 4667889999999999999999999999999999999966655555 3
Q ss_pred hHHHHHHHhhhhccc---------------CCChHHHHHHHHHHHHHHHHcChhhHH
Q psy10471 220 DALTHLLNYVWPNIF---------------ETSPHLVQAFMDAVEGLRVALGPVRIL 261 (318)
Q Consensus 220 ~~i~hll~~l~~~i~---------------d~~~~vr~~ii~~i~~i~~alG~~~~~ 261 (318)
....|+... +|-+. .....++..|.++++.+-..-|+|.|.
T Consensus 117 aLvPyyrqL-Lp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 117 ALVPYYRQL-LPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHH-HHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 333332222 23222 134678888999999999999998754
No 78
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.38 E-value=0.018 Score=53.92 Aligned_cols=143 Identities=17% Similarity=0.285 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHHHhc--cCcCCChHhHHHHHHhhcCCCC--HHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMG--CAILPHLKNLVEIIEHGLVDEQ--QKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLE 78 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g--~~~~P~l~~l~~~l~~~l~d~~--~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~ 78 (318)
++..+.++++-++..+| ....-....+.|.+.+.++|.+ +.+|.+|+.+||.++-.++.... ..+.+..+..++.
T Consensus 102 E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~ 181 (309)
T PF05004_consen 102 EQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFL 181 (309)
T ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Confidence 45578899999999977 4566667788888888888854 67899999999999875554332 4544455553332
Q ss_pred --Hhhh----------chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHH
Q psy10471 79 --LLKA----------HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL 146 (318)
Q Consensus 79 --~L~d----------~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L 146 (318)
..+. +...+..+|+.+-|-+...++++.+-..+ . ..+|.|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~----~------------------------~~~~~l 233 (309)
T PF05004_consen 182 LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL----E------------------------EALPAL 233 (309)
T ss_pred HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH----H------------------------HHHHHH
Confidence 2232 12468899999999999877775442111 0 235667
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471 147 MNEYRVPELNVQNGVLKALSFLFEYIGE 174 (318)
Q Consensus 147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~ 174 (318)
...+..++.+||.++-++|..+|+....
T Consensus 234 ~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 234 SELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 7777777888888888888888876543
No 79
>KOG2933|consensus
Probab=97.29 E-value=0.0013 Score=60.35 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
++.-|+..|..|+.--.+.+.|-+.++...+..-+++..+.|-++|+.|++.+.+.-...+ -.+....+-.|+.--..+
T Consensus 104 ~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ld~lv~~Ll~ka~~d 182 (334)
T KOG2933|consen 104 DKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQELDDLVTQLLHKASQD 182 (334)
T ss_pred HHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccc
Confidence 5677889999999988888999999999999999999999999999999999999766554 234444444333222225
Q ss_pred hHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcc
Q psy10471 84 KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV 117 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~ 117 (318)
+.-||..|-+++-.+.+...|..+++.|...++-
T Consensus 183 nrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~ 216 (334)
T KOG2933|consen 183 NRFVREDAEKALVAMVNHVTPQKLLRKLIPILQH 216 (334)
T ss_pred chHHHHHHHHHHHHHHhccChHHHHHHHHHHHhh
Confidence 6679999999999999999999999998888764
No 80
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.28 E-value=0.014 Score=53.08 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=123.4
Q ss_pred hHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 29 NLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 29 ~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
+=++.++..|+. ++|..++.++.++|..|......--+.+. ..+..+.++|+++++++|..|++++..++....-...
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 344666777765 67999999999999987633210001111 1222345777999999999999998877642111111
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHH-h-cCCcchHHHHHHHHHHHHHHHHccccccchhhhHH
Q psy10471 108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE-Y-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP 185 (318)
Q Consensus 108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~-~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP 185 (318)
+... + +-.... . ...+.++|.+.++++..+.- ......-+...+|
T Consensus 91 Ik~~------------------i-------------~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~ 137 (254)
T PF04826_consen 91 IKMY------------------I-------------PQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIP 137 (254)
T ss_pred HHHH------------------H-------------HHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHhhHH
Confidence 1000 0 001111 1 12356778888888887742 2222222344677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc---hhHHHHHHHhhhhcccC--CChHHHHHHHHHHHHHHHHcChh--
Q psy10471 186 LLEDALMDRDLVHRQTACATIKHMALGVYGFGC---EDALTHLLNYVWPNIFE--TSPHLVQAFMDAVEGLRVALGPV-- 258 (318)
Q Consensus 186 ~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~---~~~i~hll~~l~~~i~d--~~~~vr~~ii~~i~~i~~alG~~-- 258 (318)
.+..++..++...|.++..++..++..-...+. ......++ .+|+ ++.++...++.-.+.|...++.+
T Consensus 138 ~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~-----~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~ 212 (254)
T PF04826_consen 138 DLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFL-----SLFNSSESKENLLRVLTFFENINENIKKEAY 212 (254)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHH-----HHHccCCccHHHHHHHHHHHHHHHhhCcccc
Confidence 888899999999999999999888776531111 11112222 2333 46788999999999999888864
Q ss_pred ------hHHHhHHHHhccccc
Q psy10471 259 ------RILQYVLQGLFHPAR 273 (318)
Q Consensus 259 ------~~~~~vl~~l~~~a~ 273 (318)
+-...++ .+||..+
T Consensus 213 ~~~~~~~~~~~L~-~~~~e~~ 232 (254)
T PF04826_consen 213 VFVQDDFSEDSLF-SLFGESS 232 (254)
T ss_pred eeccccCCchhHH-HHHccHH
Confidence 2334444 6677665
No 81
>KOG1061|consensus
Probab=97.13 E-value=0.064 Score=54.81 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc--ChhhHHHhHHHHhccc-
Q psy10471 195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL--GPVRILQYVLQGLFHP- 271 (318)
Q Consensus 195 ~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al--G~~~~~~~vl~~l~~~- 271 (318)
++.-|...++.++.=++.+. +.. .++.-++.+.+|+..+|+...+.+.=++-..- ..+.+.+.+++.--.+
T Consensus 437 epeak~amiWilg~y~~~i~-----~a~-elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~ 510 (734)
T KOG1061|consen 437 EPEAKAALIWILGEYAERIE-----NAL-ELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADT 510 (734)
T ss_pred ChHHHHHHHHHHhhhhhccC-----cHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccc
Confidence 47788888888877666553 333 34445579999998888887776665533333 3456777777777442
Q ss_pred -cccchH---HHHHHHH
Q psy10471 272 -ARKVRD---VYWKIYN 284 (318)
Q Consensus 272 -a~~~r~---~~w~i~~ 284 (318)
..-+|| .|||.+.
T Consensus 511 ~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 511 DNPDLRDRGLIYWRLLS 527 (734)
T ss_pred cChhhhhhHHHHHHHhh
Confidence 234666 9999985
No 82
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.13 E-value=0.12 Score=51.77 Aligned_cols=229 Identities=13% Similarity=0.146 Sum_probs=117.4
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
++-+..++.++.|++..||..|++.|..+|...++++ .++...|.++|+++++.-+.++=+++..+-+ ++|...
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v-----~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~-~d~k~t 131 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV-----SKVADVLVQLLQTDDPVELDAVKNSLMSLLK-QDPKGT 131 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H-----HHHHHHHHHHTT---HHHHHHHHHHHHHHHH-H-HHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH-----hHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-cCcHHH
Confidence 3567778899999999999999999999999766543 4566777888899888778888888888885 888888
Q ss_pred HHHHHHhhc---ccchhhHHHHHHHHHHHHhhcCc--cc-----------chHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471 108 LATLLNNLK---VQERQNRVCTTVAIAIVAETCSP--FT-----------VLPALMNEYRVPELNVQNGVLKALSFLFEY 171 (318)
Q Consensus 108 l~~Ll~~Lk---~~~~~~R~~~~~ai~~i~~~~~p--~~-----------vip~L~~~~~d~~~~v~~~vl~al~~i~~~ 171 (318)
+..+++.+. .++...|--+. ..|.+...+ .. ++.-.-..++|-. ..=+..++.+.++
T Consensus 132 L~~lf~~i~~~~~~de~~Re~~l---kFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVT----aeEF~l~m~lL~~ 204 (556)
T PF05918_consen 132 LTGLFSQIESSKSGDEQVRERAL---KFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVT----AEEFELFMSLLKS 204 (556)
T ss_dssp HHHHHHHHH---HS-HHHHHHHH---HHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccCchHHHHHHH---HHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHh
Confidence 888888776 34444444333 233322221 11 1112222333311 1112222333333
Q ss_pred Hcc----ccccchhhhHHHHHHHH------hcCCHHHHHHHHHHHHHHhhh-hcCCCchhHHHHHHHhhhhcccCCChHH
Q psy10471 172 IGE----MGKDYIYAVTPLLEDAL------MDRDLVHRQTACATIKHMALG-VYGFGCEDALTHLLNYVWPNIFETSPHL 240 (318)
Q Consensus 172 lg~----~~~~yl~~iiP~l~~~l------~~~~~~~R~~a~~~i~~la~~-~~~~~~~~~i~hll~~l~~~i~d~~~~v 240 (318)
+.. ...+-..+++..+..-. ...|+..-...+..+..-.+. ..+......+..+...++|.+.+-.++.
T Consensus 205 lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~ 284 (556)
T PF05918_consen 205 LKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDR 284 (556)
T ss_dssp SGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----H
T ss_pred CccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHH
Confidence 332 11222234555555333 112222222222222222222 2222223445556666677776777788
Q ss_pred HHHHHHHHHHHHHHcCh---hhHHHhHHHHhc
Q psy10471 241 VQAFMDAVEGLRVALGP---VRILQYVLQGLF 269 (318)
Q Consensus 241 r~~ii~~i~~i~~alG~---~~~~~~vl~~l~ 269 (318)
+..++.++..++...|. ..++|.+...+.
T Consensus 285 kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 285 KLDLLKLLAELSPFCGAQDARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHHHHHHHTT----THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence 88889998888888886 446677777774
No 83
>KOG4413|consensus
Probab=97.11 E-value=0.087 Score=49.18 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=127.3
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHH-----HHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC-----FELLELLKAHKKAIRRATVNTFGYIAKA 101 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il-----~~Ll~~L~d~~~~vR~~av~~lg~la~~ 101 (318)
.+++||.+...|..++..|+.-+++++|.+.+.+.... ..++.-++ ..+++.+-..+.+|-.+|++++..++-.
T Consensus 80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtna-VseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNA-VSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhh-HHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 35788888888999999999999999999999877322 33333332 2233444457888999999999988742
Q ss_pred hCH------HHHHH-HHHHhhcc--cch-hhHHHH-HHHHHH----HHhhcCcccchHHHHHHhcC-CcchHHHHHHHHH
Q psy10471 102 IGP------HDVLA-TLLNNLKV--QER-QNRVCT-TVAIAI----VAETCSPFTVLPALMNEYRV-PELNVQNGVLKAL 165 (318)
Q Consensus 102 igp------~~~l~-~Ll~~Lk~--~~~-~~R~~~-~~ai~~----i~~~~~p~~vip~L~~~~~d-~~~~v~~~vl~al 165 (318)
-+. .++++ .-+.||.. .+- ++|+.- .+-|.. .+..|....++.-|..+++. .+.-++..+++.+
T Consensus 159 paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 159 PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 111 11111 01112211 111 333322 111111 23456566788888888876 4445555566666
Q ss_pred HHHHHHHccccccchhh--hHHHHHHHHhcC--CHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHHhhhhcccC----C
Q psy10471 166 SFLFEYIGEMGKDYIYA--VTPLLEDALMDR--DLVHRQTACATIKHMALGVYGFG-CEDALTHLLNYVWPNIFE----T 236 (318)
Q Consensus 166 ~~i~~~lg~~~~~yl~~--iiP~l~~~l~~~--~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~~l~~~i~d----~ 236 (318)
......- ....|+++ ++-.+.+.+... ++.-+-.+.-..+.+-....--+ .++.+..-++...++-|+ .
T Consensus 239 teLaete--HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn 316 (524)
T KOG4413|consen 239 TELAETE--HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHHh--hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence 6555542 22567754 777777777533 33222212221111111100001 122333333333444444 5
Q ss_pred ChHHHHHHHHHHHHHHHHc-Chhh
Q psy10471 237 SPHLVQAFMDAVEGLRVAL-GPVR 259 (318)
Q Consensus 237 ~~~vr~~ii~~i~~i~~al-G~~~ 259 (318)
+++.+..++++++.+.... |.|.
T Consensus 317 DpdaieaAiDalGilGSnteGadl 340 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTEGADL 340 (524)
T ss_pred CchHHHHHHHHHHhccCCcchhHH
Confidence 7889999999999987766 4443
No 84
>KOG4224|consensus
Probab=97.10 E-value=0.0092 Score=56.17 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=115.7
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSA--REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP- 104 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~--~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp- 104 (318)
+.++|.++.+.+|.+++|+-.|-.+||.+|+.+.+...+ .--.|. ++++|+++.-..=.+.+-++-.|+ +-|
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~---lv~Llqs~~~plilasVaCIrnis--ihpl 324 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPL---LVELLQSPMGPLILASVACIRNIS--IHPL 324 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchH---HHHHHhCcchhHHHHHHHHHhhcc--cccC
Confidence 468999999999999999999999999999876653321 112233 345556633222222222221122 222
Q ss_pred -------HHHHHHHHHhhcccch---h-hHHHHHHHHHHHHhhcC----cccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471 105 -------HDVLATLLNNLKVQER---Q-NRVCTTVAIAIVAETCS----PFTVLPALMNEYRVPELNVQNGVLKALSFLF 169 (318)
Q Consensus 105 -------~~~l~~Ll~~Lk~~~~---~-~R~~~~~ai~~i~~~~~----p~~vip~L~~~~~d~~~~v~~~vl~al~~i~ 169 (318)
.-.+..|++.|+..+. | +-+.|..-++...+.-. ....+|-+...++|...++|..+-.++....
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 1235557888874443 2 22222222222222211 2368899999999999999988888877654
Q ss_pred HHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 170 EYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 170 ~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
+.+.++.|+ ..++|.+.-..-+.+..+|-+++.++..+++.+
T Consensus 405 --l~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 405 --LNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred --hccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 456677777 358888888777888999999999998888776
No 85
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.19 Score=52.08 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA 86 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~ 86 (318)
+.-++|.++.. |.+ ++.+.|-++....-.+..+++-.=.-+-++++.-+ .+-.-.+..+.+.++++++.
T Consensus 39 AmK~iIa~M~~--G~d----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-----~~~lLavNti~kDl~d~N~~ 107 (757)
T COG5096 39 AMKKIIAQMSL--GED----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-----ELALLAVNTIQKDLQDPNEE 107 (757)
T ss_pred HHHHHHHHHhc--CCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHhhccCCCHH
Confidence 44457888877 877 55666666554445667788877777777777433 22223344567778889999
Q ss_pred HHHHHHHHHHHHHhh--hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHH---hhcCcc-cchHHHHHHhcCCcchHHHH
Q psy10471 87 IRRATVNTFGYIAKA--IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA---ETCSPF-TVLPALMNEYRVPELNVQNG 160 (318)
Q Consensus 87 vR~~av~~lg~la~~--igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~---~~~~p~-~vip~L~~~~~d~~~~v~~~ 160 (318)
+|..|+++++.+... +| .+++.+.+.+.+..-.+|..++.|+..+. ...++- ..+-.+.....|+++.+...
T Consensus 108 iR~~AlR~ls~l~~~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~n 185 (757)
T COG5096 108 IRGFALRTLSLLRVKELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIAN 185 (757)
T ss_pred HHHHHHHHHHhcChHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHH
Confidence 999999999875431 11 24555666666666689999999998766 233343 36677777788999999988
Q ss_pred HHHHHHHHHHHHccccccchhhhHHHHHH
Q psy10471 161 VLKALSFLFEYIGEMGKDYIYAVTPLLED 189 (318)
Q Consensus 161 vl~al~~i~~~lg~~~~~yl~~iiP~l~~ 189 (318)
++.++..+..- ...+|...+.-.+.+
T Consensus 186 Al~sl~~i~~e---~a~~~~~~~~~~i~~ 211 (757)
T COG5096 186 ALASLAEIDPE---LAHGYSLEVILRIPQ 211 (757)
T ss_pred HHHHHHHhchh---hhhhHHHHHHHHhhh
Confidence 88888877654 345566544444443
No 86
>KOG1992|consensus
Probab=97.07 E-value=0.083 Score=54.44 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=161.2
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHH-hhcCCC--CHHHHHHHHHHHHHHHhhCC----------CCCChhhHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIE-HGLVDE--QQKVQENCIDLVGRIADRGP----------EYVSAREWMR 71 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~-~~l~d~--~~~vR~aa~~~LG~la~~~~----------~~i~~~~~~~ 71 (318)
|+.++.+++.|+..-..-+.+-+..-+..++ +.-+|+ +++....++-.+-.+|..+. +-++..++..
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 8899999999999875567777777666654 355665 58888888888888886543 2222222221
Q ss_pred HHHHHHHHhhh----chHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHH----------
Q psy10471 72 ICFELLELLKA----HKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVA---------- 134 (318)
Q Consensus 72 il~~Ll~~L~d----~~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~---------- 134 (318)
- ..+..|.+ +.+-+|..+++=....-+.+||. .+++.+.+.|+.+++.+|.-.|.++-.+-
T Consensus 459 ~--~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~i 536 (960)
T KOG1992|consen 459 N--QILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKI 536 (960)
T ss_pred H--HhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccc
Confidence 1 12222232 34557888888887777788887 46778888999888888888888885432
Q ss_pred ---hhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh-----cCCHHHHHHHHH
Q psy10471 135 ---ETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-----DRDLVHRQTACA 204 (318)
Q Consensus 135 ---~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~-----~~~~~~R~~a~~ 204 (318)
+.+.|| ..+..|...+..|+..=..-..||++.++..+.+..-+|.+.+++.+-..+. -.++.+---...
T Consensus 537 f~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFE 616 (960)
T KOG1992|consen 537 FGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFE 616 (960)
T ss_pred cchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 223343 3334444455556553346788999999988877777888888887777663 234565556666
Q ss_pred HHHHHhhhhcCCCc---hhHHHHHHHhhhhccc-CCChHHHHHHHHHHHHHHHHcCh---hhHHHhHHHHh
Q psy10471 205 TIKHMALGVYGFGC---EDALTHLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGP---VRILQYVLQGL 268 (318)
Q Consensus 205 ~i~~la~~~~~~~~---~~~i~hll~~l~~~i~-d~~~~vr~~ii~~i~~i~~alG~---~~~~~~vl~~l 268 (318)
.++-+..+....+- ......++|-+ +.++ ++-.+....+...+..+..+=+. |.++|.+.+.+
T Consensus 617 si~~li~~t~~~~~~~vs~~e~aL~p~f-q~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 617 SIGLLIRKTCKANPSAVSSLEEALFPVF-QTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 77666666654441 11122233222 2222 23344555666666666655543 55666444443
No 87
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.95 E-value=0.027 Score=51.21 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=95.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHH--
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSARE-WMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH-- 105 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~-~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~-- 105 (318)
.++.+..++.+++|.+|..|++++..++.........+. ...+|..+ ... -+..++.++++.+..+.- ...+
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~---~s~~lns~~Q~agLrlL~nLtv-~~~~~~ 130 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET---VSSPLNSEVQLAGLRLLTNLTV-TNDYHH 130 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHccCC-Ccchhh
Confidence 356688899999999999999999999876554332333 33344422 243 356688899999988752 2221
Q ss_pred ---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc------CcccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccc
Q psy10471 106 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETC------SPFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGEM 175 (318)
Q Consensus 106 ---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~------~p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~~ 175 (318)
..++.++..|...+...|.-+...+..+++.- -..++++.|+..+... ..++...++.-+..+-+.++..
T Consensus 131 ~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 131 MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 34667788777666667777777776555321 1247899999999776 4566666777777776666553
No 88
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.95 E-value=0.16 Score=49.41 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHH----HHHHHHHhh-cccchhhHHHHHHHHHHHH----hhc
Q psy10471 68 EWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHD----VLATLLNNL-KVQERQNRVCTTVAIAIVA----ETC 137 (318)
Q Consensus 68 ~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~----~l~~Ll~~L-k~~~~~~R~~~~~ai~~i~----~~~ 137 (318)
+...++..+++.... .....|..+.+.++.+.++..+.+ +++.+...+ ..++...|......+.-++ ...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 445566667776566 557799999999999999975543 344444444 1222234444444433222 334
Q ss_pred Cc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--------cc----c-cchhhhHHHHHHHHhcCCHHHHHHH
Q psy10471 138 SP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--------MG----K-DYIYAVTPLLEDALMDRDLVHRQTA 202 (318)
Q Consensus 138 ~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--------~~----~-~yl~~iiP~l~~~l~~~~~~~R~~a 202 (318)
.| ...+..|+..+.+ .++...+.+++.-++.-.+. .. + .++..++|.+.+..+..+...|..+
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 45 3677788888887 44455666666655543111 11 2 2335689999999998888899999
Q ss_pred HHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhH
Q psy10471 203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264 (318)
Q Consensus 203 ~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~v 264 (318)
..++.++...+...=....+..++|.+++.+.-++++++.+.++++..+..-- ++.+.+|+
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl 404 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHL 404 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHH
Confidence 99998888877533335677779999999998888899999999988887655 55555543
No 89
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.88 E-value=0.06 Score=53.54 Aligned_cols=252 Identities=18% Similarity=0.168 Sum_probs=140.1
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~ 105 (318)
.+.+++|.+-..++|.-.+|.-.+++++-.+++.. +....+.+.+..|-..|+.+....|..|++.+.+++- .-|+
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam-~~P~ 336 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN---VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM-KYPQ 336 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-hCCc
Confidence 34567777777888878999999999998888743 4456777888777778899888999999999999995 4554
Q ss_pred HH------HHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------ccchHHHHHHhcCCc---------------chHH
Q psy10471 106 DV------LATLLNNLKVQERQNRVCTTVAIAIVAETCSP------FTVLPALMNEYRVPE---------------LNVQ 158 (318)
Q Consensus 106 ~~------l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~~vip~L~~~~~d~~---------------~~v~ 158 (318)
.+ +..|++ + ..|....-||..+-.++.. -..+|.++..+.|.= +.-+
T Consensus 337 kv~vcN~evEsLIs---d---~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 337 KVSVCNKEVESLIS---D---ENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred eeeecChhHHHHhh---c---ccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 11 111111 1 1122222222222222111 023333443333310 1122
Q ss_pred HHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc----------CCCc--------h
Q psy10471 159 NGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY----------GFGC--------E 219 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~----------~~~~--------~ 219 (318)
..++.-+..+...-|+ +|+.|+- -.+.+.++ .+|.-|+.+...++...+-|. ..|. .
T Consensus 411 ~s~l~FL~~~L~~eGg~eFK~~~V---daisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~ 486 (898)
T COG5240 411 LSYLDFLGSSLLQEGGLEFKKYMV---DAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG 486 (898)
T ss_pred HHHHHHHHHHHHhcccchHHHHHH---HHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc
Confidence 3444444444433322 4444442 23333332 223334333333333222221 0121 2
Q ss_pred hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh---ccccc-cchHHHHHHHHHhhcccccccc
Q psy10471 220 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL---FHPAR-KVRDVYWKIYNSLYIGGQDALI 295 (318)
Q Consensus 220 ~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l---~~~a~-~~r~~~w~i~~~~~~~~~~~~~ 295 (318)
..+.|+.|+++ . ++..+|..++.++...+....+-+..+.+.-.| +.|+. .+||--.=.+.++- ..|++.
T Consensus 487 ~yvrhIyNR~i-L---EN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~da~~ 560 (898)
T COG5240 487 KYVRHIYNRLI-L---ENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR--LSDACE 560 (898)
T ss_pred hHHHHHHHHHH-H---hhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh--hhhhhh
Confidence 46777777763 1 678999999999999988887766666655555 44544 57775444444444 668888
Q ss_pred cc
Q psy10471 296 SA 297 (318)
Q Consensus 296 p~ 297 (318)
|.
T Consensus 561 pl 562 (898)
T COG5240 561 PL 562 (898)
T ss_pred cc
Confidence 83
No 90
>KOG1967|consensus
Probab=96.87 E-value=0.0084 Score=62.06 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=98.6
Q ss_pred chhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 3 SDKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
..||.=++++...-.-... -+.|..+.|+|++++.|.=+++.||-.++.++..+-.-.+..+ .+....++..++.+=+
T Consensus 882 ~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~-t~~~~Tlvp~lLsls~ 960 (1030)
T KOG1967|consen 882 SQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ-TEHLSTLVPYLLSLSS 960 (1030)
T ss_pred cchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc-hHHHhHHHHHHHhcCC
Confidence 3456555555544332222 5899999999999999999999999999999999998777765 5667777777887777
Q ss_pred hch---HHHHHHHHHHHHHHHhhhCH-----H--HHHHHHHHhhcccchhhHHHHHHH
Q psy10471 82 AHK---KAIRRATVNTFGYIAKAIGP-----H--DVLATLLNNLKVQERQNRVCTTVA 129 (318)
Q Consensus 82 d~~---~~vR~~av~~lg~la~~igp-----~--~~l~~Ll~~Lk~~~~~~R~~~~~a 129 (318)
|++ ..||..|+++++.+.+...+ + +++.+|.+.|.|+.|-+|.+.+++
T Consensus 961 ~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 961 DNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred CCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 733 57999999999999985553 2 688999999999888888877654
No 91
>KOG1991|consensus
Probab=96.81 E-value=0.38 Score=50.67 Aligned_cols=201 Identities=11% Similarity=0.126 Sum_probs=119.4
Q ss_pred CchhhhHHHHHHHHHHHhccCcCCChHh----HHHHHHhhcCCCCHHHHHHHHHHHHHHHh-hCCCCCChhhHHHHHHHH
Q psy10471 2 SSDKNLGIKIVQQIAILMGCAILPHLKN----LVEIIEHGLVDEQQKVQENCIDLVGRIAD-RGPEYVSAREWMRICFEL 76 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~----l~~~l~~~l~d~~~~vR~aa~~~LG~la~-~~~~~i~~~~~~~il~~L 76 (318)
.++|.-|++++|.|+..+-. =.||-++ |++.+.|.++++.---|.-||+.+|++++ ...+ ..-+...+...
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K-~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t 507 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLK-KSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELT 507 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHH
Confidence 36788999999999986632 1233232 45556788898777779999999999995 3333 33444455545
Q ss_pred HHHhh-hchHHHHHHHHHHHHHHHhh-------hCHH--HHHHHHHHhhcccchhhHHHHHHHH-HHHHhhcCcc-----
Q psy10471 77 LELLK-AHKKAIRRATVNTFGYIAKA-------IGPH--DVLATLLNNLKVQERQNRVCTTVAI-AIVAETCSPF----- 140 (318)
Q Consensus 77 l~~L~-d~~~~vR~~av~~lg~la~~-------igp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai-~~i~~~~~p~----- 140 (318)
.+.|. |+.-.||.+|.-++-.+... +.|+ .++..|+..-+.-+...=..+.+.| ...++...||
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 56667 66667887755555443332 2222 2344555544432322223445554 3455676775
Q ss_pred -cchHHHHHHhcC---Ccc-----hHH-HHHHHHHHHHHHHHccc--cccch-hhhHHHHHHHHhcCCHHHHHHHHHHH
Q psy10471 141 -TVLPALMNEYRV---PEL-----NVQ-NGVLKALSFLFEYIGEM--GKDYI-YAVTPLLEDALMDRDLVHRQTACATI 206 (318)
Q Consensus 141 -~vip~L~~~~~d---~~~-----~v~-~~vl~al~~i~~~lg~~--~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i 206 (318)
.+.-++.+.+.+ .+. .+. -+++++++++..++... .-.++ +.+.|.+..++++.-..+-+-+...+
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334455566653 111 122 57888999998888663 33444 56778888888666554444444443
No 92
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.79 E-value=0.036 Score=46.97 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=94.1
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHH
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---AREWMRICFELLELLKA-HKKAIRRATVNTFGYIA 99 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la 99 (318)
..-++.++..+..++++.++.-|..++..++..++.+++.+- ...|.+. ++.+|+. +.+.++..++.++..|-
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~---Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA---LLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 446788888899999999999999999999999998754331 2455555 5566677 55668999999999988
Q ss_pred hhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc
Q psy10471 100 KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK 177 (318)
Q Consensus 100 ~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~ 177 (318)
..++.+.-+ .|.. ..|. .+++++++..++ ......++.++..+.+.....|.
T Consensus 97 ~~~~~~p~l-------------~Rei-----------~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 97 DLIRGKPTL-------------TREI-----------ATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred HHhcCCCch-------------HHHH-----------hhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc
Confidence 777654110 0111 1121 345556666655 45556778888888887777788
Q ss_pred cchhhhHHHHHH
Q psy10471 178 DYIYAVTPLLED 189 (318)
Q Consensus 178 ~yl~~iiP~l~~ 189 (318)
||..++-..+..
T Consensus 151 p~~~ki~~~l~~ 162 (165)
T PF08167_consen 151 PFANKIESALLS 162 (165)
T ss_pred chHHHHHHHHHH
Confidence 887765444443
No 93
>KOG2032|consensus
Probab=96.78 E-value=0.23 Score=48.57 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHH-
Q psy10471 70 MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN- 148 (318)
Q Consensus 70 ~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~- 148 (318)
-.++..+.+-.+|++..+|+.|++.+|..+.. .|.++..+ ... ++.+++.
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th------------~~~----------------~ldaii~g 307 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTH------------KTT----------------QLDAIIRG 307 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHh------------HHH----------------HHHHHHHH
Confidence 34555566777888889999999999999975 56544221 111 1222333
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHH-ccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch---hHHH-
Q psy10471 149 EYRVPELNVQNGVLKALSFLFEYI-GEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE---DALT- 223 (318)
Q Consensus 149 ~~~d~~~~v~~~vl~al~~i~~~l-g~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~---~~i~- 223 (318)
.+.+.+.+|+-.+++++.-+.+.. +....+|+-.+.=.+..++.+.+..+|-++..+.+.++....+.+++ +.+.
T Consensus 308 L~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k 387 (533)
T KOG2032|consen 308 LYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK 387 (533)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh
Confidence 344445778877888888877665 44566788777778888899999999999999999999887655432 2233
Q ss_pred HHHHhhhhcccCCChHHHH
Q psy10471 224 HLLNYVWPNIFETSPHLVQ 242 (318)
Q Consensus 224 hll~~l~~~i~d~~~~vr~ 242 (318)
.+-++ +..|.|++|.+-.
T Consensus 388 ~~~~l-llhl~d~~p~va~ 405 (533)
T KOG2032|consen 388 RLAPL-LLHLQDPNPYVAR 405 (533)
T ss_pred ccccc-eeeeCCCChHHHH
Confidence 33333 4667777775544
No 94
>KOG2137|consensus
Probab=96.78 E-value=0.034 Score=56.45 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=111.9
Q ss_pred HHHHHHHHhhccc-chhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch
Q psy10471 106 DVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI 180 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~-~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl 180 (318)
.++++|...++.. ..+.+.+..+-...|.++-.+ ..++|-|...++|.+..+|..+++.+..+++.++ .+++
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~v 425 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFV 425 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHH
Confidence 3566666666632 235666666555555555443 3799999999999999999999999999999988 4566
Q ss_pred -hhhHHHHHHHH-hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC--
Q psy10471 181 -YAVTPLLEDAL-MDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG-- 256 (318)
Q Consensus 181 -~~iiP~l~~~l-~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG-- 256 (318)
..|+|.+.++. ++.+..+|.+++.+++.++..+ +...++..+++. ..++.-.+|.+....+...+.+..-.-
T Consensus 426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l---D~~~v~d~~lpi-~~~~~~~dp~iv~~~~~i~~~l~~~~~~g 501 (700)
T KOG2137|consen 426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL---DKAAVLDELLPI-LKCIKTRDPAIVMGFLRIYEALALIIYSG 501 (700)
T ss_pred HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---HHHHhHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhcccc
Confidence 45899998875 4667899999999999888555 566666666666 578777778777777777776665543
Q ss_pred hhhHHHhHHHHh
Q psy10471 257 PVRILQYVLQGL 268 (318)
Q Consensus 257 ~~~~~~~vl~~l 268 (318)
.+.+...|+|.+
T Consensus 502 ~ev~~~~VlPll 513 (700)
T KOG2137|consen 502 VEVMAENVLPLL 513 (700)
T ss_pred eeeehhhhhhhh
Confidence 355555555555
No 95
>KOG1077|consensus
Probab=96.76 E-value=0.35 Score=49.29 Aligned_cols=253 Identities=16% Similarity=0.151 Sum_probs=149.5
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L 80 (318)
++--...-++..+|.++|.+|.--...=+| .+|.. ..+-||..|+.+|=.+-..+++.+.+.+|..=+. .+|
T Consensus 123 rn~~fv~LAL~~I~niG~re~~ea~~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv---~LL 196 (938)
T KOG1077|consen 123 RNPTFVCLALHCIANIGSREMAEAFADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIV---HLL 196 (938)
T ss_pred CCcHHHHHHHHHHHhhccHhHHHHhhhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHH---HHh
Confidence 344444556677777777654332222222 22333 3477899999999999999999887778877555 444
Q ss_pred hhchHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhcc-----cchhh-----HHHHHHHHHHHHhhcCc-----
Q psy10471 81 KAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKV-----QERQN-----RVCTTVAIAIVAETCSP----- 139 (318)
Q Consensus 81 ~d~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~-----~~~~~-----R~~~~~ai~~i~~~~~p----- 139 (318)
.|+.-.|--++..-+-.|++...++ ..+..|.++-.. +++.. =..-+..+.. ..++|
T Consensus 197 ~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl--Lq~~p~~~D~ 274 (938)
T KOG1077|consen 197 DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL--LQIYPTPEDP 274 (938)
T ss_pred CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH--HHhCCCCCCc
Confidence 7765555556666666677666553 112222222211 11100 0001111110 11122
Q ss_pred ------ccchHHHHHHhcCCc--chHH------HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHH
Q psy10471 140 ------FTVLPALMNEYRVPE--LNVQ------NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT 205 (318)
Q Consensus 140 ------~~vip~L~~~~~d~~--~~v~------~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~ 205 (318)
+.++..+++..++|. .+++ ...+++|..++.. +....-+..-+-.+..++.++..++|=.+.+.
T Consensus 275 ~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~--D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEs 352 (938)
T KOG1077|consen 275 STRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL--DSEPELLSRAVNQLGQFLSHRETNIRYLALES 352 (938)
T ss_pred hHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 134444555555442 2222 3345666665542 12234445667788889999999999999999
Q ss_pred HHHHhhhhcCCCchhHHHHHHHhhhhccc-CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 206 IKHMALGVYGFGCEDALTHLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 206 i~~la~~~~~~~~~~~i~hll~~l~~~i~-d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
++.++..- ...+.+.|-...++..++ |.+-++|+.+++.+-.+|..=.......-+++=+
T Consensus 353 m~~L~ss~---~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL 413 (938)
T KOG1077|consen 353 MCKLASSE---FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL 413 (938)
T ss_pred HHHHHhcc---chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 99987761 334666666777778888 6788999999999999998877755444444444
No 96
>KOG1820|consensus
Probab=96.75 E-value=0.13 Score=54.01 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=125.6
Q ss_pred hhhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 4 DKNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
+|--|++-+...-..-+ ....+|...+...+.-.++|.+-.|-..|+..|+.+|...+.-. ...-..++..+++-+++
T Consensus 269 ~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~~v~p~lld~lke 347 (815)
T KOG1820|consen 269 DRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAKNVFPSLLDRLKE 347 (815)
T ss_pred HHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHHhhcchHHHHhhh
Confidence 44455555544444333 45666777777767778899999999999999999999777532 23334455567788899
Q ss_pred chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHH
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVL 162 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl 162 (318)
.+..+|.++++++-.+++...-...... .+..++...+..+....
T Consensus 348 kk~~l~d~l~~~~d~~~ns~~l~~~~~~-----------------------------------I~e~lk~knp~~k~~~~ 392 (815)
T KOG1820|consen 348 KKSELRDALLKALDAILNSTPLSKMSEA-----------------------------------ILEALKGKNPQIKGECL 392 (815)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHH-----------------------------------HHHHhcCCChhhHHHHH
Confidence 8888999888887666652222223333 44445555677777778
Q ss_pred HHHHHHHHHHccc--cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 163 KALSFLFEYIGEM--GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 163 ~al~~i~~~lg~~--~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
..+...++.+|.. ++.-+..++|.+.....|++..+|..+..+++.+....+
T Consensus 393 ~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 393 LLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 8888888888853 445558899999999999999999999999988866653
No 97
>KOG1243|consensus
Probab=96.73 E-value=0.0034 Score=63.22 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=135.1
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
-.+|-..++|.++++++-++-.+|-.=+.-+-++.+...+.+ --.+|+..+..-+.|.++.+|..+++++..++..+
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~---~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI---LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh---hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence 455778899999999999888899888877777776443221 22345555667779999999999999999999999
Q ss_pred CHHHHHHHHHHhhc----ccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471 103 GPHDVLATLLNNLK----VQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 174 (318)
Q Consensus 103 gp~~~l~~Ll~~Lk----~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~ 174 (318)
++..+=..+++.|. |++-..|+-+++.++.|+....| -....++.+.++||-..-+.+.+.++....+....
T Consensus 401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 99855555666664 34446899999999888765544 25666788889999888887777776655544322
Q ss_pred ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 175 ~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
..--.+|+|.+.-...+.+..+|.++-.++..--++.
T Consensus 481 --~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 481 --SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred --hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 1112467788777777889999999888885543333
No 98
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.68 E-value=0.069 Score=53.23 Aligned_cols=171 Identities=17% Similarity=0.167 Sum_probs=107.1
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC-HH-
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG-PH- 105 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig-p~- 105 (318)
.+.+..++..+....-.||.-++..|..+.+..++.- -.-+-.++..|.+.+=|..+.||++|++++...-+..+ |.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 3444445555555678899999999999999766521 11222344456666667888999999999998876554 33
Q ss_pred HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471 106 DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 184 (318)
Q Consensus 106 ~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii 184 (318)
.+.+.|+..++ +++-.+|+.+..-|.. ...-.|..+..-||-+...++.+- ..+.+.+|+.+-.-+..=+
T Consensus 169 ~~~n~l~~~vqnDPS~EVRr~allni~v------dnsT~p~IlERarDv~~anRr~vY---~r~Lp~iGd~~~lsi~kri 239 (885)
T COG5218 169 RIVNLLKDIVQNDPSDEVRRLALLNISV------DNSTYPCILERARDVSGANRRMVY---ERCLPRIGDLKSLSIDKRI 239 (885)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHeee------CCCcchhHHHHhhhhhHHHHHHHH---HHHhhhhcchhhcccccee
Confidence 34555555555 5555677776543311 113345566666665544444332 2556666664422233322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy10471 185 PLLEDALMDRDLVHRQTACATIKH 208 (318)
Q Consensus 185 P~l~~~l~~~~~~~R~~a~~~i~~ 208 (318)
-.+++-+.+++.++|.++.+++.+
T Consensus 240 ~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 240 LLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred hhhhhcchhhhhhHHHHHHHHHHH
Confidence 378888899999999999888865
No 99
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.67 E-value=0.019 Score=49.33 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=82.4
Q ss_pred CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccc
Q psy10471 63 YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142 (318)
Q Consensus 63 ~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~v 142 (318)
.++...|+|+++ +=|...+..-|..|..++-.+.+.-|+..+++.+ -++
T Consensus 33 ~Ldy~~~Lpif~---dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl----------------------------PqL 81 (183)
T PF10274_consen 33 KLDYHHYLPIFF---DGLRETEHPYRFLARQGIKDLLERGGGEKILPVL----------------------------PQL 81 (183)
T ss_pred hcchhhHHHHHH---hhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH----------------------------HHH
Confidence 344567777777 4446644446777777777776654444433221 034
Q ss_pred hHHHHHHhcCCcchHHHHHHHHHHHH---HHHHccccccchhhhHHHHHHHHhcC----C---HHHHHHHHHHHHHHhhh
Q psy10471 143 LPALMNEYRVPELNVQNGVLKALSFL---FEYIGEMGKDYIYAVTPLLEDALMDR----D---LVHRQTACATIKHMALG 212 (318)
Q Consensus 143 ip~L~~~~~d~~~~v~~~vl~al~~i---~~~lg~~~~~yl~~iiP~l~~~l~~~----~---~~~R~~a~~~i~~la~~ 212 (318)
++++-+.+.+.++++...+++++..+ .+.+|...+||+.+++|.+.-+.+.+ | -..++...+.|...-+.
T Consensus 82 I~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~ 161 (183)
T PF10274_consen 82 IIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLEL 161 (183)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHH
Confidence 45566677777888998899999888 77789999999999999988555322 1 12223333444333333
Q ss_pred hcCCCchhHHHHHHHh
Q psy10471 213 VYGFGCEDALTHLLNY 228 (318)
Q Consensus 213 ~~~~~~~~~i~hll~~ 228 (318)
+...|=++++..|-.+
T Consensus 162 lE~~GG~dA~~nIKy~ 177 (183)
T PF10274_consen 162 LERNGGPDAFINIKYM 177 (183)
T ss_pred HHHhcChhHHHHHHHh
Confidence 3333445566555433
No 100
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.67 E-value=0.027 Score=43.00 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=66.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l 108 (318)
.....+.-++|+.+.+|--|+..|+++.+... . ...+..++..++..|+|+.+-|=-.|+++++.++. .-|..++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~---~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~-~~p~~vl 79 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEP---VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD-RHPDEVL 79 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcc---hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-HChHHHH
Confidence 34556677889889999999999999998655 3 33455555556688899888899999999999997 6677788
Q ss_pred HHHHHhhccc
Q psy10471 109 ATLLNNLKVQ 118 (318)
Q Consensus 109 ~~Ll~~Lk~~ 118 (318)
+.|++...+.
