Query psy10471
Match_columns 318
No_of_seqs 173 out of 508
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 19:04:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.9 5.6E-21 1.9E-25 198.4 21.8 296 3-301 374-712 (852)
2 1b3u_A Protein (protein phosph 99.9 2.6E-20 8.9E-25 183.7 21.0 272 5-284 298-583 (588)
3 1b3u_A Protein (protein phosph 99.8 1.5E-20 5.1E-25 185.4 17.8 270 5-283 143-426 (588)
4 2bpt_A Importin beta-1 subunit 99.8 4E-20 1.4E-24 190.6 21.0 297 3-301 384-724 (861)
5 2bpt_A Importin beta-1 subunit 99.8 5.8E-18 2E-22 174.4 26.2 262 5-269 428-729 (861)
6 4fdd_A Transportin-1; heat rep 99.8 4.4E-18 1.5E-22 176.6 24.5 293 5-300 417-754 (852)
7 1qgr_A Protein (importin beta 99.8 1.7E-18 6E-23 178.6 20.5 296 4-301 382-735 (876)
8 1u6g_C TIP120 protein, CAND1; 99.7 2.5E-16 8.4E-21 169.4 23.0 298 3-301 229-611 (1230)
9 1qgr_A Protein (importin beta 99.7 3.4E-16 1.2E-20 161.4 22.9 292 4-300 344-691 (876)
10 1u6g_C TIP120 protein, CAND1; 99.7 2.5E-15 8.6E-20 161.6 29.4 294 5-301 391-734 (1230)
11 1ibr_B P95, importin beta-1 su 99.7 4.1E-15 1.4E-19 142.1 23.1 264 4-270 146-458 (462)
12 1ibr_B P95, importin beta-1 su 99.6 2.7E-14 9.2E-19 136.4 24.0 270 6-282 107-432 (462)
13 2qk1_A Protein STU2; STU2P, XM 99.6 1.3E-14 4.5E-19 130.1 19.8 206 33-267 20-234 (249)
14 2qk2_A LP04448P; mini spindles 99.6 2.1E-14 7.3E-19 127.3 19.9 182 32-214 18-208 (242)
15 2qk2_A LP04448P; mini spindles 99.6 4.8E-14 1.6E-18 125.0 19.4 187 3-190 30-226 (242)
16 2jdq_A Importin alpha-1 subuni 99.5 5.1E-13 1.7E-17 127.4 19.9 282 5-287 124-442 (450)
17 2qk1_A Protein STU2; STU2P, XM 99.5 8.8E-13 3E-17 118.1 18.6 179 3-183 31-234 (249)
18 2jdq_A Importin alpha-1 subuni 99.5 2.1E-13 7.3E-18 130.0 15.4 280 5-287 82-390 (450)
19 1oyz_A Hypothetical protein YI 99.5 5.6E-12 1.9E-16 113.5 23.0 164 29-209 54-219 (280)
20 1oyz_A Hypothetical protein YI 99.5 3.1E-12 1.1E-16 115.2 21.2 220 31-286 25-248 (280)
21 1wa5_B Importin alpha subunit; 99.5 6.9E-12 2.4E-16 123.2 22.2 282 5-287 190-509 (530)
22 1wa5_B Importin alpha subunit; 99.4 2.3E-12 7.8E-17 126.6 18.0 254 29-287 130-412 (530)
23 4b8j_A Importin subunit alpha- 99.4 6.3E-12 2.1E-16 123.2 20.3 293 5-300 177-509 (528)
24 3ltj_A Alpharep-4; protein eng 99.4 5.4E-12 1.8E-16 108.0 17.2 190 23-252 8-197 (201)
25 3ltm_A Alpha-REP4; protein eng 99.4 3.3E-12 1.1E-16 110.2 15.8 189 28-256 18-206 (211)
26 4hxt_A De novo protein OR329; 99.4 3.2E-12 1.1E-16 112.1 13.4 226 30-259 3-247 (252)
27 4b8j_A Importin subunit alpha- 99.4 8.2E-12 2.8E-16 122.4 16.9 275 5-288 91-401 (528)
28 3ltm_A Alpha-REP4; protein eng 99.3 2.8E-11 9.7E-16 104.3 15.0 157 28-213 49-205 (211)
29 3ltj_A Alpharep-4; protein eng 99.3 3.5E-11 1.2E-15 102.9 15.2 154 29-211 45-198 (201)
30 3ul1_B Importin subunit alpha- 99.3 5.7E-11 1.9E-15 116.7 18.0 282 2-288 68-388 (510)
31 2x1g_F Cadmus; transport prote 99.3 1.7E-10 5.7E-15 121.3 21.3 246 3-258 479-765 (971)
32 3tpo_A Importin subunit alpha- 99.3 2.3E-10 8E-15 112.6 20.1 285 2-289 87-408 (529)
33 1wa5_C Importin alpha RE-expor 99.2 2.3E-10 7.9E-15 120.4 19.8 249 4-255 377-672 (960)
34 1wa5_C Importin alpha RE-expor 99.2 3.9E-10 1.3E-14 118.7 20.6 245 3-254 420-711 (960)
35 2vgl_B AP-2 complex subunit be 99.2 6E-10 2.1E-14 111.3 20.7 266 5-286 138-417 (591)
36 4db8_A Armadillo-repeat protei 99.2 3.5E-11 1.2E-15 106.1 9.0 217 31-252 14-250 (252)
37 4db6_A Armadillo repeat protei 99.2 8.6E-11 2.9E-15 100.8 11.0 180 29-211 12-209 (210)
38 4db8_A Armadillo-repeat protei 99.2 6.8E-11 2.3E-15 104.2 10.3 205 4-210 28-250 (252)
39 3ul1_B Importin subunit alpha- 99.2 1.4E-09 4.7E-14 106.8 19.7 294 5-301 160-491 (510)
40 3tpo_A Importin subunit alpha- 99.2 3.5E-09 1.2E-13 104.2 22.1 244 5-254 179-450 (529)
41 4hxt_A De novo protein OR329; 99.1 1.5E-09 5.1E-14 94.9 16.5 212 73-287 4-241 (252)
42 2x19_B Importin-13; nuclear tr 99.1 4.8E-09 1.7E-13 109.8 21.5 258 5-269 424-732 (963)
43 2x1g_F Cadmus; transport prote 99.1 5.2E-09 1.8E-13 109.9 19.7 257 5-269 438-740 (971)
44 2db0_A 253AA long hypothetical 99.1 8.9E-08 3E-12 80.7 22.8 216 23-254 26-247 (253)
45 2vgl_B AP-2 complex subunit be 99.1 1.5E-08 5.2E-13 101.1 21.6 278 7-301 33-324 (591)
46 2x19_B Importin-13; nuclear tr 99.0 1.2E-08 4.1E-13 106.8 21.2 277 4-289 465-803 (963)
47 1w63_A Adapter-related protein 99.0 1E-08 3.5E-13 103.0 19.6 172 83-268 246-431 (618)
48 1w63_A Adapter-related protein 99.0 9.9E-08 3.4E-12 95.8 22.9 264 30-304 314-595 (618)
49 1xqr_A HSPBP1 protein; armadil 98.9 9.2E-09 3.1E-13 94.3 13.8 176 4-212 56-239 (296)
50 4hat_C Exportin-1; heat repeat 98.9 8.5E-09 2.9E-13 109.1 14.4 282 4-289 469-834 (1023)
51 2z6g_A B-catenin; FULL-length, 98.9 1.7E-08 5.7E-13 104.1 16.1 261 4-270 166-452 (780)
52 1jdh_A Beta-catenin; beta-cate 98.9 1.5E-07 5E-12 91.4 20.8 240 29-277 227-519 (529)
53 2iw3_A Elongation factor 3A; a 98.9 1.8E-07 6.3E-12 97.7 21.9 227 22-257 49-328 (986)
54 3now_A UNC-45 protein, SD10334 98.9 6.3E-07 2.1E-11 92.2 25.1 275 6-287 308-652 (810)
55 2z6h_A Catenin beta-1, beta-ca 98.9 2.4E-07 8.3E-12 93.1 21.6 246 29-277 14-281 (644)
56 2z6g_A B-catenin; FULL-length, 98.8 3.7E-07 1.3E-11 94.1 22.4 241 29-277 360-652 (780)
57 4db6_A Armadillo repeat protei 98.8 3.3E-08 1.1E-12 84.4 12.2 175 76-252 17-208 (210)
58 1jdh_A Beta-catenin; beta-cate 98.8 2.7E-07 9.3E-12 89.4 19.8 246 28-277 16-284 (529)
59 2z6h_A Catenin beta-1, beta-ca 98.8 8.5E-08 2.9E-12 96.4 16.4 244 4-253 30-292 (644)
60 3now_A UNC-45 protein, SD10334 98.8 1.1E-07 3.7E-12 97.9 16.7 222 29-253 495-737 (810)
61 3nmw_A APC variant protein; AR 98.8 2.5E-07 8.7E-12 86.7 17.5 248 3-254 47-335 (354)
62 3m1i_C Exportin-1; heat repeat 98.8 5E-08 1.7E-12 103.6 14.1 187 3-191 468-697 (1049)
63 2vgl_A Adaptor protein complex 98.8 7.6E-07 2.6E-11 89.5 21.8 246 5-269 128-451 (621)
64 3ibv_A Exportin-T; karyopherin 98.8 1.4E-07 4.7E-12 99.6 16.8 250 3-258 458-773 (980)
65 2of3_A ZYG-9; multifunctional 98.7 7.2E-07 2.4E-11 80.1 18.2 188 5-192 63-258 (266)
66 2vgl_A Adaptor protein complex 98.7 1.2E-06 4.1E-11 88.1 21.0 269 26-304 326-608 (621)
67 4hat_C Exportin-1; heat repeat 98.7 3.4E-07 1.2E-11 96.9 16.5 215 10-259 435-682 (1023)
68 4ady_A RPN2, 26S proteasome re 98.7 3.6E-06 1.2E-10 87.4 23.1 259 5-293 412-681 (963)
69 1te4_A Conserved protein MTH18 98.6 4E-09 1.4E-13 84.4 0.2 125 23-167 6-130 (131)
70 3nmz_A APC variant protein; pr 98.6 1.1E-06 3.6E-11 85.2 17.2 245 6-254 166-451 (458)
71 1xqr_A HSPBP1 protein; armadil 98.6 7.4E-07 2.5E-11 81.5 15.2 197 25-254 24-239 (296)
72 4ffb_C Protein STU2; tubulin f 98.6 3.8E-06 1.3E-10 75.6 18.2 177 34-213 14-214 (278)
73 3b2a_A TON_1937, putative unch 98.5 1.9E-05 6.3E-10 69.1 20.6 182 28-212 32-219 (265)
74 4ady_A RPN2, 26S proteasome re 98.5 2.9E-06 9.9E-11 88.0 18.0 202 28-253 471-676 (963)
75 1xm9_A Plakophilin 1; armadill 98.5 2.8E-06 9.7E-11 82.0 16.2 175 31-210 4-219 (457)
76 3m1i_C Exportin-1; heat repeat 98.5 3.7E-06 1.3E-10 89.1 17.8 218 7-259 432-682 (1049)
77 2iw3_A Elongation factor 3A; a 98.5 1.6E-05 5.6E-10 83.1 21.6 203 6-213 70-326 (986)
78 3nmw_A APC variant protein; AR 98.4 3E-06 1E-10 79.4 14.5 205 5-213 101-336 (354)
79 3nmz_A APC variant protein; pr 98.4 7.3E-06 2.5E-10 79.3 15.4 204 5-212 217-451 (458)
80 1xm9_A Plakophilin 1; armadill 98.4 5.3E-05 1.8E-09 73.0 21.4 270 5-282 61-444 (457)
81 3gjx_A Exportin-1; transport, 98.3 4.7E-05 1.6E-09 80.8 22.0 184 5-191 496-723 (1073)
82 1te4_A Conserved protein MTH18 98.3 2E-06 6.8E-11 68.4 7.7 86 31-131 44-129 (131)
83 4ffb_C Protein STU2; tubulin f 98.2 6E-05 2.1E-09 67.6 16.4 172 4-175 25-217 (278)
84 3ibv_A Exportin-T; karyopherin 98.2 4.7E-05 1.6E-09 80.3 17.4 261 10-270 420-749 (980)
85 3l6x_A Catenin delta-1; cateni 98.2 0.00025 8.4E-09 70.5 21.6 256 24-283 43-379 (584)
86 3tjz_B Coatomer subunit gamma; 98.1 0.00013 4.4E-09 68.2 16.5 185 22-253 15-205 (355)
87 2of3_A ZYG-9; multifunctional 98.0 0.00091 3.1E-08 59.9 20.5 163 40-211 57-236 (266)
88 3opb_A SWI5-dependent HO expre 98.0 0.00034 1.2E-08 71.3 18.9 222 29-253 457-728 (778)
89 3gjx_A Exportin-1; transport, 98.0 0.00021 7.2E-09 75.8 17.9 197 41-268 491-719 (1073)
90 2db0_A 253AA long hypothetical 97.8 0.0009 3.1E-08 56.5 15.7 202 71-283 32-245 (253)