T Consensus 80 ~~L~~~y~~~ 89 (92)
T PF10363_consen 80 PILLDEYADP 89 (92)
T ss_pred HHHHHHHhCc
Confidence 8887776543
No 101
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.65 E-value=0.03 Score=48.24 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=66.2
Q ss_pred hhhhHHHHHHHHHHHh-ccCcCCChHhHHHH------------HHhhcCCCCHHHHHHHHHHHHHHHhhCCC--------
Q psy10471 4 DKNLGIKIVQQIAILM-GCAILPHLKNLVEI------------IEHGLVDEQQKVQENCIDLVGRIADRGPE-------- 62 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~-g~~~~P~l~~l~~~------------l~~~l~d~~~~vR~aa~~~LG~la~~~~~-------- 62 (318)
-|..++.+++.++... +..+-.|-+.++|- +..+++|++++||.+|+.++..+-++..+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 4889999999999983 34555555555543 46677999999999999999998776552
Q ss_pred ------CCCh-----hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHH
Q psy10471 63 ------YVSA-----REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 63 ------~i~~-----~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~ 105 (318)
|.+. .-+..+-..|+..|+. .+..+-...+++++.+.. ..||
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~-~tPY 135 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQ-ATPY 135 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHc-cCCh
Confidence 2210 1222222334455555 455566677777777775 4455
No 102
>KOG1062|consensus
Probab=96.62 E-value=0.66 Score=47.93 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHH
Q psy10471 185 PLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQ 262 (318)
Q Consensus 185 P~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~ 262 (318)
+.+.++++|.|..+|+.+..+.-.+.-. ..-...++.++.|+ .. .+++++..+...|..++...-|+. +..
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~---~Nv~~mv~eLl~fL-~~---~d~~~k~~~as~I~~laEkfaP~k~W~id 425 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNE---SNVRVMVKELLEFL-ES---SDEDFKADIASKIAELAEKFAPDKRWHID 425 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHH-Hh---ccHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence 5678888999999999999988666432 23445666677774 44 467899999999999999998876 777
Q ss_pred hHHHHhccccccchHHHHH
Q psy10471 263 YVLQGLFHPARKVRDVYWK 281 (318)
Q Consensus 263 ~vl~~l~~~a~~~r~~~w~ 281 (318)
..+.++-+-...|++.-|.
T Consensus 426 tml~Vl~~aG~~V~~dv~~ 444 (866)
T KOG1062|consen 426 TMLKVLKTAGDFVNDDVVN 444 (866)
T ss_pred HHHHHHHhcccccchhhHH
Confidence 7777776555555554443
No 103
>KOG0567|consensus
Probab=96.61 E-value=0.12 Score=46.79 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCC--cchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471 105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYIYA 182 (318)
Q Consensus 105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~--~~~v~~~vl~al~~i~~~lg~~~~~yl~~ 182 (318)
.+.+.++...+.+++.-.|..++-.+|-+-. -..+|.|...++|. ++-||..+.+|+++|.. +.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s----~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~ 251 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQS----PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------ED 251 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccc----hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HH
Confidence 3455666666665544444444443332211 25689999999875 46788888888887664 56
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10471 183 VTPLLEDALMDRDLVHRQTACATIK 207 (318)
Q Consensus 183 iiP~l~~~l~~~~~~~R~~a~~~i~ 207 (318)
-++.+...+.|.+..+|+....++.
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788889999999999988877763
No 104
>KOG2032|consensus
Probab=96.60 E-value=0.82 Score=44.86 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhccCc---CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-ch
Q psy10471 9 IKIVQQIAILMGCAI---LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HK 84 (318)
Q Consensus 9 l~~i~~La~~~g~~~---~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~ 84 (318)
+..+.-+|++.+... .|.+.+++..+.....|++..+|.-|+..||..++.++... ......++..++.-|-| .+
T Consensus 235 itd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~th~~~~ldaii~gL~D~~~ 313 (533)
T KOG2032|consen 235 ITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RTHKTTQLDAIIRGLYDDLN 313 (533)
T ss_pred HHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HHhHHHHHHHHHHHHhcCCc
Confidence 445666777777743 36888888889999999999999999999999999877544 34444455555555555 56
Q ss_pred HHHHHHHHHHHHHHHhhhC-----HH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-c----c--cch---HHHH
Q psy10471 85 KAIRRATVNTFGYIAKAIG-----PH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-P----F--TVL---PALM 147 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~ig-----p~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-p----~--~vi---p~L~ 147 (318)
..|--++++++..+.+... ++ .+-..+-+.+++++-+.|+.....++.++.-++ + | +|. -+|.
T Consensus 314 ~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll 393 (533)
T KOG2032|consen 314 EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL 393 (533)
T ss_pred cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence 7899999999977666543 33 333344445566666899999999998886554 2 2 133 2344
Q ss_pred HHhcCCcchH
Q psy10471 148 NEYRVPELNV 157 (318)
Q Consensus 148 ~~~~d~~~~v 157 (318)
-.+.|+.+.+
T Consensus 394 lhl~d~~p~v 403 (533)
T KOG2032|consen 394 LHLQDPNPYV 403 (533)
T ss_pred eeeCCCChHH
Confidence 5556666544
No 105
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.60 E-value=0.039 Score=47.57 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH------------HHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471 44 KVQENCIDLVGRIADRGPEYVSAREWMRICFE------------LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL 111 (318)
Q Consensus 44 ~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~------------Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~L 111 (318)
+||.+|+.+|+.+++......-...|.-++.+ +--+++|++.++|.+|+.++..+-+...++-..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~--- 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ--- 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH---
Confidence 58999999999999985532212333333321 123458899999999999999988766555110
Q ss_pred HHhhcccchhhHH----HHHHHHH-HHHhhcCcccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHcc--ccccchhhh
Q psy10471 112 LNNLKVQERQNRV----CTTVAIA-IVAETCSPFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGE--MGKDYIYAV 183 (318)
Q Consensus 112 l~~Lk~~~~~~R~----~~~~ai~-~i~~~~~p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~--~~~~yl~~i 183 (318)
.+++..|. .....++ ++-+ +=-.|+..++.+ +..+...++|++.....+..= --.++++.+
T Consensus 78 -----Ae~~~~~~~sFtslS~tLa~~i~~------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~ 146 (182)
T PF13251_consen 78 -----AEESKGPSGSFTSLSSTLASMIME------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEV 146 (182)
T ss_pred -----HHhcCCCCCCcccHHHHHHHHHHH------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHH
Confidence 11111111 1122221 1110 001255555443 456678888888877765311 123566778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 184 TPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 184 iP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
+..+...+.+.|.++|-.+..+++.+...-
T Consensus 147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 888888889999999999999998886543
No 106
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.082 Score=52.60 Aligned_cols=196 Identities=16% Similarity=0.092 Sum_probs=120.0
Q ss_pred hhhhHHHHHHHHHHHhccC---cCCChH----------------------------hHHHHHHhhcCCCCHHHHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGCA---ILPHLK----------------------------NLVEIIEHGLVDEQQKVQENCIDL 52 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~---~~P~l~----------------------------~l~~~l~~~l~d~~~~vR~aa~~~ 52 (318)
-|..|+|+|.+||..-... -.|.+. .|+..+.....|-+......++.|
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida 398 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDA 398 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHH
Confidence 4778999999999854432 122222 233333333333333344444444
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH--HHHHHHHHHhhcccchhhHHHHHHH
Q psy10471 53 VGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTTVA 129 (318)
Q Consensus 53 LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp--~~~l~~Ll~~Lk~~~~~~R~~~~~a 129 (318)
+..++-.. +.+|..++.=|.+.|.+ ....-++.++.++..+.+.... ..++..|.....+.++ +..+++-
T Consensus 399 ~rsLsl~F-----p~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey--~~I~vrI 471 (898)
T COG5240 399 LRSLSLLF-----PSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEY--HQITVRI 471 (898)
T ss_pred HHHHHhhC-----cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcch--hHHHHHH
Confidence 44444321 45666666555566666 4455677888888777764432 2456666666655543 3345666
Q ss_pred HHHHHhhcC----cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHH
Q psy10471 130 IAIVAETCS----PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACA 204 (318)
Q Consensus 130 i~~i~~~~~----p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~ 204 (318)
++++++.+- |..-+-...|.+--++.-+|.++++|++.+.-...+ ++.+ .+.-.+.++++|.|..+|..|+-
T Consensus 472 L~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 472 LGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred HHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 677776543 444444555555555566889999999987765553 4444 57888999999999999999998
Q ss_pred HHHHH
Q psy10471 205 TIKHM 209 (318)
Q Consensus 205 ~i~~l 209 (318)
++..+
T Consensus 549 ~l~~~ 553 (898)
T COG5240 549 LLRNM 553 (898)
T ss_pred HHHhh
Confidence 88665
No 107
>KOG2022|consensus
Probab=96.55 E-value=1.3 Score=46.40 Aligned_cols=243 Identities=15% Similarity=0.199 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhh--
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKA-- 82 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d-- 82 (318)
|+...||.++.-.|+. --|++.-+|.+.+.|. +++--..++.+|..+|+.+++... ...++..+.+++ ..
T Consensus 528 Tss~~igs~s~~l~e~-P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l---~~~~ 601 (982)
T KOG2022|consen 528 TSSDLIGSLSNWLGEH-PMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVL---NKSN 601 (982)
T ss_pred HHHHHHHHHHHHHhcC-CcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHh---cccc
Confidence 5667778777766652 1244445566666665 344555667778889988887663 245555555444 33
Q ss_pred chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHh-------h--------cccchhhHHHH-HHHHHHHHhh----------
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNN-------L--------KVQERQNRVCT-TVAIAIVAET---------- 136 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~-------L--------k~~~~~~R~~~-~~ai~~i~~~---------- 136 (318)
-+.+.|...++++|++...+-|++....+++. | ++++++.|.+- ..+++.++-.
T Consensus 602 ~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 602 AKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred cCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence 46678999999999999988876443333331 1 23333444432 3333333310
Q ss_pred --------cC---c-----ccchHHHHHHhcC--CcchHHHHHHHHHHHHHHHHcccc-ccchhhhHHHHHHHHhcCCHH
Q psy10471 137 --------CS---P-----FTVLPALMNEYRV--PELNVQNGVLKALSFLFEYIGEMG-KDYIYAVTPLLEDALMDRDLV 197 (318)
Q Consensus 137 --------~~---p-----~~vip~L~~~~~d--~~~~v~~~vl~al~~i~~~lg~~~-~~yl~~iiP~l~~~l~~~~~~ 197 (318)
.. | ..+||.+-+.+.. .+..+-.++|..+..=.+.++..| +++++++.|++.+....+-..
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~ 761 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAV 761 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHH
Confidence 00 1 1345555444321 223334555555444444555557 788899999999865444321
Q ss_pred HH-HHHHH-HHHHHhhhhcCC---CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 198 HR-QTACA-TIKHMALGVYGF---GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 198 ~R-~~a~~-~i~~la~~~~~~---~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
-- -.++. ++....+.++.. .+...++|.+-..-+.-|-..++.-...+..+..+-+-.
T Consensus 762 tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~ 824 (982)
T KOG2022|consen 762 TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKI 824 (982)
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhC
Confidence 11 11111 111111111110 234567776666556656667787777777666555544
No 108
>KOG2025|consensus
Probab=96.49 E-value=0.47 Score=48.46 Aligned_cols=206 Identities=16% Similarity=0.168 Sum_probs=126.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh-CHH-HH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI-GPH-DV 107 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i-gp~-~~ 107 (318)
+...++......+-.||.-++..|..+....++ ++-.-+-.+...++..++|..+.||..|+.++..+-..- +|. .+
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v 164 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPV 164 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccH
Confidence 333344444445678999999999999884443 212345556667888899999999999999999987432 232 45
Q ss_pred HHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHH----HHHHHHHHHHHHccccccchhh
Q psy10471 108 LATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNG----VLKALSFLFEYIGEMGKDYIYA 182 (318)
Q Consensus 108 l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~----vl~al~~i~~~lg~~~~~yl~~ 182 (318)
.+.+...++ |++-.+|+++.-.|.. ...-.|..+..-+|-+...|+- ++..+...+- -+.+
T Consensus 165 ~n~l~~liqnDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~l--------si~k 230 (892)
T KOG2025|consen 165 VNLLKDLIQNDPSDEVRRAALSNISV------DNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSL--------SIDK 230 (892)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcc------CcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhh--------hHHH
Confidence 666666665 5555788877654421 1245566777777766555532 3333322222 2246
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHH-HHHHcCh
Q psy10471 183 VTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG-LRVALGP 257 (318)
Q Consensus 183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~-i~~alG~ 257 (318)
-+-.+++-+.|++..+|+++.+++.+ .-+. ..+.-+..++..+ + .+.+.+++..+++++=. +..-+|.
T Consensus 231 rv~LlewgLnDRe~sVk~A~~d~il~--~Wl~--~~dgni~ElL~~l-d--vsnss~vavk~lealf~~v~e~v~~ 299 (892)
T KOG2025|consen 231 RVLLLEWGLNDREFSVKGALVDAILS--GWLR--FSDGNILELLERL-D--VSNSSEVAVKALEALFSGVREDVGS 299 (892)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHH--HHhh--hccccHHHHHHHh-c--cccchHHHHHHHHHHHHHHHHHhhh
Confidence 66788999999999999999998743 1111 0112233343332 1 12345788888887766 4444454
No 109
>KOG1943|consensus
Probab=96.48 E-value=0.51 Score=50.16 Aligned_cols=186 Identities=18% Similarity=0.199 Sum_probs=109.2
Q ss_pred CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHh
Q psy10471 22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~ 100 (318)
++--++..++..++..++|.+..||.+|++-+|.++.+.+... -..++...++++.. +..+.=+-|+=+++.+|.
T Consensus 334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 3334566777778899999999999999999999999877322 22344444444444 222233466777777775
Q ss_pred h--hCHH---HHHHHHHHhhcccch--------hhHHHHHHHHHHHHhhcCcc-------cchHHHHH-HhcCCcchHHH
Q psy10471 101 A--IGPH---DVLATLLNNLKVQER--------QNRVCTTVAIAIVAETCSPF-------TVLPALMN-EYRVPELNVQN 159 (318)
Q Consensus 101 ~--igp~---~~l~~Ll~~Lk~~~~--------~~R~~~~~ai~~i~~~~~p~-------~vip~L~~-~~~d~~~~v~~ 159 (318)
. +-|. ++++.+++.|.-+++ ++|=++.=.+=..+..+.|. .+.++|+. .+=|+|.++|+
T Consensus 410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 2 2242 677778887764443 23333322221233444432 34444433 55788888887
Q ss_pred HHHHHHHHH----------------------------HHHHcc---ccccchhhhHHHHHHHHh----cCCHHHHHHHHH
Q psy10471 160 GVLKALSFL----------------------------FEYIGE---MGKDYIYAVTPLLEDALM----DRDLVHRQTACA 204 (318)
Q Consensus 160 ~vl~al~~i----------------------------~~~lg~---~~~~yl~~iiP~l~~~l~----~~~~~~R~~a~~ 204 (318)
++..|+-.. +..+.. .+..|. -|.+.+.++ +=|...|++++.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~---~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYR---EPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHH---HHHHHHHHhcccccccHHHHHHHHH
Confidence 766665411 111111 012222 255555554 347899999999
Q ss_pred HHHHHhhhhc
Q psy10471 205 TIKHMALGVY 214 (318)
Q Consensus 205 ~i~~la~~~~ 214 (318)
.+..++..-.
T Consensus 567 aL~~Ls~~~p 576 (1133)
T KOG1943|consen 567 ALHKLSLTEP 576 (1133)
T ss_pred HHHHHHHhhH
Confidence 9999877654
No 110
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.064 Score=55.48 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=109.4
Q ss_pred hhhchHHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc---cchHHHHHHhcCCc
Q psy10471 80 LKAHKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPE 154 (318)
Q Consensus 80 L~d~~~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~---~vip~L~~~~~d~~ 154 (318)
+.+++...|..|++.+-.-.. .|.. .+.+..+++....+...++++..-+...++. .|. -+++.+++.+.||+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~-~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d~N 105 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMS-LGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQDPN 105 (757)
T ss_pred ccccChHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccCCC
Confidence 456677788888888643221 4432 3555555555544445566655544444322 122 57788999999999
Q ss_pred chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH-HHHHHHhhhhcc
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA-LTHLLNYVWPNI 233 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~-i~hll~~l~~~i 233 (318)
+.+|..+++.++.+= .+..+..+++.+.++++|+.+-+|++|+-++..+=..-+ .-+.+. ..+++..+ .
T Consensus 106 ~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~g~~~~l~~l---~ 175 (757)
T COG5096 106 EEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYHELGLIDILKEL---V 175 (757)
T ss_pred HHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhhcccHHHHHHHH---h
Confidence 999999988877542 245678889999999999999999999999988743322 112222 44444444 4
Q ss_pred cCCChHHHHHHHHHHHHHHHH
Q psy10471 234 FETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 234 ~d~~~~vr~~ii~~i~~i~~a 254 (318)
.|++|.+..+++.++..+..-
T Consensus 176 ~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 176 ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hCCCchHHHHHHHHHHHhchh
Confidence 568999999888888777554
No 111
>KOG1993|consensus
Probab=96.46 E-value=0.25 Score=50.88 Aligned_cols=188 Identities=16% Similarity=0.194 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-c-hHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhH
Q psy10471 46 QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-H-KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNR 123 (318)
Q Consensus 46 R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~-~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R 123 (318)
+.|...+.|.-|....+.++...|..-.. +.++-.| + .+-+||-..+-+|+=...=-+. ..|
T Consensus 461 KDAiYaa~g~~a~~l~~~~dF~~Wl~~~l-lpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~---------------e~k 524 (978)
T KOG1993|consen 461 KDAIYAAFGLAAYELSNILDFDKWLQEAL-LPELANDHGNSRIIRRRVAWILGQWVSVQQKL---------------ELK 524 (978)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHhh-CHHhhhcccchhHHHHHHHHHHhhhhheechH---------------hHH
Confidence 56777888888876555665566655322 1122244 3 3347888888888755411111 122
Q ss_pred HHHHHHHHHHHhhcCcccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHH---ccccccchhhhHHHHHHHH---hcCC-
Q psy10471 124 VCTTVAIAIVAETCSPFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYI---GEMGKDYIYAVTPLLEDAL---MDRD- 195 (318)
Q Consensus 124 ~~~~~ai~~i~~~~~p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~l---g~~~~~yl~~iiP~l~~~l---~~~~- 195 (318)
.+.+.| +.+.++|+ +.-++-....++..+.+-. .+.|-||++.+--.+...+ ..+|
T Consensus 525 ~l~Y~a----------------~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dt 588 (978)
T KOG1993|consen 525 PLLYCA----------------FLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDT 588 (978)
T ss_pred HHHHHH----------------HHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 222221 44455554 3334444444444443322 2234445543333333333 2333
Q ss_pred -HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh
Q psy10471 196 -LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL 268 (318)
Q Consensus 196 -~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l 268 (318)
..+--....+|+++.+.+. .++..+..++|.+|+.-. +.+=+|.+++.++..++.++|.+. +.|.+.|++
T Consensus 589 k~~VL~~ls~lI~r~~e~I~--P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI 661 (978)
T KOG1993|consen 589 KTSVLNLLSTLIERVSEHIA--PYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI 661 (978)
T ss_pred HHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 2444455556666655553 556777788888876643 456689999999999999999864 899999999
No 112
>KOG1943|consensus
Probab=96.45 E-value=1 Score=47.99 Aligned_cols=244 Identities=16% Similarity=0.138 Sum_probs=136.3
Q ss_pred hhhhHHHHHHHHHHHhccCcCCC--hHhHHHHHHhhcCCC--------CHHHHHHHHHHHHHHHhhCCCCCChhhHHH--
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPH--LKNLVEIIEHGLVDE--------QQKVQENCIDLVGRIADRGPEYVSAREWMR-- 71 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~--l~~l~~~l~~~l~d~--------~~~vR~aa~~~LG~la~~~~~~i~~~~~~~-- 71 (318)
.=|.|.-++++||. .++.+| +..++|+++..|.-+ ...||.||+-.+=.++.... +.+..|
T Consensus 396 aWHgacLaLAELA~---rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays----~~~l~p~l 468 (1133)
T KOG1943|consen 396 AWHGACLALAELAL---RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS----PSDLKPVL 468 (1133)
T ss_pred HHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC----hhhhhHHH
Confidence 34777777777776 445555 568999998877643 36699999765555554322 223333
Q ss_pred --HHHHH-HHHhhhchHHHHHHHHHHHHH----HHhh---------hCH---------H---------------HHHHHH
Q psy10471 72 --ICFEL-LELLKAHKKAIRRATVNTFGY----IAKA---------IGP---------H---------------DVLATL 111 (318)
Q Consensus 72 --il~~L-l~~L~d~~~~vR~~av~~lg~----la~~---------igp---------~---------------~~l~~L 111 (318)
+...| ...+=|++-..||+|--+|-. .++. ++- | .++++|
T Consensus 469 ~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L 548 (1133)
T KOG1943|consen 469 QSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHL 548 (1133)
T ss_pred HHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHH
Confidence 33332 344566788899998777633 2211 110 0 122222
Q ss_pred HHh-hcccchhhHHHHHHHHHHHHhhc---CcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc-c---------cc
Q psy10471 112 LNN-LKVQERQNRVCTTVAIAIVAETC---SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE-M---------GK 177 (318)
Q Consensus 112 l~~-Lk~~~~~~R~~~~~ai~~i~~~~---~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~-~---------~~ 177 (318)
+.+ +-.=+...|-..+.++..++... ....++|.++...-..+.+.+.++..+.+.+.-++-. . -.
T Consensus 549 ~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i 628 (1133)
T KOG1943|consen 549 LTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI 628 (1133)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Confidence 221 11112246667777776655433 2347888888888888888887777777766544321 1 11
Q ss_pred cchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 178 DYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 178 ~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
.-+++++|.+...-..+. ...|+.....|+.+..+-.....+-.+....-.+.+++.+.+ ..|..+..++..++...
T Consensus 629 ~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 629 AGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred hhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHH
Confidence 112334555554443443 577777777777765443211112222223333334443344 78888888888887765
No 113
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.44 E-value=0.045 Score=51.06 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc
Q psy10471 155 LNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI 233 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i 233 (318)
..||.-+++....||+.+|. .....++-..|.+.-++..+...+|-...+.++.--.-++. .-...+.-++.-++|++
T Consensus 69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGL 147 (307)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccc
Confidence 37899999999999999997 35566666777777777788899999999999876554421 12245556667778999
Q ss_pred cCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc
Q psy10471 234 FETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH 270 (318)
Q Consensus 234 ~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~ 270 (318)
-|++.++-..++..++.+..++|.+.|.+.+|-.+..
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~ 184 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT 184 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc
Confidence 9899999999999999999999999999988888864
No 114
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.40 E-value=0.0076 Score=36.12 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=26.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 183 VTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
++|.+.+.++|.++.+|++++..++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999998765
No 115
>KOG1060|consensus
Probab=96.34 E-value=0.22 Score=51.22 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=95.1
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 103 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig 103 (318)
-|-++-++...-|+|...+|.|--|++.+.=++|-. .+.-.|...|+..|..+ +.+|...+.++..++. -.
T Consensus 282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-------~~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~-~~ 352 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-------NQVTKIAKALVRLLRSN-REVQYVVLQNIATISI-KR 352 (968)
T ss_pred CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-------HHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHh-cc
Confidence 444677888888999999999999999988887752 34455677777777763 3477777777777775 33
Q ss_pred HHHHHHHHHHhh-cccch-hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh
Q psy10471 104 PHDVLATLLNNL-KVQER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY 181 (318)
Q Consensus 104 p~~~l~~Ll~~L-k~~~~-~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~ 181 (318)
|.-..+++-+.+ +..+- +......+-+..++.+..-.++++-|..-.++++.++-...++||+.|...++..- +
T Consensus 353 ~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----~ 428 (968)
T KOG1060|consen 353 PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT----D 428 (968)
T ss_pred hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh----h
Confidence 322222222211 11111 22222233333333332222333333333344444455566666666666555322 3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471 182 AVTPLLEDALMDRDLVHRQTACATIKHMAL 211 (318)
Q Consensus 182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~ 211 (318)
..+-.+..+++..+..+-..+..+|..|.+
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 344455555555555555555555554433
No 116
>KOG1078|consensus
Probab=96.34 E-value=0.65 Score=47.90 Aligned_cols=73 Identities=21% Similarity=0.169 Sum_probs=54.6
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 101 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ 101 (318)
.+...++++.+-..+++.+.+|-.-|++++-.+....+ +++.|.+..|=-+++.++...|.+|++++..+|-.
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-----r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-----RELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-----hhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 55567788888889999999999888888877765433 34444444343445778899999999999998863
No 117
>KOG1060|consensus
Probab=96.33 E-value=0.19 Score=51.69 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=111.6
Q ss_pred HHHHhhhchHHHHHHHHHH-HHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcC
Q psy10471 76 LLELLKAHKKAIRRATVNT-FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRV 152 (318)
Q Consensus 76 Ll~~L~d~~~~vR~~av~~-lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d 152 (318)
|.++|.+++++-+.+|++- ++.+|+.-+-..+.+..++|...++-.++..+..-+--.||.--- ---+..+-+.++|
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~D 119 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKD 119 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcC
Confidence 4566678777777777766 588887766677888888888776667777777666555544221 1456679999999
Q ss_pred CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc--hhHHHHHHHhhh
Q psy10471 153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC--EDALTHLLNYVW 230 (318)
Q Consensus 153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~--~~~i~hll~~l~ 230 (318)
|++.+|..++.+++.|=- .--.|-++-.+.++.+|..+-||+.||-+|-.+ .-.+. .+.+..+...+
T Consensus 120 pN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL----YsLd~e~k~qL~e~I~~L- 188 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL----YSLDPEQKDQLEEVIKKL- 188 (968)
T ss_pred CcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH----hcCChhhHHHHHHHHHHH-
Confidence 999999999999886532 112245556666777788899999999999655 32222 22333333333
Q ss_pred hcccCCChHHHHHHHHHHHHHH
Q psy10471 231 PNIFETSPHLVQAFMDAVEGLR 252 (318)
Q Consensus 231 ~~i~d~~~~vr~~ii~~i~~i~ 252 (318)
+.|.++-|-..+.-+.+.+|
T Consensus 189 --LaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 189 --LADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred --hcCCCCcchhHHHHHHHHhc
Confidence 44577777777777776664
No 118
>KOG1248|consensus
Probab=96.28 E-value=0.52 Score=50.55 Aligned_cols=222 Identities=12% Similarity=0.179 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHh-cc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH
Q psy10471 8 GIKIVQQIAILM-GC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK 85 (318)
Q Consensus 8 ~l~~i~~La~~~-g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~ 85 (318)
+-+.|+++.... |. ....++..+...+.+-+++-....|...+++|..|-+..+.+. -..++..+.+++=.+|+.+.
T Consensus 674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~-~~~i~k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH-CDLIPKLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHhcccccH
Confidence 446777777751 11 3566677777777777777777789999999999998766211 12333344433333488777
Q ss_pred HHHHHHHHHHHHHHh---hh--C--H-HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchH
Q psy10471 86 AIRRATVNTFGYIAK---AI--G--P-HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV 157 (318)
Q Consensus 86 ~vR~~av~~lg~la~---~i--g--p-~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v 157 (318)
.-|+.|..++..+++ .. | | ...++..+..+... ++ ..+..+
T Consensus 753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag---------------------------l~----gd~~~~ 801 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG---------------------------LV----GDSTRV 801 (1176)
T ss_pred HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh---------------------------hc----ccHHHH
Confidence 778887777766663 11 1 1 22333333333211 00 001111
Q ss_pred HHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc---
Q psy10471 158 QNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI--- 233 (318)
Q Consensus 158 ~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i--- 233 (318)
...-+=++..++.-.+. .-.+++++++..+.-.+....+.+++.|...+..++.... +..+...++-+++.+
T Consensus 802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p----e~~l~~~~~~LL~sll~l 877 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP----EECLSPHLEELLPSLLAL 877 (1176)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC----HHHHhhhHHHHHHHHHHH
Confidence 11102233333322222 2356788888888888889999999999998877755542 222333333334444
Q ss_pred -cCCChHHHHHHHHHHHHHHHHcChhhHHHhHH
Q psy10471 234 -FETSPHLVQAFMDAVEGLRVALGPVRILQYVL 265 (318)
Q Consensus 234 -~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl 265 (318)
.|...++|..+-..++.++.-.|.+.+.+++-
T Consensus 878 s~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 878 SHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 45678899999999999999999987666544
No 119
>KOG0168|consensus
Probab=96.26 E-value=0.51 Score=49.10 Aligned_cols=182 Identities=16% Similarity=0.198 Sum_probs=117.6
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCC-CCCC---hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC
Q psy10471 30 LVEIIEHGLVDE-QQKVQENCIDLVGRIADRGP-EYVS---AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG 103 (318)
Q Consensus 30 l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~-~~i~---~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig 103 (318)
=+..++..|+.. +|..+-.++.-+-+.-.-+- +..+ .+.+.|.+. .+|++ .++.+--.|++++.++.+.+.
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv---~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLV---ALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHH---HHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 345567777776 67777777766666554322 2222 467777755 55588 688999999999999999887
Q ss_pred HH-------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhh----cCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471 104 PH-------DVLATLLNNLKVQER-QNRVCTTVAIAIVAET----CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 171 (318)
Q Consensus 104 p~-------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~----~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~ 171 (318)
+. ..++.|+.-|..=++ .+=--..+|+-+|+.. |-....+-+.+.-+..-+...|+.++....++|+.
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 64 356666665542222 1101122333333311 11112222222222333456788899999999999
Q ss_pred HccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 172 IGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 172 lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
+...--.|+-..+|.+..++...|...-...+..+..++....
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 9887777888899999999999998888888888888877664
No 120
>KOG1059|consensus
Probab=96.22 E-value=0.3 Score=49.84 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=144.6
Q ss_pred CcCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q psy10471 22 AILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 22 ~~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~ 100 (318)
-+.|-+ ++|-+-+.-+|+...|-+|.-|+..+=.+.-..+ +.+-|-+..|-+-|.|+.++|..+|+..+..+|.
T Consensus 136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 356666 4677778888888889999888888877765432 2333445577788899999999999999999997
Q ss_pred hhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471 101 AIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------FTVLPALMNEYRVPELNVQNGVLKALSFLFEY 171 (318)
Q Consensus 101 ~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~ 171 (318)
.- |. .+-+.+.+.|.+.+. -.+... |-.++-...| -.++|++.+.++.-.. ..-+-+|+..+...
T Consensus 211 Kn-PknyL~LAP~ffkllttSsN--NWmLIK-iiKLF~aLtplEPRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 211 KN-PQNYLQLAPLFYKLLVTSSN--NWVLIK-LLKLFAALTPLEPRLGKKLIEPITELMESTVA--MSLLYECVNTVVAV 284 (877)
T ss_pred hC-CcccccccHHHHHHHhccCC--CeehHH-HHHHHhhccccCchhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheee
Confidence 53 32 233344444433221 011111 1123333333 2788888887754221 11122333333322
Q ss_pred -H--cc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHH
Q psy10471 172 -I--GE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA 247 (318)
Q Consensus 172 -l--g~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~ 247 (318)
+ |. ....-+..-+..+..++.+.|++.|=...-+++.++..-. ..++.....++.++-|.++.+|..+++.
T Consensus 285 s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp-----~~Vqa~kdlIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 285 SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP-----KAVQAHKDLILRCLDDKDESIRLRALDL 359 (877)
T ss_pred hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH-----HHHHHhHHHHHHHhccCCchhHHHHHHH
Confidence 1 11 2222333455666777889999999888888877755432 4555556677888889999999999999
Q ss_pred HHHHHHHcChhhHHHhHHHHhcc
Q psy10471 248 VEGLRVALGPVRILQYVLQGLFH 270 (318)
Q Consensus 248 i~~i~~alG~~~~~~~vl~~l~~ 270 (318)
+..|+ ..+.++.-|-..|-|
T Consensus 360 l~gmV---skkNl~eIVk~LM~~ 379 (877)
T KOG1059|consen 360 LYGMV---SKKNLMEIVKTLMKH 379 (877)
T ss_pred HHHHh---hhhhHHHHHHHHHHH
Confidence 98885 456666666666655
No 121
>KOG1993|consensus
Probab=96.19 E-value=0.71 Score=47.74 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=118.2
Q ss_pred HHhhcCCCCHH-HHHHHHHHHHHHHhhCC-CCCChhhHHHHHH-HHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471 34 IEHGLVDEQQK-VQENCIDLVGRIADRGP-EYVSAREWMRICF-ELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLA 109 (318)
Q Consensus 34 l~~~l~d~~~~-vR~aa~~~LG~la~~~~-~~i~~~~~~~il~-~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~ 109 (318)
++.+++|++.. ||-+|+.|+--..+.-. -.-+...+.+.++ .+..+++. .....|-..+.+++.+.+.++++.. +
T Consensus 531 ~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~-P 609 (978)
T KOG1993|consen 531 FLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA-P 609 (978)
T ss_pred HHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-H
Confidence 68899998655 69999999998886332 1001122223333 45567777 6677888889998888777776521 1
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC--CcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471 110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV--PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187 (318)
Q Consensus 110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d--~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l 187 (318)
... +++..+=+.++. .++-.+.+++.++.++..++|.....+.+-+.|.+
T Consensus 610 ~~~----------------------------~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI 661 (978)
T KOG1993|consen 610 YAS----------------------------TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI 661 (978)
T ss_pred HHH----------------------------HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 110 011112222322 34557899999999999999998888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471 188 EDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ 266 (318)
Q Consensus 188 ~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~ 266 (318)
.-...-.++.+--...+.++-=...+... -..+.+.-+.|++.+.|. .+.+-..+++.-|.+=..--++.++..|-..
T Consensus 662 el~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE-~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~ 740 (978)
T KOG1993|consen 662 ELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIE-QSTENLPTVLMIISSYILLDNTVFLNDYAFG 740 (978)
T ss_pred HHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 87775555554433333333221112111 123333444444444332 3334444566666666555566655555544
Q ss_pred Hh
Q psy10471 267 GL 268 (318)
Q Consensus 267 ~l 268 (318)
..
T Consensus 741 i~ 742 (978)
T KOG1993|consen 741 IF 742 (978)
T ss_pred HH
Confidence 44
No 122
>KOG1243|consensus
Probab=96.09 E-value=0.014 Score=59.07 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=127.0
Q ss_pred CchhhhHHHHHHHHHHHhccCcCC-ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471 2 SSDKNLGIKIVQQIAILMGCAILP-HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~~~~P-~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L 80 (318)
++||+.=+..|.++-.-.+..-.+ +-+++.|-+...++|.++..|+.+++++..+|..-++...-.|.++.+. ...
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~a---r~q 417 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLA---RLQ 417 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHH---hhC
Confidence 578888888888887755543322 3357999999999999999999999999999987665432466777665 333
Q ss_pred hhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcC
Q psy10471 81 KAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRV 152 (318)
Q Consensus 81 ~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d 152 (318)
.|++..+|--+..++|.|+..+.|. .+..++.+.+|+.-...|.....++....+.+.. ..++|.+.-.+-|
T Consensus 418 ~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd 497 (690)
T KOG1243|consen 418 PDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVD 497 (690)
T ss_pred ccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccC
Confidence 5677789988888888888777665 3455666777877777788887777654433321 3788888888899
Q ss_pred CcchHHHHHHHHHHHHHHHHcc
Q psy10471 153 PELNVQNGVLKALSFLFEYIGE 174 (318)
Q Consensus 153 ~~~~v~~~vl~al~~i~~~lg~ 174 (318)
++..++....+++..+...+..
T Consensus 498 ~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 498 PEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cccchhhHHHHHHHHHHhhhhh
Confidence 9999999999998887766554
No 123
>KOG1062|consensus
Probab=96.08 E-value=2.2 Score=44.28 Aligned_cols=222 Identities=17% Similarity=0.130 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCCC---CCChhhHHHHHH-----------HHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471 41 EQQKVQENCIDLVGRIADRGPE---YVSAREWMRICF-----------ELLELLKAHKKAIRRATVNTFGYIAKAIGPHD 106 (318)
Q Consensus 41 ~~~~vR~aa~~~LG~la~~~~~---~i~~~~~~~il~-----------~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~ 106 (318)
++++.|..|++.||.+-.+... |+...-+++++. .+++.|+|+..++||.|++-.-.+.+.-.=..
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~ 385 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV 385 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH
Confidence 4688899999999988765442 322344444332 25789999999999999999988887655556
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 184 (318)
Q Consensus 107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii 184 (318)
+...|+..|...+...|.-.+-.|..++|++.|. --+..+++++...-.-|+..+...+..+...--...-.| ++.
T Consensus 386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y--~~~ 463 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY--AVL 463 (866)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH--HHH
Confidence 7888888888667777778888888888998874 233445555544333333333333322221110000011 111
Q ss_pred HHHHHHHh-----cCCHHHHHHHHHHHHHHhh-hhcCCC-------ch-hHHHHHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471 185 PLLEDALM-----DRDLVHRQTACATIKHMAL-GVYGFG-------CE-DALTHLLNYVWPNIFETSPHLVQAFMDAVEG 250 (318)
Q Consensus 185 P~l~~~l~-----~~~~~~R~~a~~~i~~la~-~~~~~~-------~~-~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~ 250 (318)
-.+..+.. -....+-|-+.++||.=.. -+.+.+ .| +.+..+...+... ..+...++.++.++-.
T Consensus 464 rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~--~s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 464 RLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH--SSDSTTKGYALTALLK 541 (866)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHH
Confidence 11111111 1123345556666665441 112111 12 3333333332222 1346778888888888
Q ss_pred HHHHcChhhHHHhHHHHh
Q psy10471 251 LRVALGPVRILQYVLQGL 268 (318)
Q Consensus 251 i~~alG~~~~~~~vl~~l 268 (318)
+....+.. .+.+-+.+
T Consensus 542 LSsr~~s~--~~ri~~lI 557 (866)
T KOG1062|consen 542 LSSRFHSS--SERIKQLI 557 (866)
T ss_pred HHhhcccc--HHHHHHHH
Confidence 88777764 45555555
No 124
>KOG1949|consensus
Probab=96.03 E-value=0.28 Score=49.96 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=86.3
Q ss_pred cCCChHhHHH-----HHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH----HHHHHhhhchHHHHHHHHH
Q psy10471 23 ILPHLKNLVE-----IIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF----ELLELLKAHKKAIRRATVN 93 (318)
Q Consensus 23 ~~P~l~~l~~-----~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~----~Ll~~L~d~~~~vR~~av~ 93 (318)
...-+++++- ++...|+-+|..||.+|+..+=.+----+|..-.++..+++. .|.++|.|+-+.||..|+.
T Consensus 163 ~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~ 242 (1005)
T KOG1949|consen 163 VRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAIL 242 (1005)
T ss_pred HhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4445555553 345567778999999998877665443334332345555554 3567789999999999988
Q ss_pred HHHHHHhh----hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471 94 TFGYIAKA----IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLF 169 (318)
Q Consensus 94 ~lg~la~~----igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~ 169 (318)
.+..+-.. +.|. ++..+|+-.-++ .-.|...+||-++++.+..+.
T Consensus 243 gv~k~~s~fWe~iP~~-i~~~ll~kI~d~------------------------------~a~dt~s~VR~svf~gl~~~l 291 (1005)
T KOG1949|consen 243 GVCKITSKFWEMIPPT-ILIDLLKKITDE------------------------------LAFDTSSDVRCSVFKGLPMIL 291 (1005)
T ss_pred HHHHHHHHHHHHcCHH-HHHHHHHHHHHH------------------------------hhhccchheehhHhcCcHHHH
Confidence 87654432 3333 333333322110 012222355555555555554
Q ss_pred HHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471 170 EYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 170 ~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~l 209 (318)
. ...+-+-+.+++|.+...+.|.+..+|-++.+.+-.+
T Consensus 292 ~--np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 292 D--NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred c--CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 3 2333445555666666666666666666666555443
No 125
>KOG0414|consensus
Probab=96.03 E-value=0.22 Score=53.20 Aligned_cols=177 Identities=14% Similarity=0.227 Sum_probs=118.3
Q ss_pred ChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHh
Q psy10471 26 HLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-d~~~~vR~~av~~lg~la~ 100 (318)
-+....|.+...+++ .+|..|.||-.+||.+.--+..+ -.+.+|.++ .++. .+++.+|--++.++|-++=
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f--ces~l~llf---timeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF--CESHLPLLF---TIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH---HHHhcCCCceeeecchheccchhh
Confidence 456677788888876 36999999999999987655443 256677766 4445 5789999999999998873
Q ss_pred hhCHH---HHHHHHHHhhcccchhhHHHHHHHHH--HHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc
Q psy10471 101 AIGPH---DVLATLLNNLKVQERQNRVCTTVAIA--IVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM 175 (318)
Q Consensus 101 ~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~--~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~ 175 (318)
. =|+ ..-++|..-|+|++-.+|..+...+. ++++...--..++-.-.-+.||+.+++..+ ..+|+-+..+
T Consensus 991 ~-fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlA----k~FF~Els~k 1065 (1251)
T KOG0414|consen 991 R-FPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLA----KSFFKELSSK 1065 (1251)
T ss_pred h-cccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHH----HHHHHHhhhc
Confidence 2 232 23567888899888888888777665 344433222445555556678887766533 3577777766
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
. +-+++++|-+..-+.++. .-+.....+++.+...++
T Consensus 1066 ~-n~iynlLPdil~~Ls~~~-l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1066 G-NTIYNLLPDILSRLSNGN-LEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred c-cchhhhchHHHHhhccCc-ccchhhHHHHHHHHHHhc
Confidence 6 677888999998887773 222333334444433334
No 126
>KOG1078|consensus
Probab=95.97 E-value=0.26 Score=50.72 Aligned_cols=147 Identities=12% Similarity=0.194 Sum_probs=77.5
Q ss_pred HHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhhchHHH
Q psy10471 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKAHKKAI 87 (318)
Q Consensus 10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d~~~~v 87 (318)
+++..+....+..+.| -+..+-+.|..+.+-.|.+|.++|.++|..-+.-+. ..++. .+.+|.+.++
T Consensus 267 rai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE-------~lItd~NrsI 335 (865)
T KOG1078|consen 267 RAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLE-------SLITDSNRSI 335 (865)
T ss_pred HHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHH-------hhhcccccch
Confidence 3444444444444555 444455667777888899999999999998775443 13333 2335555554
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHhhc----ccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcCC-cchHHHH
Q psy10471 88 RRATVNTFGYIAKAIGPHDVLATLLNNLK----VQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVP-ELNVQNG 160 (318)
Q Consensus 88 R~~av~~lg~la~~igp~~~l~~Ll~~Lk----~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~-~~~v~~~ 160 (318)
---|+-++-. .|-..-+++|++..- +=+-.....+++||..++..+-. ...++.|.+.+++. .-+-+++
T Consensus 336 at~AITtLLK----TG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~a 411 (865)
T KOG1078|consen 336 ATLAITTLLK----TGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRA 411 (865)
T ss_pred hHHHHHHHHH----hcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHH
Confidence 4444444322 333323333333221 00001222344555444444321 36677777777663 3455577
Q ss_pred HHHHHHHHHHH
Q psy10471 161 VLKALSFLFEY 171 (318)
Q Consensus 161 vl~al~~i~~~ 171 (318)
++.++..+.+.
T Consensus 412 ivd~Ii~iie~ 422 (865)
T KOG1078|consen 412 IVDAIIDIIEE 422 (865)
T ss_pred HHHHHHHHHHh
Confidence 77777666553
No 127
>KOG1967|consensus
Probab=95.90 E-value=0.12 Score=53.92 Aligned_cols=142 Identities=19% Similarity=0.324 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-------------------HHHHHHHHHhhcccchhhHHHHHHHHH
Q psy10471 71 RICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-------------------HDVLATLLNNLKVQERQNRVCTTVAIA 131 (318)
Q Consensus 71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-------------------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~ 131 (318)
++...+++.|++ +++-..+.+.|..+.....| .++.+.|+...+.+....|..-..+++
T Consensus 815 ~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 815 EIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred hHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 455556666676 55666777778777665554 156777888887555555666666665
Q ss_pred HH-H----hhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC---HHHHHH
Q psy10471 132 IV-A----ETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD---LVHRQT 201 (318)
Q Consensus 132 ~i-~----~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~---~~~R~~ 201 (318)
.+ . ....|. .++|-|++.+.-|+..+|-..+.++.-...-.+.-...|+..++|.+..+-.+.+ ..+|..
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHH
Confidence 32 2 123343 7888999999999999998899999888877777788899999999999988776 789999
Q ss_pred HHHHHHHHhhhhc
Q psy10471 202 ACATIKHMALGVY 214 (318)
Q Consensus 202 a~~~i~~la~~~~ 214 (318)
|.+.+..+.+...
T Consensus 973 ALqcL~aL~~~~P 985 (1030)
T KOG1967|consen 973 ALQCLNALTRRLP 985 (1030)
T ss_pred HHHHHHHHhccCC
Confidence 9999988877553
No 128
>KOG1991|consensus
Probab=95.85 E-value=1.4 Score=46.68 Aligned_cols=186 Identities=12% Similarity=0.132 Sum_probs=108.7
Q ss_pred hhhhHHHHHHHHHHHhccC-cCCChHhHHHHHHhhc----CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH--HHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGCA-ILPHLKNLVEIIEHGL----VDEQQKVQENCIDLVGRIADRGPEYVSAREWMR--ICFEL 76 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l----~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~--il~~L 76 (318)
-+-+++.++-.++.-=|.. +.+-++=++.++...- .+.+++....|+.++|.+++-.-..-..+.-+. +...+
T Consensus 388 p~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 388 PDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred CcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 3456777888888866553 3333333444443222 234688899999999999973321111122222 22345
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHh-hhC-HH---HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcC---c--ccchHH
Q psy10471 77 LELLKAHKKAIRRATVNTFGYIAK-AIG-PH---DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCS---P--FTVLPA 145 (318)
Q Consensus 77 l~~L~d~~~~vR~~av~~lg~la~-~ig-p~---~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~---p--~~vip~ 145 (318)
+..++++---.|.-|++.+++.++ ... |. .++..-.+.|+ +.++.+|+..+.|+...-..+- + ...+|.
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 556678777799999999999994 222 33 34555667777 6677899999999964322222 2 245555
Q ss_pred HHH----HhcCCcchHHHHHHHHHHHHHHHHccccccchhh----hHHHHHHHHh
Q psy10471 146 LMN----EYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA----VTPLLEDALM 192 (318)
Q Consensus 146 L~~----~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~----iiP~l~~~l~ 192 (318)
.|+ ..++-|.+.-+.+++ .+....+....||-.+ +.-.|.+++.
T Consensus 548 ~mq~lL~L~ne~End~Lt~vme---~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 548 IMQELLKLSNEVENDDLTNVME---KIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHHHHHHHHhcchhHHHHHHH---HHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 444 444444444444444 4444556666667654 4444555555
No 129
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.81 E-value=0.24 Score=50.62 Aligned_cols=140 Identities=12% Similarity=0.128 Sum_probs=89.0
Q ss_pred cCCChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCCCC----------CC--hhhHHHHHHHHHHHhhh-chH
Q psy10471 23 ILPHLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGPEY----------VS--AREWMRICFELLELLKA-HKK 85 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~~~----------i~--~~~~~~il~~Ll~~L~d-~~~ 85 (318)
..-+-.+++..+.++++. .++.+|.+|+.++|.++...... .. .+++.+-+...+....+ .+.
T Consensus 425 ~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 504 (618)
T PF01347_consen 425 VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDE 504 (618)
T ss_dssp -----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-H
T ss_pred cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCH
Confidence 335556788877777775 36789999999999988532211 11 46666666655543223 455
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhccc---chhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCC--cchHHHH
Q psy10471 86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ---ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP--ELNVQNG 160 (318)
Q Consensus 86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~---~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~--~~~v~~~ 160 (318)
..+..+++++|.++- ...++.|+..+..+ ....|..++.|+..+++.| |..+.+.|+.+|.+. +.++|.+
T Consensus 505 ~~~~~~LkaLgN~g~----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 505 EEKIVYLKALGNLGH----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHHHHHHHHHHHHT-----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-HHHHHH
T ss_pred HHHHHHHHHhhccCC----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCChhHHHH
Confidence 788999999998763 24678888888766 2367888888776554443 668888899988765 3578877
Q ss_pred HHHHHHH
Q psy10471 161 VLKALSF 167 (318)
Q Consensus 161 vl~al~~ 167 (318)
++..+..
T Consensus 580 A~~~lm~ 586 (618)
T PF01347_consen 580 AYLILMR 586 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666654
No 130
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.80 E-value=1.2 Score=41.78 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=100.2
Q ss_pred HHHHhcCCcchHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHH----h---cCCHHHHHHHHHHHHHHhhhhcCC-
Q psy10471 146 LMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL----M---DRDLVHRQTACATIKHMALGVYGF- 216 (318)
Q Consensus 146 L~~~~~d~~~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l----~---~~~~~~R~~a~~~i~~la~~~~~~- 216 (318)
.+..|+...++.| ..++..++.+++.+|..+.++++.|+-.+.... + ..-|.+|...-.+++.+...+-..
T Consensus 76 vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l 155 (319)
T PF08767_consen 76 VLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPAL 155 (319)
T ss_dssp HHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHH
Confidence 4457776767776 679999999999999988899987766555444 2 123899999999999998876311
Q ss_pred --CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh-------hhHHHhHHHHhcc--------ccccchHHH
Q psy10471 217 --GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFH--------PARKVRDVY 279 (318)
Q Consensus 217 --~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~-------~~~~~~vl~~l~~--------~a~~~r~~~ 279 (318)
-..+.+..+...+.-++++++.++-...++++..+...+.. +++..|.++.+.+ .++..-+..
T Consensus 156 ~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q 235 (319)
T PF08767_consen 156 LQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQ 235 (319)
T ss_dssp HHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 11355566667777778889999999888888887777765 5677777776632 444455566
Q ss_pred HHHHHHhh
Q psy10471 280 WKIYNSLY 287 (318)
Q Consensus 280 w~i~~~~~ 287 (318)
+.++..+.
T Consensus 236 ~~iL~~Lf 243 (319)
T PF08767_consen 236 SQILSNLF 243 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 131
>KOG0891|consensus
Probab=95.77 E-value=0.03 Score=64.27 Aligned_cols=120 Identities=19% Similarity=0.333 Sum_probs=91.8
Q ss_pred HHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhh-chHH
Q psy10471 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKA-HKKA 86 (318)
Q Consensus 10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d-~~~~ 86 (318)
.....+.....-.++||+.+++..+.|.++|..+.|-.+++.++|++|..+|..+. .++.++.+. +.+.| .+..
T Consensus 629 ~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~---~~l~~~s~~~ 705 (2341)
T KOG0891|consen 629 KLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLII---KMLQDQSSLG 705 (2341)
T ss_pred HHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHH---HHHHHhhhhh
Confidence 33344444222358999999999999999999999999999999999999995543 256666655 55567 5667
Q ss_pred HHHHHHHHHHHHHhhhC----HH----HHHHHHHHhhcccch-hhHHHHHHHHHH
Q psy10471 87 IRRATVNTFGYIAKAIG----PH----DVLATLLNNLKVQER-QNRVCTTVAIAI 132 (318)
Q Consensus 87 vR~~av~~lg~la~~ig----p~----~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~ 132 (318)
.|+++.+++|++.+.-| |+ .+++.|.+.++.+.. ..|..+...++.
T Consensus 706 rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 706 KRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL 760 (2341)
T ss_pred chhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence 89999999999988755 54 578888888886655 588888887763
No 132
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.73 E-value=0.14 Score=47.22 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=84.8
Q ss_pred CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC----C----hhhHHHHHHHHHHHhh-----hchHHHH
Q psy10471 22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV----S----AREWMRICFELLELLK-----AHKKAIR 88 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i----~----~~~~~~il~~Ll~~L~-----d~~~~vR 88 (318)
.+..+.+-++|.++-++.|.++.+|.-++..|..+.+..+... . ..-+.+.+...+-.|. ++...+=
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 3555666677777888889899999999999999998766432 0 0111111111111111 1222222
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHH-HHHHHHHHhhcCcccchHHHHHHhc---CCcchHHHHHHHH
Q psy10471 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCT-TVAIAIVAETCSPFTVLPALMNEYR---VPELNVQNGVLKA 164 (318)
Q Consensus 89 ~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~-~~ai~~i~~~~~p~~vip~L~~~~~---d~~~~v~~~vl~a 164 (318)
.+|..++-.+.+... .++...|... .+.+. +. + |-+... .+...+....++.
T Consensus 192 ~~ay~~L~~L~~~~~-------------~~~~~~r~~~l~~~l~---e~-----I---L~~~~~~~~~~~~~l~~~ll~~ 247 (282)
T PF10521_consen 192 QAAYPALLSLLKTQE-------------NDDSNPRSTWLDKILR---EG-----I---LSSMEHESSFSYPRLRTVLLQQ 247 (282)
T ss_pred HHHHHHHHHHHHhhc-------------cCCcccchHHHHHHHH---HH-----H---hhhceeccccCchhHHHHHHHH
Confidence 333333333332110 1111111111 11110 00 0 111111 2237788999999
Q ss_pred HHHHHHHHccccccchhhhHHHHHHHHhcCC
Q psy10471 165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRD 195 (318)
Q Consensus 165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~ 195 (318)
+..+++.+|..+..|+..++|.+.+.+++.+
T Consensus 248 l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 248 LPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999887764
No 133
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.68 E-value=0.59 Score=47.41 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=95.0
Q ss_pred CCChHhHHHHHHhhcCCC----CHHHHHHHHHHHHHHHhhCCCCCC------hhhHHHHHHHHHHHh-hhchHHHHHHHH
Q psy10471 24 LPHLKNLVEIIEHGLVDE----QQKVQENCIDLVGRIADRGPEYVS------AREWMRICFELLELL-KAHKKAIRRATV 92 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~----~~~vR~aa~~~LG~la~~~~~~i~------~~~~~~il~~Ll~~L-~d~~~~vR~~av 92 (318)
.-+-++++..+.++++++ ++.+|.+|+.++|.++......-. ..++.+-+...++.. ++.+...+..++
T Consensus 388 ~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 467 (574)
T smart00638 388 RYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYL 467 (574)
T ss_pred hcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHH
Confidence 455677888888888763 578899999999999874432111 245666555444332 224445677899
Q ss_pred HHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy10471 93 NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYI 172 (318)
Q Consensus 93 ~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l 172 (318)
+++|.++. ...+..+...+..+. ..+..+|..++.|+..+.+..
T Consensus 468 kaLGN~g~----~~~i~~l~~~l~~~~--------------------------------~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 468 KALGNAGH----PSSIKVLEPYLEGAE--------------------------------PLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HhhhccCC----hhHHHHHHHhcCCCC--------------------------------CCCHHHHHHHHHHHHHHHHhC
Confidence 99997664 223334443333111 112344555566655444321
Q ss_pred ccccccchhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471 173 GEMGKDYIYAVTPLLEDALMD--RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 248 (318)
Q Consensus 173 g~~~~~yl~~iiP~l~~~l~~--~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i 248 (318)
. ..+-+.+..++.+ .++.+|..|..++...- .....++++...+.. |++.+|+..+...|
T Consensus 512 p-------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~------P~~~~l~~ia~~l~~---E~~~QV~sfv~S~l 573 (574)
T smart00638 512 P-------RKVQEVLLPIYLNRAEPPEVRMAAVLVLMETK------PSVALLQRIAELLNK---EPNLQVASFVYSHI 573 (574)
T ss_pred c-------hHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC------CCHHHHHHHHHHHhh---cCcHHHHHHhHHhh
Confidence 1 2333444444433 34667766666653331 223455566555433 36677777665543
No 134
>KOG1058|consensus
Probab=95.66 E-value=0.66 Score=47.69 Aligned_cols=229 Identities=16% Similarity=0.139 Sum_probs=127.3
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~ 105 (318)
-+.+++|.+...|.++|+-||+.|+.+++.|=..+..- +++-+.++...|. .++.++=+|.|.-.+-. ++|.
T Consensus 131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L--~pDapeLi~~fL~--~e~DpsCkRNAFi~L~~----~D~E 202 (948)
T KOG1058|consen 131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL--IPDAPELIESFLL--TEQDPSCKRNAFLMLFT----TDPE 202 (948)
T ss_pred HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh--cCChHHHHHHHHH--hccCchhHHHHHHHHHh----cCHH
Confidence 35678999999999999999999999999988764322 3444455543221 33445533333322211 2222
Q ss_pred HHHHHHHHh------------------h-----cccch--hhHHHHHHHH-----HHHHhhcC--------cccchH---
Q psy10471 106 DVLATLLNN------------------L-----KVQER--QNRVCTTVAI-----AIVAETCS--------PFTVLP--- 144 (318)
Q Consensus 106 ~~l~~Ll~~------------------L-----k~~~~--~~R~~~~~ai-----~~i~~~~~--------p~~vip--- 144 (318)
..+..|..+ . +.+.+ +.=.|...-+ +.++|..+ |..+-+
T Consensus 203 rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~ 282 (948)
T KOG1058|consen 203 RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAAS 282 (948)
T ss_pred HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHH
Confidence 222221111 1 11111 1111122222 12333333 221111
Q ss_pred HHHHHh-cCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH
Q psy10471 145 ALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT 223 (318)
Q Consensus 145 ~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~ 223 (318)
.+++.. +.++-+++..++--+..+-..- +.-+..++=-+++++...|..+|+-+.+..-.++..- ..++..+
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~~~~----~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr---Nvediv~ 355 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELKALH----EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR---NVEDIVQ 355 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHhhhh----HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc---cHHHHHH
Confidence 233333 3445566666666666554222 2233445555677788999999998888877776654 4677888
Q ss_pred HHHHhhhhccc---CCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhc
Q psy10471 224 HLLNYVWPNIF---ETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLF 269 (318)
Q Consensus 224 hll~~l~~~i~---d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~ 269 (318)
++-..++..-. |.+...|+..+.+|-..+.-... ....|+++.-+-
T Consensus 356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fis 406 (948)
T KOG1058|consen 356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFIS 406 (948)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhc
Confidence 87777664433 34667899999988888776653 346666666553
No 135
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.61 E-value=0.85 Score=42.32 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=74.4
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhh-------HHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSARE-------WMRICFE 75 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~-------~~~il~~ 75 (318)
-|..|++|+|-.+.... ....+-++.+...++..++.||..|++++-.+.-.-| +..+... -..+...
T Consensus 43 vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~ 118 (298)
T PF12719_consen 43 VRELALKCLGLCCLLDK----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKI 118 (298)
T ss_pred HHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHH
Confidence 47789999999988664 3444555666655555689999999999999987655 2222111 2334444
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHH--hhhCH-HHHHHHHHHhh
Q psy10471 76 LLELLKAHKKAIRRATVNTFGYIA--KAIGP-HDVLATLLNNL 115 (318)
Q Consensus 76 Ll~~L~d~~~~vR~~av~~lg~la--~~igp-~~~l~~Ll~~L 115 (318)
+.+.+.+.++.+|..|+++++.+- ..+.+ ..++..|+-..
T Consensus 119 l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~y 161 (298)
T PF12719_consen 119 LTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLY 161 (298)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 557778878889999999998843 34555 66777665544
No 136
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.42 E-value=0.029 Score=35.71 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=27.0
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIAD 58 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~ 58 (318)
..+|.++.+|++.++.+|+.|+++|+.++.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 367889999999999999999999999974
No 137
>KOG0392|consensus
Probab=95.36 E-value=0.26 Score=53.13 Aligned_cols=170 Identities=12% Similarity=0.013 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh---ch--HHHHHHHHHHHH-HHHhhhCH-HHHHHHHHHhhccc
Q psy10471 46 QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA---HK--KAIRRATVNTFG-YIAKAIGP-HDVLATLLNNLKVQ 118 (318)
Q Consensus 46 R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d---~~--~~vR~~av~~lg-~la~~igp-~~~l~~Ll~~Lk~~ 118 (318)
|+.|-.+|-.+++..|..+ ...++.+..-|+.-|++ .+ .--+....+++. .....+-| ...++.++..++..
T Consensus 750 rrgael~L~~l~~~fg~sl-~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSL-AAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVRSI 828 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHH-HHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHhcccc
Confidence 8888899999998777544 22232232333344443 12 112333333332 11112223 12466677777777
Q ss_pred chhhHHHHHHHHHHHHhhcC-c--ccchHHHHHHhcCCcchH-HHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC
Q psy10471 119 ERQNRVCTTVAIAIVAETCS-P--FTVLPALMNEYRVPELNV-QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194 (318)
Q Consensus 119 ~~~~R~~~~~ai~~i~~~~~-p--~~vip~L~~~~~d~~~~v-~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~ 194 (318)
....|++.+++|+..+.... - ..++..++-.+.+.+.-+ |.++...+..+...++....+|.+.++|.+.+.+.+.
T Consensus 829 ~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~ 908 (1549)
T KOG0392|consen 829 HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQ 908 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccc
Confidence 77899999999998775432 1 245555555556655444 4566677777777777778899999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhcCC
Q psy10471 195 DLVHRQTACATIKHMALGVYGF 216 (318)
Q Consensus 195 ~~~~R~~a~~~i~~la~~~~~~ 216 (318)
...+|..+....+.+.+.+...
T Consensus 909 ~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 909 IDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred hHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999888776533
No 138
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.29 E-value=0.13 Score=39.25 Aligned_cols=81 Identities=23% Similarity=0.319 Sum_probs=58.9
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhhhC-HH----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHH
Q psy10471 73 CFELLELLKAHKKAIRRATVNTFGYIAKAIG-PH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM 147 (318)
Q Consensus 73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~ig-p~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~ 147 (318)
+...+..++|+...+|..++..+..+.+.-. +. .++..++..|++++.=+...+++++..+++.. |..++|.|+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-PDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-hHHHHHHHH
Confidence 4455677788888899999999999887655 32 45666777778777656666677776666655 567888888
Q ss_pred HHhcCCc
Q psy10471 148 NEYRVPE 154 (318)
Q Consensus 148 ~~~~d~~ 154 (318)
..|.++.
T Consensus 84 ~~y~~~~ 90 (92)
T PF10363_consen 84 DEYADPS 90 (92)
T ss_pred HHHhCcc
Confidence 8887653
No 139
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.064 Score=53.29 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=75.5
Q ss_pred hHHHHHHhh-cCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHH
Q psy10471 29 NLVEIIEHG-LVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHD 106 (318)
Q Consensus 29 ~l~~~l~~~-l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~ 106 (318)
.++..+++. .+|.+..|||||.-+||-+|-.-.+ .+...++.|.+ .++.||...-.++|..++..|...
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 455666665 7899999999999999988754333 22233455566 789999999999999998899876
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc
Q psy10471 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP 139 (318)
Q Consensus 107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p 139 (318)
.++.|-...++..-=+|....+|.++|--.|.|
T Consensus 622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 655555555555556888899999888766664
No 140
>KOG1020|consensus
Probab=95.16 E-value=0.67 Score=50.95 Aligned_cols=143 Identities=12% Similarity=0.174 Sum_probs=89.9
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
+..-.+..+..|+-.+..+.+.+|.-|+++|+++++.-+....-++ +-..+-..+.|+..+||.+|++-+|...-.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~d---vq~~Vh~R~~DssasVREAaldLvGrfvl~- 885 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPD---VQEAVHGRLNDSSASVREAALDLVGRFVLS- 885 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHH---HHHHHHHhhccchhHHHHHHHHHHhhhhhc-
Confidence 3334455666677777777799999999999999997664432233 333344777889999999999999975532
Q ss_pred CHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchH----HHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471 103 GPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP----ALMNEYRVPELNVQNGVLKALSFLF 169 (318)
Q Consensus 103 gp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip----~L~~~~~d~~~~v~~~vl~al~~i~ 169 (318)
.|. +.-..+.+...|..-.+|.=+..-+--+++...-|..+| -++..-.|+|.+++.-+++.+..++
T Consensus 886 ~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 886 IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 222 223334444444433455544443333444333343333 3555667888888888888888765
No 141
>KOG1061|consensus
Probab=95.14 E-value=0.83 Score=46.98 Aligned_cols=157 Identities=17% Similarity=0.067 Sum_probs=98.5
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHh-hhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCcccchHHHHHHhc
Q psy10471 77 LELLKAHKKAIRRATVNTFGYIAK-AIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSPFTVLPALMNEYR 151 (318)
Q Consensus 77 l~~L~d~~~~vR~~av~~lg~la~-~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p~~vip~L~~~~~ 151 (318)
+...+|+++-+|..|+++.|.+.- .+.. .+...+.+.+++.+--+|..++...+... +.|.+..+++.|-+.+.
T Consensus 92 ~kD~~d~np~iR~lAlrtm~~l~v~~i~e-y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 92 LKDCEDPNPLIRALALRTMGCLRVDKITE-YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS 170 (734)
T ss_pred hccCCCCCHHHHHHHhhceeeEeehHHHH-HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc
Confidence 334444788899999999987542 1112 35677888888777667777777666543 55667789999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh
Q psy10471 152 VPELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVW 230 (318)
Q Consensus 152 d~~~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~ 230 (318)
|+++.|-..++.++..|.+.-.+ ......++++-.+...++.++..-+-... ..++...... +.....+..++.
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL---~~l~~y~p~d--~~ea~~i~~r~~ 245 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFIL---DCLAEYVPKD--SREAEDICERLT 245 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHH---HHHHhcCCCC--chhHHHHHHHhh
Confidence 99999999999999999987532 22222355666666666666554443332 2333333211 122334555555
Q ss_pred hcccCCChH
Q psy10471 231 PNIFETSPH 239 (318)
Q Consensus 231 ~~i~d~~~~ 239 (318)
|.++..++.
T Consensus 246 p~Lqh~n~a 254 (734)
T KOG1061|consen 246 PRLQHANSA 254 (734)
T ss_pred hhhccCCcc
Confidence 555555443
No 142
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.13 E-value=3.7 Score=40.37 Aligned_cols=240 Identities=11% Similarity=0.169 Sum_probs=128.3
Q ss_pred cCcCCChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-----chHHHHHHH
Q psy10471 21 CAILPHLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-----HKKAIRRAT 91 (318)
Q Consensus 21 ~~~~P~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-----~~~~vR~~a 91 (318)
.++.|++++++.-+...++- +|+.+-++..+.+..+-+...++ ...++..|.++++. .++.-=+-.
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~-----~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPI-----AVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGG-----HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 36899999999998776643 35666666666666555544443 33344444444433 344444557
Q ss_pred HHHHHHHHhhhC---HH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC--c----c-cchHHHHHHhcCC-
Q psy10471 92 VNTFGYIAKAIG---PH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--P----F-TVLPALMNEYRVP- 153 (318)
Q Consensus 92 v~~lg~la~~ig---p~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~--p----~-~vip~L~~~~~d~- 153 (318)
.+++|.+.+... |. .+++.+...|..+-...---+-+-++.+-+... + | .++|.|+.----.
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~ 172 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER 172 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc
Confidence 777777766533 32 234444445542111111112222233323322 1 2 6667666532211
Q ss_pred cchHHHHHHHHHHHHHHHHcccc--ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471 154 ELNVQNGVLKALSFLFEYIGEMG--KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP 231 (318)
Q Consensus 154 ~~~v~~~vl~al~~i~~~lg~~~--~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~ 231 (318)
..++ .+++..+..+++--+..+ .+++..++-.+.+++..+... ..+..+++.+...+.....+..+.++...++.
T Consensus 173 ~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 173 RGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLT 249 (435)
T ss_dssp TTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred CCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 1233 556666666665544433 367888999999999765422 33567888888887644445555565555544
Q ss_pred cccC-CChHHHHHHHHHHHHHHHHcChhhH---HHhHHHHh
Q psy10471 232 NIFE-TSPHLVQAFMDAVEGLRVALGPVRI---LQYVLQGL 268 (318)
Q Consensus 232 ~i~d-~~~~vr~~ii~~i~~i~~alG~~~~---~~~vl~~l 268 (318)
-+.. ..+...+..+--++-++...|++.+ ...+.||+
T Consensus 250 RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~gl 290 (435)
T PF03378_consen 250 RLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGL 290 (435)
T ss_dssp HHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTH
T ss_pred HHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCc
Confidence 4432 4566777777778888888888763 33444555
No 143
>KOG2160|consensus
Probab=94.94 E-value=0.86 Score=42.94 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHHhccC-cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHhh
Q psy10471 4 DKNLGIKIVQQIAILMGCA-ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELLK 81 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L~ 81 (318)
+|+-++.-|.+++.-+..+ ..=.+..+.+++. .+++.++.+|+.|++.||.++++.+.... .-+.- -+..|+.+++
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~-~L~~Ll~~ls 176 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG-ALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-cHHHHHHHHc
Confidence 5666666666666655442 3444556666666 99999999999999999999998874221 11111 2334566666
Q ss_pred h-chHHHHHHHHHHHHHHHhhhCH
Q psy10471 82 A-HKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 82 d-~~~~vR~~av~~lg~la~~igp 104 (318)
. +...+|..|+-+++.+...--|
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcH
Confidence 6 4556888888888877765544
No 144
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.83 E-value=2 Score=44.78 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhcC----------cccchHHHHHHhcCC--cchHHHHHHHHHHHHHHHHccccccchh--hhHHHHHHH
Q psy10471 125 CTTVAIAIVAETCS----------PFTVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYIY--AVTPLLEDA 190 (318)
Q Consensus 125 ~~~~ai~~i~~~~~----------p~~vip~L~~~~~d~--~~~v~~~vl~al~~i~~~lg~~~~~yl~--~iiP~l~~~ 190 (318)
..+.++|+++.--. .+.++|-+.+.+... +.++...++..++.++ ....|...+- .+++.+..+
T Consensus 507 ~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla--~d~~~A~lL~~sgli~~Li~L 584 (708)
T PF05804_consen 507 FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA--SDPECAPLLAKSGLIPTLIEL 584 (708)
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH--CCHHHHHHHHhCChHHHHHHH
Confidence 45666676663221 257899999988654 2334444444444433 3556777773 689999999
Q ss_pred HhcC--C-HHHHHHHHHHHHHHhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHH
Q psy10471 191 LMDR--D-LVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVL 265 (318)
Q Consensus 191 l~~~--~-~~~R~~a~~~i~~la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl 265 (318)
++.. | ..+-|.+. +...+... ....+..+ .++..|+++.+.|.|+++|+..=.++.-|+..=.
T Consensus 585 L~~kqeDdE~VlQil~-~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~--------- 652 (708)
T PF05804_consen 585 LNAKQEDDEIVLQILY-VFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE--------- 652 (708)
T ss_pred HHhhCchHHHHHHHHH-HHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH---------
Confidence 9643 2 23333222 22222111 01111111 2356677888889999999987777776654321
Q ss_pred HHhccccccchHHHHHHHHHhhc
Q psy10471 266 QGLFHPARKVRDVYWKIYNSLYI 288 (318)
Q Consensus 266 ~~l~~~a~~~r~~~w~i~~~~~~ 288 (318)
.-++|+|....+.+|+-+.
T Consensus 653 ----~w~~ri~~~kF~~hN~~WL 671 (708)
T PF05804_consen 653 ----EWAERIRREKFRWHNAQWL 671 (708)
T ss_pred ----HHHHHhhHHHHHHHHHHHH
Confidence 1144666666666766653
No 145
>KOG0567|consensus
Probab=94.58 E-value=0.33 Score=44.02 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=69.2
Q ss_pred HHHHhhcCCCC-HHH-HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471 32 EIIEHGLVDEQ-QKV-QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA 109 (318)
Q Consensus 32 ~~l~~~l~d~~-~~v-R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~ 109 (318)
.-+-..+.|.+ |.+ |+.|.=.|.++. ++. -+..+.+-+.+++.-.|+++--.|||+... ..++
T Consensus 157 ~~lr~~lld~t~~l~~Ry~amF~LRn~g---~Ee--------aI~al~~~l~~~SalfrhEvAfVfGQl~s~----~ai~ 221 (289)
T KOG0567|consen 157 HELRAELLDETKPLFERYRAMFYLRNIG---TEE--------AINALIDGLADDSALFRHEVAFVFGQLQSP----AAIP 221 (289)
T ss_pred HHHHHHHHhcchhHHHHHhhhhHhhccC---cHH--------HHHHHHHhcccchHHHHHHHHHHHhhccch----hhhH
Confidence 33444445543 555 666655554432 111 122244556666666888888888887652 3567
Q ss_pred HHHHhhcccch--hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHH
Q psy10471 110 TLLNNLKVQER--QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALS 166 (318)
Q Consensus 110 ~Ll~~Lk~~~~--~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~ 166 (318)
.|.+.|.+... -+|...+.|+|.|++. ..++.|-.-..|+++-++.+..-+++
T Consensus 222 ~L~k~L~d~~E~pMVRhEaAeALGaIa~e----~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 222 SLIKVLLDETEHPMVRHEAAEALGAIADE----DCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHhhcCH----HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77777776555 4788888888887743 22444555557877777766555554
No 146
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.56 E-value=2.5 Score=42.68 Aligned_cols=225 Identities=12% Similarity=0.165 Sum_probs=117.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--HHHHHH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DVLATL 111 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--~~l~~L 111 (318)
|+...+ .++.+.+-|+.-|+.+....++. -..-+..++++..|....||..|++.+-.+++....+ .+.+.|
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l-----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL 101 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDL-----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVL 101 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGG-----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHH
Confidence 444555 36888888888888887754432 2234455667778988899999999999999865433 577788
Q ss_pred HHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc---CCcchHHHHHHHHHHHHHHHHccccccch-------h
Q psy10471 112 LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR---VPELNVQNGVLKALSFLFEYIGEMGKDYI-------Y 181 (318)
Q Consensus 112 l~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~---d~~~~v~~~vl~al~~i~~~lg~~~~~yl-------~ 181 (318)
...|..++...+.+|-.+++.+... .|-..+.++.+... ..+..++.-+++-|..-...++ ..++ .
T Consensus 102 ~QlL~tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~---~~~~~p~~E~e~ 177 (556)
T PF05918_consen 102 VQLLQTDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK---PELLTPQKEMEE 177 (556)
T ss_dssp HHHTT---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS----TTTS---HHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc---HHHhhchHHHHH
Confidence 8888877777777777777654322 12233333444333 3345567766665543333333 2233 2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh-----hcccC-CChHHHHHHHHHHHHHHHHc
Q psy10471 182 AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVW-----PNIFE-TSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~-----~~i~d-~~~~vr~~ii~~i~~i~~al 255 (318)
.|+-.+..++.|-...-.......+..+-..-. ..-.+-.+.+.+.+. +.-|+ .+++....++.++.....-.
T Consensus 178 ~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~-~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~f 256 (556)
T PF05918_consen 178 FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGG-KQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFF 256 (556)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhCccccc-cCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHh
Confidence 366677788877677777777777766633110 111222233444443 22233 23555555666555532222
Q ss_pred ----ChhhHHHhHHHHhc
Q psy10471 256 ----GPVRILQYVLQGLF 269 (318)
Q Consensus 256 ----G~~~~~~~vl~~l~ 269 (318)
....|..|+..-++
T Consensus 257 s~~v~Sskfv~y~~~kvl 274 (556)
T PF05918_consen 257 SRGVSSSKFVNYMCEKVL 274 (556)
T ss_dssp BTTB--HHHHHHHHHHTC
T ss_pred cCCCChHHHHHHHHHHhc
Confidence 22345566655553
No 147
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.43 E-value=3 Score=42.64 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC----------H------HHHHHHHHHhhc----ccchhhHHH
Q psy10471 67 REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG----------P------HDVLATLLNNLK----VQERQNRVC 125 (318)
Q Consensus 67 ~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig----------p------~~~l~~Ll~~Lk----~~~~~~R~~ 125 (318)
++++..+..|++.-.. +++.+|..|+-++|.+....- | .++++.+.+.|+ .+++..+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 4444444433322122 455688999999988766421 1 134445555554 223355666
Q ss_pred HHHHHHHHHhhcCcccchHHHHHHhcCC---cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC--CHHHHH
Q psy10471 126 TTVAIAIVAETCSPFTVLPALMNEYRVP---ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQ 200 (318)
Q Consensus 126 ~~~ai~~i~~~~~p~~vip~L~~~~~d~---~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~--~~~~R~ 200 (318)
...|+|.++. | .++|.+.....+. +..+|..+++|+..+.+ .+-..+.+.+..++.+. +..+|-
T Consensus 510 ~LkaLgN~g~---~-~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~-------~~~~~v~~~l~~I~~n~~e~~EvRi 578 (618)
T PF01347_consen 510 YLKALGNLGH---P-ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK-------HCPEKVREILLPIFMNTTEDPEVRI 578 (618)
T ss_dssp HHHHHHHHT----G-GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG-------T-HHHHHHHHHHHHH-TTS-HHHHH
T ss_pred HHHHhhccCC---c-hhhHHHHhHhhhccccchHHHHHHHHHHHHHhh-------cCcHHHHHHHHHHhcCCCCChhHHH
Confidence 6777776543 2 5777777777665 45667778777764422 12235667777777544 478998
Q ss_pred HHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHH
Q psy10471 201 TACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVE 249 (318)
Q Consensus 201 ~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~ 249 (318)
.|..++-..- .....++++..+++ .|++++|+..+...|+
T Consensus 579 aA~~~lm~~~------P~~~~l~~i~~~l~---~E~~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 579 AAYLILMRCN------PSPSVLQRIAQSLW---NEPSNQVASFVYSHLK 618 (618)
T ss_dssp HHHHHHHHT---------HHHHHHHHHHHT---T-S-HHHHHHHHHHHH
T ss_pred HHHHHHHhcC------CCHHHHHHHHHHHh---hCchHHHHHHHHHhcC
Confidence 8888774432 23356677766653 3588899988877663
No 148
>KOG0414|consensus
Probab=94.25 E-value=0.71 Score=49.61 Aligned_cols=121 Identities=10% Similarity=0.214 Sum_probs=79.4
Q ss_pred HhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh-h-CH
Q psy10471 28 KNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA-I-GP 104 (318)
Q Consensus 28 ~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~-i-gp 104 (318)
..=+|.+...+. .++|.+|.++.-++|.+|=..+..+ +.|-+-+. ..|.|.+..||+.|+-++..+.-+ + --
T Consensus 959 es~l~llftimeksp~p~IRsN~VvalgDlav~fpnli--e~~T~~Ly---~rL~D~~~~vRkta~lvlshLILndmiKV 1033 (1251)
T KOG0414|consen 959 ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI--EPWTEHLY---RRLRDESPSVRKTALLVLSHLILNDMIKV 1033 (1251)
T ss_pred HHHHHHHHHHHhcCCCceeeecchheccchhhhccccc--chhhHHHH---HHhcCccHHHHHHHHHHHHHHHHhhhhHh
Confidence 344555655554 6889999999999999998877764 56777655 888999999999999998775421 1 00
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-ccchHHHHHHhcCC
Q psy10471 105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVP 153 (318)
Q Consensus 105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-~~vip~L~~~~~d~ 153 (318)
.-.+......|-|++.+.|-++=.-+..++.+..+ |.++|-++..+.|+
T Consensus 1034 KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1034 KGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHHHhhccC
Confidence 00133344455556555554444333445555554 57777777777665
No 149
>KOG2025|consensus
Probab=94.22 E-value=2 Score=44.14 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=63.6
Q ss_pred CchhhhHHHHHHHHHHHhcc-CcCCC--hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHH
Q psy10471 2 SSDKNLGIKIVQQIAILMGC-AILPH--LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE-YVSAREWMRICFELL 77 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~-~~~P~--l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~-~i~~~~~~~il~~Ll 77 (318)
|.+|..=-+++.-||.++|+ .-.|- -+.|...+..-+.|..|.||..|+.+|.++-+..++ .. |+...+.
T Consensus 96 skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~ 169 (892)
T KOG2025|consen 96 SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC------PVVNLLK 169 (892)
T ss_pred CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc------cHHHHHH
Confidence 45566666788889998886 23332 246777788889999999999999999999864442 22 2333333
Q ss_pred HHh-hhchHHHHHHHHHHHHH
Q psy10471 78 ELL-KAHKKAIRRATVNTFGY 97 (318)
Q Consensus 78 ~~L-~d~~~~vR~~av~~lg~ 97 (318)
.++ +|+++.|||+|+..+..
T Consensus 170 ~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 170 DLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHhcCCcHHHHHHHHHhhcc
Confidence 333 55899999999988754
No 150
>KOG2062|consensus
Probab=94.13 E-value=2.7 Score=43.36 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=54.1
Q ss_pred cchHHHHHH-hcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCc
Q psy10471 141 TVLPALMNE-YRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGC 218 (318)
Q Consensus 141 ~vip~L~~~-~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~ 218 (318)
.++..|+.. ..|.+..|+++++-++.+++-. + |..+|.....+. +-+++||-.++-+++.- |.+.|.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~------d--p~~~~s~V~lLses~N~HVRyGaA~ALGIa---CAGtG~ 622 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------D--PEQLPSTVSLLSESYNPHVRYGAAMALGIA---CAGTGL 622 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEec------C--hhhchHHHHHHhhhcChhhhhhHHHHHhhh---hcCCCc
Confidence 555556555 4667777777777766665421 0 344455555554 34577777777666433 333344
Q ss_pred hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471 219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR 252 (318)
Q Consensus 219 ~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~ 252 (318)
.+.+.- +-|...|+..-|||.++-++.-|-
T Consensus 623 ~eAi~l----Lepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 623 KEAINL----LEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HHHHHH----HhhhhcChHHHHHHHHHHHHHHHH
Confidence 443322 234455666777776666655553
No 151
>KOG2137|consensus
Probab=93.83 E-value=6 Score=40.68 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=111.0
Q ss_pred hchHHHHHHHHHHHHHHHhhhCHHHHHHH----HHHhhcccchhhHHHHHHHHHHHHhhcC-cc---cchHHHHHHh-cC
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGPHDVLAT----LLNNLKVQERQNRVCTTVAIAIVAETCS-PF---TVLPALMNEY-RV 152 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp~~~l~~----Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-p~---~vip~L~~~~-~d 152 (318)
.....++..-++..-.|.+++.+.++.+. |...+++.+.+..-.+.+.+..+++... ++ .++|.+.+.. +.
T Consensus 361 ~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~t 440 (700)
T KOG2137|consen 361 SDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKT 440 (700)
T ss_pred CCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcc
Confidence 35666888888888888888888755444 4445556665555566666666665443 33 7899998865 56
Q ss_pred CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhc
Q psy10471 153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPN 232 (318)
Q Consensus 153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~ 232 (318)
....++..++-|+..+.+.+.. ..-++++ +.+....+.+++.+.-....+...++.+.. .|.+-...|.+|++|+.
T Consensus 441 t~~~vkvn~L~c~~~l~q~lD~--~~v~d~~-lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g~ev~~~~VlPlli~l 516 (700)
T KOG2137|consen 441 TNLYVKVNVLPCLAGLIQRLDK--AAVLDEL-LPILKCIKTRDPAIVMGFLRIYEALALIIY-SGVEVMAENVLPLLIPL 516 (700)
T ss_pred cchHHHHHHHHHHHHHHHHHHH--HHhHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cceeeehhhhhhhhhhh
Confidence 6778888888888888877763 1122444 445556667777777666777767666553 23455667789998887
Q ss_pred ccCCChHHHH--HHHHHHHHHHHHcCh
Q psy10471 233 IFETSPHLVQ--AFMDAVEGLRVALGP 257 (318)
Q Consensus 233 i~d~~~~vr~--~ii~~i~~i~~alG~ 257 (318)
-..+.-...+ ..+..+..+..++..