91 3oc3_A Helicase MOT1, MOT1; re 97.7 0.0009 3.1E-08 65.4 15.3 232 30-277 175-425 (800)
92 3l6x_A Catenin delta-1; cateni 97.7 0.0015 5.3E-08 64.8 17.2 171 41-211 253-476 (584)
93 3l9t_A Putative uncharacterize 97.6 0.0038 1.3E-07 54.6 17.4 139 66-212 69-208 (240)
94 3b2a_A TON_1937, putative unch 97.6 0.0083 2.8E-07 52.4 18.2 173 72-254 34-219 (265)
95 3l9t_A Putative uncharacterize 97.5 0.00035 1.2E-08 61.2 8.9 135 27-171 69-208 (240)
96 3tjz_B Coatomer subunit gamma; 97.5 0.0002 6.8E-09 66.9 7.2 222 5-248 121-348 (355)
97 3oc3_A Helicase MOT1, MOT1; re 97.4 0.0082 2.8E-07 58.8 17.5 224 4-249 190-432 (800)
98 3tt9_A Plakophilin-2; cell adh 97.3 0.0043 1.5E-07 54.4 13.7 153 29-211 8-180 (233)
99 3a6p_A Exportin-5; exportin-5, 97.2 0.051 1.7E-06 58.5 23.4 127 24-152 523-682 (1204)
100 3opb_A SWI5-dependent HO expre 97.2 0.0078 2.7E-07 61.3 15.9 209 4-214 473-731 (778)
101 1lrv_A LRV, leucine-rich repea 97.1 9.5E-05 3.3E-09 65.5 0.3 138 35-247 56-193 (244)
102 3u0r_A Apoptosis inhibitor 5; 96.8 0.33 1.1E-05 46.6 21.8 99 29-138 65-163 (507)
103 3tt9_A Plakophilin-2; cell adh 96.5 0.048 1.7E-06 47.6 13.5 149 74-253 11-180 (233)
104 4gmo_A Putative uncharacterize 96.5 0.0069 2.4E-07 61.3 8.8 86 29-116 35-129 (684)
105 1lrv_A LRV, leucine-rich repea 96.4 0.0012 4E-08 58.5 2.4 141 34-249 79-219 (244)
106 4atg_A TAF6; transcription, TF 96.4 0.13 4.4E-06 43.7 14.7 107 159-268 64-173 (196)
107 4gmo_A Putative uncharacterize 95.8 0.16 5.4E-06 51.2 14.6 186 3-191 49-285 (684)
108 3a6p_A Exportin-5; exportin-5, 94.7 0.56 1.9E-05 50.4 15.5 102 155-259 598-703 (1204)
109 1lsh_A Lipovitellin (LV-1N, LV 94.6 0.61 2.1E-05 49.4 15.4 175 25-213 387-578 (1056)
110 3grl_A General vesicular trans 93.2 2.3 8E-05 42.3 15.4 175 23-213 15-197 (651)
111 4atg_A TAF6; transcription, TF 92.9 0.9 3.1E-05 38.4 10.5 103 9-116 67-174 (196)
112 1lsh_A Lipovitellin (LV-1N, LV 92.8 2.7 9.1E-05 44.5 16.4 173 67-259 390-582 (1056)
113 3u0r_A Apoptosis inhibitor 5; 92.4 8.1 0.00028 37.1 19.2 178 23-208 24-203 (507)
114 1w9c_A CRM1 protein, exportin 91.1 8.6 0.0003 34.9 18.8 142 146-287 78-244 (321)
115 3gs3_A Symplekin, LD45768P; he 87.0 3.6 0.00012 36.2 9.6 71 177-252 48-118 (257)
116 3gs3_A Symplekin, LD45768P; he 86.9 15 0.00052 32.1 15.7 133 5-172 32-175 (257)
117 1vsy_5 Proteasome activator BL 84.2 2.6 9E-05 44.3 8.5 164 24-209 792-964 (997)
118 3grl_A General vesicular trans 83.9 8.1 0.00028 38.5 11.3 72 181-253 121-195 (651)
119 1vsy_4 Proteasome activator BL 83.2 43 0.0015 34.2 17.7 73 26-102 336-414 (799)
120 3o2t_A Symplekin; heat repeat, 81.2 11 0.00039 35.0 10.7 69 178-251 59-127 (386)
121 3ldz_A STAM-1, signal transduc 73.4 26 0.00091 27.4 9.5 77 181-258 41-119 (140)
122 3ldz_A STAM-1, signal transduc 72.4 20 0.00067 28.2 8.5 74 141-214 42-117 (140)
123 3o2t_A Symplekin; heat repeat, 69.1 73 0.0025 29.5 17.0 111 141-255 63-185 (386)
124 1x5b_A Signal transducing adap 68.4 33 0.0011 27.7 9.1 88 26-116 49-144 (163)
125 1w9c_A CRM1 protein, exportin 67.4 71 0.0024 28.8 14.9 128 155-285 43-193 (321)
126 1upk_A MO25 protein; transfera 67.3 20 0.00068 32.7 8.3 85 26-113 206-297 (341)
127 1ho8_A Vacuolar ATP synthase s 62.8 6.7 0.00023 37.6 4.4 71 29-99 395-475 (480)
128 1x5b_A Signal transducing adap 61.1 58 0.002 26.1 9.3 73 142-214 53-128 (163)
129 3zyq_A Hepatocyte growth facto 60.6 53 0.0018 27.8 9.5 76 139-214 43-121 (226)
130 1sz9_A PCF11 protein; RNA poly 60.0 41 0.0014 26.5 8.0 66 145-210 47-113 (144)
131 2b6c_A Hypothetical protein EF 59.3 59 0.002 27.2 9.5 52 79-130 132-183 (220)
132 3g2s_A C-terminal fragment of 56.0 74 0.0025 25.2 11.1 92 165-257 32-130 (149)
133 2fv2_A RCD1 required for cell 55.3 1.1E+02 0.0037 26.8 12.8 125 85-209 15-172 (268)
134 3g2s_A C-terminal fragment of 54.0 32 0.0011 27.3 6.5 75 140-214 47-129 (149)
135 2b6c_A Hypothetical protein EF 52.5 39 0.0013 28.4 7.2 92 12-111 107-198 (220)
136 1vsy_4 Proteasome activator BL 51.2 2.1E+02 0.0073 29.1 14.5 84 218-301 513-605 (799)
137 1vsy_5 Proteasome activator BL 50.3 16 0.00053 38.5 5.1 55 44-99 910-965 (997)
138 1dvp_A HRS, hepatocyte growth 50.1 77 0.0026 26.6 8.7 74 141-214 42-118 (220)
139 1mhq_A ADP-ribosylation factor 49.2 33 0.0011 27.2 5.8 74 141-214 38-119 (148)
140 3jxy_A Alkylpurine DNA glycosy 47.5 49 0.0017 28.0 7.1 86 41-134 108-194 (232)
141 1mhq_A ADP-ribosylation factor 45.1 1.1E+02 0.0038 24.0 11.0 75 182-257 38-120 (148)
142 1juq_A ADP-ribosylation factor 44.5 79 0.0027 25.6 7.6 74 27-103 48-131 (171)
143 1dvp_A HRS, hepatocyte growth 43.7 95 0.0033 26.0 8.3 75 26-103 39-118 (220)
144 1juq_A ADP-ribosylation factor 42.5 55 0.0019 26.5 6.3 73 141-213 50-130 (171)
145 3zyq_A Hepatocyte growth facto 38.7 1.8E+02 0.006 24.5 11.5 75 181-258 44-123 (226)
146 4f52_E Glomulin; cullin-ring E 35.9 2.5E+02 0.0085 27.4 10.9 84 32-115 320-413 (596)
147 1elk_A Target of MYB1; superhe 34.3 1.7E+02 0.0058 23.1 8.0 72 143-214 55-133 (157)
148 1elk_A Target of MYB1; superhe 31.2 1.6E+02 0.0055 23.2 7.3 76 26-103 50-133 (157)
149 3fga_B Serine/threonine-protei 30.3 3.3E+02 0.011 25.2 12.3 46 219-268 250-295 (403)
150 3eg5_B Protein diaphanous homo 28.6 2.5E+02 0.0086 25.6 9.1 103 155-257 134-250 (383)
151 1vdy_A Hypothetical protein (R 28.5 1.4E+02 0.0048 23.4 6.3 50 11-62 31-82 (140)
152 2rg8_A Programmed cell death p 27.6 1.5E+02 0.0052 23.6 6.6 55 25-82 40-94 (165)
153 1t06_A Hypothetical protein; s 25.5 2.4E+02 0.0084 23.6 7.9 69 30-101 109-181 (235)
154 2f31_A Diaphanous protein homo 23.1 2.6E+02 0.0087 23.4 7.6 100 156-255 69-182 (233)
155 3jxy_A Alkylpurine DNA glycosy 21.8 1.2E+02 0.0041 25.5 5.1 76 30-113 132-207 (232)
156 1vdy_A Hypothetical protein (R 20.1 64 0.0022 25.4 2.7 69 141-209 49-128 (140)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.87 E-value=5.6e-21 Score=198.40 Aligned_cols=296 Identities=17% Similarity=0.132 Sum_probs=224.3
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
+.|++++.++|.++...+..+.||+++++|.+.+.++|+++.||.+|++++|++++..++......+.+++..|++.++|
T Consensus 374 ~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 374 VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence 46899999999999865557889999999999999999999999999999999998654322244566777778888899
Q ss_pred chHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------c--cchHHHHH
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------F--TVLPALMN 148 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~--~vip~L~~ 148 (318)
+++.+|..|.++++.+++..++ + .+++.|++.++..+......+..+++.+++..++ | .++|.+++
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~ 533 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 533 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 8899999999999999987764 3 5677777777755545555678888888765543 2 68898885
Q ss_pred ---HhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC-----------------CHHHHHHHHHHHHH
Q psy10471 149 ---EYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR-----------------DLVHRQTACATIKH 208 (318)
Q Consensus 149 ---~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~-----------------~~~~R~~a~~~i~~ 208 (318)
.++|++.+++ .++++++.+++.+|..+.+|++.++|.+.+.+++. +..+|..+.++++.
T Consensus 534 ~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~ 612 (852)
T 4fdd_A 534 KWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG 612 (852)
T ss_dssp HHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH
T ss_pred HHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHH
Confidence 4567777774 79999999999999999999999999777776432 56789999999999
Q ss_pred HhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc----cccccch-HHH
Q psy10471 209 MALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF----HPARKVR-DVY 279 (318)
Q Consensus 209 la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~----~~a~~~r-~~~ 279 (318)
++..++ ..+...+ ..+++.++..+.++++++|+.+..+++.++.+.|.++ +.+.++|.+. ++...+| ++-
T Consensus 613 l~~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~ 691 (852)
T 4fdd_A 613 LAEGLG-GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT 691 (852)
T ss_dssp HHHHHG-GGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHH
T ss_pred HHHHHh-HhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 999884 3333333 3567777777777889999999999999999999743 4445555552 2333343 366
Q ss_pred HHHHHHhhccccccccccCCCC
Q psy10471 280 WKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 280 w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
|.+..-. ...++.+.||++.+
T Consensus 692 ~alg~i~-~~~~~~~~p~~~~i 712 (852)
T 4fdd_A 692 WAIGEIS-IQMGIEMQPYIPMV 712 (852)
T ss_dssp HHHHHHH-HHHGGGGGGGTHHH
T ss_pred HHHHHHH-HHhhHhHHHHHHHH
Confidence 6654322 22234688886543
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.85 E-value=2.6e-20 Score=183.70 Aligned_cols=272 Identities=12% Similarity=0.090 Sum_probs=222.8
Q ss_pred hhhHHHHHHHHHHHhccCcC--CChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 5 KNLGIKIVQQIAILMGCAIL--PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~--P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
|..+..+++.++...|.... ++++.++|.+...++|+++.||.+++++||.++...|.....+.+.|+ +++.++|
T Consensus 298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~---l~~~l~d 374 (588)
T 1b3u_A 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL---FLAQLKD 374 (588)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHH---HHHHHTC
T ss_pred HHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH---HHHHhCC
Confidence 67888899999987766543 678999999999999999999999999999999876542112344444 4466789
Q ss_pred chHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCc
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPE 154 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~ 154 (318)
+++.||..++.+++.+.+.+|+. .+++.+...+++++.++|..++.+++.++..+++ -.++|.+++.++|++
T Consensus 375 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 454 (588)
T 1b3u_A 375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV 454 (588)
T ss_dssp SCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS
T ss_pred CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc
Confidence 88899999999999999988864 3567777777776778999999999988877664 268899999999999
Q ss_pred chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF 234 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~ 234 (318)
.+++..+++++..+++.+|.. .+.+.++|.+.+++.+.+..+|..++.+++.++..+ |.+....++++.++..+.
T Consensus 455 ~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~ 529 (588)
T 1b3u_A 455 YAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC---GQDITTKHMLPTVLRMAG 529 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHTHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhCC
Confidence 999999999999999999874 357889999999999999999999999999998876 445566778888888888
Q ss_pred CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc----ccccchHHHHHHHH
Q psy10471 235 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH----PARKVRDVYWKIYN 284 (318)
Q Consensus 235 d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~----~a~~~r~~~w~i~~ 284 (318)
|++++||..++.+++.++..+|.+++.+.++|.+.. .+..||+.-...++
T Consensus 530 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 530 DPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp CSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 999999999999999999999998877788887732 34455554444443
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.85 E-value=1.5e-20 Score=185.40 Aligned_cols=270 Identities=14% Similarity=0.175 Sum_probs=213.3
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|+++..+++.++...|.. ..+.++|.+...++|+++.||.+|+.++|.+++..+......++.|. ++..++|++
T Consensus 143 R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~---l~~~~~d~~ 216 (588)
T 1b3u_A 143 RTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM---FSNLASDEQ 216 (588)
T ss_dssp HHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHH---HHHHHTCSC
T ss_pred HHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHH---HHHHhcCCc
Confidence 566666666666544322 35678888889999999999999999999999876532102344444 456668988
Q ss_pred HHHHHHHHHHHHHHHhhhCHHH----HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcch
Q psy10471 85 KAIRRATVNTFGYIAKAIGPHD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELN 156 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~igp~~----~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~ 156 (318)
..+|..|+++++.+++.+++.. +++.+.+.+++++.++|..++.+++.++..+++ ..++|.+++.++|++.+
T Consensus 217 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 296 (588)
T 1b3u_A 217 DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE 296 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHH
Confidence 8999999999999999888753 455555566666668999999999988877664 37899999999999999
Q ss_pred HHHHHHHHHHHHHHHHccccc--cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc
Q psy10471 157 VQNGVLKALSFLFEYIGEMGK--DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF 234 (318)
Q Consensus 157 v~~~vl~al~~i~~~lg~~~~--~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~ 234 (318)
++..+++++..+.+.+|.... .|++.++|.+...+++.+..+|+.++.+++.++..+ |.+....++++.+...+.
T Consensus 297 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~p~l~~~l~ 373 (588)
T 1b3u_A 297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL---GKDNTIEHLLPLFLAQLK 373 (588)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH---CHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhC
Confidence 999999999999998876433 578999999999999999999999999999998877 455556678888888888
Q ss_pred CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc----cccccchHHHHHHH
Q psy10471 235 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF----HPARKVRDVYWKIY 283 (318)
Q Consensus 235 d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~----~~a~~~r~~~w~i~ 283 (318)
|++++||..++.+++.++..+|.+.+.+.++|.+. +++.++|......+
T Consensus 374 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 374 DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 89999999999999999999998776666666663 33445665444444
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.85 E-value=4e-20 Score=190.57 Aligned_cols=297 Identities=13% Similarity=0.114 Sum_probs=231.0
Q ss_pred chhhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHh
Q psy10471 3 SDKNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELL 80 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L 80 (318)
+.|++++.++|.++...+ ..+.||+++++|.+.+.++|+++.||.++++++|++++..++.+. .+.+.+++..+++.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh
Confidence 358899999999986333 347899999999999999999999999999999999987654332 345566667777888
Q ss_pred hhchHHHHHHHHHHHHHHHhhhC--------HH--HHHHHHHHhhcccc--hhhHHHHHHHHHHHHhhcCc----c--cc
Q psy10471 81 KAHKKAIRRATVNTFGYIAKAIG--------PH--DVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCSP----F--TV 142 (318)
Q Consensus 81 ~d~~~~vR~~av~~lg~la~~ig--------p~--~~l~~Ll~~Lk~~~--~~~R~~~~~ai~~i~~~~~p----~--~v 142 (318)
+++ +.+|..|.++++.+++.++ |+ .+++.|++.++..+ ..+|..+..+++.++..++. + .+
T Consensus 464 ~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l 542 (861)
T 2bpt_A 464 QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI 542 (861)
T ss_dssp TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHH
Confidence 886 7899999999999998765 43 56788888887433 47899999999988766553 2 67
Q ss_pred hHHHHHHhcCC---------------cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCH-HHHHHHHHHH
Q psy10471 143 LPALMNEYRVP---------------ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL-VHRQTACATI 206 (318)
Q Consensus 143 ip~L~~~~~d~---------------~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~-~~R~~a~~~i 206 (318)
+|.+++.+.+. ..+++..+++++..+++.+|..+.+|++.++|.+...+.+.+. .+|..+..++
T Consensus 543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l 622 (861)
T 2bpt_A 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI 622 (861)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHH
Confidence 77777776532 3456789999999999999999999999999999999988877 8999999999
Q ss_pred HHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh----cccc--ccchHH
Q psy10471 207 KHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL----FHPA--RKVRDV 278 (318)
Q Consensus 207 ~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l----~~~a--~~~r~~ 278 (318)
+.++...+ .++...+..+++.+...+.++++++|..++.+++.++.++|.++ +.+.+++.+ -++. +.+|..