T Consensus 517 s~~~~L~~~Qy~~~m~~i~~ml~~ie~ 543 (700)
T KOG2137|consen 517 SVAPSLNGEQYNKYMSEIRLMLSAIEK 543 (700)
T ss_pred hhcccccHHHHHHHHHHHHHHHhhhhH
Confidence 6554433333 245555555555543
No 152
>KOG1020|consensus
Probab=93.64 E-value=1.3 Score=48.98 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHH
Q psy10471 67 REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL 146 (318)
Q Consensus 67 ~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L 146 (318)
..+.+.+..++..|..+...+|--|++++..+.+ .+|..+... .++ -+.
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive-~Dp~vL~~~-----dvq-------------------------~~V 860 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVE-ADPSVLSRP-----DVQ-------------------------EAV 860 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-cChHhhcCH-----HHH-------------------------HHH
Confidence 4455666666777788888999999999999986 777533111 000 013
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471 147 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL 211 (318)
Q Consensus 147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~ 211 (318)
...+.|...+||.+++..++.+.-+...-..+|+.+| ..-+.|....||+.++..+..+..
T Consensus 861 h~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i----~erIlDtgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 861 HGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQI----IERILDTGVSVRKRVIKILRDICE 921 (1692)
T ss_pred HHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHHH
Confidence 3445566666777777766655544333233333333 222335566667666666655544
No 153
>KOG4413|consensus
Probab=93.58 E-value=0.22 Score=46.52 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH----HHHHhhhhccc
Q psy10471 159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT----HLLNYVWPNIF 234 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~----hll~~l~~~i~ 234 (318)
+-.+.++...|++..+ ....++++|.++.=+.+.|.+++..++..++++.+.+..-...+... .+++.++.+|.
T Consensus 61 tlcVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred hhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 4478888999987543 44558899999999999999999999999999988774212222221 37778888999
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q psy10471 235 ETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 235 d~~~~vr~~ii~~i~~i~~a 254 (318)
.++.+|-+++++++.+++..
T Consensus 139 geddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred CCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999998753
No 154
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.48 E-value=0.091 Score=33.91 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10471 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLV 53 (318)
Q Consensus 10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~L 53 (318)
|+|+++.......+ .-+.+...+...+.|++|.||++|+.+|
T Consensus 1 k~l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 1 KALSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred ChHHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35666666332211 1247888899999999999999998764
No 155
>KOG1077|consensus
Probab=93.39 E-value=11 Score=38.97 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=76.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATL 111 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~L 111 (318)
+-..+.+..+..|.-|+.++-.+|++.. .++ .+.+...++ ..|+. ...++|+-|++-+...++.-...++...|
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h~d~Ii---~sLkterDvSirrravDLLY~mcD~~Nak~IV~el 409 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKHQDTII---NSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAEL 409 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHHHHHHH---HHhccccchHHHHHHHHHHHHHhchhhHHHHHHHH
Confidence 4455666667777777777777776632 222 344444444 66684 67899999999999988766667788889
Q ss_pred HHhhcccchhhHHHHHHHHHHHHhhcCc
Q psy10471 112 LNNLKVQERQNRVCTTVAIAIVAETCSP 139 (318)
Q Consensus 112 l~~Lk~~~~~~R~~~~~ai~~i~~~~~p 139 (318)
+..|...+.+.|-..+.-+++++|++.+
T Consensus 410 LqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 410 LQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 9999888889999999999999999876
No 156
>KOG1293|consensus
Probab=93.35 E-value=4.4 Score=41.22 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE 219 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~ 219 (318)
.++..+.+.+.||+..++..++.++.+++--.|+-=..|+ ...+-.+...+.+.+.+.|+.+.+++.++.=+++...+.
T Consensus 419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~ 498 (678)
T KOG1293|consen 419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKF 498 (678)
T ss_pred hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHH
Confidence 7888899999999999999999999988766554223355 457788888889999999999999999997666422222
Q ss_pred hHHHH-HHHhhhhcccCCChHHHHHHHHHH
Q psy10471 220 DALTH-LLNYVWPNIFETSPHLVQAFMDAV 248 (318)
Q Consensus 220 ~~i~h-ll~~l~~~i~d~~~~vr~~ii~~i 248 (318)
....+ ..+.+...+.|++..|+....+.+
T Consensus 499 ~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 499 QLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred HHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 22222 223334555667777777655444
No 157
>KOG4524|consensus
Probab=93.13 E-value=8.3 Score=41.01 Aligned_cols=86 Identities=21% Similarity=0.199 Sum_probs=61.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc----CCChHHHHHHHHHHHHHHHHcCh
Q psy10471 182 AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF----ETSPHLVQAFMDAVEGLRVALGP 257 (318)
Q Consensus 182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~----d~~~~vr~~ii~~i~~i~~alG~ 257 (318)
+|+-.-++++.+.+...|-.+.+++..-...++ .+++.+-.+.+-.||.+- +.++-+-..++.+++.++..=|+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La--~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLA--TYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHh--ccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 455666667778888888888888765555553 455655555555666654 46777888899999999999886
Q ss_pred ---hhHHHhHHHHhc
Q psy10471 258 ---VRILQYVLQGLF 269 (318)
Q Consensus 258 ---~~~~~~vl~~l~ 269 (318)
..+..-+||-+-
T Consensus 881 Fv~sR~l~dvlP~l~ 895 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLK 895 (1014)
T ss_pred HHHHHHHHHHHHHHH
Confidence 557777777763
No 158
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.07 E-value=2.2 Score=40.56 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=51.5
Q ss_pred HHHHHHHHHHH----ccccccchhhhHHHHHHHHhcC----------CHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471 162 LKALSFLFEYI----GEMGKDYIYAVTPLLEDALMDR----------DLVHRQTACATIKHMALGVYGFGCEDALTHLLN 227 (318)
Q Consensus 162 l~al~~i~~~l----g~~~~~yl~~iiP~l~~~l~~~----------~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~ 227 (318)
+..++.+..++ .....+|+++++|.+..++..+ .-.+|..++..++.++...... +.....++..
T Consensus 234 L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-y~~l~~ri~~ 312 (343)
T cd08050 234 LIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-YNTLQPRITR 312 (343)
T ss_pred HHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHH
Confidence 34444444443 3357899999999999998322 2488999999999888776422 2233334443
Q ss_pred hhhhcccCCChHHHHHHHHHHHHH
Q psy10471 228 YVWPNIFETSPHLVQAFMDAVEGL 251 (318)
Q Consensus 228 ~l~~~i~d~~~~vr~~ii~~i~~i 251 (318)
.+...+.|+...+ .+.-+++..+
T Consensus 313 tl~k~l~d~~~~~-~~~YGAi~GL 335 (343)
T cd08050 313 TLLKALLDPKKPL-TTHYGAIVGL 335 (343)
T ss_pred HHHHHHcCCCCCc-chhhHHHHHH
Confidence 4344444443332 2244455444
No 159
>KOG0413|consensus
Probab=92.62 E-value=0.46 Score=50.09 Aligned_cols=131 Identities=10% Similarity=0.108 Sum_probs=92.6
Q ss_pred HHHhhcCc-----ccchHHHHHHhcCCc-chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHH
Q psy10471 132 IVAETCSP-----FTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT 205 (318)
Q Consensus 132 ~i~~~~~p-----~~vip~L~~~~~d~~-~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~ 205 (318)
+++..|-. -..||.|.+++.-++ ..+++.++=+++.+|-....+. ..-+|.+-..+.|+++.+|++...+
T Consensus 954 TlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~----d~YiP~I~~~L~Dp~~iVRrqt~il 1029 (1529)
T KOG0413|consen 954 TLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT----DRYIPMIAASLCDPSVIVRRQTIIL 1029 (1529)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH----HHhhHHHHHHhcCchHHHHHHHHHH
Confidence 45556653 258999999997765 4667766666666655433333 4455888899999999999999999
Q ss_pred HHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc
Q psy10471 206 IKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH 270 (318)
Q Consensus 206 i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~ 270 (318)
++.|.+.--..-.-+.+. +++-.+.|.++++|.-.=-.+..+-..=.|-+|-+++..-++|
T Consensus 1030 L~rLLq~~~vKw~G~Lf~----Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1030 LARLLQFGIVKWNGELFI----RFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred HHHHHhhhhhhcchhhHH----HHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH
Confidence 988865421001123333 3356677899999999888999988888888888888777754
No 160
>KOG1822|consensus
Probab=92.52 E-value=24 Score=40.49 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=79.0
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHH-HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKV-QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~v-R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
-|+.+.++++++|.+.| -.|++..+.+.+...+++..+-+ |..-..++|-+=...|-+++-..+..=+..++..-+|
T Consensus 892 ~rc~~~ea~arLaq~v~--~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~D 969 (2067)
T KOG1822|consen 892 LRCAAAEALARLAQVVG--SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATD 969 (2067)
T ss_pred HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhc
Confidence 46788999999999877 57889999999999999966555 6666888998887666666545555545556677788
Q ss_pred c-hHHHHHHHHHHHHHHHhhhCHH
Q psy10471 83 H-KKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 83 ~-~~~vR~~av~~lg~la~~igp~ 105 (318)
+ .+.|++.+++++..+.+..||.
T Consensus 970 s~~p~VqtwSL~al~~i~~s~~p~ 993 (2067)
T KOG1822|consen 970 STSPVVQTWSLHALALILDSSGPM 993 (2067)
T ss_pred CCCchhhhhHHHHHHHHHcCCCce
Confidence 5 4589999999999999999984
No 161
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.52 E-value=4.7 Score=33.98 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHH
Q psy10471 68 EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM 147 (318)
Q Consensus 68 ~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~ 147 (318)
++......+.+.|++++..-|.+++.-++...+..|+..+...-- .-+..++
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~----------------------------~W~~~Ll 73 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGS----------------------------QWLRALL 73 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHH----------------------------HHHHHHH
Confidence 444445556677788888889999999988888666653322211 1122255
Q ss_pred HHhcCCc-chHHHHHHHHHHHHHHHHccc-------cccchhhhHHHHHHHHhc
Q psy10471 148 NEYRVPE-LNVQNGVLKALSFLFEYIGEM-------GKDYIYAVTPLLEDALMD 193 (318)
Q Consensus 148 ~~~~d~~-~~v~~~vl~al~~i~~~lg~~-------~~~yl~~iiP~l~~~l~~ 193 (318)
+.++.++ ..+.+.++.++..+|..+++. ..|.++.+++.+.+.+.+
T Consensus 74 ~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~ 127 (165)
T PF08167_consen 74 SILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD 127 (165)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc
Confidence 5554443 355677888888888776542 456666666666666654
No 162
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.47 E-value=0.67 Score=44.04 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=55.1
Q ss_pred CcCCChHhHHHHHHhhc----------CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH--HHHH
Q psy10471 22 AILPHLKNLVEIIEHGL----------VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK--AIRR 89 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~l----------~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~--~vR~ 89 (318)
.+.||+.+|+|.++..+ .+.|+..|.-|+..+++++...+..- ..--.++...+.+.+.|+.. ...-
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 59999999999987554 34578999999999999998766432 23344566667777777433 3466
Q ss_pred HHHHHHHHHH
Q psy10471 90 ATVNTFGYIA 99 (318)
Q Consensus 90 ~av~~lg~la 99 (318)
=|+.+++.++
T Consensus 330 GAi~GL~~lG 339 (343)
T cd08050 330 GAIVGLSALG 339 (343)
T ss_pred HHHHHHHHhC
Confidence 6777776654
No 163
>KOG2274|consensus
Probab=92.46 E-value=9.1 Score=40.48 Aligned_cols=208 Identities=13% Similarity=0.110 Sum_probs=121.1
Q ss_pred hHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH
Q psy10471 27 LKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 27 l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp 104 (318)
+..+...+...+.- ..|-----+.++++..+++.... +.-..-++...++.+.- ..+.+|..|+++|...+ ++
T Consensus 447 l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~ 521 (1005)
T KOG2274|consen 447 LIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KV 521 (1005)
T ss_pred HHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---Cc
Confidence 33344334343333 34555447788888777764431 22222233333333333 45557777787776554 33
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhh
Q psy10471 105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAV 183 (318)
Q Consensus 105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~i 183 (318)
..+.+.+= .++..+++..-+.+.++-..+.++++++++. +.++..-. ..|
T Consensus 522 ~vl~~~~p----------------------------~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI 572 (1005)
T KOG2274|consen 522 KVLLSLQP----------------------------MILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKI 572 (1005)
T ss_pred eeccccch----------------------------HHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Chhhhhhhhcch
Confidence 32221111 2333466666666677888888888888874 54444333 468
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHHhhhhcCCCc--hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh--
Q psy10471 184 TPLLEDALM--DRDLVHRQTACATIKHMALGVYGFGC--EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-- 257 (318)
Q Consensus 184 iP~l~~~l~--~~~~~~R~~a~~~i~~la~~~~~~~~--~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~-- 257 (318)
.|.+.+++. ..||.+-..+-+.+..+..+...-|. +..+..+.+.+-.+--.-.+.+...+++-+..+.+.-.+
T Consensus 573 ~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 573 CPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 899888884 55678888888888888876643342 334444444432221112366777888888888877765
Q ss_pred -hhHHHhHHHHh
Q psy10471 258 -VRILQYVLQGL 268 (318)
Q Consensus 258 -~~~~~~vl~~l 268 (318)
+.+..|++|.+
T Consensus 653 ~~~l~~~~FpaV 664 (1005)
T KOG2274|consen 653 PNLLICYAFPAV 664 (1005)
T ss_pred cHHHHHHHhHHh
Confidence 45778888887
No 164
>KOG1525|consensus
Probab=92.16 E-value=3.1 Score=45.92 Aligned_cols=168 Identities=16% Similarity=0.217 Sum_probs=103.3
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--- 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--- 105 (318)
.+.|.+..-|..++..+|..|.+.+|++-..-+.... +.+.+++..-+..+.|....||.++++..-+.-.. .|.
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-Cchhhh
Confidence 4455555555667899999999999998875544332 67888888888899999999999999998654432 333
Q ss_pred HHHHHHHHhhcccch--hhHHHHHH---HHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH---H---cc
Q psy10471 106 DVLATLLNNLKVQER--QNRVCTTV---AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY---I---GE 174 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~~~--~~R~~~~~---ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~---l---g~ 174 (318)
.....+.--.++-+. ++|+-++. +++.......|- ++-..-..+||--..||..+.+.++++.+. + |.
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~ 415 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGG 415 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 111111111122333 33333221 122333444333 555555677888899999999999999883 2 21
Q ss_pred -ccccchhhhHHHHHHHHhcCCHHHH
Q psy10471 175 -MGKDYIYAVTPLLEDALMDRDLVHR 199 (318)
Q Consensus 175 -~~~~yl~~iiP~l~~~l~~~~~~~R 199 (318)
...+-+..|.--+.+++-..+...|
T Consensus 416 k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 416 KEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred ccccccccccchhHHhhHhhccccHH
Confidence 1222234455566677666666666
No 165
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.10 E-value=8.5 Score=34.40 Aligned_cols=199 Identities=14% Similarity=0.078 Sum_probs=108.0
Q ss_pred HHHHHh-hcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-HHHH
Q psy10471 31 VEIIEH-GLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-HDVL 108 (318)
Q Consensus 31 ~~~l~~-~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-~~~l 108 (318)
+|.++- .-+..+|......+++|+.+|.... . ...+++..+..+.+.+....+..+++-+..+-+.-+- +..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~----~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L 76 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-V----CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFL 76 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-c----chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHH
Confidence 455544 4455789999999999999998652 1 1223444343444555555666677776666653221 1233
Q ss_pred HHHHHh--hc------ccchhhHHHHH--HHHHHHHhhcC--cccchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccc
Q psy10471 109 ATLLNN--LK------VQERQNRVCTT--VAIAIVAETCS--PFTVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEM 175 (318)
Q Consensus 109 ~~Ll~~--Lk------~~~~~~R~~~~--~ai~~i~~~~~--p~~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~ 175 (318)
..++.. ++ ..+...+..++ .++..++..-. -..+++.+...+ ++.+...+...++++..++++--..
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd 156 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD 156 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc
Confidence 333333 11 11222222232 23333332211 137888888888 6777788899999999999753333
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHhhhhcccCCC
Q psy10471 176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNYVWPNIFETS 237 (318)
Q Consensus 176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~l~~~i~d~~ 237 (318)
+.....-+.|.+ =.+..+.+-+..+..+.-+..+.... .++....+++..+|......+
T Consensus 157 ~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 157 FYSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 333333344433 11333555454555554433332211 134566778888888876554
No 166
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.01 E-value=2 Score=41.29 Aligned_cols=126 Identities=10% Similarity=0.217 Sum_probs=77.4
Q ss_pred CchhhhHHHHHHHHHHHhccCcCCChHhHHHHHHh-hcCC--CCHHHHHHHHHHHHHHHhhCC----------CCCCh-h
Q psy10471 2 SSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEH-GLVD--EQQKVQENCIDLVGRIADRGP----------EYVSA-R 67 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~-~l~d--~~~~vR~aa~~~LG~la~~~~----------~~i~~-~ 67 (318)
.+-|.+|...+-.|+.--+..+.+-+...+..++. .-.| .+++.+.+|+..+|-+|..+. +.++. .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 35688899999999886555444444333333321 1123 468999999999999997552 12222 2
Q ss_pred hHHHHHHHHHHHhh-h--chHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHH
Q psy10471 68 EWMRICFELLELLK-A--HKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAI 130 (318)
Q Consensus 68 ~~~~il~~Ll~~L~-d--~~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai 130 (318)
.+...+. ..|+ + ..+.+|..|++.+....+.+.+. .+++.+++.|+.++..+|.-+|.+|
T Consensus 305 Ff~~~v~---peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVL---PELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTC---HHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhH---HHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222222 2223 2 56779999999999999888876 4577788888877776666666554
No 167
>KOG0392|consensus
Probab=91.94 E-value=7.2 Score=42.72 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=130.0
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----HHhhh----c-hHHHHHHHHHHHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL-----ELLKA----H-KKAIRRATVNTFG 96 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll-----~~L~d----~-~~~vR~~av~~lg 96 (318)
....+..+..-+-++++.+|..+..++-++.+..+...+...+..++..++ +.+.| + ...||.++.++||
T Consensus 75 f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 345555566666677899999999999999987776555444444444333 33333 1 2258999999999
Q ss_pred HHHhhhCHH---HHHHHHHHhhcccchhh--------HHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHH
Q psy10471 97 YIAKAIGPH---DVLATLLNNLKVQERQN--------RVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL 165 (318)
Q Consensus 97 ~la~~igp~---~~l~~Ll~~Lk~~~~~~--------R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al 165 (318)
.+-+.+.+. +.++.++..++.+.... |+.++.--..+...++ .+++....-+.|.+..++..+.+.+
T Consensus 155 ~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~--~vl~~~i~~L~ds~ddv~~~aa~~l 232 (1549)
T KOG0392|consen 155 AYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLN--LVLDFVIEGLEDSDDDVRSVAAQFL 232 (1549)
T ss_pred HHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhcchHHHHHHHHHh
Confidence 999988875 45666666666543322 3333311111221111 5666777777888888887777777
Q ss_pred HHHHHHHccccccchhhhHHHHHHHHhcCC------HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChH
Q psy10471 166 SFLFEYIGEMGKDYIYAVTPLLEDALMDRD------LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPH 239 (318)
Q Consensus 166 ~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~------~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~ 239 (318)
..+....-.....-+++++-.+-..+..-+ .+.|-..+..+-.. +........+.-..+-+.+||.+..+-..
T Consensus 233 ~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~~~i~s 311 (1549)
T KOG0392|consen 233 VPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLRHTISS 311 (1549)
T ss_pred hhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHHHHHHH
Confidence 666554321122223333333333332221 22222222222111 11100000111234677778888888888
Q ss_pred HHHHHHHHHHHHHHHcCh
Q psy10471 240 LVQAFMDAVEGLRVALGP 257 (318)
Q Consensus 240 vr~~ii~~i~~i~~alG~ 257 (318)
+|..+++.+..+..+-+.
T Consensus 312 v~~a~l~~l~~lle~~~q 329 (1549)
T KOG0392|consen 312 VRRAALETLAMLLEADDQ 329 (1549)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999988877654
No 168
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.63 E-value=0.33 Score=38.78 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=48.3
Q ss_pred hHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 29 NLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 29 ~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
+++..+..+|.. .+|.+-..||.-||+++...+.-...-+=...=..+++++..+++.||..|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 577778888844 46888999999999999875532111111112223567778899999999999987764
No 169
>KOG2274|consensus
Probab=91.43 E-value=22 Score=37.79 Aligned_cols=258 Identities=13% Similarity=0.146 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhhchH
Q psy10471 9 IKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKAHKK 85 (318)
Q Consensus 9 l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d~~~ 85 (318)
++++...+..+|. -..|..+.++..+.++..+.+..|-..-..+|...++.-+++-. -..+-|....+.-...+ .+
T Consensus 509 i~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~-DP 587 (1005)
T KOG2274|consen 509 ISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE-DP 587 (1005)
T ss_pred HHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC-Cc
Confidence 4445555554444 47777888888888888888888888889999998886665432 13344444433322222 22
Q ss_pred HH---HHHHHHHHHHHHhhhCHH--HHHHHHHHhhcccc-hhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHH
Q psy10471 86 AI---RRATVNTFGYIAKAIGPH--DVLATLLNNLKVQE-RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQN 159 (318)
Q Consensus 86 ~v---R~~av~~lg~la~~igp~--~~l~~Ll~~Lk~~~-~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~ 159 (318)
.| -...++.+.+.++.-||+ ..++++++.+.... ... .....
T Consensus 588 ~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~--------------------------------~~l~~ 635 (1005)
T KOG2274|consen 588 QVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAP--------------------------------AGLCA 635 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccC--------------------------------chhhH
Confidence 22 233555556666667775 34555555554221 000 22233
Q ss_pred HHHHHHHHHHHHHcccccc-chhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHhhh--------hcCCCc--hhHHHHHHH
Q psy10471 160 GVLKALSFLFEYIGEMGKD-YIYAVTPLLEDALMDR-DLVHRQTACATIKHMALG--------VYGFGC--EDALTHLLN 227 (318)
Q Consensus 160 ~vl~al~~i~~~lg~~~~~-yl~~iiP~l~~~l~~~-~~~~R~~a~~~i~~la~~--------~~~~~~--~~~i~hll~ 227 (318)
.++..++.+.+.-..-..+ .+....|.+.++.-+. |...-|++...+..+... -...|+ ...| ..+.
T Consensus 636 ~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yIm-qV~s 714 (1005)
T KOG2274|consen 636 IAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIM-QVLS 714 (1005)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHH-HHHH
Confidence 3444444444443222111 1123334444444433 344445555555554443 111122 1222 3333
Q ss_pred hhhhcccCCC--hHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhcccc-ccchHHHHHHHHHhhccccccccccCCC
Q psy10471 228 YVWPNIFETS--PHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPA-RKVRDVYWKIYNSLYIGGQDALISAYPR 300 (318)
Q Consensus 228 ~l~~~i~d~~--~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~~~a-~~~r~~~w~i~~~~~~~~~~~~~p~~p~ 300 (318)
.+++--.+++ ..+-.-++..+..+.+-+|+ |..+-.++--|.... -++....-.++..+...+.+.++-||-.
T Consensus 715 qLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 715 QLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSS 792 (1005)
T ss_pred HHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 4333322222 23444566777777777777 335555554443322 1344444455566666666677777433
No 170
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.00 E-value=2.3 Score=33.23 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred chhhhHHHHHHHHhc----CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 179 YIYAVTPLLEDALMD----RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 179 yl~~iiP~l~~~l~~----~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
++=.++-.|.+.+.+ .+...|+.+...++.+...++ ..-.....++.-.+...+ +.++++...++++..+...
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~-~~i~~~~pQI~a~L~sal--~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG-SHISSARPQIMACLQSAL--EIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHH
Confidence 333456666666666 457888999999999988443 111223333333332222 4569999999999999999
Q ss_pred cChhhHHHhHHHHh
Q psy10471 255 LGPVRILQYVLQGL 268 (318)
Q Consensus 255 lG~~~~~~~vl~~l 268 (318)
++++.+.|.+=+.+
T Consensus 85 L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 85 LDEEDLGPLLDQIF 98 (107)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988777665443
No 171
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=90.71 E-value=0.38 Score=29.83 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIAD 58 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~ 58 (318)
.++.++++++..++.+++.|+++|++++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45667777778889999999999999873
No 172
>KOG1949|consensus
Probab=90.64 E-value=20 Score=37.18 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=90.2
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC
Q psy10471 76 LLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV 152 (318)
Q Consensus 76 Ll~~L~d~~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d 152 (318)
|++-|+..+..||..|...|-..=...||. +-+++++.+ |+| .++..++|
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k------Qf~---------------------~l~~LL~d 231 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK------QFE---------------------ELYSLLED 231 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH------HHH---------------------HHHHHhcC
Confidence 447778888889988888887766666664 234444433 111 17788899
Q ss_pred CcchHH----HHHHHHHHHHHHHHccccccchhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471 153 PELNVQ----NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL-MDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLN 227 (318)
Q Consensus 153 ~~~~v~----~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l-~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~ 227 (318)
+-+.+| .+++++++.+++-+.. .-+-.++-.+.+-+ .+....+|-.....+..++-+- -.-..+..++|
T Consensus 232 ~~p~VRS~a~~gv~k~~s~fWe~iP~---~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~~Lp 305 (1005)
T KOG1949|consen 232 PYPMVRSTAILGVCKITSKFWEMIPP---TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQLLP 305 (1005)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc---cchhHHHHHHH
Confidence 999998 4456666666665442 11222323332222 2444577765555544443322 23346677888
Q ss_pred hhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 228 YVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 228 ~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
.+-+.+.|.+..||.+..+-+-.|..+
T Consensus 306 al~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 306 ALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred hcchhhhccchhHHHHHHHHHHHHHhh
Confidence 887888889999999998888777544
No 173
>KOG2933|consensus
Probab=90.59 E-value=4.4 Score=37.71 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=74.8
Q ss_pred ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 175 ~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
..-+-++.++..+.+-+++.-..+-++++.+++.+.+..+.. ..+.+.-++-.++-.-.+++.-+|..+-.++.++...
T Consensus 122 ~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 122 SLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 344566788888888888888888889999999998887511 1222233333333333456788999999999999999
Q ss_pred cChhhHHHhHHHHhccccccch
Q psy10471 255 LGPVRILQYVLQGLFHPARKVR 276 (318)
Q Consensus 255 lG~~~~~~~vl~~l~~~a~~~r 276 (318)
..+....+.++|.+.|-..++|
T Consensus 201 vtp~~~L~~L~~~~~~~n~r~r 222 (334)
T KOG2933|consen 201 VTPQKLLRKLIPILQHSNPRVR 222 (334)
T ss_pred cChHHHHHHHHHHHhhhchhhh
Confidence 9999999999999988554433
No 174
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.57 E-value=0.4 Score=30.87 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy10471 51 DLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 94 (318)
Q Consensus 51 ~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~ 94 (318)
++|+++.+.-+.....+++... +.+.+.|++++||.+|+..
T Consensus 1 k~l~~iv~~dp~ll~~~~v~~~---i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLDSSDVQSA---IIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccchHHHHHH---HHHHhcCCChHHHHHHHHH
Confidence 3678888776665544444444 5588899999999999875
No 175
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=90.47 E-value=1.9 Score=32.72 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH--HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Q psy10471 39 VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK--AIRRATVNTFGYIAKAIGPHDVLATLLNNLK 116 (318)
Q Consensus 39 ~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~--~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk 116 (318)
.|+|+..|+-|++.|+.++...+..- +.--.++...+++.+.|+++ ..+-=|+.++..+ ||+.+-..++.+++
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 35689999999999999998766432 33344677778888888433 3566677777654 55544434555443
No 176
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=90.13 E-value=6.8 Score=37.66 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=93.4
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
-+|.+|+|.+-.+..+.+. ....-..++..++....+++.+.|.+|+.||.+++-..++.+..-. =+..|++.+-|
T Consensus 83 ~ER~QALkliR~~l~~~~~-~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~g---G~~~L~~~l~d 158 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKG-PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECG---GIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcC---CHHHHHHHHHh
Confidence 3788999999999987432 2223567888888888888899999999999998865443110000 01112233333
Q ss_pred chHHHHHHHHHHHHHHHhhh------CHHHHHHHHHHhhccc-------ch--hhHHHHHHHHHHHHhh-------cC-c
Q psy10471 83 HKKAIRRATVNTFGYIAKAI------GPHDVLATLLNNLKVQ-------ER--QNRVCTTVAIAIVAET-------CS-P 139 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~i------gp~~~l~~Ll~~Lk~~-------~~--~~R~~~~~ai~~i~~~-------~~-p 139 (318)
...++-...+.++-++.+.- .+..-+..++..+-+. ++ ..-.....+|..+-.+ |. .
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 32234444444444433211 1111122222222211 11 1112234455444332 22 2
Q ss_pred ccchHHHHHHhcCCcchHHHHHHHHHHHHHH
Q psy10471 140 FTVLPALMNEYRVPELNVQNGVLKALSFLFE 170 (318)
Q Consensus 140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~ 170 (318)
+..+..++..++.|.++++..++..+-.+|.
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 5889999999999999999999877666554
No 177
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.07 E-value=1.8 Score=33.90 Aligned_cols=80 Identities=14% Similarity=0.289 Sum_probs=57.9
Q ss_pred cCCChHhHHHHHHhhcCC---C-CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh--chHHHHHHHHHHHH
Q psy10471 23 ILPHLKNLVEIIEHGLVD---E-QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA--HKKAIRRATVNTFG 96 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d---~-~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d--~~~~vR~~av~~lg 96 (318)
+.||+=.++..+-..+.| . +..-|+.+++++|.+.+.++.+++ ...+.| +..|+. ..+..|..|+++-.
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-~~~pQI----~a~L~sal~~~~l~~~al~~W~ 79 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-SARPQI----MACLQSALEIPELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-HHHHHH----HHHHHHHhCChhhHHHHHHHHH
Confidence 566777788888888888 3 344599999999999997777663 222223 333343 34589999999999
Q ss_pred HHHhhhCHHHH
Q psy10471 97 YIAKAIGPHDV 107 (318)
Q Consensus 97 ~la~~igp~~~ 107 (318)
.+.+.+++.++
T Consensus 80 ~fi~~L~~~~l 90 (107)
T PF08064_consen 80 CFIKTLDEEDL 90 (107)
T ss_pred HHHHHCCHHHH
Confidence 99988888654
No 178
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.06 E-value=0.56 Score=29.61 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q psy10471 72 ICFELLELLKAHKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 72 il~~Ll~~L~d~~~~vR~~av~~lg~la~ 100 (318)
.+..|+++|++.++.+|+.|+++++.|++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45557788899999999999999999873
No 179
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=89.65 E-value=46 Score=38.61 Aligned_cols=247 Identities=13% Similarity=0.088 Sum_probs=132.9
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHHHh
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---AREWMRICFELLELL 80 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~il~~Ll~~L 80 (318)
-|...++|+.++-..-|..++.=-+.+..++.-..+|+++..-+.|-.++..+.+..-.++. ..-+...+.-|.++-
T Consensus 1199 VrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa 1278 (1780)
T PLN03076 1199 IRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFT 1278 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHH
Confidence 36688999999988877778888888999998888899999888999999988875333331 123333333333333
Q ss_pred hhch-HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhh-cccchh-----hH--HHHHHHHHHHHhh----cCcccchHHHH
Q psy10471 81 KAHK-KAIRRATVNTFGYIAKAIGPHDVLATLLNNL-KVQERQ-----NR--VCTTVAIAIVAET----CSPFTVLPALM 147 (318)
Q Consensus 81 ~d~~-~~vR~~av~~lg~la~~igp~~~l~~Ll~~L-k~~~~~-----~R--~~~~~ai~~i~~~----~~p~~vip~L~ 147 (318)
+... ..+=-.|+..|-.++..+- ..-+..+ +.++.. .+ .........+... ..=+.++-.|-
T Consensus 1279 ~q~~~~nISL~AI~lL~~~~~~La-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076 1279 NSRFNKDISLNAIAFLRFCATKLA-----EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred hCcCcccccHHHHHHHHHHHHHHH-----hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 3211 1122223333333322220 0000000 000000 00 0000000000000 00023444566
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHHcccccc-ch----hhhHHHHHHHHhcC-----------------------CHHHH
Q psy10471 148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKD-YI----YAVTPLLEDALMDR-----------------------DLVHR 199 (318)
Q Consensus 148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~-yl----~~iiP~l~~~l~~~-----------------------~~~~R 199 (318)
....|+.++||+.+++.+=.+++..|..|.+ +. ..++..+.+.++.. +..+.
T Consensus 1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~ 1433 (1780)
T PLN03076 1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLY 1433 (1780)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHH
Confidence 6667889999999999999999888988775 32 33333333344311 11344
Q ss_pred HHHHHHHHHHhhhhcCCCchhH----HHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh
Q psy10471 200 QTACATIKHMALGVYGFGCEDA----LTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP 257 (318)
Q Consensus 200 ~~a~~~i~~la~~~~~~~~~~~----i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~ 257 (318)
.+...++..++.-.. .+-+. +..++..+..++..++..+-..-.+++..+...-|.
T Consensus 1434 eT~~~AL~~lvdLft--~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1434 ETCTLALQLVVDLFV--KFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 555555555544432 22233 333444445566667777777777787777777765
No 180
>KOG4535|consensus
Probab=89.45 E-value=3.3 Score=40.85 Aligned_cols=182 Identities=13% Similarity=0.073 Sum_probs=109.1
Q ss_pred HhHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC---
Q psy10471 28 KNLVEIIEHGLVDEQ-QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG--- 103 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig--- 103 (318)
+...+.++-.+.|.. --||.+|++++|-+.=.-+-..+......-....+..+-|....+|.-+.+++|.|.+++-
T Consensus 389 ~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~ 468 (728)
T KOG4535|consen 389 QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNM 468 (728)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC
Confidence 367788888898854 5579999999887653222111111122222334556667677789999999999887642
Q ss_pred HH----------HHHHHHHH--hhcccch-hhHHHHHHHHHHHH------hhcCcccchHHHHHHhcCCc-----chHHH
Q psy10471 104 PH----------DVLATLLN--NLKVQER-QNRVCTTVAIAIVA------ETCSPFTVLPALMNEYRVPE-----LNVQN 159 (318)
Q Consensus 104 p~----------~~l~~Ll~--~Lk~~~~-~~R~~~~~ai~~i~------~~~~p~~vip~L~~~~~d~~-----~~v~~ 159 (318)
|. .++..+.. ++-+.++ ++|--..++++... +.|+-...+..-+..+-+.+ .-|+.
T Consensus 469 Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W 548 (728)
T KOG4535|consen 469 PTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRW 548 (728)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccch
Confidence 21 22222222 1112222 56666667776432 22222244444444444433 34788
Q ss_pred HHHHHHHHHHHHHcc--ccccchhhhHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q psy10471 160 GVLKALSFLFEYIGE--MGKDYIYAVTPLLEDALMDR-DLVHRQTACATIKHM 209 (318)
Q Consensus 160 ~vl~al~~i~~~lg~--~~~~yl~~iiP~l~~~l~~~-~~~~R~~a~~~i~~l 209 (318)
.+|.++++.|+.-.. .--+.-+++.|.+..++++. +..+|.+|+.++.--
T Consensus 549 NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 549 NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 999999999985322 23355678889998888754 578999999887433
No 181
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.44 E-value=14 Score=32.29 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=51.8
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471 36 HGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL 111 (318)
Q Consensus 36 ~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~L 111 (318)
..|+-+....-.-++..++.+-+..|+.- .+.+.+++..+-++-.++...-|.++=+++|...+.|||..++..+
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~-~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~l 81 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERS-SPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSIL 81 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHC
Confidence 34433334455566677777777666543 4667777776655555566789999999999999999999776554
No 182
>KOG0413|consensus
Probab=89.40 E-value=35 Score=36.84 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=49.3
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHHHhhhchHHHHHHHHHHHHHHHhhhCH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC-FELLELLKAHKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il-~~Ll~~L~d~~~~vR~~av~~lg~la~~igp 104 (318)
++--.|.|..-|+|+.+-||+.++..|.++-+..- + .|-..+ +..+-.|-|.+..+|+-|=-.||.+-..=.|
T Consensus 1004 ~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~--v---Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI--V---KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh--h---hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 45566778888999999999999999999887432 1 232222 2233333456667888877777777665555
No 183
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.38 E-value=8.5 Score=35.43 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=79.2
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc----ccc--hhhhHHHHHHHHh--------cCCHHHHHHHHHHH
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG----KDY--IYAVTPLLEDALM--------DRDLVHRQTACATI 206 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~----~~y--l~~iiP~l~~~l~--------~~~~~~R~~a~~~i 206 (318)
-++|++++.+.|.+.+++..-++++..+.+.....- ..+ ..-+-+.+...+. +.+..+-+.+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 689999999999999999888888888887554321 111 2333344444443 33455556666666
Q ss_pred HHHhhhhcCCCc---hhHHHH-HHHhhhhcccC----CChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471 207 KHMALGVYGFGC---EDALTH-LLNYVWPNIFE----TSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF 269 (318)
Q Consensus 207 ~~la~~~~~~~~---~~~i~h-ll~~l~~~i~d----~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~ 269 (318)
-.++......+. ...+.+ +..-++.++.. +++.++...++.+..+...+|... ..+.++|.+.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 666554321221 122222 22223333332 358999999999999999999864 5555555553
No 184
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.21 E-value=11 Score=39.38 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=42.8
Q ss_pred cchHHHHHHhcCC--cchHHHHHHHHHHHHHHHHccccccch---hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 141 TVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYI---YAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 141 ~vip~L~~~~~d~--~~~v~~~vl~al~~i~~~lg~~~~~yl---~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
.+++.|...++.. +.+.--.++-++..+... .....++ .+++..+.+++.|.++.+|+.+-.++.-+++.=
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 4566666666442 233333333333333322 2223344 458888999999999999999988887765543
No 185
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.02 E-value=14 Score=35.62 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CC---HHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHH-
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQ---QKVQENCIDLVGRIADRGP---EYVSAREWMRICFELL- 77 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~---~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll- 77 (318)
.+..++..++.--++.+.||+++.+..+..+|.. .. ..+-..|+.-|+.+++... .+-..+.+..|+..++
T Consensus 115 ~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~ 194 (370)
T PF08506_consen 115 WICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIF 194 (370)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhcc
Confidence 4556666666666667889999888887776654 22 3334556666666654322 1211222333444321
Q ss_pred ----------HHhhh-------------chHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhc-ccch--hhHHH
Q psy10471 78 ----------ELLKA-------------HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLK-VQER--QNRVC 125 (318)
Q Consensus 78 ----------~~L~d-------------~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk-~~~~--~~R~~ 125 (318)
++..| +..+-|++|..-+-.+++.-+.. ..+..+++... +++. +.+-+
T Consensus 195 Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~ 274 (370)
T PF08506_consen 195 PNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDG 274 (370)
T ss_dssp HHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred CccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHH
Confidence 11122 22335677888887777654432 12333333222 1122 22222
Q ss_pred HHHHHHHHHhhc-----C-----c---------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471 126 TTVAIAIVAETC-----S-----P---------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL 186 (318)
Q Consensus 126 ~~~ai~~i~~~~-----~-----p---------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~ 186 (318)
+..-++.++... | + ..|+|-|. .-....+-++..+++.+..+-..+. ++.+..++|.
T Consensus 275 Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~ 350 (370)
T PF08506_consen 275 ALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPL 350 (370)
T ss_dssp HHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHH
Confidence 333334444221 1 0 14555554 1112223355666666654443333 5677889999
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q psy10471 187 LEDALMDRDLVHRQTACATI 206 (318)
Q Consensus 187 l~~~l~~~~~~~R~~a~~~i 206 (318)
+.+.+.+.+..++.-||.+|
T Consensus 351 l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 351 LVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhCCCCcchhhhhhhhC
Confidence 99999999999998888764
No 186
>KOG4535|consensus
Probab=88.50 E-value=0.84 Score=44.82 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC-----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH-HHHHH
Q psy10471 6 NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD-----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICF-ELLEL 79 (318)
Q Consensus 6 ~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d-----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~-~Ll~~ 79 (318)
-.+.+++|.+.++......|-..+++.-=+..+-+ ..-+||.++|.++|++-++-.-..+-..|.+++| .|+.+
T Consensus 502 ~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~L 581 (728)
T KOG4535|consen 502 SNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSL 581 (728)
T ss_pred hHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHH
Confidence 35677777777766555566666666654444444 2467999999999999986554333567888777 56677
Q ss_pred hhh-chHHHHHHHHHHHHHHHhhhCHH
Q psy10471 80 LKA-HKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 80 L~d-~~~~vR~~av~~lg~la~~igp~ 105 (318)
+.+ .+++||-.|-.++.+-++-.|-.
T Consensus 582 v~~~~NFKVRi~AA~aL~vp~~re~~~ 608 (728)
T KOG4535|consen 582 VTSCKNFKVRIRAAAALSVPGKREQYG 608 (728)
T ss_pred HHHhccceEeehhhhhhcCCCCcccch
Confidence 777 78899988777777777665544
No 187
>KOG2021|consensus
Probab=88.22 E-value=14 Score=38.61 Aligned_cols=60 Identities=17% Similarity=0.413 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHH-HHHHhhhCHHH
Q psy10471 42 QQKVQENCIDLVGRIADRGPE-YVSAREWMRICFELLELLKAHKKAIRRATVNTF-GYIAKAIGPHD 106 (318)
Q Consensus 42 ~~~vR~aa~~~LG~la~~~~~-~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~l-g~la~~igp~~ 106 (318)
+|++-..++.++|+..+|..- .+.-..+++++...+ +- ..+|.+|..++ ..+.+.|.|.+
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl---~i--eelR~aac~cilaiVsKkMkP~d 267 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFL---NI--EELRIAACNCILAIVSKKMKPMD 267 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHH---hH--HHHHHHHHHHHHHHHhcCCChhH
Confidence 799999999999999998762 221367788877544 43 67999999995 77888899973
No 188
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.93 E-value=2.8 Score=32.86 Aligned_cols=82 Identities=12% Similarity=0.185 Sum_probs=58.6
Q ss_pred cCCChHhHHHHHHhhcCCCC---HH-HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQ---QK-VQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 98 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~---~~-vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~l 98 (318)
+.+|+=.++..+...+.|.+ |- -|+.++.++|.+.+.+|.++. ...+.|+--|...| ..+..|..|+++-..+
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-~a~pQI~acL~saL--~~~eL~~~al~~W~~~ 81 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-SALPQIMACLQSAL--EIPELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 45677778888888888865 33 389999999999998777652 33333333233223 4577999999999988
Q ss_pred HhhhCHHHH
Q psy10471 99 AKAIGPHDV 107 (318)
Q Consensus 99 a~~igp~~~ 107 (318)
...+++.++
T Consensus 82 i~~L~~~~l 90 (107)
T smart00802 82 IKTLKEEEL 90 (107)
T ss_pred HHhCCHHHH
Confidence 888887643
No 189
>KOG3961|consensus
Probab=87.65 E-value=2 Score=37.87 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=54.0
Q ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC
Q psy10471 142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG 217 (318)
Q Consensus 142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~ 217 (318)
.+|.+..-+.+-+---+-.+-+.+..+....|.+..+-+|++++.+.+++.++|..+.....+++..++......|
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence 3444444333322222334445556666677888999999999999999999999999999999998877764344
No 190
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.48 E-value=1.1 Score=32.58 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 45 VQENCIDLVGRIADRGP--EYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 45 vR~aa~~~LG~la~~~~--~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
..++|++++|.+++... ++++ -..++..++++... +..++|-.|..++|-++....-.++
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~---~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~ 65 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLD---ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEI 65 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHh---hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 36899999999997422 3332 22345555566665 7788999999999999975443333
No 191
>KOG1822|consensus
Probab=87.22 E-value=63 Score=37.29 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=99.8
Q ss_pred HHHHHHHhhCCC-CCChhhHHHHHHHHH-HHhhhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccch-hhH
Q psy10471 51 DLVGRIADRGPE-YVSAREWMRICFELL-ELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQER-QNR 123 (318)
Q Consensus 51 ~~LG~la~~~~~-~i~~~~~~~il~~Ll-~~L~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~-~~R 123 (318)
.+++.+++.-+. .+.+.++-..-..++ +.+..+++..|-++.+++++++...+.. .+...+++.|++..- -.|
T Consensus 854 s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R 933 (2067)
T KOG1822|consen 854 SALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITR 933 (2067)
T ss_pred HHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHH
Confidence 356677775553 444555555554433 3344478888988999999999877632 456677777775433 466
Q ss_pred HHHHHHHHHHHhhcC---cc----cchHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh
Q psy10471 124 VCTTVAIAIVAETCS---PF----TVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM 192 (318)
Q Consensus 124 ~~~~~ai~~i~~~~~---p~----~vip~L~~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~ 192 (318)
....-|+|.+-...| +. +-+..+....+|++. .||+..++++..+..+.|..+.-|+...+.....++.
T Consensus 934 ~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl 1010 (2067)
T KOG1822|consen 934 TGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL 1010 (2067)
T ss_pred HHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC
Confidence 677888888776554 32 344456667788865 9999999999999999898888888877777777774
No 192
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=43 Score=35.09 Aligned_cols=251 Identities=10% Similarity=0.108 Sum_probs=137.6
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHh----HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKN----LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE 78 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~----l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~ 78 (318)
+++..+++++..+.... ..+.|--+. +++.++|.++++.--.|.-||..++.+.+.-++ ..-...+.....+
T Consensus 431 rq~egalr~lasi~s~i-tk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~n 506 (970)
T COG5656 431 RQAEGALRLLASIKSFI-TKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHN 506 (970)
T ss_pred HHHhhHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHH
Confidence 45667788777776622 334444332 556677888998777799999999999665444 3345556666678
Q ss_pred HhhhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhh----cccchhhHHHHHHHH-HHHHhhcCcc--cchHHHH
Q psy10471 79 LLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNL----KVQERQNRVCTTVAI-AIVAETCSPF--TVLPALM 147 (318)
Q Consensus 79 ~L~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~L----k~~~~~~R~~~~~ai-~~i~~~~~p~--~vip~L~ 147 (318)
.++++.-.||.+|--++..+...-.-+ ..++..|..| ++=+-..=.++.+++ +..++...|| .++..|.
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv 586 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLV 586 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHH
Confidence 888877778866555544332221111 1222222222 211112333445555 3455666675 3333333
Q ss_pred H----Hhc---CCc---------chHH-HHHHHHHHHHHHHHccc--cccchh-hhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10471 148 N----EYR---VPE---------LNVQ-NGVLKALSFLFEYIGEM--GKDYIY-AVTPLLEDALMDRDLVHRQTACATIK 207 (318)
Q Consensus 148 ~----~~~---d~~---------~~v~-~~vl~al~~i~~~lg~~--~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~ 207 (318)
+ ... +.+ .++. .++++.+.++.-++... .-.|+. .+.|.+.=++++.-..+-+-+.+.+.
T Consensus 587 ~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dild 666 (970)
T COG5656 587 RQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILD 666 (970)
T ss_pred HHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 221 111 1222 67888899888887653 335664 46677777777666666666666664
Q ss_pred HHhhhhcCCCchhHHHHHHHhhhhcccCCCh-HHHHHHHHHHHHHHHHcChhh
Q psy10471 208 HMALGVYGFGCEDALTHLLNYVWPNIFETSP-HLVQAFMDAVEGLRVALGPVR 259 (318)
Q Consensus 208 ~la~~~~~~~~~~~i~hll~~l~~~i~d~~~-~vr~~ii~~i~~i~~alG~~~ 259 (318)
...-..+ .-+..+-.+...+.....++.. ..-..+..+++.+..--|.++
T Consensus 667 g~tf~sk--eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef 717 (970)
T COG5656 667 GYTFMSK--EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEF 717 (970)
T ss_pred hhhHHHH--HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccc
Confidence 3322221 1112333444444444433332 455567777777766665543
No 193
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=86.88 E-value=2.7 Score=32.92 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=52.0
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE 75 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~ 75 (318)
+|..++++|+++-.++|..+...+++++-++...|.. |..|..|+.+-.-+...-. .+++.+++..
T Consensus 31 ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~----~~~l~~ll~~ 96 (107)
T smart00802 31 EKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLK----EEELGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCC----HHHHHHHHHH
Confidence 5888999999999999988888888999888888864 5699999998888777443 2455555543
No 194
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.79 E-value=11 Score=38.92 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=77.5
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHhh-------cC--c---ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc
Q psy10471 109 ATLLNNLKVQERQNRVCTTVAIAIVAET-------CS--P---FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG 176 (318)
Q Consensus 109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~-------~~--p---~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~ 176 (318)
..+...|..++...|+++..+.+.+-+. .. | ..++.-+...+.|..+.+|+-+++.+..+|+. ..++
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl-~sk~ 380 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDL-NSKT 380 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhC-cccc
Confidence 3444555666779999999999854322 11 1 14555566678899999999999999999973 4444
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
..-=++++....+.+.|++..+|+.+..+++.+-..
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 445578999999999999999999999999887543
No 195
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=86.17 E-value=33 Score=32.99 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=45.5
Q ss_pred hcCCC-CHHHHHHHHHHHHHHHhh--CCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471 37 GLVDE-QQKVQENCIDLVGRIADR--GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 37 ~l~d~-~~~vR~aa~~~LG~la~~--~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~ 105 (318)
+-+|. +..-|+.|++.+-.+.+. +...+ +.-+.+- +..+..++.++.|+.|+.|+..++ ...|.
T Consensus 75 L~~~~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vvra---lvaiae~~~D~lr~~cletL~El~-l~~P~ 141 (371)
T PF14664_consen 75 LDRDNKNDVEREQALKLIRAFLEIKKGPKEI-PRGVVRA---LVAIAEHEDDRLRRICLETLCELA-LLNPE 141 (371)
T ss_pred hcccCCChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHH---HHHHHhCCchHHHHHHHHHHHHHH-hhCHH
Confidence 33554 455699999999999986 44444 4444444 445556677889999999999988 46675
No 196
>KOG0946|consensus
Probab=86.14 E-value=44 Score=35.20 Aligned_cols=122 Identities=13% Similarity=0.197 Sum_probs=75.3
Q ss_pred chhhhHHHHHHHHHHH----hc-cCcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCC--CCCC-------hh
Q psy10471 3 SDKNLGIKIVQQIAIL----MG-CAILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGP--EYVS-------AR 67 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~----~g-~~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~--~~i~-------~~ 67 (318)
.||+.|++.|-.+|.- .| .+|.|.++.|= +| .++..-.+++.|+-.+-.... +.++ .-
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~-------~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQ-------RDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHh-------hccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 6899999988888763 23 35666443321 44 357777778888777765442 1111 12
Q ss_pred hHHHHHH--------HHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---------HHHHHHHHhhcccchhhHHHHHHHH
Q psy10471 68 EWMRICF--------ELLELLKAHKKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQERQNRVCTTVAI 130 (318)
Q Consensus 68 ~~~~il~--------~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---------~~l~~Ll~~Lk~~~~~~R~~~~~ai 130 (318)
+|..-.+ -|+..+...++.||+.++.-+..+.+.-|+. .-+..+|..|+|.....|....--+
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 2322211 1445556677889999999998888766654 1356688888876556777665533
Q ss_pred H
Q psy10471 131 A 131 (318)
Q Consensus 131 ~ 131 (318)
+
T Consensus 191 ~ 191 (970)
T KOG0946|consen 191 S 191 (970)
T ss_pred H
Confidence 3
No 197
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.68 E-value=20 Score=33.53 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=28.7
Q ss_pred ccccchhhhHHHHHHHHhc----CC------HHHHHHHHHHHHHHhhhh
Q psy10471 175 MGKDYIYAVTPLLEDALMD----RD------LVHRQTACATIKHMALGV 213 (318)
Q Consensus 175 ~~~~yl~~iiP~l~~~l~~----~~------~~~R~~a~~~i~~la~~~ 213 (318)
-..||+++++|.+..++.. .+ -.+|..|+.+++.+....
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F 318 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNF 318 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhh
Confidence 4679999999999998842 11 247888888887765544
No 198
>KOG2149|consensus
Probab=85.52 E-value=12 Score=36.11 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=55.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD 106 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~ 106 (318)
+.-+++.+++.+.+||..|+..|-++-.+-+... ....-.++..+.++.-|.+..+|.+.+..+-.+.-.++|..
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 3346667788899999999999999887622221 34555666777788888888899999888877665566553
No 199
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.87 E-value=21 Score=29.49 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=61.1
Q ss_pred HHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc-hhHHHHHHHhhhhcccC-CChHHHH
Q psy10471 165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC-EDALTHLLNYVWPNIFE-TSPHLVQ 242 (318)
Q Consensus 165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~-~~~i~hll~~l~~~i~d-~~~~vr~ 242 (318)
+..+++.++.. ...-...+-.+..-+.++++++...+..+++.++.+|+..-+ +-.=..+++.+...+.+ ..++|+.
T Consensus 21 il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ 99 (144)
T cd03568 21 ILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKE 99 (144)
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHH
Confidence 34555555443 333355777888888899999999999999999998842111 11111233333333333 6789999
Q ss_pred HHHHHHHHHHHHcChh
Q psy10471 243 AFMDAVEGLRVALGPV 258 (318)
Q Consensus 243 ~ii~~i~~i~~alG~~ 258 (318)
.+++.+..-+.+...+
T Consensus 100 kil~li~~W~~~f~~~ 115 (144)
T cd03568 100 KLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999998888643
No 200
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=84.76 E-value=38 Score=32.46 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=29.6
Q ss_pred hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh
Q psy10471 220 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR 259 (318)
Q Consensus 220 ~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~ 259 (318)
+.+...+...-.+...+++.+|..++.++..+..+...+.
T Consensus 270 ~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~ 309 (372)
T PF12231_consen 270 EHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNE 309 (372)
T ss_pred HhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 4445555554445556788999999999999999988743
No 201
>KOG2549|consensus
Probab=84.72 E-value=5.1 Score=40.00 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=57.1
Q ss_pred CcCCChHhHHHHHHhhc----------CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc--hHHHHH
Q psy10471 22 AILPHLKNLVEIIEHGL----------VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH--KKAIRR 89 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~l----------~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~--~~~vR~ 89 (318)
.+.||+.+|||-++-.+ .|.|+-.|.-|+..+++++...+..- ..--.+|...+.+.+.|+ ..+..-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 59999999999976432 24589999999999999998766432 235566777788888884 345666
Q ss_pred HHHHHHHHHHh
Q psy10471 90 ATVNTFGYIAK 100 (318)
Q Consensus 90 ~av~~lg~la~ 100 (318)
=|+.++..++.
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 67777766554
No 202
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=84.67 E-value=35 Score=32.00 Aligned_cols=151 Identities=15% Similarity=0.235 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHhhhCHH------HH----HHHH
Q psy10471 45 VQENCIDLVGRIADRGPE--YVSAREWMRICFELLELLKAHKKAIRR-ATVNTFGYIAKAIGPH------DV----LATL 111 (318)
Q Consensus 45 vR~aa~~~LG~la~~~~~--~i~~~~~~~il~~Ll~~L~d~~~~vR~-~av~~lg~la~~igp~------~~----l~~L 111 (318)
+|+..++.+....+.+.+ .+...-..|++..++..=+.+.+..|. +++..++.+.+.++.. .+ ....
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 567778888888876663 111233445555555444445666664 4777777777777752 22 3333
Q ss_pred HHhhcc--cch-hhHHHHHHHHHHHHhhcCc---------c-cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc---c
Q psy10471 112 LNNLKV--QER-QNRVCTTVAIAIVAETCSP---------F-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE---M 175 (318)
Q Consensus 112 l~~Lk~--~~~-~~R~~~~~ai~~i~~~~~p---------~-~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~---~ 175 (318)
++..+. .++ .+|.....-+..+...|.+ + .++.+++-.++.++.++-...++++..+++.... .
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 334432 233 5787777777666666653 1 5667777788999999988788888777766544 1
Q ss_pred -----cccchhhhHHHHHHHHhcCC
Q psy10471 176 -----GKDYIYAVTPLLEDALMDRD 195 (318)
Q Consensus 176 -----~~~yl~~iiP~l~~~l~~~~ 195 (318)
+..|+-.++-.+..++.|.+
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 44455556666667777776
No 203
>KOG0168|consensus
Probab=84.65 E-value=59 Score=34.58 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=105.8
Q ss_pred HHHHhhhc-hHHHHHHHHHHHHHHHhhhCH---------HHHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCc-----
Q psy10471 76 LLELLKAH-KKAIRRATVNTFGYIAKAIGP---------HDVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP----- 139 (318)
Q Consensus 76 Ll~~L~d~-~~~vR~~av~~lg~la~~igp---------~~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p----- 139 (318)
||+-|+.. .++.+-+|+.-+.+.-. ||- ..+++.|+..|+.+.. ..-..+.+|+..++|.|-+
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 34444442 45555555555555442 331 2578888888887766 4545567788888887764
Q ss_pred --ccchHHHHHHhcC-CcchHHHHHHHHHHHHHHHHccccccc--hhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 140 --FTVLPALMNEYRV-PELNVQNGVLKALSFLFEYIGEMGKDY--IYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 140 --~~vip~L~~~~~d-~~~~v~~~vl~al~~i~~~lg~~~~~y--l~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
+.++|.|...+.. +-..+-+..++|+..|.+-.+..|-.- +..++ .+.+++. .+..+.|+.........+.
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L-sylDFFS---i~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVL-SYLDFFS---IHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH-HHHHHHH---HHHHHHHHHHHHHHHhcCC
Confidence 3589999988755 445677888888888877655322110 11111 1223331 2333333333333333332
Q ss_pred CCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc--ChhhHHHhHHHHh
Q psy10471 215 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL--GPVRILQYVLQGL 268 (318)
Q Consensus 215 ~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al--G~~~~~~~vl~~l 268 (318)
.+..+.+..-+|.+.+-+...+.....++.-++.+++... |++.|.+-.=.+|
T Consensus 327 -sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dL 381 (1051)
T KOG0168|consen 327 -SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDL 381 (1051)
T ss_pred -CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhH
Confidence 1223455556676666665567777778888888888776 4454444333333
No 204
>KOG1517|consensus
Probab=84.55 E-value=22 Score=38.45 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=50.6
Q ss_pred hHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhh------CCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471 29 NLVEIIEHGLVDE-QQKVQENCIDLVGRIADR------GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 101 (318)
Q Consensus 29 ~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~------~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ 101 (318)
+++.+.+..++|. +|-.|.=++-+||+|=+. .|-... -...|+..|+|+.+.||.+|+-+||.+...
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~------AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDN------AHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccccc------HHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 5677888999994 799999999999998653 332111 223456777999999999999999987653
No 205
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.33 E-value=11 Score=37.88 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhccC-cCCChHhHHHHHHhhcCCC--CHHHHHHHHHHH---HHHHhhCCCCCChhhHHHHHH-HHHHHhh
Q psy10471 9 IKIVQQIAILMGCA-ILPHLKNLVEIIEHGLVDE--QQKVQENCIDLV---GRIADRGPEYVSAREWMRICF-ELLELLK 81 (318)
Q Consensus 9 l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l~d~--~~~vR~aa~~~L---G~la~~~~~~i~~~~~~~il~-~Ll~~L~ 81 (318)
.++++-|.....+. .. +.++.++...+... +.+.|..++.-+ .......++.+ ...+-+.+. .++..+.
T Consensus 301 ~kIL~~L~kS~~Aa~~~---~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~-l~~l~~~i~~~g~p~~~ 376 (501)
T PF13001_consen 301 EKILSLLSKSVIAATSF---PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQI-LKLLRPVILSQGWPLIQ 376 (501)
T ss_pred HHHHHHHHHhHHHHhCC---ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHH-HHHHHHHHHhcCccccc
Confidence 35666666643332 33 44555555566665 678899999988 77777666543 455555444 5666663
Q ss_pred ------h--chHHHHHHHHHHHHHHHhhhCH-----HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC
Q psy10471 82 ------A--HKKAIRRATVNTFGYIAKAIGP-----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS 138 (318)
Q Consensus 82 ------d--~~~~vR~~av~~lg~la~~igp-----~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~ 138 (318)
. .....|..+.+++|.+++.... ..++.-|++.|.+++...|..+-.|++.++..+.
T Consensus 377 ~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 377 DSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 1 3456899999999999987653 3678889999977777899999999987665443
No 206
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.30 E-value=23 Score=36.01 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=78.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471 152 VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP 231 (318)
Q Consensus 152 d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~ 231 (318)
.++..|+.-.++-+.-+....|..-..-.+.++-.+...+-|+.+.+|..|..+++..-+-- ...+..+..++..+++
T Consensus 102 skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~--~neen~~~n~l~~~vq 179 (885)
T COG5218 102 SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME--LNEENRIVNLLKDIVQ 179 (885)
T ss_pred CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHh
Confidence 34566776666666666666554333344566677777777999999999999998874322 1234455566666666
Q ss_pred cccCCChHHHHHHHHHH-----------HHHHHHcChhh--HHHhHHHHh-----ccccccchHHHHH
Q psy10471 232 NIFETSPHLVQAFMDAV-----------EGLRVALGPVR--ILQYVLQGL-----FHPARKVRDVYWK 281 (318)
Q Consensus 232 ~i~d~~~~vr~~ii~~i-----------~~i~~alG~~~--~~~~vl~~l-----~~~a~~~r~~~w~ 281 (318)
+ |++.+||..++-.| |+...+=|... +-.+++|-+ +.-.++++-.-|.
T Consensus 180 n--DPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewg 245 (885)
T COG5218 180 N--DPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWG 245 (885)
T ss_pred c--CcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhc
Confidence 6 68999999887654 33333333332 566677776 2233455545554
No 207
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.30 E-value=9.6 Score=39.38 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHHhcc--CcCC----ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGC--AILP----HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELL 77 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~--~~~P----~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll 77 (318)
|+..+++.+-+..-... .|.- -++.++.++.+-+.|.+|-+|.-|+.-+..+.+...-+.. -.++.+++.
T Consensus 316 Rc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~--- 392 (1128)
T COG5098 316 RCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVG--- 392 (1128)
T ss_pred HHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHH---
Confidence 56667777766654322 2444 5677888899999999999999999999999985544433 466666655
Q ss_pred HHhhhchHHHHHHHHHHHHHHH
Q psy10471 78 ELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 78 ~~L~d~~~~vR~~av~~lg~la 99 (318)
+.++|...-|||.|++-+..+-
T Consensus 393 r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 393 RRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHhhhhhHHHHHHHHHHHHHHH
Confidence 7779988889999999987754
No 208
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.06 E-value=56 Score=33.07 Aligned_cols=173 Identities=16% Similarity=0.152 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-Ccc-cchHHHHHHhcCC----cchHHH
Q psy10471 86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-SPF-TVLPALMNEYRVP----ELNVQN 159 (318)
Q Consensus 86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-~p~-~vip~L~~~~~d~----~~~v~~ 159 (318)
..|...++++...+ . ...+..+.+.++..+... ...+..+..+.... .|+ .++..+....+++ +..++.
T Consensus 341 ~~r~~~~Dal~~~G--T--~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~ 415 (574)
T smart00638 341 KARRIFLDAVAQAG--T--PPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRE 415 (574)
T ss_pred HHHHHHHHHHHhcC--C--HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHH
Confidence 35555666655544 2 223444444444332211 11223333333332 354 6666677766654 234556
Q ss_pred HHHHHHHHHHHHHcc---ccccc-hhhhHHHHHHH----HhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471 160 GVLKALSFLFEYIGE---MGKDY-IYAVTPLLEDA----LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP 231 (318)
Q Consensus 160 ~vl~al~~i~~~lg~---~~~~y-l~~iiP~l~~~----l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~ 231 (318)
.++-+++.+....-. .+.+. +..++|.+.+. ....+...+..++.++| ..|....+..+.+++.
T Consensus 416 sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG-------N~g~~~~i~~l~~~l~- 487 (574)
T smart00638 416 SALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG-------NAGHPSSIKVLEPYLE- 487 (574)
T ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh-------ccCChhHHHHHHHhcC-
Confidence 666666666653211 11111 13444444444 44556666777777774 4467777777877763
Q ss_pred cccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcccc
Q psy10471 232 NIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPA 272 (318)
Q Consensus 232 ~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~~a 272 (318)
.-.+.++.+|..++.++..++. .-++...+.+++.+...+
T Consensus 488 ~~~~~~~~iR~~Av~Alr~~a~-~~p~~v~~~l~~i~~n~~ 527 (574)
T smart00638 488 GAEPLSTFIRLAAILALRNLAK-RDPRKVQEVLLPIYLNRA 527 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHcCCC
Confidence 3234567899999999998865 346778888888886533
No 209
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=83.01 E-value=1.3 Score=25.43 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Q psy10471 87 IRRATVNTFGYIAKAIGPHDVLATLLNNLK 116 (318)
Q Consensus 87 vR~~av~~lg~la~~igp~~~l~~Ll~~Lk 116 (318)
||++|.+++|+++. ...++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd----~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----HHHHHHHHHHhc
Confidence 68999999998775 456777776665
No 210
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=82.17 E-value=20 Score=29.21 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=67.1
Q ss_pred HHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh--chHH-
Q psy10471 14 QIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA--HKKA- 86 (318)
Q Consensus 14 ~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d--~~~~- 86 (318)
+++...... .-...+.+..|...|++.+|.++.-|+..|-.+..++|+.+. -++|+..+..+ +++ ....
T Consensus 28 ~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l---~~~~~~~~~~ 103 (140)
T PF00790_consen 28 EICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKL---IKSKKTDPET 103 (140)
T ss_dssp HHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHH---HHHTTTHHHS
T ss_pred HHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHH---HccCCCCchh
Confidence 344433333 444578888899999999999999999999999999985331 25566665544 455 2222
Q ss_pred -HHHHHHHHHHHHHhhhC---HHHHHHHHHHhhc
Q psy10471 87 -IRRATVNTFGYIAKAIG---PHDVLATLLNNLK 116 (318)
Q Consensus 87 -vR~~av~~lg~la~~ig---p~~~l~~Ll~~Lk 116 (318)
||.-++..+..-+...+ .+..+..+-+.||
T Consensus 104 ~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk 137 (140)
T PF00790_consen 104 PVKEKILELLQEWAEAFKSDPELSLIQDTYKRLK 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHH
Confidence 89999998888887773 2344555555544
No 211
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.88 E-value=44 Score=31.03 Aligned_cols=176 Identities=18% Similarity=0.160 Sum_probs=88.9
Q ss_pred CChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHH-----HHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMR-----ICFELLELLKAHKKAIRRATVNTFGYI 98 (318)
Q Consensus 25 P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~-----il~~Ll~~L~d~~~~vR~~av~~lg~l 98 (318)
-|..-++.++-.. ..++.+.+..+..++.+.+..+.... ..++.. .+..+++++..++..++..|...++.+
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444444433333 45788999999999999987774432 111111 344566666777788999999999988
Q ss_pred HhhhCH---H---HHHHHHHHhhcccch----hhHHHHHHHHHHHHh--h----cCcccchHHHHHHh-----cCCcchH
Q psy10471 99 AKAIGP---H---DVLATLLNNLKVQER----QNRVCTTVAIAIVAE--T----CSPFTVLPALMNEY-----RVPELNV 157 (318)
Q Consensus 99 a~~igp---~---~~l~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~--~----~~p~~vip~L~~~~-----~d~~~~v 157 (318)
...-++ . ++++.+++.++.... .....++.+++.+.. . +.....++.+++.+ .+....+
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 864432 2 467777777764322 333455566655431 1 11135666777777 2333344
Q ss_pred H-----HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC--HHHHHHHHHH
Q psy10471 158 Q-----NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD--LVHRQTACAT 205 (318)
Q Consensus 158 ~-----~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~ 205 (318)
| ..++-.+++--+..+.....| ++|.+.++++... ..+|-..+..
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHH
Confidence 3 223333443333333333334 8899999997664 4555544443
No 212
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.56 E-value=5.2 Score=34.94 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC
Q psy10471 157 VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET 236 (318)
Q Consensus 157 v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~ 236 (318)
.-..+++.++.+|+.+|..+.+++..++-.+.+.-.+.+..+|+.+-.+++.....+ |-+..+ .++|.-+++ -+.
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~am---Gpe~vL-~~lPLnl~~-~~~ 90 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAM---GPEQVL-SILPLNLDN-ADD 90 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHC---CHHHHH-HHCCCCccC-CCc
Confidence 447799999999999998887777777777777767777889999999888887776 443333 333432221 112
Q ss_pred ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc
Q psy10471 237 SPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF 269 (318)
Q Consensus 237 ~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~ 269 (318)
...-|.-.+-.+..-...-.-.+|..+++|..-
T Consensus 91 ~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 91 SQPGRAWLLPLLRDHIRNASLSFFVEEFLPLAR 123 (198)
T ss_pred CCcccchhHHHHHHhccCCChHHHHHHHHHHHH
Confidence 222344444444443222233679999999883
No 213
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=80.48 E-value=26 Score=27.62 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=48.0
Q ss_pred ChHhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCC-h-hhHHHHHHHHHHHhhh---chH-HHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVS-A-REWMRICFELLELLKA---HKK-AIRRATVNTFGYI 98 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~-~-~~~~~il~~Ll~~L~d---~~~-~vR~~av~~lg~l 98 (318)
|+++++..+. .|. ++...+.|+++...+....+.+.. . .....++..|+.+-+. +++ ..|..|+.++..
T Consensus 4 YlrDll~~L~---~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v- 79 (114)
T PF10193_consen 4 YLRDLLEYLR---SDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVV- 79 (114)
T ss_dssp -HHHHHHHHT---------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHH-
T ss_pred hHHHHHHHHh---cCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHH-
Confidence 4455554443 233 577789999999999987776443 2 3333344444433332 344 478888887765
Q ss_pred HhhhCHHHHHHHHHHhhcccch--hhHHHHHHHHH
Q psy10471 99 AKAIGPHDVLATLLNNLKVQER--QNRVCTTVAIA 131 (318)
Q Consensus 99 a~~igp~~~l~~Ll~~Lk~~~~--~~R~~~~~ai~ 131 (318)
..|..+.+.|.+.+-..++ +.|.....+++
T Consensus 80 ---~~P~~~~~~L~~~f~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 80 ---AAPEKVAPYLTEEFFSGDYSLQQRMSILSALS 111 (114)
T ss_dssp ---HSGGGHHH-HHHHHTTS---THHHHHHHHHHH
T ss_pred ---HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455555555555544443 56666555543
No 214
>KOG2149|consensus
Probab=80.23 E-value=48 Score=31.98 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=78.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC
Q psy10471 73 CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV 152 (318)
Q Consensus 73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d 152 (318)
+.+|+..++-.+..+|..|+.++-.+-.. -|..+..++-..+. -+.....|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~----------------------------~~~~~i~D 110 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQ----------------------------KLRELILD 110 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHH----------------------------HhhhhhcC
Confidence 34567777888999999999999887765 45433222222221 02222345
Q ss_pred CcchHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 153 PELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 153 ~~~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
.+..+|....+.+..+.-..+. ...+++.-++|.+.-++++..+.+|.-+...+..++..+.
T Consensus 111 ~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 111 DDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred ccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 5667777777777774433333 3578888999999999999999999988888888877774
No 215
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.66 E-value=17 Score=30.01 Aligned_cols=75 Identities=20% Similarity=0.112 Sum_probs=58.2
Q ss_pred ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhc
Q psy10471 140 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-RDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~-~~~~~R~~a~~~i~~la~~~~ 214 (318)
-.++-++...++..++.++..++..+..+.+.-|..|-..+ ..++..+.+++.+ .+..+|+-+..++...+...+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 35555677777777888888899999999999887665555 3577777777776 678999999999988877664
No 216
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=79.54 E-value=14 Score=31.40 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=59.7
Q ss_pred CcCCChHhHHHHHHhhcC------------------CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 22 AILPHLKNLVEIIEHGLV------------------DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~l~------------------d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
.+.|++++++|.+.+-.+ |+--.+|.+|-.++-.+-+.+...++..++... +..-|+|
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~---v~~GL~D- 77 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDR---VEAGLKD- 77 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHH---HHHTTSS-
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH---HHhhcCC-
Confidence 378999999999874332 223568999999999999988877765555444 4466788
Q ss_pred hHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 84 KKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~igp~~~l 108 (318)
+..||-.+.-.+..++. ..|..+.
T Consensus 78 ~~DIk~L~~~~l~kl~~-~~p~~v~ 101 (169)
T PF08623_consen 78 EHDIKMLCHLMLSKLAQ-LAPEEVL 101 (169)
T ss_dssp -HHHHHHHHHHHHHHHH-S-HHHHH
T ss_pred cHHHHHHHHHHHHHHHH-hCHHHHH
Confidence 77799999999999885 6676443
No 217
>KOG2160|consensus
Probab=79.38 E-value=58 Score=30.90 Aligned_cols=140 Identities=12% Similarity=0.136 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhccc
Q psy10471 42 QQKVQENCIDLVGRIADRGP---EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ 118 (318)
Q Consensus 42 ~~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~ 118 (318)
++.=+..|+..|-.+++... +.++..-|.+++. .+++....+|+.|.+++|..+..-.+.+. .++.
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe--~v~E----- 164 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQE--QVIE----- 164 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHH--HHHH-----
Confidence 45668899999999987544 3332344454433 55888889999999999998874433210 0000
Q ss_pred chhhHHHHHHHHHHHHhhcCcccchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc--
Q psy10471 119 ERQNRVCTTVAIAIVAETCSPFTVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-- 193 (318)
Q Consensus 119 ~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~-- 193 (318)
...++.|+..+ ++....+++.++-|++...+.-......|+ +. .-.+.+++..
T Consensus 165 ---------------------~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~ 222 (342)
T KOG2160|consen 165 ---------------------LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNN 222 (342)
T ss_pred ---------------------cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCC
Confidence 01223355544 333445666777777766654332222222 11 2346677766
Q ss_pred CCHHHHHHHHHHHHHHhhhhc
Q psy10471 194 RDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 194 ~~~~~R~~a~~~i~~la~~~~ 214 (318)
.+...++-++.++..+.+.-+
T Consensus 223 ~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 223 TSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cchHHHHHHHHHHHHHHHhhh
Confidence 456667777888877766653
No 218
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=79.14 E-value=3.6 Score=31.21 Aligned_cols=55 Identities=7% Similarity=0.184 Sum_probs=42.9
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIAD 58 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~ 58 (318)
..||.++-.|+.+...-.-.+-||+++++..+....+| ...++..+=++|++.=.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 47899999999988877778999999999998888886 56789999999988764
No 219
>KOG1992|consensus
Probab=78.94 E-value=94 Score=33.02 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=44.4
Q ss_pred cCCcchHH-HHHHHHHHHHHHHHccc----cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHH
Q psy10471 151 RVPELNVQ-NGVLKALSFLFEYIGEM----GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL 225 (318)
Q Consensus 151 ~d~~~~v~-~~vl~al~~i~~~lg~~----~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hl 225 (318)
|.|+.... .-.+++++-++...+.. ...+...++|.|+.++.+.-..+---..++++-+.+...+.--++...-+
T Consensus 603 KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~ 682 (960)
T KOG1992|consen 603 KNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLF 682 (960)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Confidence 44443332 33455555555544432 23455678888888887666555555666666666666542122322223
Q ss_pred HHhhhhcccC
Q psy10471 226 LNYVWPNIFE 235 (318)
Q Consensus 226 l~~l~~~i~d 235 (318)
.+.+.|.+++
T Consensus 683 ~~lLsp~lW~ 692 (960)
T KOG1992|consen 683 PPLLSPNLWK 692 (960)
T ss_pred HHhcCHHHHh
Confidence 3333455554
No 220
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=78.56 E-value=22 Score=28.04 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=61.3
Q ss_pred cchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc-
Q psy10471 178 DYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL- 255 (318)
Q Consensus 178 ~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al- 255 (318)
++++.++|.+.+.+. ...+.+|-++-..++.++..+.. ..+.+..+..-+......... ....+-++..++..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~ 77 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQE 77 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccc
Confidence 578899999999999 66789999999999999888752 345666666665555433332 345666777777777
Q ss_pred ChhhHHHhHHHHh
Q psy10471 256 GPVRILQYVLQGL 268 (318)
Q Consensus 256 G~~~~~~~vl~~l 268 (318)
+.+.+...++..+
T Consensus 78 ~~~~lp~~~~~~l 90 (121)
T PF12397_consen 78 NVDSLPRKVFKAL 90 (121)
T ss_pred ccccCCHHHHHHH
Confidence 5555555555555
No 221
>PF05536 Neurochondrin: Neurochondrin
Probab=78.49 E-value=81 Score=32.02 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=104.1
Q ss_pred hhhCHHHHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcC-------c--ccchHHHHHHhcCCcc-hHHHHHHHHHHHH
Q psy10471 100 KAIGPHDVLATLLNNLKVQER-QNRVCTTVAIAIVAETCS-------P--FTVLPALMNEYRVPEL-NVQNGVLKALSFL 168 (318)
Q Consensus 100 ~~igp~~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~-------p--~~vip~L~~~~~d~~~-~v~~~vl~al~~i 168 (318)
+.+|| ..++.|++.-..++. ..+.+...|+++++--|. | ..-+|.|++.+..++. ++-.-+++++..+
T Consensus 48 ~aig~-~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~I 126 (543)
T PF05536_consen 48 EAIGF-KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAI 126 (543)
T ss_pred HhcCh-hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 56676 477888776554433 344455555555543332 2 2789999999987766 7778888888888
Q ss_pred HHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC---CchhHHHHHHHhhhhcccCCChHHHHHH
Q psy10471 169 FEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF---GCEDALTHLLNYVWPNIFETSPHLVQAF 244 (318)
Q Consensus 169 ~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~---~~~~~i~hll~~l~~~i~d~~~~vr~~i 244 (318)
. +.....+..+ ...+|.+...+.+ .+.....+..++..+....... .+...+..+.+.+-..........+-.+
T Consensus 127 a-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfel 204 (543)
T PF05536_consen 127 A-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFEL 204 (543)
T ss_pred H-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 8 3222223333 3477777777766 4555677777777765554211 1223334444443222211222333444
Q ss_pred HHHHHHHHHHcC--------hhhHHHhHHHHhcc-----ccccchHHHHHHHHHhh
Q psy10471 245 MDAVEGLRVALG--------PVRILQYVLQGLFH-----PARKVRDVYWKIYNSLY 287 (318)
Q Consensus 245 i~~i~~i~~alG--------~~~~~~~vl~~l~~-----~a~~~r~~~w~i~~~~~ 287 (318)
++-+..+-...+ .....+++..|+-+ +.+.-|+.+..++.++-
T Consensus 205 l~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 205 LEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 555544444332 12356666666632 55667788888776553
No 222
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.05 E-value=63 Score=29.99 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHhccC---cCCChH----hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy10471 6 NLGIKIVQQIAILMGCA---ILPHLK----NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE 78 (318)
Q Consensus 6 ~~~l~~i~~La~~~g~~---~~P~l~----~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~ 78 (318)
+..+..++++....... +..+-. .....++..+..+++.++..|+..++.++..++... ......++..+++
T Consensus 75 ~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~ 153 (312)
T PF03224_consen 75 QYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQ 153 (312)
T ss_dssp HHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHH
Confidence 35666777766643321 111110 123334456677789999999999999998777644 2211223333334
Q ss_pred Hhhh----chHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhccc----ch---hhHHHHHHHHH------HHH
Q psy10471 79 LLKA----HKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQ----ER---QNRVCTTVAIA------IVA 134 (318)
Q Consensus 79 ~L~d----~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~----~~---~~R~~~~~ai~------~i~ 134 (318)
.+++ ++...+..|+.+++.+.. ..++ ..+..+++.|+.. .. |.-+.+.-++= .++
T Consensus 154 ~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~ 232 (312)
T PF03224_consen 154 WLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIA 232 (312)
T ss_dssp HHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHH
Confidence 4444 444577889999998874 3333 3466677777211 11 33333333331 122
Q ss_pred hhcCcccchHHHHHHhcCCcch-HHHHHHHHHHHHHH
Q psy10471 135 ETCSPFTVLPALMNEYRVPELN-VQNGVLKALSFLFE 170 (318)
Q Consensus 135 ~~~~p~~vip~L~~~~~d~~~~-v~~~vl~al~~i~~ 170 (318)
+......++|.|.+..++...+ +-+.++.++.++..
T Consensus 233 ~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 233 EELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred HHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 2222223999999988876433 33555555554443
No 223
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=76.87 E-value=26 Score=29.30 Aligned_cols=102 Identities=12% Similarity=0.149 Sum_probs=66.3
Q ss_pred chhhhHHHHHHHHHHHhccCcCC-----Ch-----HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHH
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILP-----HL-----KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRI 72 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P-----~l-----~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~i 72 (318)
.-|..|++++..+-...|..+.. .+ +.+.+.++..+...++.+=..+++.+..+...-..+. ..|..-+
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L-k~ele~~ 115 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL-KLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34678888998888888876552 12 3455556666666667777788888888887655443 3444444
Q ss_pred HHHHHH-Hhhhc--hHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 73 CFELLE-LLKAH--KKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 73 l~~Ll~-~L~d~--~~~vR~~av~~lg~la~~igp~~~ 107 (318)
+..++. ++..+ ..+.|..+++.+..+.+ .|.-+
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~--~p~~l 151 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK--DPQFL 151 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh--ChhHH
Confidence 444443 55553 35688889999888875 55433
No 224
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.75 E-value=24 Score=28.68 Aligned_cols=85 Identities=13% Similarity=-0.013 Sum_probs=60.9
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCC-H-H--HHHHHHHHHHHHhhhhc
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRD-L-V--HRQTACATIKHMALGVY 214 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~-~-~--~R~~a~~~i~~la~~~~ 214 (318)
.++-++.+.++.++++++.-++..+..+++.-|..|-..+ ..++..+..++.+.. . . +|+.+..++..-+...+
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 4555677777778889998889999999999887765555 457777888776544 2 3 89999999988877775
Q ss_pred CCCchhHHHHH
Q psy10471 215 GFGCEDALTHL 225 (318)
Q Consensus 215 ~~~~~~~i~hl 225 (318)
..+.-..+...