T Consensus 623 ~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~ 701 (861)
T 2bpt_A 623 SALAASLG-KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA 701 (861)
T ss_dssp HHHHHHHG-GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHH
Confidence 99988773 33455667777777777777888999999999999999999643 333444444 2332 567777
Q ss_pred HHHHHHHhhccccccccccCCCC
Q psy10471 279 YWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 279 ~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
..+.+..+....++.|.||+|.+
T Consensus 702 ~~~~l~~l~~~~~~~~~~~l~~~ 724 (861)
T 2bpt_A 702 VLSVFGDIASNIGADFIPYLNDI 724 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 76666555544456888886654
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.81 E-value=5.8e-18 Score=174.37 Aligned_cols=262 Identities=15% Similarity=0.147 Sum_probs=210.1
Q ss_pred hhhHHHHHHHHHHHhccCc--CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC----CCCChhhHHHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAI--LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP----EYVSAREWMRICFELLE 78 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~--~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~----~~i~~~~~~~il~~Ll~ 78 (318)
|.+++.++|+++...+..+ .+++++++|.++..++|+ +.||.+|+++++.+++..+ +.+ .+.+.+++..|++
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l-~~~~~~il~~L~~ 505 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI-YNFYPALVDGLIG 505 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhh-HHHHHHHHHHHHH
Confidence 6678889999999888765 789999999999999986 9999999999999998765 222 3556667777888
Q ss_pred Hhhh--chHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhccc---------------chhhHHHHHHHHHHHHh
Q psy10471 79 LLKA--HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQ---------------ERQNRVCTTVAIAIVAE 135 (318)
Q Consensus 79 ~L~d--~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~---------------~~~~R~~~~~ai~~i~~ 135 (318)
.+++ .+..+|.++++++|.+++..++. .+++.+++.+... ....|..+..+++.++.
T Consensus 506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~ 585 (861)
T 2bpt_A 506 AANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIR 585 (861)
T ss_dssp HHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 8874 44689999999999999887742 3455555555421 12466677788877765
Q ss_pred hcC----cc--cchHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy10471 136 TCS----PF--TVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKH 208 (318)
Q Consensus 136 ~~~----p~--~vip~L~~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~ 208 (318)
..+ |+ .++|.+++.+++++. .++..++.++..+++..|..+.+|++.++|.+.+.+++.+..+|..+..+++.
T Consensus 586 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~ 665 (861)
T 2bpt_A 586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIAD 665 (861)
T ss_dssp HCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 544 44 688889999988776 89999999999999999999999999999999999998889999999999999
Q ss_pred HhhhhcCCCchhHHHHHHHhhhhcccCCC--hHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471 209 MALGVYGFGCEDALTHLLNYVWPNIFETS--PHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF 269 (318)
Q Consensus 209 la~~~~~~~~~~~i~hll~~l~~~i~d~~--~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~ 269 (318)
++..++ ......+..+++.++..+.+++ +++|..++.+++.++...|.++ +.+.++|.++
T Consensus 666 l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~ 729 (861)
T 2bpt_A 666 ISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729 (861)
T ss_dssp HHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 988774 2334566677777777776654 8899999999999999999865 4666777664
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=4.4e-18 Score=176.61 Aligned_cols=293 Identities=14% Similarity=0.143 Sum_probs=224.5
Q ss_pred hhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 5 KNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
|.++..++|+++...+. ...+|++++++.++..++|.++.||.+|+++|+.+++..++.+ .+.+.+++..|++.+++.
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l-~~~l~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKY 495 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh-HhHHHHHHHHHHHHHHHh
Confidence 66788999999997664 6889999999999999999999999999999999999877655 456677777888888886
Q ss_pred hHHHHHHHHHHHHHHHhhhCHH--------HHHHHHH---HhhcccchhhHHHHHHHHHHHHhhcC----cc--cchHHH
Q psy10471 84 KKAIRRATVNTFGYIAKAIGPH--------DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCS----PF--TVLPAL 146 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~igp~--------~~l~~Ll---~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~--~vip~L 146 (318)
+......++.+++.+++.+|+. .+++.++ +.+++.+...| .+..+++.++...+ || .++|.+
T Consensus 496 ~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~ 574 (852)
T 4fdd_A 496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRC 574 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 6666677889999998887752 3455555 34455555554 56777776654433 44 455655
Q ss_pred HHHhcC-----------------CcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10471 147 MNEYRV-----------------PELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIK 207 (318)
Q Consensus 147 ~~~~~d-----------------~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~ 207 (318)
++.+++ ++.+++..++.+++.+++.+|..+.+|+ +.++|.+.+.+.+.++.+|+.+..+++
T Consensus 575 ~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~ 654 (852)
T 4fdd_A 575 VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 654 (852)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 554432 2456788899999999999999999998 789999999999999999999999999
Q ss_pred HHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh------HHHhHHHHhccc--cccchHHH
Q psy10471 208 HMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR------ILQYVLQGLFHP--ARKVRDVY 279 (318)
Q Consensus 208 ~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~------~~~~vl~~l~~~--a~~~r~~~ 279 (318)
.++..+. ......+..++|.+...+.++++++|..++.+++.++..+|.+. +.+.+++.+-++ .+.+++.-
T Consensus 655 ~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a 733 (852)
T 4fdd_A 655 DLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT 733 (852)
T ss_dssp HHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHH
Confidence 9998774 34567788889988888877889999999999999999998742 444444444333 34577777
Q ss_pred HHHHHHhhccccccccccCCC
Q psy10471 280 WKIYNSLYIGGQDALISAYPR 300 (318)
Q Consensus 280 w~i~~~~~~~~~~~~~p~~p~ 300 (318)
+.....+...+.+.+.||+|.
T Consensus 734 ~~~igrl~~~~~~~~~~~l~~ 754 (852)
T 4fdd_A 734 AITIGRLGYVCPQEVAPMLQQ 754 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHH
T ss_pred HHHHHHHHHhCHHHhCccHHH
Confidence 776666655555566676444
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.80 E-value=1.7e-18 Score=178.62 Aligned_cols=296 Identities=12% Similarity=0.061 Sum_probs=221.4
Q ss_pred hhhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHHHhh
Q psy10471 4 DKNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV-SAREWMRICFELLELLK 81 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i-~~~~~~~il~~Ll~~L~ 81 (318)
.|++++.++|.++...+ ..+.||+++++|.+.+.++|+++.||.+|++++|++++..++.+ ..+.+.+++..+++.++
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 461 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc
Confidence 58899999999987444 34678999999999999999999999999999999999877644 24566777788888888
Q ss_pred hchHHHHHHHHHHHHHHHhhh------------------CHH--HHHHHHHHhhccc---chhhHHHHHHHHHHHHhhcC
Q psy10471 82 AHKKAIRRATVNTFGYIAKAI------------------GPH--DVLATLLNNLKVQ---ERQNRVCTTVAIAIVAETCS 138 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~i------------------gp~--~~l~~Ll~~Lk~~---~~~~R~~~~~ai~~i~~~~~ 138 (318)
++ +.+|..++++++.+++.. .|+ .+++.|++.++.. ++..|..+..+++.+...++
T Consensus 462 ~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 86 779999999999988764 354 6788888888754 34688888999988876655
Q ss_pred c----c--cchHHHHHHhcC-----------Cc----chHHHHHHHHHHHHHHHHc-cccccchhhhHHHHHHHHhcCC-
Q psy10471 139 P----F--TVLPALMNEYRV-----------PE----LNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALMDRD- 195 (318)
Q Consensus 139 p----~--~vip~L~~~~~d-----------~~----~~v~~~vl~al~~i~~~lg-~~~~~yl~~iiP~l~~~l~~~~- 195 (318)
. + .++|.++..+.+ .+ .+++..+++++..+++.+| ..+.+|++.++|.+.+.+++..
T Consensus 541 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 620 (876)
T 1qgr_A 541 KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG 620 (876)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC
Confidence 3 2 677777766542 22 3467889999999999999 8899999999999999998764
Q ss_pred -HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC-ChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh---
Q psy10471 196 -LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET-SPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL--- 268 (318)
Q Consensus 196 -~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~-~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l--- 268 (318)
..+|..++.+++.++...+ ..+...+..+++.+...+.+. ++++|..++.+++.++.++|.+. +.+.+++.+
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 699 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLG-GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN 699 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3789999999999988763 345566677777777777776 88999999999999999999642 233344444
Q ss_pred -cc--ccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471 269 -FH--PARKVRDVYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 269 -~~--~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
-. .++.+|...-..+..+....++.|.||+|.+
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~ 735 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVV 735 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 22 2345666544444333332235688887654
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.73 E-value=2.5e-16 Score=169.41 Aligned_cols=298 Identities=14% Similarity=0.104 Sum_probs=222.2
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
..|..++.+++.++...|..+.||+++++|.++..++|+++.||++++.+++.+++..++.+ .+.+..++..+++.++.
T Consensus 229 ~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTY 307 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHHHHHHhCC
Confidence 35778999999999999999999999999999999999999999999999999999877655 33444455545544431
Q ss_pred -------------------------------------chHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhcccc
Q psy10471 83 -------------------------------------HKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQE 119 (318)
Q Consensus 83 -------------------------------------~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~~ 119 (318)
....+|++|..+++.++...+. + .+++.++..+++.+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence 1124799999999999985543 2 34666777777777
Q ss_pred hhhHHHHHHHHHHHHhhcC-----------------------cc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471 120 RQNRVCTTVAIAIVAETCS-----------------------PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 174 (318)
Q Consensus 120 ~~~R~~~~~ai~~i~~~~~-----------------------p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~ 174 (318)
..+|..++.+++.+....+ ++ .++|.+.+.+++++..++.+++.++..+.+..+.
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~ 467 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh
Confidence 7899999888875543321 11 4667777779999999999999999999998777
Q ss_pred ccccchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471 175 MGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR 252 (318)
Q Consensus 175 ~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~ 252 (318)
.+.+|++.++|.+.+.+++.. ..+|..++..++.+........+...+..+++.++..+.|.+..++..++.++..++
T Consensus 468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 778999999999999999876 488888888887776544222233456667777777788888999999999999999
Q ss_pred HHcCh-------h--hHHHhHHHHh------ccccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471 253 VALGP-------V--RILQYVLQGL------FHPARKVRDVYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 253 ~alG~-------~--~~~~~vl~~l------~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
.++|+ + .+.+.++|.+ .+....+|+.--+.+..+-...++.+.+++|.+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~ 611 (1230)
T 1u6g_C 548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT 611 (1230)
T ss_dssp HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH
T ss_pred HHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 99987 1 2344445544 223345776555555555445556677776654
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.72 E-value=3.4e-16 Score=161.44 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=212.6
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhh
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d 82 (318)
-|..+..+++.++...|.. .++.++|.+.+.++|+++.+|.+|+.++|.++++.+ +.+ .+.+..++..+++.++|
T Consensus 344 ~r~~a~~~l~~l~~~~~~~---~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL-KPLVIQAMPTLIELMKD 419 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCcHh---hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHhCC
Confidence 4778999999999988753 477899999999999999999999999999998766 222 23444566667788899
Q ss_pred chHHHHHHHHHHHHHHHhhhCH------H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhh------------------
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGP------H--DVLATLLNNLKVQERQNRVCTTVAIAIVAET------------------ 136 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp------~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~------------------ 136 (318)
+++.||..|++++|.+++.+++ + .+++.+++.+++. ..+|..++.+++.+++.
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~ 498 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYC 498 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchh
Confidence 9999999999999999987654 2 5778888888764 55777788888876654
Q ss_pred cCcc--cchHHHHHHhcCC---cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc-----------CC----H
Q psy10471 137 CSPF--TVLPALMNEYRVP---ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD-----------RD----L 196 (318)
Q Consensus 137 ~~p~--~vip~L~~~~~d~---~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~-----------~~----~ 196 (318)
..|| .++|.|++.+++. +.+++..+++++..+.+..|..+.+|+..++|.+...+.. .| +
T Consensus 499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 3355 7999999998775 3578888999999999999988899999999999988864 12 4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCC--hHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh----
Q psy10471 197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETS--PHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL---- 268 (318)
Q Consensus 197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~--~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l---- 268 (318)
.+|..+..+++.++..++..+....+..+++.++..+.+.. +.++..++.+++.++...|.++ +.+.++|.+
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 658 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL 658 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56778888888887665211223345556666666655543 4789999999999999998753 334444444
Q ss_pred ccc-cccchHHHHHHHHHhhccccccccccCCC
Q psy10471 269 FHP-ARKVRDVYWKIYNSLYIGGQDALISAYPR 300 (318)
Q Consensus 269 ~~~-a~~~r~~~w~i~~~~~~~~~~~~~p~~p~ 300 (318)
-+. ...+|......+..+....++.+.||++.
T Consensus 659 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T 1qgr_A 659 KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 333 45677755554444432223456666443
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.72 E-value=2.5e-15 Score=161.59 Aligned_cols=294 Identities=9% Similarity=0.075 Sum_probs=225.5
Q ss_pred hhhHHHHHHHHHHHhcc-------------------CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC
Q psy10471 5 KNLGIKIVQQIAILMGC-------------------AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS 65 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~-------------------~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~ 65 (318)
|..++.+++.+....|. .+.++++.+++.+.+.++|+++.+|.+++.++|.+++..+..+
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l- 469 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL- 469 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT-
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhh-
Confidence 44677777777766542 2456788888888888999999999999999999999877665
Q ss_pred hhhHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhh
Q psy10471 66 AREWMRICFELLELLKAHK--KAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAET 136 (318)
Q Consensus 66 ~~~~~~il~~Ll~~L~d~~--~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~ 136 (318)
.+.+.+++..+++.|+|++ ..+|.+++..++.+.+..||. .+++.+++.+++...++|..+..+++.+++.
T Consensus 470 ~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~ 549 (1230)
T 1u6g_C 470 TQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV 549 (1230)
T ss_dssp GGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 3567778888889999965 489999999999998877764 3567777777766556777777777766655
Q ss_pred cC-----------cc--cchHHHHHHh--cCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHH
Q psy10471 137 CS-----------PF--TVLPALMNEY--RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201 (318)
Q Consensus 137 ~~-----------p~--~vip~L~~~~--~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~ 201 (318)
++ || .++|.+++.+ .|++.+++..++.+++.+++..|..+.+|++.++|.+...+.+. ..|..
T Consensus 550 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~ 627 (1230)
T 1u6g_C 550 IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLT 627 (1230)
T ss_dssp HCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHH
T ss_pred hcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHH
Confidence 43 33 7899999999 77788999999999999999999999999999999999988755 36888
Q ss_pred HHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc-------ccccc
Q psy10471 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF-------HPARK 274 (318)
Q Consensus 202 a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~-------~~a~~ 274 (318)
+..+++.++......+.+..+.++++.+...+.+++..+|.+++.+++.++...|.....+++.+.+. +.+..
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~ 707 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHH
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHH
Confidence 88899888775544455677888888888888889999999999999999999986443344444441 22333
Q ss_pred chHHHHHHHHHhhccccccccccCCCC
Q psy10471 275 VRDVYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 275 ~r~~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
+...-|..+..++......+.++++.+
T Consensus 708 ~~~~~~~~L~~l~~~~~~~~~~~~~~~ 734 (1230)
T 1u6g_C 708 VSQMAISFLTTLAKVYPSSLSKISGSI 734 (1230)
T ss_dssp HHHHHHHHHHHHTTSCGGGGGGTTTTT
T ss_pred HHHHHHHHHHHHHHhCchhHHHhHHhH
Confidence 555667777777655555554444433
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.69 E-value=4.1e-15 Score=142.05 Aligned_cols=264 Identities=13% Similarity=0.068 Sum_probs=199.2
Q ss_pred hhhhHHHHHHHHHHHh-ccCcCCChHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILM-GCAILPHLKNLVEIIEHGLVDE--QQKVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLEL 79 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~-g~~~~P~l~~l~~~l~~~l~d~--~~~vR~aa~~~LG~la~~~~~~i~~~~~~~-il~~Ll~~ 79 (318)
-|+.++.+++.++... +..+.++.+.+++.+...++|+ ++.||.+|+++++.+.+...+......+.+ ++..+.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 4789999999999866 5668999999999999999998 799999999999997653221111111111 23334455
Q ss_pred hhhchHHHHHHHHHHHHHHHhhhC----HH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhh----------------
Q psy10471 80 LKAHKKAIRRATVNTFGYIAKAIG----PH---DVLATLLNNLKVQERQNRVCTTVAIAIVAET---------------- 136 (318)
Q Consensus 80 L~d~~~~vR~~av~~lg~la~~ig----p~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~---------------- 136 (318)
++++...+|..++++|+.+++..+ |+ .+++.++..+++.+..+|..+...+..+++.
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 677778899999999999987543 22 5677777777776667888877777665532
Q ss_pred -----cC----c--ccchHHHHHHhcCC-------cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHH
Q psy10471 137 -----CS----P--FTVLPALMNEYRVP-------ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH 198 (318)
Q Consensus 137 -----~~----p--~~vip~L~~~~~d~-------~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~ 198 (318)
+. + ..++|.+++.+.+. +.+++.++..++..+++.+| ...++.++|.+...+.+.+..+
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT---TTHHHHHHHHHHHHTTCSSHHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCChHH
Confidence 11 1 25788888877542 34688999999999999988 3677889999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh----hHHHhHHHHhcc
Q psy10471 199 RQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV----RILQYVLQGLFH 270 (318)
Q Consensus 199 R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~----~~~~~vl~~l~~ 270 (318)
|..++.+++.++.++........+..+++.+.+.+.|+++.||..++.+++.++..+|++ .+.+.++++++.
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 999999999998865322223444567777788888999999999999999999999874 356667776653
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.65 E-value=2.7e-14 Score=136.38 Aligned_cols=270 Identities=13% Similarity=0.170 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHHHhhh
Q psy10471 6 NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDE--QQKVQENCIDLVGRIADRG-PEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 6 ~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~--~~~vR~aa~~~LG~la~~~-~~~i~~~~~~~il~~Ll~~L~d 82 (318)
+.+..+|+.+|...+.. ...++++|.+...++++ ++.+|..|+.+|+.+++.. ++.. ......++..+++.+++
T Consensus 107 ~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~ 183 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRK 183 (462)
T ss_dssp CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT-GGGHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh-HhHHHHHHHHHHHHhCC
Confidence 34667788888865431 24578999999999998 8999999999999999865 3332 34445566667788888
Q ss_pred c--hHHHHHHHHHHHHHHHhhhCH----H----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----c---cchHH
Q psy10471 83 H--KKAIRRATVNTFGYIAKAIGP----H----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----F---TVLPA 145 (318)
Q Consensus 83 ~--~~~vR~~av~~lg~la~~igp----~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~---~vip~ 145 (318)
+ +..||.+|+++++.+...+.+ . .+++.+...+.+.+...|..+..++..+++.++. + .++|.