T Consensus 122 ~~~~~~~i~~~ 132 (140)
T PF00790_consen 122 SDPELSLIQDT 132 (140)
T ss_dssp TSTTGHHHHHH
T ss_pred CCCCchHHHHH
Confidence 43333344333
No 225
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=76.43 E-value=15 Score=29.43 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccc-hh
Q psy10471 43 QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE-RQ 121 (318)
Q Consensus 43 ~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~-~~ 121 (318)
+.||.-.+.++..++.... +..|...+..+++.++. ++......++.+..+.+.+..+ -+... .+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~----P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~---------~~~~~~~~ 67 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDW----PQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDF---------RRSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTS---------HCCHSHHH
T ss_pred hhHHHHHHHHHHHHHHHHC----hhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhh---------hchhhhHH
Confidence 4578888899999997543 34555566666666666 3555666777777777655320 00000 01
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHhcCCc----chHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCC
Q psy10471 122 NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE----LNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRD 195 (318)
Q Consensus 122 ~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~----~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~ 195 (318)
.|..+-.++.... ..++..+.+.+.... .++...+++++.+.++.+.. .++ ..+++.+.+.+.+.+
T Consensus 68 r~~~l~~~l~~~~-----~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~---~~i~~~~~l~~~~~~l~~~~ 139 (148)
T PF08389_consen 68 RRRELKDALRSNS-----PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI---ELIINSNLLNLIFQLLQSPE 139 (148)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H---HHHHSSSHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH---HHhccHHHHHHHHHHcCCHH
Confidence 2222222221110 023333444443322 55667788888877764332 222 347888888884443
Q ss_pred HHHHHHHHHH
Q psy10471 196 LVHRQTACAT 205 (318)
Q Consensus 196 ~~~R~~a~~~ 205 (318)
.|..|++.
T Consensus 140 --~~~~A~~c 147 (148)
T PF08389_consen 140 --LREAAAEC 147 (148)
T ss_dssp --CHHHHHHH
T ss_pred --HHHHHHHh
Confidence 35555554
No 226
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.95 E-value=27 Score=28.68 Aligned_cols=75 Identities=21% Similarity=0.113 Sum_probs=54.9
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcC
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYG 215 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~ 215 (318)
.++-++.+.++..+++++.-++..+..+.+.-|..|-.-+ ..++..+.+++. ..++.+|+-+..++..-+...++
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4455566777777788888888888999988887655444 346666777665 55689999999999888777653
No 227
>KOG2022|consensus
Probab=75.76 E-value=1.2e+02 Score=32.52 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccch
Q psy10471 43 QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH--KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER 120 (318)
Q Consensus 43 ~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~--~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~ 120 (318)
..+-++++-.+-.+|+..+.. ...|.|-++++..-.+-. +++.-+.+..++|.++.-.+.+-
T Consensus 481 ~~~tEaci~~~~sva~~~~~t--~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-------------- 544 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGET--ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-------------- 544 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcc--hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--------------
Confidence 444577777777777755542 345555555444333332 45555556666666665443210
Q ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC--HHH
Q psy10471 121 QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD--LVH 198 (318)
Q Consensus 121 ~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~--~~~ 198 (318)
.+-+..+|.|.+.+..++.+.+.. ..+..+++.-.....+|...++.....++.... .+.
T Consensus 545 ----------------~~ln~sl~~L~~~Lh~sk~s~q~i--~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~ 606 (982)
T KOG2022|consen 545 ----------------MYLNPSLPLLFQGLHNSKESEQAI--STLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSD 606 (982)
T ss_pred ----------------cccCchHHHHHHHhcCchHHHHHH--HHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchH
Confidence 000245666777776555554422 226666666666778899988888888886543 577
Q ss_pred HHHHHHHHHHHhhhhc
Q psy10471 199 RQTACATIKHMALGVY 214 (318)
Q Consensus 199 R~~a~~~i~~la~~~~ 214 (318)
|..+...||.+.+..+
T Consensus 607 ~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 607 RLKLMKSIGYVLSRLK 622 (982)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8888888888877664
No 228
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=75.41 E-value=72 Score=29.87 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=41.7
Q ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
..|.+.--+......|+...++-+...+--+|....+.++.++..+.--+.+....+......++..+...++
T Consensus 98 ~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 98 YSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 3445555555555666666666666655555654444444444444444455566666666777777766653
No 229
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.34 E-value=26 Score=28.29 Aligned_cols=75 Identities=16% Similarity=-0.005 Sum_probs=55.2
Q ss_pred ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-h-hhHHHHHHHHhc---CCHHHHHHHHHHHHHHhhhhc
Q psy10471 140 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-Y-AVTPLLEDALMD---RDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~-~iiP~l~~~l~~---~~~~~R~~a~~~i~~la~~~~ 214 (318)
..++-++...++.+++.++.-++..+..+.+.-|..|-..+ . .++-.+.+++.. .+..+|+-+..++..-+...+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35566677777778888888889999999998887554333 1 344446666654 468999999999988887765
No 230
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.19 E-value=66 Score=29.35 Aligned_cols=180 Identities=14% Similarity=0.143 Sum_probs=106.5
Q ss_pred CChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChh------hHHHHHHHHHHHhhhch-----HHHHHHHH
Q psy10471 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAR------EWMRICFELLELLKAHK-----KAIRRATV 92 (318)
Q Consensus 25 P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~------~~~~il~~Ll~~L~d~~-----~~vR~~av 92 (318)
..-+.+.+++...++..+ --..+++.+.+++.... +.++.. -+.-.+..++..+.+++ +.++. +-
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~-~A 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIE-IA 136 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHH-HH
Confidence 344568888888886643 45678888888886432 222211 11222223344444433 23333 33
Q ss_pred HHHHHHHhhhCHHHHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCc---ccchHHHHHHhcCCcchHHHHHHHHHHHH
Q psy10471 93 NTFGYIAKAIGPHDVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP---FTVLPALMNEYRVPELNVQNGVLKALSFL 168 (318)
Q Consensus 93 ~~lg~la~~igp~~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p---~~vip~L~~~~~d~~~~v~~~vl~al~~i 168 (318)
..++.+++.-|-. -+.+.+..+..... ..---+.+++..+.+.|.| +.++--|+..+..+...+|..+++.+..+
T Consensus 137 ~~La~~a~~~~~~-~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~l 215 (262)
T PF14225_consen 137 EALAQVAEAQGLP-NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVL 215 (262)
T ss_pred HHHHHHHHhCCCc-cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6667766543322 23334443322222 2223345666788888887 37777788888888889999999999999
Q ss_pred HHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 169 FEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 169 ~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
++....+ ++..++++-.+.+.+.+. +-..|.+++..+...
T Consensus 216 l~~~d~~-~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 216 LPHVDMR-SPHGADLISPLLRLLQTD---LWMEALEVLDEIVTR 255 (262)
T ss_pred hccccCC-CCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhh
Confidence 9987655 456677777778877544 334455555544443
No 231
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=75.08 E-value=42 Score=27.07 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=61.9
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA--HKKAIRRATVNTFGYIA 99 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d--~~~~vR~~av~~lg~la 99 (318)
...+.+..+...+++.+|.|..-|+..|..+..++|..+. -++|+..+. .++++ ..+.||..++..+..-+
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~---~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV---KLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH---HHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4467888889999999999999999999999999985332 356666544 44466 23348988888888877
Q ss_pred hhhC--H-HHHHHHHHHhhc
Q psy10471 100 KAIG--P-HDVLATLLNNLK 116 (318)
Q Consensus 100 ~~ig--p-~~~l~~Ll~~Lk 116 (318)
..+. | +..+..+-+.|+
T Consensus 111 ~~f~~~~~~~~i~~~y~~L~ 130 (133)
T smart00288 111 DAFKNDPDLSQIVDVYDLLK 130 (133)
T ss_pred HHHcCCCCchHHHHHHHHHH
Confidence 7663 2 234444444443
No 232
>KOG2549|consensus
Probab=74.66 E-value=71 Score=32.20 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=59.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCc
Q psy10471 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 154 (318)
Q Consensus 75 ~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~ 154 (318)
++.+.+-+.+...|.+|+.++.. .-|=+.+++.+...+-.+-+.+
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fIae~vs~n-------------------------------- 255 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET---DSGLQQLLPYFVTFIAEGVSVN-------------------------------- 255 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc---CccHHHHHHHHHHHHhhheeec--------------------------------
Confidence 44455555666788888888753 3444556666555443221110
Q ss_pred chHH-HHHHHHHHHHHHHH----ccccccchhhhHHHHHHHHhcCC----------HHHHHHHHHHHHHHhhhh
Q psy10471 155 LNVQ-NGVLKALSFLFEYI----GEMGKDYIYAVTPLLEDALMDRD----------LVHRQTACATIKHMALGV 213 (318)
Q Consensus 155 ~~v~-~~vl~al~~i~~~l----g~~~~~yl~~iiP~l~~~l~~~~----------~~~R~~a~~~i~~la~~~ 213 (318)
-..+ -..+.-++.+..++ .....+|+++++|.+..++-.+. =.+|..++.++..+....
T Consensus 256 i~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f 329 (576)
T KOG2549|consen 256 IVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNF 329 (576)
T ss_pred cccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhh
Confidence 0001 12223333344443 22467999999999999984332 368899999987765544
No 233
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=74.45 E-value=31 Score=27.90 Aligned_cols=75 Identities=11% Similarity=-0.052 Sum_probs=56.6
Q ss_pred ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhc
Q psy10471 140 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRD--LVHRQTACATIKHMALGVY 214 (318)
Q Consensus 140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~ 214 (318)
-.++-++...++.+++.++.-++..+..+.+.-|..|-..+ ..++..+.+++.+.. +.+|+.+..++..-+...+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 35566677788888888888889999999999887775555 347777777776544 3488888888888777665
No 234
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=74.13 E-value=94 Score=30.60 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhc----ccch-hhHHHHHHHHHHHHh-h
Q psy10471 69 WMRICFELLELLKA----HKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLK----VQER-QNRVCTTVAIAIVAE-T 136 (318)
Q Consensus 69 ~~~il~~Ll~~L~d----~~~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk----~~~~-~~R~~~~~ai~~i~~-~ 136 (318)
..+++..|+..+.. ++..+=++.++.+..+.+.+.|+ .+++.|...++ .+++ +.=...-++++.+-. .
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 34455555555543 46667788888888888888886 56777777664 3333 222233455543321 1
Q ss_pred cC-------cc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc-cccccchhhhHHHHH--HHHhcCCHHHHHHHHH
Q psy10471 137 CS-------PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLE--DALMDRDLVHRQTACA 204 (318)
Q Consensus 137 ~~-------p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg-~~~~~yl~~iiP~l~--~~l~~~~~~~R~~a~~ 204 (318)
|. .+ .++|.+..+++..-.+..--+++-++.+.+.-. ....+.+.++.|.+. .+|..+ .++ -.+..
T Consensus 104 ~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~-gni-Palvr 181 (435)
T PF03378_consen 104 CEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERR-GNI-PALVR 181 (435)
T ss_dssp -GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGST-TTH-HHHHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccC-CCc-CcHHH
Confidence 21 12 788999999877666777888888898888765 344444445555555 344322 222 12222
Q ss_pred HHHHHhhhhcCC-CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhH
Q psy10471 205 TIKHMALGVYGF-GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264 (318)
Q Consensus 205 ~i~~la~~~~~~-~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~v 264 (318)
++.......... .....+..++......+.....+ ....+.+++|...+..+.+.||+
T Consensus 182 LL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl 240 (435)
T PF03378_consen 182 LLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL 240 (435)
T ss_dssp HHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH
T ss_pred HHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH
Confidence 222221211100 01122333444332222223222 34678999999999987755554
No 235
>KOG1837|consensus
Probab=73.44 E-value=21 Score=40.03 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=55.4
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp 104 (318)
.+++...++...+|.+++.|..|+.++-++.+.-|+... .++..|.+- +++.|.+.+|...+-+..-++-+.+|.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLa---EL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLA---ELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHH---HHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 444445555566888999999999999999998887542 255555544 555888888988888877777777774
No 236
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=73.37 E-value=8.4 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.391 Sum_probs=53.0
Q ss_pred CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
.+.||.+.++..+--.+.+-.+.||.-+++.|.-+-+..|+.+-...|..++...++++...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999999999999998732577888888777777663
No 237
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=73.34 E-value=13 Score=27.77 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=44.9
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy10471 30 LVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTF 95 (318)
Q Consensus 30 l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~l 95 (318)
++.-+...+ +..+..||+-.+.++.++.++.++.+ ..-|.+++..+-...++++.++=+.|..++
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i-~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENI-KSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH-HhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 333344443 44679999999999999999888776 567887777665556665555555555543
No 238
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=73.19 E-value=1.1e+02 Score=35.83 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF 74 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~ 74 (318)
+.....|+.+.||..|+.+|=++-..-|...++..|..++.
T Consensus 1352 Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~ 1392 (1780)
T PLN03076 1352 LSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFE 1392 (1780)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 44566788899999999999999887776666666665554
No 239
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=73.11 E-value=17 Score=27.15 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=51.1
Q ss_pred cchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10471 141 TVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIK 207 (318)
Q Consensus 141 ~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~ 207 (318)
.++-++...+ +.++.++|..+++++.++..+-|...+.=.+.+.-.+..+..+.+..+-..|.+.+.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4555677775 446789999999999999998887776667778888888888777776666666553
No 240
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=73.08 E-value=35 Score=40.40 Aligned_cols=182 Identities=11% Similarity=0.130 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHHHhhh-
Q psy10471 7 LGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQ-QKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKA- 82 (318)
Q Consensus 7 ~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~-~~~~i~~~~~~~il~~Ll~~L~d- 82 (318)
..+..+|++..++|+ .+.+|....++.....++++. +..|.++..++++++.. .+++. ++..-......+.+-
T Consensus 457 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l---~~~~~~~~p~~I~~~~ 533 (2105)
T COG5032 457 YRVENLGELKDILGLDRITDYQALSLRLIIVSIQLRSFVFKREAINQIFKQLASIVIKPFL---DYPKRLDLPIKIVTVV 533 (2105)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHhhhHhHHHHHHhhccchhhHHHHHHHHHHHhhhhhhh---hhHHHhCcceeEEEee
Confidence 567889999999996 688898888888888888854 77899999999999971 11111 111111111233333
Q ss_pred chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccch---hhHHHHHHHHHHH-----HhhcCcccchHHHHHHhcCCc
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER---QNRVCTTVAIAIV-----AETCSPFTVLPALMNEYRVPE 154 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~---~~R~~~~~ai~~i-----~~~~~p~~vip~L~~~~~d~~ 154 (318)
....+|+.+.++.|.++. +.|+ ............. .....+ ...... .+..+.....|.++..++++.
T Consensus 534 ~~~~~~~~~~~~~~v~~~-i~~~--~~~~~~~~s~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 609 (2105)
T COG5032 534 YVALLRRPTEKLSGVLGS-IDKY--SHIESEEMSSSDFPWTKNPVGL-QLLAVYGFIRSIDDLYFTVSDPTLIEILKLPV 609 (2105)
T ss_pred cchhhhHHHHHHHHHHHH-hhHH--HHHHHhcccccCChhHhcchhh-HHHHHhccccccchhhhhhhhHHHHHHhhhHH
Confidence 233358888999888885 6663 2222222111111 111111 111111 122334466778889888876
Q ss_pred chHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCH
Q psy10471 155 LNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 196 (318)
Q Consensus 155 ~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~ 196 (318)
..+. .++.++++.++..++..+.+|.... |.+..+......
T Consensus 610 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~i~~n~~~ 651 (2105)
T COG5032 610 LSIVHSAIIEAIMLIKLSLGSESSQFEDLN-PSFLYIFSNNSI 651 (2105)
T ss_pred hhcccCchHHHHHHHHHHHHhhhccccccC-chHHHHHHhccH
Confidence 5554 3358999999999999999998777 888888876654
No 241
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=73.02 E-value=73 Score=31.90 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh
Q psy10471 194 RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP 257 (318)
Q Consensus 194 ~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~ 257 (318)
.+...|..+-.++|.++......-.++ ..++..+...+.++.+++|.+|-+++..++.++..
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d--~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKD--LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccccccc--HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 357999999999999998886443233 34555557777778999999999999999999864
No 242
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.80 E-value=5.4 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 74 FELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 74 ~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
..|++++++++..+++.|+++++.++
T Consensus 15 ~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 15 PALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 34556667778889999999999876
No 243
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=72.49 E-value=34 Score=27.27 Aligned_cols=32 Identities=34% Similarity=0.362 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcc
Q psy10471 86 AIRRATVNTFGYIAKAIGPH---DVLATLLNNLKV 117 (318)
Q Consensus 86 ~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~ 117 (318)
-||.....++..++...-|. +.++.+++.++.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~ 37 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS 37 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc
Confidence 36666666777777666554 456666666554
No 244
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=72.26 E-value=5.6 Score=23.03 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcc
Q psy10471 86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKV 117 (318)
Q Consensus 86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~ 117 (318)
.+|++|.+++|.++. ...++.|...|++
T Consensus 2 ~vR~~aa~aLg~~~~----~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD----EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC----HhHHHHHHHHhcC
Confidence 589999999998743 4456666666654
No 245
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=1.4e+02 Score=31.58 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHH--HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHH
Q psy10471 41 EQQKVQENCIDLVGRIADRGPEYVS-AREWMR--ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLN 113 (318)
Q Consensus 41 ~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~--il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~ 113 (318)
.+++..+.|+..++.+.+-. ...+ ....|. ++..++..++++---.|.-|+..+..+....... ++...-++
T Consensus 428 dnarq~egalr~lasi~s~i-tk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~n 506 (970)
T COG5656 428 DNARQAEGALRLLASIKSFI-TKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHN 506 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 35777788899888887611 1111 111111 2234555667766667888888888886554432 34555677
Q ss_pred hhcccchhhHHHHHHHHHH-HH-hhcCc--ccchHHHHHHh----cCCcchHHHHHHHHHHHHHHHHccccccchhhhHH
Q psy10471 114 NLKVQERQNRVCTTVAIAI-VA-ETCSP--FTVLPALMNEY----RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP 185 (318)
Q Consensus 114 ~Lk~~~~~~R~~~~~ai~~-i~-~~~~p--~~vip~L~~~~----~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP 185 (318)
++++.++.++...+.|+.. +. +...+ ..-+|..|+.+ ++-+.+.-..+.+ .+.+.......||-+++..
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe---~fVe~fseELspfa~eLa~ 583 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVME---SFVEYFSEELSPFAPELAG 583 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHH---HHHHHhHHhhchhHHHHHH
Confidence 8888777899999999863 33 43433 25556555533 3334444444444 4444445555667666555
Q ss_pred HHHH
Q psy10471 186 LLED 189 (318)
Q Consensus 186 ~l~~ 189 (318)
.+.+
T Consensus 584 ~Lv~ 587 (970)
T COG5656 584 SLVR 587 (970)
T ss_pred HHHH
Confidence 4444
No 246
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=71.42 E-value=65 Score=27.59 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 103 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig 103 (318)
++.+++.+-+++..||.+|+..++.+.+.|- +.|.+-.|.+. .+..|+++.+|..|...+..+.++-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGL--vnP~~cvp~lI---AL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGL--VNPKQCVPTLI---ALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC--CChHHHHhHhh---hhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3444556667889999999999999988442 23677777766 44488999999999988888776443
No 247
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.69 E-value=54 Score=26.37 Aligned_cols=78 Identities=5% Similarity=-0.063 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH-HHHHhhhhccc---CCChHHHHHHHHHHHHHHHHcC
Q psy10471 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT-HLLNYVWPNIF---ETSPHLVQAFMDAVEGLRVALG 256 (318)
Q Consensus 181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~-hll~~l~~~i~---d~~~~vr~~ii~~i~~i~~alG 256 (318)
...+-.+.+-++++++.+...+..++..++.+|+..-...... .+++.+...+. ..+++|+..+++.+..-+.+++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4566778888889999999999999999999884211111111 22333222222 2577899999999999999887
Q ss_pred hh
Q psy10471 257 PV 258 (318)
Q Consensus 257 ~~ 258 (318)
.+
T Consensus 116 ~~ 117 (133)
T cd03561 116 GH 117 (133)
T ss_pred CC
Confidence 64
No 248
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.50 E-value=57 Score=28.02 Aligned_cols=28 Identities=7% Similarity=0.097 Sum_probs=18.8
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGR 55 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~ 55 (318)
.+.......+.++..-..|..|+..++.
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~ 77 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDK 77 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHH
Confidence 4555555666677777777777777765
No 249
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=70.37 E-value=86 Score=28.56 Aligned_cols=211 Identities=14% Similarity=0.167 Sum_probs=110.6
Q ss_pred hhhhHHHHHHHHHHHhccC--cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 4 DKNLGIKIVQQIAILMGCA--ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~--~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
.|..|+.+++++..-...+ -...++.++..+...+.| ++.+..+ +.++..+..... .+......++..+.+...
T Consensus 15 ~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~--~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 15 IRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKN--FSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcC--CChhhHHHHHHHHHHhCC
Confidence 4666777777766654432 344567778888888855 5556666 888888884322 223344455554544333
Q ss_pred h--chHHHHHHHHHHHHHHHhh-------hCHHHHHHHHHHhhcccchhhHHHHHHHHH---HH-------------Hhh
Q psy10471 82 A--HKKAIRRATVNTFGYIAKA-------IGPHDVLATLLNNLKVQERQNRVCTTVAIA---IV-------------AET 136 (318)
Q Consensus 82 d--~~~~vR~~av~~lg~la~~-------igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~---~i-------------~~~ 136 (318)
. ...+.|..+.+.+-.+.+. +|+ +.+..++.... .++.-|... .++. .+ ++.
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~-~fv~~~i~~~~-gEkDPRnLl-~~F~l~~~i~~~~~~~~~~e~lFd~ 167 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHREALQSMGD-DFVYGFIQLID-GEKDPRNLL-LSFKLLKVILQEFDISEFAEDLFDV 167 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchh-HHHHHHHHHhc-cCCCHHHHH-HHHHHHHHHHHhcccchhHHHHHHH
Confidence 2 3445788877777665543 232 23444444332 222222221 1111 11 111
Q ss_pred ---cCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 137 ---CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 137 ---~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
|+|-+.-|+- .||..=.+...-.++..++.+. ..|-+..+|.+.+-+....+.+|.-+.+++..-++.-
T Consensus 168 ~~cYFPI~F~pp~----~dp~~IT~edLk~~L~~cl~s~----~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 168 FSCYFPITFRPPP----NDPYGITREDLKRALRNCLSST----PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred hhheeeeeeeCCC----CCCCCCCHHHHHHHHHHHhcCc----HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 1122222211 1221112344445555555432 2345778899999998888888887777776554433
Q ss_pred cCCCchhHHHHHHHhhhhcc
Q psy10471 214 YGFGCEDALTHLLNYVWPNI 233 (318)
Q Consensus 214 ~~~~~~~~i~hll~~l~~~i 233 (318)
|.+....|.... |..+
T Consensus 240 ---~~~~~~~~~~~i-w~~l 255 (262)
T PF14500_consen 240 ---GADSLSPHWSTI-WNAL 255 (262)
T ss_pred ---CHHHHHHHHHHH-HHHH
Confidence 444455554444 4544
No 250
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=70.06 E-value=1.4e+02 Score=33.16 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=28.8
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIA 57 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la 57 (318)
..++|...++|.|+..+..+|.++..+||.+-
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~n 224 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSIN 224 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCCC
Confidence 56789999999999999999999999999744
No 251
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=69.33 E-value=62 Score=27.41 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=62.4
Q ss_pred HHHHHHhhcCC-CCHHHHHH-HHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh-hCHHH
Q psy10471 30 LVEIIEHGLVD-EQQKVQEN-CIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA-IGPHD 106 (318)
Q Consensus 30 l~~~l~~~l~d-~~~~vR~a-a~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~-igp~~ 106 (318)
....+.+.++. +++.+-.. |...+|..-.. .+++ +.+. +-.++++.++||+++.++...... ..+..
T Consensus 72 ~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~------~~~~-~~~~---~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~ 141 (197)
T cd06561 72 DLERFEPWIEYIDNWDLVDSLCANLLGKLLYA------EPEL-DLLE---EWAKSENEWVRRAAIVLLLRLIKKETDFDL 141 (197)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhc------Ccch-HHHH---HHHhCCcHHHHHHHHHHHHHHHHhcccHHH
Confidence 44445555544 34665443 33334443321 1222 3433 444778888888888887665554 45556
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHH
Q psy10471 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148 (318)
Q Consensus 107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~ 148 (318)
++..+-..+.++++-+|.++.-++..++.. .|..++..+.+
T Consensus 142 ~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~~ 182 (197)
T cd06561 142 LLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLEK 182 (197)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 666666666667777777887777766655 44455555444
No 252
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=69.32 E-value=11 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhcccch--hhHHHHHHHHHHHHh
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQER--QNRVCTTVAIAIVAE 135 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~~~--~~R~~~~~ai~~i~~ 135 (318)
++..+|..|-+.++.+.+..+.. .+..++.+.+.++++ ..++.....+..++.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 44569999999999999988742 466667777776655 456666666555443
No 253
>KOG1517|consensus
Probab=69.21 E-value=1.8e+02 Score=31.93 Aligned_cols=204 Identities=19% Similarity=0.192 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---HHHHH-----HHHhh
Q psy10471 44 KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLAT-----LLNNL 115 (318)
Q Consensus 44 ~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---~~l~~-----Ll~~L 115 (318)
-.|--|+..||++-+-++--++..-=..|+.=+|++|+++-...|-.-+---+.|.+ ++|. +++.. .+..|
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA-vD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILA-VDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHh-cCchhHHHHHhccCceeEEEEe
Confidence 347778999999988776444322223355556677788777777543333344442 5554 22111 12222
Q ss_pred cccch---hhHHHHHHHHHHHHh-------hcCcccchHHHHHHhcC-CcchHHHHHHHHHHHHHHHHccc----cccch
Q psy10471 116 KVQER---QNRVCTTVAIAIVAE-------TCSPFTVLPALMNEYRV-PELNVQNGVLKALSFLFEYIGEM----GKDYI 180 (318)
Q Consensus 116 k~~~~---~~R~~~~~ai~~i~~-------~~~p~~vip~L~~~~~d-~~~~v~~~vl~al~~i~~~lg~~----~~~yl 180 (318)
...+. .+|.|++=.++.|.. .|-.-.+|..=+..+.| +++-.+.=++=+++.+++..... ...--
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 22122 578888877776653 34334556655566666 35666777888888888754331 11111
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc--------------------hhHHHHHHHhhhhcccCCChHH
Q psy10471 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC--------------------EDALTHLLNYVWPNIFETSPHL 240 (318)
Q Consensus 181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~--------------------~~~i~hll~~l~~~i~d~~~~v 240 (318)
+ ..+...++|..+.||.++.-+++++..+... .+ |+.+.|-+--+++-+.|.++=+
T Consensus 644 h---ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d-~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplv 719 (1387)
T KOG1517|consen 644 H---EKLILLLSDPVPEVRAAAVFALGTFLSNGSD-NFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLV 719 (1387)
T ss_pred H---HHHHHHhcCccHHHHHHHHHHHHHHhccccc-ccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHH
Confidence 2 3345556788899999999999998776421 11 1222221223345566677777
Q ss_pred HHHHHHHHHHHH
Q psy10471 241 VQAFMDAVEGLR 252 (318)
Q Consensus 241 r~~ii~~i~~i~ 252 (318)
|..+.-++...+
T Consensus 720 r~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 720 RTEVVVALSHFV 731 (1387)
T ss_pred HHHHHHHHHHHH
Confidence 776666665543
No 254
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.91 E-value=48 Score=27.17 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=56.7
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHh
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~ 100 (318)
.-.+.+..+...+++.+|.|+.-|+..|-.+..++|..+. -++|+..+. +++++ ....||.-++..+..-+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~---~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELK---DLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH---HHHcccCCHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999985321 356666555 44454 566788888888877776
Q ss_pred hhC
Q psy10471 101 AIG 103 (318)
Q Consensus 101 ~ig 103 (318)
...
T Consensus 115 ~f~ 117 (142)
T cd03569 115 AFR 117 (142)
T ss_pred HhC
Confidence 654
No 255
>KOG2021|consensus
Probab=68.89 E-value=1.6e+02 Score=31.13 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471 161 VLKALSFLFEYIGEMGKDYIYAVTPLLEDAL 191 (318)
Q Consensus 161 vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l 191 (318)
.+..+...|+ ..+-+.++++.|.+...+
T Consensus 758 flsQLihkfk---~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 758 FLSQLIHKFK---TDCYQILNQMLPPLLNRI 785 (980)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4444445554 566677777777666554
No 256
>KOG1293|consensus
Probab=68.41 E-value=1.5e+02 Score=30.60 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=53.3
Q ss_pred CChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMR--ICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 25 P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~--il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
|--..++..+++.+.|+..+|..+++-+|-++.-..+++- ..+.+ .+..+..++++..+.+|.-++|.+-.+.
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k--skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK--SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH--HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5666777778888899999999999888887775444321 22222 4455778888888889999999887765
No 257
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.19 E-value=21 Score=28.58 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=44.1
Q ss_pred cchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccccccchh--hhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy10471 141 TVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGEMGKDYIY--AVTPLLEDALMDRDLVHRQTACATIKHMA 210 (318)
Q Consensus 141 ~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~~~~~yl~--~iiP~l~~~l~~~~~~~R~~a~~~i~~la 210 (318)
.++-.|.+.+..+ ++.+...+|.-|+.+++.. +..+..+. ..-..+..++.+.|+.+|..|..++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4455556655333 3455566777778777765 23344442 24567778889999999999999987663
No 258
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=68.05 E-value=49 Score=25.98 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=49.4
Q ss_pred ChHhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 26 HLKNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 26 ~l~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
+++.++|.+...++ ...+..|-+|..-+++++...+=. .+-+..++..+++.... ....+.++-++..+.+.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~--~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQ--ETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHcc
Confidence 57788999999998 667999999999999999976621 23333344434422222 222466777888777654
No 259
>KOG0946|consensus
Probab=68.04 E-value=81 Score=33.33 Aligned_cols=34 Identities=3% Similarity=0.066 Sum_probs=20.5
Q ss_pred ChHhHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhh
Q psy10471 26 HLKNLVEIIEHGLVDEQ-QKVQENCIDLVGRIADR 59 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~ 59 (318)
...+-++.+-+-+.+.+ +.=|++|+..|-.++..
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk 53 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK 53 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Confidence 34455555555444444 55588888777777753
No 260
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=67.80 E-value=18 Score=31.28 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHHHHHhhcCC-CCHHHHH-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 30 LVEIIEHGLVD-EQQKVQE-NCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 30 l~~~l~~~l~d-~~~~vR~-aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
..+.+...+.+ +++.+-. .|-+.+|.+.... ++..+.+. +-.++++.++||+++.++...........+
T Consensus 86 ~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~---~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~ 156 (213)
T PF08713_consen 86 DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEALELLE---KWAKSDNEWVRRAAIVMLLRYIRKEDFDEL 156 (213)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHHHHHH---HHHHCSSHHHHHHHHHCTTTHGGGCHHHHH
T ss_pred HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 45555555544 4565543 3355566654321 33444444 444778888888888877665555333345
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHH
Q psy10471 108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148 (318)
Q Consensus 108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~ 148 (318)
+..+-..+.++++-+|.++.-++..++.. .|-.+.+.+..
T Consensus 157 l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l~~ 196 (213)
T PF08713_consen 157 LEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 55555666777766777776666555543 23344444443
No 261
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=67.19 E-value=32 Score=32.60 Aligned_cols=88 Identities=15% Similarity=0.289 Sum_probs=58.4
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP------EYVSAREWMRICFELLELLKAHKKAIRRATVNTFG 96 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~------~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg 96 (318)
+..+-+.....+..++..++--.|+.+++.||++-..-. -|++-++.+.++. .+|+|+.+.+|.+|.+.|-
T Consensus 203 l~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M---~lL~d~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 203 LSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMM---NLLRDKSKNIQFEAFHVFK 279 (335)
T ss_dssp HHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHH---HHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHH---HHhcCcchhhhHHHHHHHH
Confidence 344556777778888888888889999999999884322 3555566777755 6669999999999999996
Q ss_pred HHHhh-hCHHHHHHHHHH
Q psy10471 97 YIAKA-IGPHDVLATLLN 113 (318)
Q Consensus 97 ~la~~-igp~~~l~~Ll~ 113 (318)
...+. -.|..+...|.+
T Consensus 280 vFVANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 280 VFVANPNKPPPIVDILIK 297 (335)
T ss_dssp HHHH-SS-BHHHHHHHHH
T ss_pred HHHhCCCCChHHHHHHHH
Confidence 65542 223345444444
No 262
>KOG1058|consensus
Probab=66.52 E-value=1.8e+02 Score=30.78 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENC 49 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa 49 (318)
|+.|+-||..+=.. +..+.|-.++++..++. ++++|.-.|.|
T Consensus 151 RrNAilaifsIyk~-~~~L~pDapeLi~~fL~--~e~DpsCkRNA 192 (948)
T KOG1058|consen 151 RRNAILAIFSIYKN-FEHLIPDAPELIESFLL--TEQDPSCKRNA 192 (948)
T ss_pred hhhhheeehhHHhh-hhhhcCChHHHHHHHHH--hccCchhHHHH
Confidence 44556666666654 56789999999888775 45555554444
No 263
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.09 E-value=60 Score=25.15 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC
Q psy10471 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV 64 (318)
Q Consensus 10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i 64 (318)
..+.+++...... .-..++++..+...+++.+|.+..-|+..|=.+..++|+.+
T Consensus 19 ~~i~~i~d~~~~~-~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 19 PLIMEICDLINET-NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHHCC-CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 3455555544333 45678899999999999999999999999999999998643
No 264
>KOG2005|consensus
Probab=64.98 E-value=64 Score=33.45 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=48.6
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHcccc------ccchhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhc
Q psy10471 146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMG------KDYIYAVTPLLEDALMD-RDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~------~~yl~~iiP~l~~~l~~-~~~~~R~~a~~~i~~la~~~~ 214 (318)
+....+||+++++++.++.+-...++....+ -.|+..=-+.+..+... .+++.++++++.++-++....
T Consensus 53 lVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt~s 128 (878)
T KOG2005|consen 53 LVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMTMS 128 (878)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHheeec
Confidence 7778899999999999999988887754421 12443333445555543 347889999999988876653
No 265
>KOG4524|consensus
Probab=64.82 E-value=35 Score=36.58 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=43.8
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc-cccchhhhHHHHHHHHhcC
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM-GKDYIYAVTPLLEDALMDR 194 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~-~~~yl~~iiP~l~~~l~~~ 194 (318)
+..|.++..+++.++-+-..+++++.++.+.-|+- -+.++..++|.+.+.+.+.
T Consensus 847 q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 847 QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999998888888888999999999988873 4466788999999877544
No 266
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=63.77 E-value=10 Score=37.25 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=47.9
Q ss_pred hHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 29 NLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 29 ~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
+++..+..+|.. .+|.+-..||.=||+++..-|.--..-+=...=..++++++++++.||.+|+.+++.+.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 566777777743 45888899999999999875431111011111112456678889999999999998763
No 267
>KOG3961|consensus
Probab=63.45 E-value=25 Score=31.15 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP 61 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~ 61 (318)
.|-.=+-+|-..+|+.+.|-+++|+.-+...|...+-.|-..++++|.++....+
T Consensus 133 ~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~ 187 (262)
T KOG3961|consen 133 VARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG 187 (262)
T ss_pred hhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence 3444456677778899999999999999999999999999999999999987666
No 268
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=62.02 E-value=84 Score=32.20 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=67.3
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHcc--ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471 150 YRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLN 227 (318)
Q Consensus 150 ~~d~~~~v~~~vl~al~~i~~~lg~--~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~ 227 (318)
+.|.+..+|..+.+.+.+++..... ....++..+.-.+..+.......+|..+.++++.+..-.-..+ +.+..+
T Consensus 323 LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~--SeIlIv-- 398 (740)
T COG5537 323 LSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLSS--SEILIV-- 398 (740)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccch--hHHHHH--
Confidence 3456677888899999988876422 2334455555555666654444499999999888743322122 222222
Q ss_pred hhhhcccCCChHHHHHHHHHHHHHHHHcCh------hhHH--HhHHHHhcc
Q psy10471 228 YVWPNIFETSPHLVQAFMDAVEGLRVALGP------VRIL--QYVLQGLFH 270 (318)
Q Consensus 228 ~l~~~i~d~~~~vr~~ii~~i~~i~~alG~------~~~~--~~vl~~l~~ 270 (318)
..+++|..|+=|.+.-+.++.+|++... +.+. .++++.+-.
T Consensus 399 --sscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~n~lL~a~~q 447 (740)
T COG5537 399 --SSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKTNRLLEAMKQ 447 (740)
T ss_pred --HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHh
Confidence 3446666666566666666666665543 1222 666666643
No 269
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=61.67 E-value=33 Score=29.40 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=13.6
Q ss_pred HHhhhchHHHHHHHHHHHHHHHh
Q psy10471 78 ELLKAHKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 78 ~~L~d~~~~vR~~av~~lg~la~ 100 (318)
+...+++..+|..|++.++.+.+
T Consensus 15 ~~~~~~~~~vr~~Al~~l~~il~ 37 (187)
T PF12830_consen 15 ELCLSSDDSVRLAALQVLELILR 37 (187)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHh
Confidence 33345556667666666666554
No 270
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=61.35 E-value=73 Score=33.27 Aligned_cols=213 Identities=19% Similarity=0.176 Sum_probs=101.2
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-----HHHhhh------chHHHHHHHHHHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFEL-----LELLKA------HKKAIRRATVNTF 95 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~L-----l~~L~d------~~~~vR~~av~~l 95 (318)
++.++..+..-+.+....+|..+++.++.+++..+... ++.+..+..-. +..|+. .+..+-.-++--+
T Consensus 244 l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l-~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 244 LEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNL-AESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhccccc-HHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 33444444444444568899999999999999877543 44444433321 222333 2222333344444
Q ss_pred HHHHhhhCHHHHHHHHHH--hhcccchhhHHHHHH---HHH--HH-----HhhcCcccchH--------HHHH-HhcCCc
Q psy10471 96 GYIAKAIGPHDVLATLLN--NLKVQERQNRVCTTV---AIA--IV-----AETCSPFTVLP--------ALMN-EYRVPE 154 (318)
Q Consensus 96 g~la~~igp~~~l~~Ll~--~Lk~~~~~~R~~~~~---ai~--~i-----~~~~~p~~vip--------~L~~-~~~d~~ 154 (318)
| +++ +||-++.+.++. ..|.-.++.|..+.. .|- .. .-.|+...+.| -+++ .+=|||
T Consensus 323 a-la~-~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe 400 (993)
T COG5234 323 A-LAG-AGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE 400 (993)
T ss_pred H-Hhh-ccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence 4 443 666555553332 223333333222211 110 00 01232223333 3455 667999
Q ss_pred chHHHHHHHHHHHHHHHHccccc-cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGK-DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI 233 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~-~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i 233 (318)
.++|.++.. .+++.+|-.+. +.-...+..+...-- +.+-.....+...++..-+...++++++.+ ++.++
T Consensus 401 l~vRr~a~A---al~E~iGR~~s~a~g~~lIslIN~~sv---~r~s~csg~~~r~~~~~~k~~~CedVF~di---Ll~Nl 471 (993)
T COG5234 401 LNVRRAATA---ALFEVIGRHASIADGLSLISLINYVSV---TRISNCSGDLCRKVAHFPKFRSCEDVFQDI---LLTNL 471 (993)
T ss_pred hhhhhHHHH---HHHHHhccCCCcccchhhhhhccceec---chhhhcchHHHHHhcCccccchHHHHHHHH---HHhhh
Confidence 999987655 45667776322 222334444421110 111112222222232322333556666664 45666
Q ss_pred cCCChHHHHHHHHHHHHH
Q psy10471 234 FETSPHLVQAFMDAVEGL 251 (318)
Q Consensus 234 ~d~~~~vr~~ii~~i~~i 251 (318)
++-++++++..-.++..+
T Consensus 472 ~H~~~~~k~~~~y~l~~l 489 (993)
T COG5234 472 QHWDVKVKQLSAYSLRQL 489 (993)
T ss_pred hccchhhhhhccccHHHH
Confidence 666666666555555444
No 271
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=58.58 E-value=1.6e+02 Score=27.55 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=59.4
Q ss_pred ChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh----
Q psy10471 26 HLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK---- 100 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~---- 100 (318)
-...++..+.|.+.. .|.....+.+.+++.=+...+..+ ++.....+. +-+++.+..+|+.-+..+|....
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-~~~~~~~~~---kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-PKKVVDAFK---KGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-CHHHHHHHH---HHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 456677778887754 789999999999998777654333 455555544 55688777799999999988764
Q ss_pred -hhCH--HHHHHHHHHhhc
Q psy10471 101 -AIGP--HDVLATLLNNLK 116 (318)
Q Consensus 101 -~igp--~~~l~~Ll~~Lk 116 (318)
...+ ..+++.|+..++
T Consensus 95 ~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 1111 245666666665
No 272
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.31 E-value=1e+02 Score=25.22 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH-HHHHHhhhhccc------CCChHHHHHHHHHHHHHHHH
Q psy10471 182 AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL-THLLNYVWPNIF------ETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i-~hll~~l~~~i~------d~~~~vr~~ii~~i~~i~~a 254 (318)
.-+-.+.+-+.++++.+...+..++..++.+|+..-+.+.. ..+++-+...+. ..+++|+..+++.+..-+.+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566777788999999999999999999888421111111 123333222221 25789999999999999888
Q ss_pred cC
Q psy10471 255 LG 256 (318)
Q Consensus 255 lG 256 (318)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 75
No 273
>KOG0889|consensus
Probab=57.81 E-value=4.7e+02 Score=32.76 Aligned_cols=229 Identities=13% Similarity=0.171 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKA 82 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d 82 (318)
|-+++++|..++. -+.++||..+++..+...+..+|...---|++.++.+-...++.++ ...+..++..+-..+..