T Consensus 184 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 263 (462)
T 1ibr_B 184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263 (462)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 688999999999986543331 1 1345555555555668899999999888766542 2 67888
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHH---------------------ccccccchhhhHHHHHHHHhcC-------CHH
Q psy10471 146 LMNEYRVPELNVQNGVLKALSFLFEYI---------------------GEMGKDYIYAVTPLLEDALMDR-------DLV 197 (318)
Q Consensus 146 L~~~~~d~~~~v~~~vl~al~~i~~~l---------------------g~~~~~yl~~iiP~l~~~l~~~-------~~~ 197 (318)
++..+++.+.+++..+++.+..+++.. ...+++|++.++|.+.+.+.+. +..
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888888999999998999888887753 1123456788999998888543 358
Q ss_pred HHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh-------hhHHHhHHHHhcc
Q psy10471 198 HRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFH 270 (318)
Q Consensus 198 ~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~-------~~~~~~vl~~l~~ 270 (318)
+|..++.+++.++... | +..+..+++++...+.+++..+|..++.+++.++...++ +.+.|.+++.+-+
T Consensus 344 ~r~~a~~~L~~l~~~~---~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d 419 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCC---E-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419 (462)
T ss_dssp HHHHHHHHHHHHHHHT---T-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhc---c-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998887 3 467778888888888889999999999999999975542 2366777777777
Q ss_pred ccccchHH-HHHH
Q psy10471 271 PARKVRDV-YWKI 282 (318)
Q Consensus 271 ~a~~~r~~-~w~i 282 (318)
+..+||.. .|.+
T Consensus 420 ~~~~Vr~~a~~~l 432 (462)
T 1ibr_B 420 PSVVVRDTAAWTV 432 (462)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 77778873 4433
No 13
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.3e-14 Score=130.11 Aligned_cols=206 Identities=9% Similarity=0.067 Sum_probs=166.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHH-HHhhCCCCCC-hhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhhC-HHHHH
Q psy10471 33 IIEHGLVDEQQKVQENCIDLVGR-IADRGPEYVS-AREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIG-PHDVL 108 (318)
Q Consensus 33 ~l~~~l~d~~~~vR~aa~~~LG~-la~~~~~~i~-~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~la~~ig-p~~~l 108 (318)
-+.+.+++.+|.-|.+|+..|+. ++++++.... ..++..++..|.+.+ +|.+..+|..|++++|++++.++ |. +
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~-f- 97 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG-F- 97 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT-S-
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc-c-
Confidence 46677889999999999999999 9987665442 235566777777888 78899999999999999998887 42 0
Q ss_pred HHHHHhhccc-chhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc-cchhhhHHH
Q psy10471 109 ATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK-DYIYAVTPL 186 (318)
Q Consensus 109 ~~Ll~~Lk~~-~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~-~yl~~iiP~ 186 (318)
+ .+.. .++|+++..++|...++++++..++..++++++.... +|++.+++.
T Consensus 98 ---------~~~y~~------------------~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~ 150 (249)
T 2qk1_A 98 ---------SKDYVS------------------LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD 150 (249)
T ss_dssp ---------CHHHHH------------------HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH
T ss_pred ---------cHHHHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHH
Confidence 0 0000 5678888999998899999999999999998865332 459999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhhhcCC--CchhHH-HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHh
Q psy10471 187 LEDALMDRDLVHRQTACATIKHMALGVYGF--GCEDAL-THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQY 263 (318)
Q Consensus 187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~--~~~~~i-~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~ 263 (318)
+...+.+.++.+|+.++..++.++...+.. .+...+ ..+.+.+...+.|++++||...+++++.++.++|.+.+.||
T Consensus 151 l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~ 230 (249)
T 2qk1_A 151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKT 230 (249)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999999999999998876421 122455 66777778888899999999999999999999999999998
Q ss_pred HHHH
Q psy10471 264 VLQG 267 (318)
Q Consensus 264 vl~~ 267 (318)
+-..
T Consensus 231 l~~L 234 (249)
T 2qk1_A 231 LEHL 234 (249)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 8764
No 14
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=2.1e-14 Score=127.30 Aligned_cols=182 Identities=11% Similarity=0.141 Sum_probs=155.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhhCH----H-
Q psy10471 32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIGP----H- 105 (318)
Q Consensus 32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~la~~igp----~- 105 (318)
+.+...+.|.++.+|++|+..|+.+++..+... ...+..++..|...+ +|++..||..|+.++|.+++.+|+ +
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE-NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC-CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 346677889999999999999999999855433 233455666677788 488999999999999999998885 3
Q ss_pred -HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--ccccchhh
Q psy10471 106 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYA 182 (318)
Q Consensus 106 -~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--~~~~yl~~ 182 (318)
.+++.++..+++++..+|.....++..++..+....++|.+...+++.++.++..++..+..++...+. .+.+|++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~ 176 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKL 176 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 578899999998877899999999998887776568999999999999999999999999998887663 36789999
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 183 VTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
++|.+..++.|.+..+|..+..+++.++..++
T Consensus 177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998884
No 15
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=4.8e-14 Score=125.01 Aligned_cols=187 Identities=14% Similarity=0.129 Sum_probs=158.0
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
.+|+.|+..|..+....+....+...++++.+...+ +|.++.||.+|+.++|++|...++.+ .+.+..++..+++.++
T Consensus 30 ~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~ 108 (242)
T 2qk2_A 30 TLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFK 108 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHc
Confidence 468899999999988533345567789999999999 59999999999999999998777654 4666778888999999
Q ss_pred hchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------c--cchHHHHHHhcCC
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------F--TVLPALMNEYRVP 153 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~--~vip~L~~~~~d~ 153 (318)
|++..||.+|..++..+++.++...+++.++..|++.+.+.|..+...++.+...++| + .++|.+...+.|+
T Consensus 109 d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~ 188 (242)
T 2qk2_A 109 EKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP 188 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999888888999999999977778999999999887655543 1 7999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHccc-cccchhhhHHHHHHH
Q psy10471 154 ELNVQNGVLKALSFLFEYIGEM-GKDYIYAVTPLLEDA 190 (318)
Q Consensus 154 ~~~v~~~vl~al~~i~~~lg~~-~~~yl~~iiP~l~~~ 190 (318)
..++|..+.+++..+.+.+|.. +.+|++.+-|.-.+.
T Consensus 189 ~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~ 226 (242)
T 2qk2_A 189 DPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAK 226 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999985 778887664444333
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.53 E-value=5.1e-13 Score=127.37 Aligned_cols=282 Identities=10% Similarity=0.035 Sum_probs=193.8
Q ss_pred hhhHHHHHHHHHHHhccCcCCCh--HhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l--~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
|..++.+++.++.... ..+..+ ..+++.++..+++ .++.+|+.|+++|+.++....+.........++..|++.++
T Consensus 124 r~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 124 QEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred HHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 5677888888876211 111111 2467888888885 78999999999999999765332222222344555667778
Q ss_pred hchHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHH
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALM 147 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~ 147 (318)
+++..+|..++++++.++....+ ..+++.|++.|++++...|..++.+++.++.... ...++|.++
T Consensus 203 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 282 (450)
T 2jdq_A 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282 (450)
T ss_dssp CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence 88889999999999999863222 1367888999987777888888899887764321 136899999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH-HH
Q psy10471 148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT-HL 225 (318)
Q Consensus 148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~-hl 225 (318)
+.+++++..++..++.++..+...-.......+ ..++|.+.+.+.+.++.+|..++.+++.++...........+. .+
T Consensus 283 ~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 362 (450)
T 2jdq_A 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362 (450)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 999999999999999999988752111222233 3689999999999999999999999999976521000011111 24
Q ss_pred HHhhhhcccCCChHHHHHHHHHHHHHHHHcChh---------hH---------HHhHHHHhccccccchHHHHHHHHHhh
Q psy10471 226 LNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV---------RI---------LQYVLQGLFHPARKVRDVYWKIYNSLY 287 (318)
Q Consensus 226 l~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~---------~~---------~~~vl~~l~~~a~~~r~~~w~i~~~~~ 287 (318)
++.+...+.+.++++|..++.+++.++..-... .+ .+.+....-|++..+++.--.++++++
T Consensus 363 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 363 IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 555566666788999999999999998754321 11 233444335566666666666666665
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.8e-13 Score=118.13 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=146.8
Q ss_pred chhhhHHHHHHH-HHHHhcc-Cc---CCChHhHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHH
Q psy10471 3 SDKNLGIKIVQQ-IAILMGC-AI---LPHLKNLVEIIEHGL-VDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFE 75 (318)
Q Consensus 3 ~~r~~~l~~i~~-La~~~g~-~~---~P~l~~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~ 75 (318)
.+|+.++..|.. +.. |+ .+ .....+++..+.+.+ +|.|+.||.+|+++||++|++.+ +.+..+....++..
T Consensus 31 ~eRk~al~~L~~~~~~--~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ 108 (249)
T 2qk1_A 31 KDRVEALEEFWDSVLS--QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTP 108 (249)
T ss_dssp HHHHHHHHHHHHHTGG--GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 367788877777 665 54 33 345568899999999 89999999999999999999877 65522566667778
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhhh------C-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----------
Q psy10471 76 LLELLKAHKKAIRRATVNTFGYIAKAI------G-PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS---------- 138 (318)
Q Consensus 76 Ll~~L~d~~~~vR~~av~~lg~la~~i------g-p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~---------- 138 (318)
+++.++|.++.||.++..++-.+.+.+ + +..+++.|+..|+....+.|..+...|+..++...