T Consensus 75 R~~~Leil~r~~~--~e~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~~~~~ 152 (3550)
T KOG0889|consen 75 RNLVLEILNRLPH--NEVFKPFSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVIDLYKNMPN 152 (3550)
T ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhh
Confidence 5577778877776 4469999999999999999999988889999999999886665443 24444444433321111
Q ss_pred ------chHH-HH----HHHHHHH--HHHHhhhCHHHHHHHHH-Hhhcccc-h--------h-hHHHH---HHHHHH---
Q psy10471 83 ------HKKA-IR----RATVNTF--GYIAKAIGPHDVLATLL-NNLKVQE-R--------Q-NRVCT---TVAIAI--- 132 (318)
Q Consensus 83 ------~~~~-vR----~~av~~l--g~la~~igp~~~l~~Ll-~~Lk~~~-~--------~-~R~~~---~~ai~~--- 132 (318)
.++. .- ..+-.+. +.....+|+....+.-- ..+|.-. . | .+..+ +-.+.-
T Consensus 153 ~v~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~~~~s~kvl~e~p~iv~~~~q~yk~~i~~~i~~~~pL~~ 232 (3550)
T KOG0889|consen 153 LVNEGFIEPKSTEEEPLNHPESADSSLTEYHKIGVEQLLPSTYPQSFKVLAECPIIVVLLYQLYKQLIQTGIPELLPLIL 232 (3550)
T ss_pred hcccccCCCCcCcCCCCCchhhhhhhcCcccccCccccCcccccceeeeheeccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 0000 00 0000111 00101122110000000 0111000 0 0 01111 000110
Q ss_pred --HHhhc--Ccc--cchHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC---------
Q psy10471 133 --VAETC--SPF--TVLPALMNEYRVPEL---NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--------- 194 (318)
Q Consensus 133 --i~~~~--~p~--~vip~L~~~~~d~~~---~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~--------- 194 (318)
++-.. +|+ .+..+.++.+.+|.. ..|+.++-|..+++.+ +|-..++|.+..++-.+
T Consensus 233 ~~l~v~~~d~~~~~~~~~~~~~ll~~CP~el~~~RkElL~a~rhilst------~~k~~f~P~id~L~de~iLiG~G~t~ 306 (3550)
T KOG0889|consen 233 NFLSVRVPDSPYWMFLSDGTLQLLYDCPSELLSLRKELLVATRHILST------DLKRGFLPMIDKLLDERILIGTGFTA 306 (3550)
T ss_pred HHhCCCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhH------hHHhhhhhhhHHHhccceeecCCcch
Confidence 11000 133 333556777777643 4578899999998864 34456666666666322
Q ss_pred CHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHH
Q psy10471 195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLV 241 (318)
Q Consensus 195 ~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr 241 (318)
-.+.|-.|.++++.+...++..=..+.+.|.....-.++.|++..+.
T Consensus 307 ~e~lRplays~LAdllHhvR~~L~~~~i~~~i~l~s~~l~D~~l~~~ 353 (3550)
T KOG0889|consen 307 QESLRPLAYSMLADLLHHVRESLSLTQIIKVISLFSRNLHDSSLSSG 353 (3550)
T ss_pred hhhccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCcchHHH
Confidence 14678777788777777776443455666766666778888765443
No 274
>KOG2759|consensus
Probab=57.69 E-value=1.9e+02 Score=28.25 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=43.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHH
Q psy10471 33 IIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 33 ~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~ 105 (318)
-+++++.++++..-.-+.+-++.++.++...+.-.++.=-..-|-+.++. .+..-+-.|++++..+.. .++|
T Consensus 118 ~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~ey 190 (442)
T KOG2759|consen 118 SFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEY 190 (442)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccch
Confidence 36677778788777778889999998887666422222221222233344 445566667777766653 5554
No 275
>KOG1848|consensus
Probab=55.70 E-value=3.6e+02 Score=30.69 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=119.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHhhhC---HH----
Q psy10471 37 GLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA----HKKAIRRATVNTFGYIAKAIG---PH---- 105 (318)
Q Consensus 37 ~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d----~~~~vR~~av~~lg~la~~ig---p~---- 105 (318)
....++-.||...+.++=.+-+..|+.. ...|..++.. ++-+-| ..+++=+.+..+|--+....= |.
T Consensus 850 ~~s~~~~evr~~sl~~l~silet~ge~l-l~~w~sV~em-l~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 850 DNSSRGVEVRISSLEALVSILETVGEHL-LHGWQSVFEM-LRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred HhcCccceeeHHHHHHHHHHHhccchhh-ccccHHHHHH-HHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 3445677789999999999999988766 4446666542 222222 233444445555544443322 33
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHH-HHH-----------h-hc--------C---cc-c---------chHHHHHHhc
Q psy10471 106 DVLATLLNNLKVQERQNRVCTTVAIA-IVA-----------E-TC--------S---PF-T---------VLPALMNEYR 151 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~-~i~-----------~-~~--------~---p~-~---------vip~L~~~~~ 151 (318)
.+++++++.-+...-.+=..++..+- .++ + .| + |. . ++..|.+...
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 34444444332111111111222110 111 1 11 0 11 2 2333455556
Q ss_pred CCcchHHHHHHHHHHHHHHHHcccccc------chhhhHHHHHH-------HHhcCC--HHHHHHHHHHHHHHhhhhc--
Q psy10471 152 VPELNVQNGVLKALSFLFEYIGEMGKD------YIYAVTPLLED-------ALMDRD--LVHRQTACATIKHMALGVY-- 214 (318)
Q Consensus 152 d~~~~v~~~vl~al~~i~~~lg~~~~~------yl~~iiP~l~~-------~l~~~~--~~~R~~a~~~i~~la~~~~-- 214 (318)
|.-.+||+++++.+=.++.+.|.++.+ ...-|+|.+-. =|+... ...-++..-.++.++..-.
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 667899999999999999999987766 22446777762 221111 1223444555555544322
Q ss_pred ------CCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 215 ------GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 215 ------~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
..|+.+.-..++.|+--.+++.++++..+++.++..+....
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 22555666667777777778889999888888777665543
No 276
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.59 E-value=1.1e+02 Score=24.94 Aligned_cols=74 Identities=9% Similarity=0.153 Sum_probs=54.7
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh------chHHHHHHHHHHHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA------HKKAIRRATVNTFG 96 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d------~~~~vR~~av~~lg 96 (318)
-.+-+..+...+++.+|.|..-|+..|-.+..++|+.+. -++++.. |+++++. ....||.-.+..+-
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~e---l~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNE---LIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHH---HHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 357788888999999999999999999999999996442 2444444 4455542 35678888888887
Q ss_pred HHHhhhC
Q psy10471 97 YIAKAIG 103 (318)
Q Consensus 97 ~la~~ig 103 (318)
.-+..+.
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 7776654
No 277
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=55.45 E-value=70 Score=27.05 Aligned_cols=74 Identities=16% Similarity=-0.058 Sum_probs=50.1
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHhh-cCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhh
Q psy10471 110 TLLNNLKVQERQNRVCTTVAIAIVAET-CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 183 (318)
Q Consensus 110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~-~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~i 183 (318)
.+..-.++++.-.|++........... ..+-.++..+.+...|++..+|.++..++..+++.......+|+...
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 344444555555555555554433322 44456777777777889999999999999999998776777888643
No 278
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=55.14 E-value=99 Score=25.65 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhccc-chhhHHHHHHHHHHHH----hhcC----cccchHHHHHHhc
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQ-ERQNRVCTTVAIAIVA----ETCS----PFTVLPALMNEYR 151 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk~~-~~~~R~~~~~ai~~i~----~~~~----p~~vip~L~~~~~ 151 (318)
....+|..+.-.+.++-+.-+.. +.+...++.+-.+ +.........++..++ +.|. .-.+++.++....
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 34568888888877764322211 2333333333222 1122222222332221 1111 1256677776665
Q ss_pred --CCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHh-cCCHH-HHHHHHHHHH
Q psy10471 152 --VPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALM-DRDLV-HRQTACATIK 207 (318)
Q Consensus 152 --d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~-~~~~~-~R~~a~~~i~ 207 (318)
..+..++.++++++..-+ ....+..|+ ..-++++++..+ ..+.. +|-.++-.+.
T Consensus 97 ~~~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 556778899999888644 355677777 568899999996 44455 6766665554
No 279
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=54.14 E-value=2.3e+02 Score=27.94 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=37.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHHHhhhc-hHHHHHHHHHHHHHHH
Q psy10471 32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC-FELLELLKAH-KKAIRRATVNTFGYIA 99 (318)
Q Consensus 32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il-~~Ll~~L~d~-~~~vR~~av~~lg~la 99 (318)
..+++.|+.++..+...|+..+..++..+.... .....+.+ .-+.+.++.+ +..-+..|+.+++.+.
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~-~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL 172 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKM-EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL 172 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCcccc-chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh
Confidence 345556677778888889999998887655433 22222222 2333444442 2334445555555554
No 280
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=54.11 E-value=1.1e+02 Score=29.64 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHH---h--cCCcchHHHHHHHHHHHHHHHHcc----
Q psy10471 106 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNE---Y--RVPELNVQNGVLKALSFLFEYIGE---- 174 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~---~--~d~~~~v~~~vl~al~~i~~~lg~---- 174 (318)
..+..|+..+..+|.+.|-..-..+-.+..++... .+..++-+. + .+....--..+++-+++++.+...
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 46667777777776666655544443333322211 111111111 1 112222234455555555553221
Q ss_pred ccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 175 MGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 175 ~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
..+.++ .-++|+... ..-..+.+++...+......=. .-.+..+..++.+ ||. +++.-....++-++.+..
T Consensus 213 eh~~fl~~vllPLh~~---~~~~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~-WP~---t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKS---PHLSSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKH-WPK---TNSQKEVLFLNELEEILE 284 (409)
T ss_dssp HHHHHHHHTTGGGGGS---TGGGGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHH-S-S---S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHh-CCC---CCchhHHHHHHHHHHHHH
Confidence 122222 223333210 1112334444444433332210 1113456667777 898 777778889999999999
Q ss_pred HcChhhHHHhHHHHh
Q psy10471 254 ALGPVRILQYVLQGL 268 (318)
Q Consensus 254 alG~~~~~~~vl~~l 268 (318)
.+.++.|.+...|.+
T Consensus 285 ~~~~~~f~~i~~~lf 299 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLF 299 (409)
T ss_dssp T--HHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 999888877776666
No 281
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=54.11 E-value=54 Score=26.30 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=38.0
Q ss_pred HHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC
Q psy10471 11 IVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE 62 (318)
Q Consensus 11 ~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~ 62 (318)
...|||...-+. .--..+++..+...|+|.+|.|+.=|++.|-.++..+.+
T Consensus 21 ~~~Eia~~t~~s-~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~ 71 (122)
T cd03572 21 LYEEIAKLTRKS-VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS 71 (122)
T ss_pred HHHHHHHHHHcC-HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH
Confidence 455666643221 122568999999999999999999999999999987664
No 282
>KOG1525|consensus
Probab=51.89 E-value=4e+02 Score=30.13 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=53.6
Q ss_pred ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471 140 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~l 209 (318)
..|+|-|.+.+.....++|..+++.++.+|..-+..+..-.+.+--.|.+.+.|.+..+|-...+.....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~ 327 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQC 327 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHH
Confidence 3799999999999989999999999999997655433333344556667777799999998777766544
No 283
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=51.67 E-value=1.3e+02 Score=24.61 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=41.2
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc-cc--cccchh---hhHHHHHHHHhcCCH---HHHHHHHHHHHHH
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG-EM--GKDYIY---AVTPLLEDALMDRDL---VHRQTACATIKHM 209 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg-~~--~~~yl~---~iiP~l~~~l~~~~~---~~R~~a~~~i~~l 209 (318)
.+.+.++..+++++.+.|.-++..+..+++..- .. ..+|++ .-+|.+...+-..+. .-++++-..+..+
T Consensus 40 dL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~ 117 (139)
T PF12243_consen 40 DLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNW 117 (139)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHH
Confidence 456668888888888888888888888776642 22 455664 344555555543332 2333444444444
No 284
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=51.65 E-value=74 Score=24.59 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=42.1
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHHHH
Q psy10471 146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATI 206 (318)
Q Consensus 146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i 206 (318)
+.+.++.+.++.+-.++-.+..|++..|.....+.. .+.|.|.++....++.+|+-...++
T Consensus 42 i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 42 IEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444455555566677777788888887766555553 3578888888888888887665555
No 285
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=51.38 E-value=57 Score=27.76 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV 64 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i 64 (318)
|-++-+++-.+-. -|.-+=.+.+++..+...|+| +..+|.-|...|..++...+..+
T Consensus 44 RK~ayE~lytlLd--~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v 100 (169)
T PF08623_consen 44 RKAAYECLYTLLD--TCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEV 100 (169)
T ss_dssp HHHHHHHHHHHHH--STCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHHHH--HHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHH
Confidence 5567777777665 333333488899999999999 99999999999999998777433
No 286
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=50.91 E-value=1.4e+02 Score=32.86 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHHHHHHHcccc-ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMG-KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI 233 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~-~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i 233 (318)
..+|+--++.-++||+.+|.+. ..=.+..+|.+.-++.++.-.+|...++.+..=..-++ .|-...++.++.-++|++
T Consensus 77 aGVH~KTLEvY~yIFe~Ig~eTL~~e~n~w~~Gl~pf~~~~si~v~s~~i~li~~yiv~Lg-~~vr~~~~~i~isLLpg~ 155 (1618)
T COG5221 77 AGVHNKTLEVYSYIFERIGRETLLKEFNFWTLGLFPFSAHCSILVVSSFIDLIERYIVPLG-KDVRSYCTSILISLLPGM 155 (1618)
T ss_pred cchhhhhhhHHHHHHHHHhHHHHHhhhhhhhcchhhhhhhhhhHhHHHHHHHHHhheeecC-ccHHHHHHHHHHHhCCCc
Confidence 3678888899999999998741 11123344444555567778889999999987655553 566777888888889999
Q ss_pred cCCChHHHHHHHHHHHHHHHHcCh-hhHHHhHHHHhcccc
Q psy10471 234 FETSPHLVQAFMDAVEGLRVALGP-VRILQYVLQGLFHPA 272 (318)
Q Consensus 234 ~d~~~~vr~~ii~~i~~i~~alG~-~~~~~~vl~~l~~~a 272 (318)
-+++.+.-+-....|+.+-+.+.+ ++|-+.+|-.|+.+.
T Consensus 156 e~es~e~~~l~~hLi~tl~k~L~d~~~fw~~~w~ill~~~ 195 (1618)
T COG5221 156 EFESGEYYSLRAHLIITLFKSLIDPDVFWSSMWGILLNDE 195 (1618)
T ss_pred cccccchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCc
Confidence 988888888788888888898865 668888888887644
No 287
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.82 E-value=18 Score=34.08 Aligned_cols=70 Identities=7% Similarity=0.099 Sum_probs=47.9
Q ss_pred hHHHHHHhhcCCCCHH-HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471 29 NLVEIIEHGLVDEQQK-VQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 98 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~-vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~l 98 (318)
+++..+.++++..+|. --..||.-||++.+..|+-.+.-.=-..=..++++++.+++.||.+|++++..+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 4677778888776666 367889999999998886443100001112345667888999999999998554
No 288
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=50.07 E-value=64 Score=30.25 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=49.6
Q ss_pred CcCCChHhHHHHHHhh-----cCC-----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh--chHHHHH
Q psy10471 22 AILPHLKNLVEIIEHG-----LVD-----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA--HKKAIRR 89 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~-----l~d-----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d--~~~~vR~ 89 (318)
.+-||++++||-++-. |.+ ++-.+|..|+..++..+++.+..- ..--+++...+++..-| ...+..-
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Y-ktLkPRvtrTllKafLD~~k~~sT~Y 348 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSY-KTLKPRVTRTLLKAFLDREKTESTQY 348 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhh-hhhchHHHHHHHHHHHhcccccchhh
Confidence 4899999999987643 222 234579999999999998766321 11223344455544444 2334666
Q ss_pred HHHHHHHHHHhh
Q psy10471 90 ATVNTFGYIAKA 101 (318)
Q Consensus 90 ~av~~lg~la~~ 101 (318)
-|++++..+++.
T Consensus 349 Galkgls~l~ke 360 (450)
T COG5095 349 GALKGLSILSKE 360 (450)
T ss_pred hhhhhhhhhchh
Confidence 677777776653
No 289
>KOG2213|consensus
Probab=50.04 E-value=2.5e+02 Score=27.32 Aligned_cols=119 Identities=11% Similarity=0.159 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcCc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHH
Q psy10471 124 VCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201 (318)
Q Consensus 124 ~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~ 201 (318)
+..++-|...+..+.. ...+.+-+..+.|.+..+|..+++-+-.+++. +.++.+.|.+.++++ +..
T Consensus 42 ~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~qLLn------k~s 109 (460)
T KOG2213|consen 42 RLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLVQLLN------KAS 109 (460)
T ss_pred HHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC------chhhhhHHHHHHHHH------HHH
Confidence 3444444444333321 36778888888999999999999999999883 577888888888886 233
Q ss_pred HHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCCh-----HHHHHHHHHHHHHH-HHcChhh
Q psy10471 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSP-----HLVQAFMDAVEGLR-VALGPVR 259 (318)
Q Consensus 202 a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~-----~vr~~ii~~i~~i~-~alG~~~ 259 (318)
+..+.+++.. |.+....+.++++...+++.-+ ++-..|.+-+...- .+-|.++
T Consensus 110 l~~Lf~~~~~-----~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef 168 (460)
T KOG2213|consen 110 LTGLFGQIEV-----GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEF 168 (460)
T ss_pred HHHHHhhhhh-----hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHH
Confidence 3344433321 4444555666666666665433 33344444444333 3334444
No 290
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=49.70 E-value=2.2e+02 Score=26.57 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
...-+.++..+...++|..+.+|++-+..+|.+....+.........+++..|++.+++
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHH
Confidence 34447889999999999988899999999999886111111134444555556666655
No 291
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=49.55 E-value=2e+02 Score=25.93 Aligned_cols=139 Identities=19% Similarity=0.288 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhhCC-------CCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC----------H
Q psy10471 43 QKVQENCIDLVGRIADRGP-------EYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG----------P 104 (318)
Q Consensus 43 ~~vR~aa~~~LG~la~~~~-------~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig----------p 104 (318)
++.-+.+...+|.+++..+ ..++..++..+...++..|.. .+...=..+..+|..+++.+- |
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 4444556677888886432 334456666666666666666 444444557777888777665 5
Q ss_pred HHHHHHHHHhhccc--ch--hhHHHHHHHHHHHH----hhcC--cc--cchHHHHHHhcCCcc--------hHHHHHHHH
Q psy10471 105 HDVLATLLNNLKVQ--ER--QNRVCTTVAIAIVA----ETCS--PF--TVLPALMNEYRVPEL--------NVQNGVLKA 164 (318)
Q Consensus 105 ~~~l~~Ll~~Lk~~--~~--~~R~~~~~ai~~i~----~~~~--p~--~vip~L~~~~~d~~~--------~v~~~vl~a 164 (318)
..-+..+++.++.+ +. -.|+..-..+.+.+ +.-. +. .++..|++.-+.+.. .-|-.+++.
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 56677788888765 22 46777655554432 1111 21 566667777666543 245566777
Q ss_pred HHHHHHH--Hccccccchh
Q psy10471 165 LSFLFEY--IGEMGKDYIY 181 (318)
Q Consensus 165 l~~i~~~--lg~~~~~yl~ 181 (318)
+..+|.. ++..+.+|+.
T Consensus 221 Lr~if~ds~L~~~~~~yi~ 239 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIE 239 (255)
T ss_pred HHHHHhcchhHHHHHHHHH
Confidence 7777864 4555666665
No 292
>KOG2973|consensus
Probab=48.58 E-value=75 Score=29.86 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=39.8
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
+..-+.++++.++..++.-+....-.-+..+..|-...++.+.+++++.++ -+.++.++..++...
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 455567777888766554444333222224556667788888888877766 445555555555543
No 293
>KOG0803|consensus
Probab=48.37 E-value=4.6e+02 Score=29.79 Aligned_cols=71 Identities=17% Similarity=0.341 Sum_probs=50.4
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh--CCCCCC-hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADR--GPEYVS-AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~--~~~~i~-~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
.=+..++..|.-.++..+.-|+.-++++.+. +..... .++|..++..++ .|+...||..+...+..+...+
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~---~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLI---IDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHHHHH
Confidence 3344455555556788899999999999863 333333 577888877444 9999999999888887755443
No 294
>KOG1837|consensus
Probab=48.25 E-value=2e+02 Score=32.89 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH--HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHH
Q psy10471 69 WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV--LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL 146 (318)
Q Consensus 69 ~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~--l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L 146 (318)
|.|+....+.-..+.....|-.|+.+.-.+.+.+|...+ ++ +.+|.+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~-------------------------------q~iPfL 1587 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLP-------------------------------QSIPFL 1587 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhh-------------------------------hhhHHH
Confidence 777766555444445566777777777777777776421 21 445556
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHccccccc
Q psy10471 147 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDY 179 (318)
Q Consensus 147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~y 179 (318)
-..+.|.+.++...+.+.+.++=+.+|..+..|
T Consensus 1588 aEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1588 AELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 666777777777666666666666778655555
No 295
>KOG2759|consensus
Probab=47.83 E-value=28 Score=33.84 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=49.6
Q ss_pred hHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 29 NLVEIIEHGLVDEQ-QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 29 ~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
+|+..++.+|+-.+ |.+--.|+.-||++.+..|+-...-+=..-=..++++++.+++.||.+|+.+...+.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 67888888887755 999999999999999877642211000001112457778889999999999876543
No 296
>KOG2973|consensus
Probab=47.04 E-value=1.3e+02 Score=28.42 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
+..++.+.+|.||.+|+..+-.+..+++..... .=-..+..+.+++++..+ -+-|..+++.++++-
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~-~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSK-YSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 556788999999999997776665543321111 111133345566677444 233455566655543
No 297
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=46.56 E-value=40 Score=25.48 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 44 KVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 44 ~vR~aa~~~LG~la~~~~~~i~~~~~~~-il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
..|.+++..||-+....++.+ ++ |+| ++..|-+..+| ...+|..+=++++..=
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~v-P~-w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDV-PP-WMPEVLEELARHAND-PQPIRTTVKKTLSEFK 57 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--S-S--HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC-cc-cHHHHHHHHHHHhCC-CchHHHHHHHHHHHHH
Confidence 358899999999999888776 44 555 55555555554 3347777777776543
No 298
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=46.47 E-value=24 Score=25.59 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHH-hccCcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHh
Q psy10471 4 DKNLGIKIVQQIAIL-MGCAILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIAD 58 (318)
Q Consensus 4 ~r~~~l~~i~~La~~-~g~~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~ 58 (318)
+...++=++|.++.. .|-.+.+ -.++++.++....+ +...+|-.|.-.||.++.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 456788899999884 3433333 23688888888776 568999999999999997
No 299
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=45.96 E-value=91 Score=25.01 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=46.5
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh--c-C--------CHHHHHHHHHHHHHH
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM--D-R--------DLVHRQTACATIKHM 209 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~--~-~--------~~~~R~~a~~~i~~l 209 (318)
.++..|++.+++.++.|+.-+++.|.+++..-...|+..+..=...+..+.. . . ...+|..|-.+++.+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 5666788888888888888889999998887444666666444444444442 1 1 247777777776544
No 300
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=44.97 E-value=83 Score=32.84 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcch
Q psy10471 84 KKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN 156 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~ 156 (318)
++.-|..++.-||.+...=.|. .++..|++.|+. |.+..
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~----------------------------------D~~~~ 126 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQF----------------------------------DTSIT 126 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhh----------------------------------cccHH
Confidence 4667888888898888754442 345555555552 33334
Q ss_pred HHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471 157 VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL 191 (318)
Q Consensus 157 v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l 191 (318)
+-..++.++..+...+....++|++.+...|.+++
T Consensus 127 ~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 127 VVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 44455555555555555566778888877777776
No 301
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=44.63 E-value=1.7e+02 Score=23.83 Aligned_cols=74 Identities=12% Similarity=-0.021 Sum_probs=47.1
Q ss_pred cchHHHHHHhc-CCcchHHHHHHHHHHHHHHHHccccccch--hhhHHH-HHHHHhc---CCHHHHHHHHHHHHHHhhhh
Q psy10471 141 TVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPL-LEDALMD---RDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 141 ~vip~L~~~~~-d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~-l~~~l~~---~~~~~R~~a~~~i~~la~~~ 213 (318)
.++-++.+.+. ..++.++.-++..+..+.+.-|..|-..+ ..++.- +.+++.. .+..+++-...++...+...
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 34444555554 34566666678888888888887655444 234443 5666642 24588888889888887766
Q ss_pred c
Q psy10471 214 Y 214 (318)
Q Consensus 214 ~ 214 (318)
+
T Consensus 118 ~ 118 (141)
T cd03565 118 R 118 (141)
T ss_pred C
Confidence 5
No 302
>KOG3678|consensus
Probab=44.62 E-value=2.1e+02 Score=28.63 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
.+.++.+..-+..+||.-...|...+. ..+-.+..-.+..++.+-+.++-+++..+..-
T Consensus 236 ~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~ 295 (832)
T KOG3678|consen 236 VELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG 295 (832)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc
Confidence 467788888999999976655554442 23344444445666777666777776666554
No 303
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=44.45 E-value=2.9e+02 Score=26.39 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=57.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471 152 VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP 231 (318)
Q Consensus 152 d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~ 231 (318)
-+..++....+.++..+..-....+......-+|.+...+-+....+|..+..+...+...+ +.+..+.....-.++
T Consensus 145 ~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l---~~~~~~s~~~~~~~~ 221 (372)
T PF12231_consen 145 FPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCL---GPNKELSKSVLEDLQ 221 (372)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh---ChhHHHHHHHHHHhc
Confidence 34455554455555554444333344444555566666666777888888766665554443 332222222111122
Q ss_pred cccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 232 NIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 232 ~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
.-.++. .+...+.+-++.+...=+...+.+.+|.++
T Consensus 222 ~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~ 257 (372)
T PF12231_consen 222 RSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVV 257 (372)
T ss_pred cccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHH
Confidence 222233 455555566666655555555555555555
No 304
>KOG0612|consensus
Probab=43.14 E-value=12 Score=40.79 Aligned_cols=88 Identities=25% Similarity=0.302 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc------CCChHHHHHHHHHHHHHH--------HHcC-hhhH
Q psy10471 196 LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF------ETSPHLVQAFMDAVEGLR--------VALG-PVRI 260 (318)
Q Consensus 196 ~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~------d~~~~vr~~ii~~i~~i~--------~alG-~~~~ 260 (318)
...|--.+..+-.|-. .|=+-|+--+++ |.+.|+|.+=.++.=++. .++| ||..
T Consensus 175 ~~ArFY~aEiVlAlds-----------lH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYI 243 (1317)
T KOG0612|consen 175 DWARFYTAEIVLALDS-----------LHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYI 243 (1317)
T ss_pred HHHHHHHHHHHHHHHH-----------HHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCcc
Confidence 4556666666544422 233444444443 234555554444443333 5666 6999
Q ss_pred HHhHHHHhccc-cccchH-HHHH----HHHHhhccccccccccCC
Q psy10471 261 LQYVLQGLFHP-ARKVRD-VYWK----IYNSLYIGGQDALISAYP 299 (318)
Q Consensus 261 ~~~vl~~l~~~-a~~~r~-~~w~----i~~~~~~~~~~~~~p~~p 299 (318)
.|-||+.+-.+ .++-++ -||+ +|.++|+. +|||-
T Consensus 244 SPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~-----TPFYa 283 (1317)
T KOG0612|consen 244 SPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGE-----TPFYA 283 (1317)
T ss_pred CHHHHHhhcCCccccCCccchhhhHHHHHHHHcCC-----CcchH
Confidence 99999999887 677777 8999 68999977 99974
No 305
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=42.77 E-value=97 Score=31.56 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471 43 QKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLE-LLKAHKKAIRRATVNTFGYIAKAIG 103 (318)
Q Consensus 43 ~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~-~L~d~~~~vR~~av~~lg~la~~ig 103 (318)
..++-+.+.-+|.+++..- +..+ ....|.+-.|.. .|.|++..++..|+++||+.|+.+.
T Consensus 494 ~~~kl~~~~FLs~lg~~~i~~~~q-~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 494 DHVKLALLDFLSSLGKLFIPESDQ-NPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred ccchHHHHHHHHHhccccCCcccc-chhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 4478888888888876432 2222 222333333332 2477888899999999999998543
No 306
>KOG1848|consensus
Probab=42.33 E-value=5.7e+02 Score=29.19 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=47.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHHHhhh---------chHHHH----HHHHHHHHH
Q psy10471 32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE-LLELLKA---------HKKAIR----RATVNTFGY 97 (318)
Q Consensus 32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~-Ll~~L~d---------~~~~vR----~~av~~lg~ 97 (318)
..+.+.+.|..+.||..|+.|+=|+..+-|...+...|..++-. ...+|.. +.+.++ ...+.+++-
T Consensus 1000 ~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisg 1079 (1610)
T KOG1848|consen 1000 VHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISG 1079 (1610)
T ss_pred HHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHH
Confidence 34567788888999999999999999887766656667765542 2333331 122221 336667777
Q ss_pred HHhhhCH
Q psy10471 98 IAKAIGP 104 (318)
Q Consensus 98 la~~igp 104 (318)
|++....
T Consensus 1080 Iaklf~e 1086 (1610)
T KOG1848|consen 1080 IAKLFSE 1086 (1610)
T ss_pred HHHHHHH
Confidence 7764443
No 307
>KOG4190|consensus
Probab=41.93 E-value=1.5e+02 Score=30.04 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC----HHHHH---HHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471 159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD----LVHRQ---TACATIKHMALGVYGFGCEDALTHLLNYVWP 231 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~----~~~R~---~a~~~i~~la~~~~~~~~~~~i~hll~~l~~ 231 (318)
.-+.++++.|....|..|. +-+..|...+++.-+. ...-- ...+.++-+.+-+ .....|.|+....++
T Consensus 414 aRi~ecLm~IaalYgenFi--llQ~fP~~sdLI~lc~KRisg~LEgaiiSs~qil~~mipcl---sDa~iMehlqhimld 488 (1034)
T KOG4190|consen 414 ARIEECLMEIAALYGENFI--LLQFFPFCSDLIELCHKRISGQLEGAIISSFQILELMIPCL---SDAQIMEHLQHIMLD 488 (1034)
T ss_pred HHHHHHHHHHHHHhcchhh--hhhhhHHHHHHHHHHhhhcccccchhhhhHHHHHHHhcccc---chHHHHHHHHHHhhh
Confidence 4578889999888886431 1344555555553222 11111 1222232222222 344555554443333
Q ss_pred ccc--------CC----------ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 232 NIF--------ET----------SPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 232 ~i~--------d~----------~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
.|. .+ ..-+.+.+++++-++..-+|.|....|.-+.+
T Consensus 489 aillpilrllsstnlvmpsgylg~~~ia~Kf~dai~ais~kiGsdmTReh~cQPl 543 (1034)
T KOG4190|consen 489 AILLPILRLLSSTNLVMPSGYLGEEFIAQKFCDAIHAISQKIGSDMTREHACQPL 543 (1034)
T ss_pred hhhhhHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHhcchhhHHHhcCcc
Confidence 222 11 23456679999999999999998888877665
No 308
>KOG3723|consensus
Probab=41.36 E-value=1.5e+02 Score=30.25 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh---------cCCHHHHHHHHHHHHHHhhhhcCCCch----hH
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM---------DRDLVHRQTACATIKHMALGVYGFGCE----DA 221 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~---------~~~~~~R~~a~~~i~~la~~~~~~~~~----~~ 221 (318)
++|-+.++.-+....+-.| ....|-..++-.+..++. +.|+.+-+-|++.+..+-....+.+-- -.
T Consensus 55 QSVVEIcVtRit~aIRET~-siE~YaAaLVDlLd~cL~hnl~p~g~kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~ 133 (851)
T KOG3723|consen 55 QSVVEICVTRITTAIRETE-SIEKYAAALVDLLDSCLEHNLRPFGKKDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPI 133 (851)
T ss_pred chhhhhHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHhccCccCCCCCCCCchhhHHHHHHHHHHHhcCCCCceeeehhh
Confidence 4455555544444444333 345688888888888884 446778888999998887776554421 12
Q ss_pred HHHHHHhhhhcccCCC-hHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcccccc--chH------HHHHHHHHhhccccc
Q psy10471 222 LTHLLNYVWPNIFETS-PHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARK--VRD------VYWKIYNSLYIGGQD 292 (318)
Q Consensus 222 i~hll~~l~~~i~d~~-~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~~a~~--~r~------~~w~i~~~~~~~~~~ 292 (318)
-...|++..+.+.-.. ..+..++++.++ ++.+++. +.+ ..-|+.+++|....|
T Consensus 134 av~fL~rgn~el~rn~~~ylslaai~~ad------------------LL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~ 195 (851)
T KOG3723|consen 134 AVKFLHRGNKELCRNMSNYLSLAAITKAD------------------LLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQ 195 (851)
T ss_pred HHHHHhccChhhcccchhhhhHHHHhhhh------------------hccCchHHHHHHHhccchHHHHHHHHHHhcCCC
Confidence 2234444333332211 122222232222 2233221 111 456788999999999
Q ss_pred cccccCCCC
Q psy10471 293 ALISAYPRI 301 (318)
Q Consensus 293 ~~~p~~p~~ 301 (318)
.+.||+|.+
T Consensus 196 ~i~PhlP~l 204 (851)
T KOG3723|consen 196 PINPHLPEL 204 (851)
T ss_pred ccCcccHHH
Confidence 999998876
No 309
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=40.44 E-value=1.7e+02 Score=22.54 Aligned_cols=75 Identities=4% Similarity=-0.104 Sum_probs=47.6
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH-HHHhhhh----c--ccCCChHHHHHHHHHHHH
Q psy10471 178 DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH-LLNYVWP----N--IFETSPHLVQAFMDAVEG 250 (318)
Q Consensus 178 ~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h-ll~~l~~----~--i~d~~~~vr~~ii~~i~~ 250 (318)
.....++-.+..-+.+.++.+...+..++..++..++.....+.-.+ ++..++. . -.+.+..||..+.+.+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 45567888888888899999999999999999888742211111111 2222211 1 123467888888887776
Q ss_pred HH
Q psy10471 251 LR 252 (318)
Q Consensus 251 i~ 252 (318)
.+
T Consensus 113 w~ 114 (115)
T cd00197 113 WA 114 (115)
T ss_pred Hh
Confidence 43
No 310
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=39.68 E-value=3e+02 Score=25.17 Aligned_cols=126 Identities=14% Similarity=0.206 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHh---hhCHH---------HHHHHHHHhh---ccc----chhhHHHHHHHHH-HHHhh-------
Q psy10471 84 KKAIRRATVNTFGYIAK---AIGPH---------DVLATLLNNL---KVQ----ERQNRVCTTVAIA-IVAET------- 136 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~---~igp~---------~~l~~Ll~~L---k~~----~~~~R~~~~~ai~-~i~~~------- 136 (318)
++..|..|+..+..--+ .+||. .++...+... ..+ ....|+|.+.++- .+|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 35668888877766433 23332 2333333322 211 2268999988883 44422
Q ss_pred ---cCcccchHHHHHHhcCCc-chHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471 137 ---CSPFTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 137 ---~~p~~vip~L~~~~~d~~-~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~l 209 (318)
--|.-+.|.|-..-++-+ ..+|-..++.++.++|.=..+...|+ .+++|...+.++.++..-|.-|.-.+..+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 113445555533334422 45677888888888886555666788 57999999999888766665555555444
No 311
>KOG2199|consensus
Probab=37.68 E-value=3.5e+02 Score=26.39 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=60.7
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCC
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFG 217 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~ 217 (318)
..|-++|+.+...++.|.--++..+..+++..|..|..=+ ..+...+.+++. ..-+.++.....++...+..+|.-.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 6788899999888888887788888888888887654444 346677777777 4447788888888888887776433
Q ss_pred chhHHHHH
Q psy10471 218 CEDALTHL 225 (318)
Q Consensus 218 ~~~~i~hl 225 (318)
.=+.|..+
T Consensus 125 ~lsLi~~l 132 (462)
T KOG2199|consen 125 SLSLISAL 132 (462)
T ss_pred chhHHHHH
Confidence 33344333
No 312
>KOG1932|consensus
Probab=36.84 E-value=6.3e+02 Score=28.08 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=59.9
Q ss_pred HHHHhhcCCCC--HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----HHhhhchHH------HHHHHHHHHHHH
Q psy10471 32 EIIEHGLVDEQ--QKVQENCIDLVGRIADRGPEYVSAREWMRICFELL-----ELLKAHKKA------IRRATVNTFGYI 98 (318)
Q Consensus 32 ~~l~~~l~d~~--~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll-----~~L~d~~~~------vR~~av~~lg~l 98 (318)
..|...+.|++ .++|.+|+-+|...|..-.++..++.+..++.... .+-|.++++ ++.+--.++..+
T Consensus 677 ~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~l 756 (1180)
T KOG1932|consen 677 SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPVAFASL 756 (1180)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHHHHHHh
Confidence 56777888876 88999999999999965333223444444443322 222333332 555555666655
Q ss_pred HhhhC--HHHHHHHHHHhhcccch--------hhHHHHHHHHH
Q psy10471 99 AKAIG--PHDVLATLLNNLKVQER--------QNRVCTTVAIA 131 (318)
Q Consensus 99 a~~ig--p~~~l~~Ll~~Lk~~~~--------~~R~~~~~ai~ 131 (318)
...=| |.++..=|++.||-.+. -.|...+++++
T Consensus 757 R~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~ 799 (1180)
T KOG1932|consen 757 RGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLV 799 (1180)
T ss_pred ccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHh
Confidence 54433 77888889999983332 24555555554
No 313
>PF05536 Neurochondrin: Neurochondrin
Probab=36.16 E-value=4.8e+02 Score=26.49 Aligned_cols=222 Identities=14% Similarity=0.104 Sum_probs=125.7
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChh--hH----HHHHHHHHHHhhh-------chHHHHHHHHHHH
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAR--EW----MRICFELLELLKA-------HKKAIRRATVNTF 95 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~--~~----~~il~~Ll~~L~d-------~~~~vR~~av~~l 95 (318)
+-+...+.+|+..+..-|-+++..+-.+.......-..+ -| .+.+. ++|++ +...-+..|+..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~---RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLD---RLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHH---HHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 345556667777666667788777777776443211000 00 11222 22344 2334556666666
Q ss_pred HHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHH---HH-hhcCc-----ccchHHHHHHhcCCcchHH
Q psy10471 96 GYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAI---VA-ETCSP-----FTVLPALMNEYRVPELNVQ 158 (318)
Q Consensus 96 g~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~---i~-~~~~p-----~~vip~L~~~~~d~~~~v~ 158 (318)
...+. .|. .-++.|++.+...+. ..++..++.. ++ ..-|+ ...+|.|...+..++ ..+
T Consensus 82 ~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~-~~~ 156 (543)
T PF05536_consen 82 AAFCR--DPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS-FQM 156 (543)
T ss_pred HHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc-chH
Confidence 66553 332 357788888864433 2344444433 22 11222 368899999887733 334
Q ss_pred HHHHHHHHHHHHHHccc----cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-----CchhHHHHHHHhh
Q psy10471 159 NGVLKALSFLFEYIGEM----GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-----GCEDALTHLLNYV 229 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~----~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-----~~~~~i~hll~~l 229 (318)
..+++.+..+....+.. ....+..+++.+...+.......|-.++..+..+-+..... ....-..++...+
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl 236 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL 236 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence 55666666666555532 22344567788887777666666777777777766555210 1123334444443
Q ss_pred hhcccC-CChHHHHHHHHHHHHHHHHcChh
Q psy10471 230 WPNIFE-TSPHLVQAFMDAVEGLRVALGPV 258 (318)
Q Consensus 230 ~~~i~d-~~~~vr~~ii~~i~~i~~alG~~ 258 (318)
..-+.. ..+.-|..++....++....|.+
T Consensus 237 ~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 237 RDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 222221 46788999999999999999974
No 314
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=35.98 E-value=1.4e+02 Score=25.21 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=30.2
Q ss_pred CChHhHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCC
Q psy10471 25 PHLKNLVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPE 62 (318)
Q Consensus 25 P~l~~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~ 62 (318)
-++..+=..++..| .|..|+|.-|++..|+.+++.-++
T Consensus 72 ~nI~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 72 ENINDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 34556666677666 888899999999999999986665
No 315
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=35.74 E-value=5.4e+02 Score=27.01 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh---hcCCCchh-HHHHHHHhhhhcc--
Q psy10471 161 VLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALG---VYGFGCED-ALTHLLNYVWPNI-- 233 (318)
Q Consensus 161 vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~---~~~~~~~~-~i~hll~~l~~~i-- 233 (318)
+=+.+..+|+.+-......+ ...+|.+..++-++++..|+.|...++++... +...+++. ....+... +..+
T Consensus 98 l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~-l~~i~~ 176 (727)
T PF12726_consen 98 LRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSH-LYRISP 176 (727)
T ss_pred HHHHHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHH-HHHhcc
Confidence 34446677776644333344 67889999999999999999999999998664 22223332 22222222 2222
Q ss_pred cCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471 234 FETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ 266 (318)
Q Consensus 234 ~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~ 266 (318)
...+++.-...-..+..|...+..+.+..++-.
T Consensus 177 ~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~ 209 (727)
T PF12726_consen 177 NNYNPDSVIRFWSGFSLILRLLDKEQITHSLRA 209 (727)
T ss_pred CCCChhHHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 123455566688888888888888877666655
No 316
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.39 E-value=68 Score=30.69 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=25.3
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRI 56 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~l 56 (318)
+++.-+++.|++.|.++.||+..+.+|++.