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l 188 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 899999988999999999998888888 4 45789999999987767899999999987776554
Q ss_pred cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc-cccchhhh
Q psy10471 139 PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM-GKDYIYAV 183 (318)
Q Consensus 139 p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~-~~~yl~~i 183 (318)
+-.++|.+.+.+.|.+.++|.++.+++..+.+.+|.+ +.+|++.+
T Consensus 189 ~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 2379999999999999999999999999999999974 66666543
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.51 E-value=2.1e-13 Score=129.98 Aligned_cols=280 Identities=15% Similarity=0.074 Sum_probs=192.0
Q ss_pred hhhHHHHHHHHHHHhccCcCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHHHhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLK 81 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~~L~ 81 (318)
|..+..+++.++.-........+ ...+|.+...++++++.+|+.|+++||.++....+.- ... ..++..|++.++
T Consensus 82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~L~~~l~ 159 (450)
T 2jdq_A 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR--DYVLDCNILPPLLQLFS 159 (450)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHCCCHHHHHHHhc
Confidence 55677777777651101111111 3589999999999999999999999999998543211 111 124455667788
Q ss_pred h-chHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHH
Q psy10471 82 A-HKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPAL 146 (318)
Q Consensus 82 d-~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L 146 (318)
+ .+..+|+.|+++++.++..-+| ..+++.|++.+++++...|..++.+++.++.... ...++|.+
T Consensus 160 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 239 (450)
T 2jdq_A 160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence 6 6788999999999999965433 2578889999987777888888888887764321 13689999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH-HH
Q psy10471 147 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL-TH 224 (318)
Q Consensus 147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i-~h 224 (318)
++.+++++.+++..++.++..++..-+......+ ..++|.+..++.+.+..+|..++.+++.++..... .....+ ..
T Consensus 240 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~ 318 (450)
T 2jdq_A 240 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA-QIQTVIDAN 318 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTT
T ss_pred HHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCC
Confidence 9999999999999999999988764222222222 35889999999999999999999999998763210 001111 13
Q ss_pred HHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--------HHHhHHHHhccccccchH-HHHHHHHHhh
Q psy10471 225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--------ILQYVLQGLFHPARKVRD-VYWKIYNSLY 287 (318)
Q Consensus 225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--------~~~~vl~~l~~~a~~~r~-~~w~i~~~~~ 287 (318)
+++.++..+.+.++++|..++.+++.++....++. ..|.++..+-+...+++. +.|.+.+-+.
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45555566667889999999999999987654432 333444444344445544 5555554443
No 19
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.50 E-value=5.6e-12 Score=113.54 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=82.4
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC--HHH
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG--PHD 106 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig--p~~ 106 (318)
..++.+...++|+++.||..|+.+||++...... ...+.+++.. ..++|++..+|..+++++|.++...+ ...
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L~~--~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~ 128 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC---EDNVFNILNN--MALNDKSACVRATAIESTAQRCKKNPIYSPK 128 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc---chHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHhccCCcccHH
Confidence 4555555566666666666666666655421110 1111112110 12344555566666666666553221 123
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL 186 (318)
Q Consensus 107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~ 186 (318)
+++.|...|++++..+|..++.+++.++. -.++|.|...++|++..++..++.++..+ |. .-+..+|.
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~----~~~~~~~~ 196 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRATAFAISVIND----KATIPLLINLLKDPNGDVRNWAAFAININ----KY----DNSDIRDC 196 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHH----TC----CCHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHcCCCHHHHHHHHHHHHhh----cc----CcHHHHHH
Confidence 45555555555555566666655554332 13556666666666666666555555443 11 11345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q psy10471 187 LEDALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 187 l~~~l~~~~~~~R~~a~~~i~~l 209 (318)
+...+.+.++.+|..++.+++.+
T Consensus 197 L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 197 FVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHh
Confidence 56666666666666666665544
No 20
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.49 E-value=3.1e-12 Score=115.20 Aligned_cols=220 Identities=15% Similarity=0.028 Sum_probs=160.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-HHHH
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-DVLA 109 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-~~l~ 109 (318)
++.++..|+|+++.+|..|+++||++.+ . ..+..|++.++|+++.+|..|++++|.++..-... .+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~----~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-------Q----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-------H----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-------c----hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHH
Confidence 4667778899999999999999999863 1 23444567779988999999999999987422211 2333
Q ss_pred HHHH-hhcccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471 110 TLLN-NLKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL 186 (318)
Q Consensus 110 ~Ll~-~Lk~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~ 186 (318)
.|.+ .+++++..+|..++.+++.++....+ ..++|.|...++|++..++..++.++..+.. +..+|.
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~ 163 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPL 163 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHH
Confidence 4432 34566668999999999988754332 2688999999999999999988888875432 347788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471 187 LEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ 266 (318)
Q Consensus 187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~ 266 (318)
+..++.+.++.+|..++.+++.+.. +..+. .+.+...+.|+++.+|..++.+++.+ |.+...|.++.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~~----~~~~~~~~L~~ 230 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKY-----DNSDI----RDCFVEMLQDKNEEVRIEAIIGLSYR----KDKRVLSVLCD 230 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTC-----CCHHH----HHHHHHHTTCSCHHHHHHHHHHHHHT----TCGGGHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhcc-----CcHHH----HHHHHHHhcCCCHHHHHHHHHHHHHh----CCHhhHHHHHH
Confidence 9999999999999999999988732 12233 34445556778999999999998876 56777888888
Q ss_pred HhccccccchHHHHHHHHHh
Q psy10471 267 GLFHPARKVRDVYWKIYNSL 286 (318)
Q Consensus 267 ~l~~~a~~~r~~~w~i~~~~ 286 (318)
.+-++. +|..-...+..+
T Consensus 231 ~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 231 ELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp HHTSSS--CCHHHHHHHHHH
T ss_pred HhcCcc--HHHHHHHHHHhc
Confidence 776543 665444444444
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.46 E-value=6.9e-12 Score=123.20 Aligned_cols=282 Identities=13% Similarity=0.054 Sum_probs=193.9
Q ss_pred hhhHHHHHHHHHHHhccCcCCC--hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPH--LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~--l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
|..++.+|+.|+.... ..... -...++.++..+++.++.+|+.|+++|+.++....+.........++..|++++++
T Consensus 190 r~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~ 268 (530)
T 1wa5_B 190 KEQAIWALGNVAGDST-DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 268 (530)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCc-cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC
Confidence 5677888888875210 01111 12467888889999889999999999999998663333333334455567788888
Q ss_pred chHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHH
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMN 148 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~ 148 (318)
++..+|..|+++++.++..-... .+++.|+..|++++...|..++.+++.++.... ...++|.++.
T Consensus 269 ~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 269 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 88899999999999998632211 357788899987777788888888887763211 1368999999
Q ss_pred HhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHH--
Q psy10471 149 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTH-- 224 (318)
Q Consensus 149 ~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~h-- 224 (318)
.+++++..++..++.++..+...-......++ ..++|.+.+++.+.+..+|..++.+++.++...... .....+.+
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 99999999999999999988753211222333 468899999999999999999999999998764210 01111112
Q ss_pred HHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh---------h---------HHHhHHHHhccccccchHHHHHHHHHh
Q psy10471 225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV---------R---------ILQYVLQGLFHPARKVRDVYWKIYNSL 286 (318)
Q Consensus 225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~---------~---------~~~~vl~~l~~~a~~~r~~~w~i~~~~ 286 (318)
.++.+...+.+.+++++..++.+++.+...-... . ..+.+.....|++..+++.--.++.++
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4445555566688999999999999988754321 1 233444444567765555444444444
Q ss_pred h
Q psy10471 287 Y 287 (318)
Q Consensus 287 ~ 287 (318)
+
T Consensus 509 ~ 509 (530)
T 1wa5_B 509 F 509 (530)
T ss_dssp S
T ss_pred C
Confidence 4
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.45 E-value=2.3e-12 Score=126.63 Aligned_cols=254 Identities=11% Similarity=0.095 Sum_probs=181.3
Q ss_pred hHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471 29 NLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~ 105 (318)
.++|.++..|+++ ++.+|..|+++|+.++....+.. ..+ ...+..|+++|++++..+|..|+++++.++..-...
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT--KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 5788899999997 89999999999999998543211 111 123445667778888999999999999998632111
Q ss_pred -------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471 106 -------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALSFLFEY 171 (318)
Q Consensus 106 -------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~ 171 (318)
.+++.|+..|++.+...|..++.+++.++....| ..++|.|++.+++++.+++..++.++..+...
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 3577888888876667888888888888754422 27899999999999999999999999988753
Q ss_pred Hccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471 172 IGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAV 248 (318)
Q Consensus 172 lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i 248 (318)
-.......+ ..++|.+..++.+.+..+|..++.+++.++.... .....+ ..+++.+...+.++++.+|..++.++
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND--LQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH--HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222222233 3688999999999999999999999998875421 000111 12556666667778899999999999
Q ss_pred HHHHHHcCh--------hhHHHhHHHHhccccccchH-HHHHHHHHhh
Q psy10471 249 EGLRVALGP--------VRILQYVLQGLFHPARKVRD-VYWKIYNSLY 287 (318)
Q Consensus 249 ~~i~~alG~--------~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~~ 287 (318)
..++.. .+ ..+.|.++..+-++...++. +.|.+.|...
T Consensus 366 ~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 366 SNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 998752 11 12455566665555555554 6666666554
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.44 E-value=6.3e-12 Score=123.24 Aligned_cols=293 Identities=10% Similarity=0.050 Sum_probs=193.1
Q ss_pred hhhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
|..++.+|+.|+... ...+..+- ..++.++..+ ++.++.+|+.++++|+.++...+.. ......+.+..|++.++
T Consensus 177 ~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~ 254 (528)
T 4b8j_A 177 REQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIH 254 (528)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHC
Confidence 567788888887521 11111121 3677788888 5678999999999999999875332 23334456666778889
Q ss_pred hchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHH
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALM 147 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~ 147 (318)
+++..+|..|+++++.++...... .+++.|+..|+..+...|..++.+++.++.... ...++|.|+
T Consensus 255 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (528)
T 4b8j_A 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLL 334 (528)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHH
Confidence 888899999999999998532221 247788999988777788888888887664211 236899999
Q ss_pred HHhcCC-cchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH--H
Q psy10471 148 NEYRVP-ELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL--T 223 (318)
Q Consensus 148 ~~~~d~-~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i--~ 223 (318)
+.++++ +..++..++.++..++..-.......+ ..++|.+.+++.+.+..+|..++.+++.++.... ......+ .