T Consensus 45 ~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 45 MRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 345556678999999999999999999984
No 317
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=35.03 E-value=55 Score=27.21 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=42.4
Q ss_pred HhHHHHHHhhcC--CCCHHHHHHHHHHHHHHHh--hCCCCCChhhHHHHHHHHHHHhhh-chHH-HHHHHHHHHH
Q psy10471 28 KNLVEIIEHGLV--DEQQKVQENCIDLVGRIAD--RGPEYVSAREWMRICFELLELLKA-HKKA-IRRATVNTFG 96 (318)
Q Consensus 28 ~~l~~~l~~~l~--d~~~~vR~aa~~~LG~la~--~~~~~i~~~~~~~il~~Ll~~L~d-~~~~-vR~~av~~lg 96 (318)
+.+++.+++.+. .++..+..++++.|..-|. ....++ .+.+.+++. +..+. +++. +|..|...+.
T Consensus 85 eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I-~~~~~~~L~---~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 85 EGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI-SKNYVSWLK---ELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC-HHHCHHHHH---HHTTTCC-HH-CHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH-HHHHHHHHH---HHHccccchHHHHHHHHHHHh
Confidence 356677777777 5678899999999998774 334555 677777766 44454 4454 6766655543
No 318
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.86 E-value=1.7e+02 Score=28.10 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=51.1
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 97 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~ 97 (318)
.+.....++..+++.++..|.-++..+|......+ ...+...+.+++..| +.|..+.+|+++..++++
T Consensus 5 ~~~~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~L---l~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 5 MQSTDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPL---LDDSSEEVRRELAAALAQ 73 (364)
T ss_pred hhhhHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH---hhCccHHHHHHHHHHHHh
Confidence 34456667888899999999999999998887666 222246666665544 488888999999999987
No 319
>KOG2153|consensus
Probab=34.05 E-value=5.6e+02 Score=26.65 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH
Q psy10471 66 AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 66 ~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp 104 (318)
+++=+..+..+.+++.+.++.+|..++-++-.+=+.+-|
T Consensus 205 PE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP 243 (704)
T KOG2153|consen 205 PEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIP 243 (704)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcc
Confidence 677777778888888888788888777777665555544
No 320
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=32.89 E-value=3.1e+02 Score=23.39 Aligned_cols=34 Identities=9% Similarity=0.162 Sum_probs=24.7
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRG 60 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~ 60 (318)
+.+++..++...-..=.+||..|..++.++....
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~ 38 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQ 38 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555666665555555889999999999998544
No 321
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=32.84 E-value=43 Score=27.84 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc----------ccccchH-HHHHHHHHhhccccccccccCCCC
Q psy10471 238 PHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH----------PARKVRD-VYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 238 ~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~----------~a~~~r~-~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
.++-..++++.-.++.-+.+..|.|......=. +++..|. .+++++|.++..-..-|+||+.++
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~l 109 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYL 109 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888999999999988888821 2334454 899999999877777999998776
No 322
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=31.61 E-value=5.6e+02 Score=26.57 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=61.2
Q ss_pred hHhHHHH-HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471 27 LKNLVEI-IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 27 l~~l~~~-l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~ 105 (318)
++.+... +....+|-.+..|-.|...|+.-....++|..-..+.+-.. -.|.|.+.+||....+.+-.+.....-.
T Consensus 272 i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~G---W~LSDn~~~vRl~v~Kil~~L~s~~p~~ 348 (740)
T COG5537 272 IKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNG---WSLSDNHEGVRLLVSKILLFLCSRIPHT 348 (740)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccc---cccccchHHHHHHHHHHHHHHHhcCCcc
Confidence 3443333 46677787899999999999987776554331111222212 3458888899999999998888644322
Q ss_pred HH--------HHHHHHhhcccchhhHHHHHHHHH
Q psy10471 106 DV--------LATLLNNLKVQERQNRVCTTVAIA 131 (318)
Q Consensus 106 ~~--------l~~Ll~~Lk~~~~~~R~~~~~ai~ 131 (318)
+. ...++..++....-+|.+..+.+-
T Consensus 349 d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~ 382 (740)
T COG5537 349 DAIRRFVERFKDRILEFLRTDSDCVRICSIKSLC 382 (740)
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Confidence 22 333444554332236766665553
No 323
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=31.47 E-value=3.8e+02 Score=23.88 Aligned_cols=73 Identities=15% Similarity=0.073 Sum_probs=51.0
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
.|+=+.+++.+....++.+.-.|++++-..--.+..+.. ..++.+|+..+ +.|..+-||.+.-++|-++++..
T Consensus 113 ~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~~---~~~if~i~E~~---l~d~e~fV~KAigWaLrq~~k~~ 185 (222)
T COG4912 113 IPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTLD---LLEIFEIIELL---LGDKEFFVQKAIGWALRQIGKHS 185 (222)
T ss_pred cccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHH---ccChHHHHHHHHHHHHHHHHhhc
Confidence 577778888886555666677877776655544444333 34777888744 48888889999999998888733
No 324
>KOG1566|consensus
Probab=31.45 E-value=1.4e+02 Score=28.07 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=55.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC-HHH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGP------EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG-PHD 106 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~------~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig-p~~ 106 (318)
...++++.+--.|+.+.+.+|.+--..+ -|++-++-..++. .+|+|+.+.++-+|.+.|-...+... |..
T Consensus 217 ~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM---~llrdkskniQ~eAFhvFKvfvAnpnK~q~ 293 (342)
T KOG1566|consen 217 YEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMM---NLLRDKSKNIQLEAFHVFKVFVANPNKPQP 293 (342)
T ss_pred HHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHH---HHhhCccccchHHHHHHHHHHhcCCCCCch
Confidence 4556677777789999999999875444 2554456667755 66699999999999999877665544 455
Q ss_pred HHHHHHHh
Q psy10471 107 VLATLLNN 114 (318)
Q Consensus 107 ~l~~Ll~~ 114 (318)
+.+.|.+|
T Consensus 294 V~~IL~~N 301 (342)
T KOG1566|consen 294 VRDILVRN 301 (342)
T ss_pred HHHHHHhC
Confidence 55555544
No 325
>KOG2199|consensus
Probab=31.38 E-value=3.2e+02 Score=26.60 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=59.5
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhh
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKA 101 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ 101 (318)
-++-+..|..-+.+.+|.|.--|+..++.++.++|..+. -++|...+..|+ ++ .++.|+...-..+-..++.
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~---~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALI---ESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHH---hhcccHHHHHHHHHHHHHHHHH
Confidence 356777788888999999999999999999999996443 366666666555 53 4455554433334444443
Q ss_pred h--CHH-HHHHHHHHhhcc
Q psy10471 102 I--GPH-DVLATLLNNLKV 117 (318)
Q Consensus 102 i--gp~-~~l~~Ll~~Lk~ 117 (318)
+ +|. .++..|.+.||.
T Consensus 120 ~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 120 FKKDPSLSLISALYKKLKE 138 (462)
T ss_pred hccCcchhHHHHHHHHHHH
Confidence 3 343 678888887764
No 326
>KOG1789|consensus
Probab=30.78 E-value=4.3e+02 Score=29.56 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=66.8
Q ss_pred HHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh--hC---
Q psy10471 31 VEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA--IG--- 103 (318)
Q Consensus 31 ~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~--ig--- 103 (318)
.+++...++- .++.++.-|++-+..+-.+.+ .+. .-+-+ ++..||.+|.+ .++-|.-+++++..++.. ++
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~-vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCN-VLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhh-HHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3455555554 468899999988876654333 111 11111 45556666665 456788888888776642 11
Q ss_pred -HHHHHHHHHHhhc-ccchhhHHHHHHHHHH-HHhh-cCcc------cchH-HHHHHhcCC
Q psy10471 104 -PHDVLATLLNNLK-VQERQNRVCTTVAIAI-VAET-CSPF------TVLP-ALMNEYRVP 153 (318)
Q Consensus 104 -p~~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~-i~~~-~~p~------~vip-~L~~~~~d~ 153 (318)
.+-.+..++..+- ...-|.|..++.-++. .++. -||- ..+| .++..+||.
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS 1910 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC
Confidence 1101122333332 2234788888888875 4444 3552 3455 477888873
No 327
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=30.60 E-value=1.5e+02 Score=25.16 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=28.3
Q ss_pred ChHhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCC
Q psy10471 26 HLKNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPE 62 (318)
Q Consensus 26 ~l~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~ 62 (318)
-+..+...+...|. |..|+||-|++..++.+++..+.
T Consensus 61 ~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~~~ 98 (167)
T PF11099_consen 61 NIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKWGN 98 (167)
T ss_dssp -HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHHhh
Confidence 37788888888777 66699999999999999986653
No 328
>KOG2188|consensus
Probab=30.10 E-value=6.4e+02 Score=26.10 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=10.0
Q ss_pred ccccchHHHHHHHHHhh
Q psy10471 271 PARKVRDVYWKIYNSLY 287 (318)
Q Consensus 271 ~a~~~r~~~w~i~~~~~ 287 (318)
..+++.|.-|..++-+|
T Consensus 561 ~GSrv~eK~wea~~~~~ 577 (650)
T KOG2188|consen 561 FGSRVFEKCWEATDVLY 577 (650)
T ss_pred cccHHHHHHHHHhhHHH
Confidence 44566666666665444
No 329
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=29.41 E-value=2.6e+02 Score=30.12 Aligned_cols=145 Identities=14% Similarity=0.207 Sum_probs=82.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHh---------hhCH
Q psy10471 36 HGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA--HKKAIRRATVNTFGYIAK---------AIGP 104 (318)
Q Consensus 36 ~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d--~~~~vR~~av~~lg~la~---------~igp 104 (318)
...++.+|..+..|=..|.|.-.--| ....|+++..+ ..-++|.+|+--|-.-.+ .+-|
T Consensus 11 ~~aqs~~p~s~k~AE~~Lrqwe~q~g----------F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 11 DLAQSPDPPSVKCAEERLRQWEKQHG----------FALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HhhcCCCCchHhhHHHHHHhhhcccc----------HHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 44566667777777666655433211 11223333222 344577666555532111 1222
Q ss_pred H--H-HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc---cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--cc
Q psy10471 105 H--D-VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MG 176 (318)
Q Consensus 105 ~--~-~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~---~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--~~ 176 (318)
. + +-..++..+-..+.+.-...+.|++.||.--+|. +++|.|.+.+.+-+...-..++.++.+|||.++. ++
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rs 160 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRS 160 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2 1 1223444333334444446688888999888885 8999999999886666667888888899988875 34
Q ss_pred ccchhhhHHHHHHH
Q psy10471 177 KDYIYAVTPLLEDA 190 (318)
Q Consensus 177 ~~yl~~iiP~l~~~ 190 (318)
.+-...+.|.+...
T Consensus 161 d~lf~ei~p~L~~~ 174 (947)
T COG5657 161 DALFLEIAPVLLSI 174 (947)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444455555433
No 330
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=28.46 E-value=3e+02 Score=23.36 Aligned_cols=74 Identities=19% Similarity=0.096 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhH
Q psy10471 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 260 (318)
Q Consensus 181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~ 260 (318)
|..+|.+...+.-.+..-...+..++..-.+. +-++ -+..+-+.. .++.||+.+++.++. ++++.+
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i----~~~~----aLeLL~~~f--~d~~VR~yAV~~L~~----~sd~eL 103 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKL----KPEQ----ALELLDCNF--PDEHVREFAVRCLEK----LSDDEL 103 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCC----CHHH----HHHHCCCcC--CCHHHHHHHHHHHHh----CCHHHH
Confidence 66778888777666665555555565443222 2223 344433332 348899998888775 567765
Q ss_pred HHhHHHHh
Q psy10471 261 LQYVLQGL 268 (318)
Q Consensus 261 ~~~vl~~l 268 (318)
..|+++.+
T Consensus 104 ~~yL~QLV 111 (171)
T cd00872 104 LQYLLQLV 111 (171)
T ss_pred HHHHHHHH
Confidence 55555555
No 331
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.43 E-value=3.4e+02 Score=22.39 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=47.3
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHH-HHhcCC--HHHHHHHHHHHHHHhh
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED-ALMDRD--LVHRQTACATIKHMAL 211 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~-~l~~~~--~~~R~~a~~~i~~la~ 211 (318)
.+.|++++....++..+-...++.+..++...+...+.-++.+++.+.. .+.... ...|..+...+..+..
T Consensus 73 ~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 73 DLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 4566677777666666667788888888887777666666667777776 444332 4667777777666544
No 332
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=28.08 E-value=5.9e+02 Score=25.06 Aligned_cols=202 Identities=17% Similarity=0.121 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH-HHHHHhhhchHHHHHHHHHHHHHHHhhhC-------HHHHHHHHHHh
Q psy10471 43 QKVQENCIDLVGRIADRGPEYVSAREWMRICF-ELLELLKAHKKAIRRATVNTFGYIAKAIG-------PHDVLATLLNN 114 (318)
Q Consensus 43 ~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~-~Ll~~L~d~~~~vR~~av~~lg~la~~ig-------p~~~l~~Ll~~ 114 (318)
-+-|-+|+++||.++..-+.. .+..++. .|+..|+++...-|..|--.+...++... |..+...|...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~----~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES----SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 445899999999999855432 2222333 25677788666666665555555555433 23566667777
Q ss_pred hcccchhhHHHHHHHH-----------HHHHhhcC-cccchHHHHHHhcC-----Ccc-hH---HHHHHHHHHHHHHHHc
Q psy10471 115 LKVQERQNRVCTTVAI-----------AIVAETCS-PFTVLPALMNEYRV-----PEL-NV---QNGVLKALSFLFEYIG 173 (318)
Q Consensus 115 Lk~~~~~~R~~~~~ai-----------~~i~~~~~-p~~vip~L~~~~~d-----~~~-~v---~~~vl~al~~i~~~lg 173 (318)
|..++.......+..+ ....+.+. |..-+|.|-...+. |+. ++ .+.+-..+..+.+.++
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 7644322222222222 12222222 44555554433331 111 11 2333334455555555
Q ss_pred cccc----cch----hhhH---HHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccC-CChHHH
Q psy10471 174 EMGK----DYI----YAVT---PLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE-TSPHLV 241 (318)
Q Consensus 174 ~~~~----~yl----~~ii---P~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d-~~~~vr 241 (318)
..-+ +-+ ..+. ..+.......+..++..++.++-.+...- +-+..+..=+|+.++. ++..++
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP------~KLnPiIrpLMdSIK~Een~~LQ 330 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLP------KKLNPIIRPLMDSIKREENELLQ 330 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCccHHHHHHHHHhhccccHHHH
Confidence 4221 111 1122 22222223334455555555553332221 2223333344788874 567788
Q ss_pred HHHHHHHHHHHHH
Q psy10471 242 QAFMDAVEGLRVA 254 (318)
Q Consensus 242 ~~ii~~i~~i~~a 254 (318)
+...+++-.+...
T Consensus 331 ~rsA~slA~Li~~ 343 (441)
T PF12054_consen 331 QRSAESLARLIQL 343 (441)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777665443
No 333
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=28.08 E-value=4.6e+02 Score=23.77 Aligned_cols=116 Identities=14% Similarity=0.189 Sum_probs=69.8
Q ss_pred cchHHHHHHhcCCcchHH----HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhc
Q psy10471 141 TVLPALMNEYRVPELNVQ----NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVY 214 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~----~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~ 214 (318)
...|.+++.++-++.-.. ..+..-+..++.++|.. =+..+.+.+.+++ .-+|..+..++..++..-
T Consensus 73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G-------~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~- 144 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDG-------DIEPLKELIEDPDADEYVRMAAISALAFLVHEG- 144 (249)
T ss_pred hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCC-------CHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC-
Confidence 567778888865543221 44555566666665431 1245566676665 688999999998886653
Q ss_pred CCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 215 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 215 ~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
....++.+.++..++-..+ +.+++. +...+-+-+..++++.+.|.+=...
T Consensus 145 ~~~Re~vi~~f~~ll~~~l-~~~~~~---~~~~Lv~~~~dL~~~EL~~~I~~~f 194 (249)
T PF06685_consen 145 PISREEVIQYFRELLNYFL-ERNPSF---LWGSLVADICDLYPEELLPEIRKAF 194 (249)
T ss_pred CCCHHHHHHHHHHHHHHHh-ccCchH---HHHHHHHHHHhcCHHHhHHHHHHHH
Confidence 3445778888777754434 333333 3344444455667777777655544
No 334
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.79 E-value=2.8e+02 Score=22.67 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=21.9
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRI 56 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~l 56 (318)
-+++-..+..+|.+.++.||..|+++|...
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345666677777888888888888887753
No 335
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=27.70 E-value=6.9e+02 Score=25.74 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcc---------------------hHH-HHHHHHHHHHHHHHccccc-
Q psy10471 121 QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL---------------------NVQ-NGVLKALSFLFEYIGEMGK- 177 (318)
Q Consensus 121 ~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~---------------------~v~-~~vl~al~~i~~~lg~~~~- 177 (318)
..+..+...+..++..|.|-.++-.++..+.+.+. .++ ..+++.+..+.+-++.+-.
T Consensus 81 ~~~~~~~~~l~~la~~gnPkE~~l~~~E~l~~l~~ed~~~~~~~~~~~~~~~~~~~~~kf~~Ll~~l~~~l~ri~t~~ps 160 (633)
T PF08568_consen 81 PCVDCCMKCLEELARLGNPKELLLKVCELLEELSPEDEDDEEDDESIERNQIEEPFDLKFYCLLELLQIVLKRIQTKYPS 160 (633)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhcccchh
Confidence 34455556666788888887766665555543221 011 2367777888887776544
Q ss_pred cchhhhHHHHHHHHhcCC
Q psy10471 178 DYIYAVTPLLEDALMDRD 195 (318)
Q Consensus 178 ~yl~~iiP~l~~~l~~~~ 195 (318)
.|+...++.+.+.++...
T Consensus 161 ~Fl~~~l~~i~~~~~~~~ 178 (633)
T PF08568_consen 161 RFLAMALSAILNFLKNNP 178 (633)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 367777777777775443
No 336
>KOG3613|consensus
Probab=27.52 E-value=3.8e+02 Score=31.09 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=93.1
Q ss_pred cCCChHhHHHHHHhhcCCCC---HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH-HHHHHHHHHHHHH
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQ---QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK-AIRRATVNTFGYI 98 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~---~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~-~vR~~av~~lg~l 98 (318)
..|-+..+.-.+.|++++.+ ..--++++..|.-++... |. -+.|-..+.+| +.|+.+ +.-..+++..-.+
T Consensus 1391 v~~lls~v~~~ItPylk~~sa~nap~~~a~~~LLasLSgy~--y~-rkaWrKe~~eL---F~D~~fFqmd~s~l~~W~~I 1464 (1749)
T KOG3613|consen 1391 VVPLLSIVNYNITPYLKNHSARNAPLFRAGLQLLASLSGYQ--YT-RKAWRKEFLEL---FLDNSFFQMDLSCLRHWSSI 1464 (1749)
T ss_pred hhhHHHHHHHhhhHHhccccccccchHHHHHHHHHHHhcCc--hh-HHHHHHHHHHH---hcCcchheeeHHHHHHHHHH
Confidence 57777778888899999854 223466666666555422 22 46677776644 466333 3333333332222
Q ss_pred HhhhC--HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH-Hccc
Q psy10471 99 AKAIG--PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY-IGEM 175 (318)
Q Consensus 99 a~~ig--p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~-lg~~ 175 (318)
....- +...+.-||.-.- ..+..+.+.+.. ||.|.+.+...++-++++.=+ =-+.
T Consensus 1465 id~lmt~d~t~f~DLm~ri~--------------------~s~s~s~~lftS--rd~e~e~ra~~LkRiaf~ifsSp~Dq 1522 (1749)
T KOG3613|consen 1465 IDHLMTHDKTIFNDLMTRIS--------------------SSQSGSLNLFTS--RDQELEQRAMLLKRIAFLIFSSPLDQ 1522 (1749)
T ss_pred HHHHHhCCchHHHHHHHHhh--------------------cccccceeeeec--chHHHHHHHHHHHhhHhheeeCcHHh
Confidence 21111 1111222221100 001122222222 477788889999999876432 2224
Q ss_pred cccchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhc
Q psy10471 176 GKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 176 ~~~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~ 214 (318)
+-.|++.|+..+.+.++ ..++.+|.+.--.+.-+.....
T Consensus 1523 y~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~S 1562 (1749)
T KOG3613|consen 1523 YLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRIS 1562 (1749)
T ss_pred hhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcC
Confidence 55677888888888888 7889999988888877776663
No 337
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=27.14 E-value=4.2e+02 Score=23.01 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=49.1
Q ss_pred HHHHHhhcCC-CCHHHHH-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 31 VEIIEHGLVD-EQQKVQE-NCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 31 ~~~l~~~l~d-~~~~vR~-aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l 108 (318)
++.+...+.+ .++.+-. .|-..+|.+... .++..+.+. +-.++++.|.||+|+.+.-...+...+..+.
T Consensus 82 ~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~~~~~l~---~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l~ 152 (208)
T cd07064 82 LPLLEELITTKSWWDTVDSLAKVVGGILLAD------YPEFEPVMD---EWSTDENFWLRRTAILHQLKYKEKTDTDLLF 152 (208)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------ChhHHHHHH---HHHcCCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3334334444 3455443 344444555432 223334444 4447788888888887766666666665555
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHH
Q psy10471 109 ATLLNNLKVQERQNRVCTTVAIAIVA 134 (318)
Q Consensus 109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~ 134 (318)
.....++.+++.=+|.++.=++..++
T Consensus 153 ~~~~~~~~d~e~fI~KAiGW~LRe~~ 178 (208)
T cd07064 153 EIILANLGSKEFFIRKAIGWALREYS 178 (208)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 55555666654434444433333333
No 338
>KOG0889|consensus
Probab=26.66 E-value=4.7e+02 Score=32.79 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhh----cC--------c-c-cchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471 104 PHDVLATLLNNLKVQERQNRVCTTVAIAIVAET----CS--------P-F-TVLPALMNEYRVPELNVQNGVLKALSFLF 169 (318)
Q Consensus 104 p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~----~~--------p-~-~vip~L~~~~~d~~~~v~~~vl~al~~i~ 169 (318)
|...+++|...+..++...+.+-..+++.+++. .+ | | .+++-+.+.+.|+.-..+.+=+.+|..+.
T Consensus 982 ~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 982 PSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 456788888888866666667777777665532 11 1 1 23333444444544333333333333333
Q ss_pred HHHcccc-ccchhhhHHHHHHHHhcCC--------HHHHHHHHHHHHHHhhhhcCCCc-hhHHHHHHHhhhhcccCCChH
Q psy10471 170 EYIGEMG-KDYIYAVTPLLEDALMDRD--------LVHRQTACATIKHMALGVYGFGC-EDALTHLLNYVWPNIFETSPH 239 (318)
Q Consensus 170 ~~lg~~~-~~yl~~iiP~l~~~l~~~~--------~~~R~~a~~~i~~la~~~~~~~~-~~~i~hll~~l~~~i~d~~~~ 239 (318)
+.+.... .++...++-.+.-++++.. ...+....+.+....-.....+. ...+++....+.-.++++++.
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 3322211 1222333334444443322 12333333333332222111111 134455555556888999999
Q ss_pred HHHHHHHHHHHHHHHcChh
Q psy10471 240 LVQAFMDAVEGLRVALGPV 258 (318)
Q Consensus 240 vr~~ii~~i~~i~~alG~~ 258 (318)
||.....++.-+....|.+
T Consensus 1142 VR~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKS 1160 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999863
No 339
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.08 E-value=3.8e+02 Score=21.81 Aligned_cols=79 Identities=6% Similarity=-0.059 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchh-HHHHHHHh-hhhccc---CCChHHHHHHHHHHHHHHHH
Q psy10471 181 YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCED-ALTHLLNY-VWPNIF---ETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 181 ~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~-~i~hll~~-l~~~i~---d~~~~vr~~ii~~i~~i~~a 254 (318)
...+-.+.+-+. +.++.+...+..+++.++.+|+..-+.+ .-..+++. +...+. +...+|+..+++.+..-+.+
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 345566677666 4678888889999999988884111111 11123332 222222 23458999999999999998
Q ss_pred cChhh
Q psy10471 255 LGPVR 259 (318)
Q Consensus 255 lG~~~ 259 (318)
++.+.
T Consensus 117 f~~~~ 121 (141)
T cd03565 117 FRGSP 121 (141)
T ss_pred hCCCc
Confidence 86543
No 340
>KOG2005|consensus
Probab=24.94 E-value=8.3e+02 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=23.6
Q ss_pred ChHhHHHHHHhhcCCCCHH--HHHHHHHHHHHHHhhCC
Q psy10471 26 HLKNLVEIIEHGLVDEQQK--VQENCIDLVGRIADRGP 61 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~--vR~aa~~~LG~la~~~~ 61 (318)
.-++++..+.|.+.|.++. |.--|..+||.+.-++.
T Consensus 484 q~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGsc 521 (878)
T KOG2005|consen 484 QREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSC 521 (878)
T ss_pred chHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecC
Confidence 3456666788888886533 66667777787665443
No 341
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.93 E-value=6.7e+02 Score=28.87 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=60.7
Q ss_pred HHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHH
Q psy10471 165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAF 244 (318)
Q Consensus 165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~i 244 (318)
+...|..-+...++|++.++-....+++..++.++..+......+=.....--..+++..++..+.. .+..-..++
T Consensus 418 l~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~s----g~~~ev~~a 493 (1426)
T PF14631_consen 418 LDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGS----GNSQEVDAA 493 (1426)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcC----CcHHHHHHH
Confidence 4456666666788999999999999999999999999988887765444200113455555555433 333334678
Q ss_pred HHHHHHHHHHcChhhHHH
Q psy10471 245 MDAVEGLRVALGPVRILQ 262 (318)
Q Consensus 245 i~~i~~i~~alG~~~~~~ 262 (318)
++.+..++.. -++.+.|
T Consensus 494 L~vL~~L~~~-~~~~l~~ 510 (1426)
T PF14631_consen 494 LDVLCELAEK-NPSELQP 510 (1426)
T ss_dssp HHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHhc-cHHHHHH
Confidence 9999999875 3444333
No 342
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=24.76 E-value=1.8e+02 Score=17.89 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=19.7
Q ss_pred hhhHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q psy10471 181 YAVTPLLEDAL-MDRDLVHRQTACATIKHM 209 (318)
Q Consensus 181 ~~iiP~l~~~l-~~~~~~~R~~a~~~i~~l 209 (318)
+.+.-.+..+- ++.|..+|++|..+++.+
T Consensus 4 ~~l~r~Lk~V~~~D~D~lvr~hA~~~Le~L 33 (36)
T PF10304_consen 4 EDLYRTLKYVESTDNDDLVREHAQDALEEL 33 (36)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 33333444333 377899999999998776
No 343
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=24.28 E-value=3e+02 Score=23.35 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=23.6
Q ss_pred HHHHh-hhchHHHHHHHHHHHHHHHhhhCH
Q psy10471 76 LLELL-KAHKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 76 Ll~~L-~d~~~~vR~~av~~lg~la~~igp 104 (318)
+.+.| .|..|+|+-|++.-+..+++..|.
T Consensus 81 iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 81 IIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 33444 778999999999999999998875
No 344
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=23.77 E-value=2.4e+02 Score=22.99 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=35.8
Q ss_pred CCChHhHHHHHHhhc-----------CCCCHHHHHHHHHHHHHHHhhCC-CCCC--hhhHHHHHH
Q psy10471 24 LPHLKNLVEIIEHGL-----------VDEQQKVQENCIDLVGRIADRGP-EYVS--AREWMRICF 74 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l-----------~d~~~~vR~aa~~~LG~la~~~~-~~i~--~~~~~~il~ 74 (318)
.|.++++-..+...- +.-..++||+...++..+|+-+- +|.+ ..+|.+-++
T Consensus 39 ~~~Lk~~f~~~~~~~~~~~~~~~~e~Ka~EQRIRRai~~al~nlAsLGl~Dy~N~~Fe~YA~~lF 103 (134)
T PF08664_consen 39 FPSLKEIFEELAQKKLASDEEIEKEKKAIEQRIRRAIKQALTNLASLGLEDYSNPIFEEYASRLF 103 (134)
T ss_pred CCcHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHHHHHcC
Confidence 578888777775543 11257899999999999999655 4444 366666665
No 345
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.63 E-value=6.7e+02 Score=24.23 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred chHHHHH--HhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc
Q psy10471 142 VLPALMN--EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC 218 (318)
Q Consensus 142 vip~L~~--~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~ 218 (318)
+.|++++ .+-++++.++..+...+..+.++.......-. .++.+.+..+.++--...-.+.-+.++++|..-+
T Consensus 257 ~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p---- 332 (373)
T PF14911_consen 257 VLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDP---- 332 (373)
T ss_pred hhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCH----
Q ss_pred hhHHHHHHHhhhhcccC--------CChHHHHHHHHHHHHH
Q psy10471 219 EDALTHLLNYVWPNIFE--------TSPHLVQAFMDAVEGL 251 (318)
Q Consensus 219 ~~~i~hll~~l~~~i~d--------~~~~vr~~ii~~i~~i 251 (318)
+.+.+++|.+-+.+.+ .+..+|...-.....+
T Consensus 333 -~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~~l 372 (373)
T PF14911_consen 333 -QLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLSHL 372 (373)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhc
No 346
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=8.2e+02 Score=25.21 Aligned_cols=206 Identities=17% Similarity=0.155 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccch--hhHHHHHHHHHHHH-hhcCc---c
Q psy10471 67 REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER--QNRVCTTVAIAIVA-ETCSP---F 140 (318)
Q Consensus 67 ~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~--~~R~~~~~ai~~i~-~~~~p---~ 140 (318)
+|-+|.+..|-+-+++++...|.+|+-.+|..=+.....+++.-|....-+.+. +.-.+++-+++.++ -+|.. +
T Consensus 446 ~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts 525 (881)
T COG5110 446 EERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTS 525 (881)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHH
Confidence 455556554546666666678888888887654444455677777766665554 44445555555443 34432 2
Q ss_pred cchHHHHHHhcCCcchHH--HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc--CC
Q psy10471 141 TVLPALMNEYRVPELNVQ--NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY--GF 216 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~--~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~--~~ 216 (318)
.++..++..-+. +.+.| +...-++...|-.-++...+ ...-+-.+...+ ....+-++.+|. |.
T Consensus 526 ~ilqtf~Er~~~-e~~tqw~RFlaLgLa~Lf~g~~d~~d~-v~eti~aIeg~l-----------s~~~eiLv~~c~Y~GT 592 (881)
T COG5110 526 LILQTFVERGKI-ESETQWFRFLALGLASLFYGRKDQVDD-VEETIMAIEGAL-----------SKHEEILVKGCQYVGT 592 (881)
T ss_pred HHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHccccchhHH-HHHHHHHhcchh-----------hhhHHHHHhhceeccc
Confidence 555566554432 22333 33333444444322211111 111112222222 222233334443 23
Q ss_pred CchhHHHHHHHhhhhcccCC----ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh---cc-ccccchHHHHHHHHHhh
Q psy10471 217 GCEDALTHLLNYVWPNIFET----SPHLVQAFMDAVEGLRVALGPVRILQYVLQGL---FH-PARKVRDVYWKIYNSLY 287 (318)
Q Consensus 217 ~~~~~i~hll~~l~~~i~d~----~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l---~~-~a~~~r~~~w~i~~~~~ 287 (318)
|..-.++.++.. .+-++. +.+-......+++..-.++|.|.=.+-+++.+ +| .+...|...--.|.-+|
T Consensus 593 Gdvl~Iq~lLhv--~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils 669 (881)
T COG5110 593 GDVLVIQSLLHV--KDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILS 669 (881)
T ss_pred CcHHHHHHHHhc--cCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhccc
Confidence 444566666552 111111 22333345777788888899988666666665 33 44445544443343333
No 347
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=23.49 E-value=3.1e+02 Score=22.14 Aligned_cols=44 Identities=18% Similarity=0.433 Sum_probs=31.5
Q ss_pred HhHHHHHHhhcCCCC-HH-HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q psy10471 28 KNLVEIIEHGLVDEQ-QK-VQENCIDLVGRIADRGPEYVSAREWMRICFEL 76 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~-~~-vR~aa~~~LG~la~~~~~~i~~~~~~~il~~L 76 (318)
+.+|..++.+|+|++ |. ..+.+++-+|-.|+.+++ -|..+.+..
T Consensus 66 ~~~m~~l~~aL~dp~Is~erK~~~l~yIaSya~~c~p-----TW~evi~re 111 (126)
T PF07560_consen 66 RSTMHQLIKALQDPTISKERKREALNYIASYADACPP-----TWVEVIFRE 111 (126)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhccCch-----hHHHHHHHH
Confidence 456677889999987 33 367888888888886654 566666643
No 348
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.31 E-value=4.7e+02 Score=27.34 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHh
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~ 100 (318)
.||-+.++..+-..+.+ +..|-.++..||.+....++.+-.-.-.+++..||..|+- .+..+=..|+.++..+--
T Consensus 65 ~P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 65 EPHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 57777788887777764 6789999999999999877644212223566667777666 455566677777766544
No 349
>KOG1048|consensus
Probab=22.23 E-value=1.9e+02 Score=30.41 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=40.6
Q ss_pred cCCChHhH--HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHHHhhh-chHHHHHH
Q psy10471 23 ILPHLKNL--VEIIEHGLVDEQQKVQENCIDLVGRIADRGP---EYVSAREWMRICFELLELLKA-HKKAIRRA 90 (318)
Q Consensus 23 ~~P~l~~l--~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~ 90 (318)
++--+.++ +|.++.+|+.++..|+++|+.+|-.|.-+.. ..+.+++...|.. +++.|+. .+..+|..
T Consensus 267 ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~-l~~~Lr~t~D~ev~e~ 339 (717)
T KOG1048|consen 267 IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPT-LVRLLRHTQDDEVREL 339 (717)
T ss_pred HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHH-HHHHHHhhcchHHHHH
Confidence 33344443 4557888899999999999999999985332 3333333333322 4444443 34455544
No 350
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=21.88 E-value=7.4e+02 Score=24.02 Aligned_cols=126 Identities=9% Similarity=0.025 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCC
Q psy10471 158 QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETS 237 (318)
Q Consensus 158 ~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~ 237 (318)
+.....++.++++. + ..+...++-.+.+.|=..+..=.-....-++.+.+.+....+...+..+..++-.++..++
T Consensus 235 ~~~L~~~~~~f~~k-d---p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 235 HQQLSYCVVQFLEK-D---PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHh-C---chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666666666652 1 2233455556666664444444445556666665555433444566666677666766666
Q ss_pred hHHHHHHHHHHHH--HHHHc--ChhhHHHhHHHHhcc-----ccccchHHHHHHHHHhh
Q psy10471 238 PHLVQAFMDAVEG--LRVAL--GPVRILQYVLQGLFH-----PARKVRDVYWKIYNSLY 287 (318)
Q Consensus 238 ~~vr~~ii~~i~~--i~~al--G~~~~~~~vl~~l~~-----~a~~~r~~~w~i~~~~~ 287 (318)
-.|-..++..+.. +...+ ..+...|.+.|.+.. =++.+|+.--.++..+.
T Consensus 311 ~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 311 FQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp HHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6665555543322 12222 125578888888754 33446665555554443
No 351
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=21.75 E-value=6.2e+02 Score=23.14 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch
Q psy10471 85 KAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER 120 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~ 120 (318)
...|-..+..+|.+.+.-+++ ++++-.++++...+.
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gse 153 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSE 153 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-H
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccH
Confidence 347888888888888754543 345555556654443
No 352
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=21.58 E-value=9.6e+02 Score=25.25 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=50.8
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC-CCC--h----hhHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE-YVS--A----REWMRICFELLELLKAHKKAIRRATVNTFGYI 98 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~-~i~--~----~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~l 98 (318)
+++.++..+-+.+...|.+|+.-||.+.=.+++.++. ++. . +.+..|+..|-..-.|-.+...+...+++|.+
T Consensus 567 FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~v 646 (1053)
T COG5101 567 FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMV 646 (1053)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHH
Confidence 4567777788888888999999999999999998883 111 1 22233333222222223556667788888887
Q ss_pred HhhhC
Q psy10471 99 AKAIG 103 (318)
Q Consensus 99 a~~ig 103 (318)
.....
T Consensus 647 Ise~p 651 (1053)
T COG5101 647 ISEVP 651 (1053)
T ss_pred Hhccc
Confidence 65443
No 353
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=21.43 E-value=1.8e+02 Score=29.69 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=28.3
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP 61 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~ 61 (318)
+.+-.++--+|+|+|+-++.-|+.+.|++|+.+.
T Consensus 522 ~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 522 PALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 3444455678899999999999999999999775
No 354
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=21.14 E-value=6.9e+02 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHccccccchhh-hHHHHHHHHh
Q psy10471 159 NGVLKALSFLFEYIGEMGKDYIYA-VTPLLEDALM 192 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~~~~yl~~-iiP~l~~~l~ 192 (318)
..+-+++....+..| .+|+.. +=|.+.++..
T Consensus 77 SlaTK~m~~y~k~~G---~~YL~~tL~pvI~~i~~ 108 (310)
T cd05134 77 SLTSKCIDETMKLAG---MHYLQVTLKPIIDEICQ 108 (310)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHc
Confidence 567788888888888 789976 4466666663
No 355
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=20.96 E-value=5.7e+02 Score=22.41 Aligned_cols=118 Identities=5% Similarity=0.142 Sum_probs=74.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhhCHHH----HH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIGPHD----VL 108 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~la~~igp~~----~l 108 (318)
+...|...++.+|..|+++|...-.......+..+++.++.+|.-.+ -.+++-++++....++.+...+.+.. .+
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f~ 84 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLFL 84 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 45566777899999999999987654443323567777777665443 33566688888888888887766541 23
Q ss_pred HHHHHhhc----------ccch--hhHHHHHHHHHHHHhhcCcccchHHHHHHhc
Q psy10471 109 ATLLNNLK----------VQER--QNRVCTTVAIAIVAETCSPFTVLPALMNEYR 151 (318)
Q Consensus 109 ~~Ll~~Lk----------~~~~--~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~ 151 (318)
.+++..+. .... =+|.++..++..+....-+..++..+.+.+.
T Consensus 85 ~~f~~tm~rEW~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~ 139 (217)
T PF05997_consen 85 KAFWETMRREWDGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILS 139 (217)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44444432 1111 3577777777666655445566666666554
No 356
>KOG0803|consensus
Probab=20.67 E-value=1.3e+03 Score=26.40 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=41.6
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHH
Q psy10471 150 YRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATI 206 (318)
Q Consensus 150 ~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i 206 (318)
..|++..||...-+.+......++.+..||+..++|...-..-|.+..+-+.|-+..
T Consensus 92 ~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf 148 (1312)
T KOG0803|consen 92 IIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASF 148 (1312)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHH
Confidence 356777788777788888888888888899988888877666566655555555544
No 357
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=20.58 E-value=8.2e+02 Score=24.06 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=44.2
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHH-HHHhhcCCCCHHHHHHHHHHHHHHHhhCCC
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVE-IIEHGLVDEQQKVQENCIDLVGRIADRGPE 62 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~-~l~~~l~d~~~~vR~aa~~~LG~la~~~~~ 62 (318)
+.|..+.+++|.+..... .+-+..+.. .+.+.|+..+..-|..|...+...|.....
T Consensus 102 r~Ri~aA~ALG~l~~~~~---~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~ 159 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWP---ESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKE 159 (441)
T ss_pred HHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCcc
Confidence 468899999999998663 344445554 588888888888899999999999986654
No 358
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=20.52 E-value=3.2e+02 Score=20.66 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCChHhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHhhh
Q psy10471 24 LPHLKNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLKA 82 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~L~d 82 (318)
.+|+..++..+...++ ...+.+.....|.-.-+-..++...+. +++.+.+..|.+.++.
T Consensus 27 ~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~ 87 (110)
T PF04003_consen 27 FSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRE 87 (110)
T ss_pred HHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4566677777777666 445556666555555555444433333 5566666655555554
No 359
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=20.23 E-value=9.2e+02 Score=24.51 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=24.4
Q ss_pred ChHhHHHHHHhhcCCC-CHHHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLVDE-QQKVQENCIDLVGRI 56 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~-~~~vR~aa~~~LG~l 56 (318)
-+++++..+.+.+.+. .-+.+.+|++.||.+
T Consensus 94 ~lnevir~ltqvis~sg~iglQsn~~wlLGhL 125 (589)
T PF11229_consen 94 RLNEVIRTLTQVISFSGVIGLQSNAAWLLGHL 125 (589)
T ss_pred HHHHHHHHHHHHHcCccccccccchHHHHHHH
Confidence 5677888888888774 477789999999975
No 360
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=20.10 E-value=2.8e+02 Score=21.19 Aligned_cols=39 Identities=5% Similarity=-0.048 Sum_probs=34.0
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
..+|++.++..+..++++=.+.+|.-+...+..+.+.+.
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p 43 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAP 43 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCC
Confidence 467889999999999999999999999999887776664
No 361
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.09 E-value=4e+02 Score=20.21 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHhhh-chH-HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchH
Q psy10471 67 REWMRICFELLELLKA-HKK-AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144 (318)
Q Consensus 67 ~~~~~il~~Ll~~L~d-~~~-~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip 144 (318)
+.+-..+..|-++.+| .-+ .+||+|-++.-.+-+. .++-.+|.++++++
T Consensus 13 e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e---------------~e~p~vRaAtaIsi-------------- 63 (93)
T COG1698 13 EKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNE---------------GESPAVRAATAISI-------------- 63 (93)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCC---------------CCCchhHHHHHHHH--------------
Confidence 3344444444466688 333 4999987776554431 11224666666655
Q ss_pred HHHHHhcCCcchHH
Q psy10471 145 ALMNEYRVPELNVQ 158 (318)
Q Consensus 145 ~L~~~~~d~~~~v~ 158 (318)
|-.+-.||+.-.|
T Consensus 64 -LeeisnDPNmP~h 76 (93)
T COG1698 64 -LEEISNDPNMPLH 76 (93)
T ss_pred -HHHHhcCCCCchH
Confidence 6666677765443
Done!