T Consensus 335 ~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~ 413 (528)
T 4b8j_A 335 SLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS-HDQIKYLVSE 413 (528)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHT
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHC
Confidence 999988 889999999999998863111122222 3688999999999999999999999999987621 0111111 1
Q ss_pred HHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh---------hH---------HHhHHHHhccccccchHHHHHHHHH
Q psy10471 224 HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV---------RI---------LQYVLQGLFHPARKVRDVYWKIYNS 285 (318)
Q Consensus 224 hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~---------~~---------~~~vl~~l~~~a~~~r~~~w~i~~~ 285 (318)
..++.+...+.+.+++++..++++++.+...-..+ .+ .+.+.....|++..+++.-..++..
T Consensus 414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~ 493 (528)
T 4b8j_A 414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 493 (528)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 23444456666788999999999999998765331 11 2334444457777555555555555
Q ss_pred hhcc-ccccccccCCC
Q psy10471 286 LYIG-GQDALISAYPR 300 (318)
Q Consensus 286 ~~~~-~~~~~~p~~p~ 300 (318)
++.. ..+++.++.|+
T Consensus 494 ~~~~e~~~~~~~~~~~ 509 (528)
T 4b8j_A 494 YWMDEEDDTMGATTVA 509 (528)
T ss_dssp HCC-------------
T ss_pred HCCCcccccccccCCC
Confidence 5432 33456666665
No 24
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.43 E-value=5.4e-12 Score=108.04 Aligned_cols=190 Identities=20% Similarity=0.220 Sum_probs=151.5
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
..+.-+...+.+++.|+|+++.+|..|+.+||++... + .+..|++.|++++..+|..|++++|.++.
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--------~---~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-- 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--------R---AVEPLIKALKDEDAWVRRAAADALGQIGD-- 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--------G---GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--------h---HHHHHHHHHcCCCHHHHHHHHHHHHhhCC--
Confidence 4566678889999999999999999999999987641 1 23345677789889999999999998753
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471 103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA 182 (318)
Q Consensus 103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ 182 (318)
...++.|++.|++++..+|..++.+++.+.. ...+|.+...++|++..++..++.++..+ |. +.
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~------~~ 138 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD------ER 138 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----TC------GG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC------HH
Confidence 3567888889998888899999999887643 25788999999999999999999988865 22 46
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471 183 VTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR 252 (318)
Q Consensus 183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~ 252 (318)
.+|.+..++.+.++.+|..++.+++.+ |..+.+..+.. .+.|+++.+|..+..+++.+.
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~-------~~~~~~~~L~~----~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEI-------GGERVRAAMEK----LAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH-------CSHHHHHHHHH----HHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-------CchhHHHHHHH----HHhCCCHHHHHHHHHHHHHHH
Confidence 778899999999999999999999887 33344444433 345588999999999988764
No 25
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=3.3e-12 Score=110.22 Aligned_cols=189 Identities=20% Similarity=0.209 Sum_probs=144.7
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
++.++.++..|+|+++.+|..|+.+||++.+. + .+..|++.+++++..+|..|++++|.++. ...
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~--------~---~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~ 82 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--------R---AVEPLIKALKDEDAWVRRAAADALGQIGD----ERA 82 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------G---GHHHHHHHTTCSCHHHHHHHHHHHHHHCC----GGG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc--------c---HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----HHH
Confidence 56778888999999999999999999987541 2 23345577789889999999999998763 346
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471 108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187 (318)
Q Consensus 108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l 187 (318)
++.|++.|++++..+|..++.+++.++. ...+|.|...++|++..++..++.++..+ |. +..+|.+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~------~~~~~~L 148 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD----ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD------ERAVEPL 148 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC------GGGHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC------HHHHHHH
Confidence 7888888988888899999998887643 25789999999999999999998888765 32 4567888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471 188 EDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256 (318)
Q Consensus 188 ~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG 256 (318)
..++.+.++.+|..++.+++.+. ..+.+..+ ...+.|+++.||..+..+++.+...-+
T Consensus 149 ~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L----~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 149 IKALKDEDGWVRQSAADALGEIG-------GERVRAAM----EKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHH----HHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHH----HHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 89999999999999999998772 23333333 333446889999999999988765544
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.39 E-value=3.2e-12 Score=112.08 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=164.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-- 105 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-- 105 (318)
-+|.++..|+++++.+|..|+++|+.++....+.. ..+. ..+..|++.|++++..+|..|+++++.++..-...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAI--KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH--HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 46788899999999999999999999998654221 1111 25566778889988999999999999998632211
Q ss_pred -----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Q psy10471 106 -----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 173 (318)
Q Consensus 106 -----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg 173 (318)
..++.|++.|++++...|..++.+++.++.... ...++|.+++.+++++..++..++.++..+...-.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 368889999998777888888888887763221 12689999999999999999999999998876322
Q ss_pred cccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471 174 EMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEG 250 (318)
Q Consensus 174 ~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~ 250 (318)
......+ ...+|.+.+++.+.++.+|..++.+++.++..-. +....+. ..++.+...+.++++++|..++.++..
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT--SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH--HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 1111222 4588999999999999999999999999875321 1111111 133444555566788899999999988
Q ss_pred HHHHcChhh
Q psy10471 251 LRVALGPVR 259 (318)
Q Consensus 251 i~~alG~~~ 259 (318)
++..-+...
T Consensus 239 l~~~~~~~~ 247 (252)
T 4hxt_A 239 IKSGGWLEH 247 (252)
T ss_dssp HHHTCBCCC
T ss_pred HHcCCCccc
Confidence 877655443
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.38 E-value=8.2e-12 Score=122.40 Aligned_cols=275 Identities=16% Similarity=0.149 Sum_probs=188.2
Q ss_pred hhhHHHHHHHHHHHhccCcCCChH-----hHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLK-----NLVEIIEHGLVDEQ-QKVQENCIDLVGRIADRGPEYVSAREWM--RICFEL 76 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~-----~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~L 76 (318)
|..++.++..++. + .-.|+.. .++|.++..|++++ +.+|..|+++|+.++....+.. ..+. ..+..|
T Consensus 91 ~~~A~~~L~~l~s--~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~i~~L 165 (528)
T 4b8j_A 91 QLEATTQFRKLLS--I-ERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT--KVVIDHGAVPIF 165 (528)
T ss_dssp HHHHHHHHHHHHT--C-SSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhc--C-CCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHhCCcHHHH
Confidence 3455555655554 2 2234443 56888999999876 9999999999999998544311 1111 255567
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcC-c-----cc
Q psy10471 77 LELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCS-P-----FT 141 (318)
Q Consensus 77 l~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~-p-----~~ 141 (318)
+++|++++..+|..|+++++.++.. +|. ..++.|+..|+ ..+...|..++.+++.++.... + ..
T Consensus 166 ~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 244 (528)
T 4b8j_A 166 VKLLGSSSDDVREQAVWALGNVAGD-SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 7888998889999999999999863 332 25778888884 4455788888888888775431 1 26
Q ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchh
Q psy10471 142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED 220 (318)
Q Consensus 142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~ 220 (318)
++|.|+..+++++.+++..++.++..+...-.......+ ..++|.+..++.+.+..+|..++.+++.++..... ....
T Consensus 245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~ 323 (528)
T 4b8j_A 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA-QTQC 323 (528)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH-HHHH
Confidence 899999999999999999999999988753222222222 35889999999999999999999999998763310 0001
Q ss_pred HH-HHHHHhhhhcccCC-ChHHHHHHHHHHHHHHHHcChh---------hHHHhHHHHhccccccch-HHHHHHHHHhhc
Q psy10471 221 AL-THLLNYVWPNIFET-SPHLVQAFMDAVEGLRVALGPV---------RILQYVLQGLFHPARKVR-DVYWKIYNSLYI 288 (318)
Q Consensus 221 ~i-~hll~~l~~~i~d~-~~~vr~~ii~~i~~i~~alG~~---------~~~~~vl~~l~~~a~~~r-~~~w~i~~~~~~ 288 (318)
.+ ...++.+...+.++ ++.++..++.++..++. |.+ .+.|.++..+.+...+++ ++.|.+.|....
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA--GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC--CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 11 11344445555567 89999999999999975 322 234555555544544444 467777665543
No 28
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.33 E-value=2.8e-11 Score=104.30 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=126.7
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV 107 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~ 107 (318)
++.++.+...++|+++.||..|+.+||.+.. ++..+ .|++.|+|+++.+|..|++++|.++. ...
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~---~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~ 113 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVE---PLIKALKDEDGWVRQSAAVALGQIGD----ERA 113 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHH---HHHHHTTCSSHHHHHHHHHHHHHHCC----GGG
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHH---HHHHHHcCCCHHHHHHHHHHHHHhCc----HHH
Confidence 4667888889999999999999999999863 12223 34567799889999999999998754 346
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471 108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187 (318)
Q Consensus 108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l 187 (318)
++.|...|++++..+|..++.+++.+.. ...+|.|...++|++..++..++.++..+ |. +..+|.+
T Consensus 114 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~------~~~~~~L 179 (211)
T 3ltm_A 114 VEPLIKALKDEDWFVRIAAAFALGEIGD----ERAVEPLIKALKDEDGWVRQSAADALGEI----GG------ERVRAAM 179 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CS------HHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc------hhHHHHH
Confidence 7888888888888899999999987743 36889999999999999999999988875 22 6788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 188 EDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 188 ~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
..++.+.++.+|..+..+++.+....
T Consensus 180 ~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 180 EKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999997775443
No 29
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.32 E-value=3.5e-11 Score=102.91 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=126.5
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l 108 (318)
+.++.++..++|+++.||..|+.+||.+... +. +..|++.|+|+++.+|..|++++|.++. ...+
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~--------~~---~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~ 109 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGDE--------RA---VEPLIKALKDEDGWVRQSAAVALGQIGD----ERAV 109 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------GG---HHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------HH---HHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHH
Confidence 5577788888999999999999999998531 22 2334567789999999999999998754 3467
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHH
Q psy10471 109 ATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188 (318)
Q Consensus 109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~ 188 (318)
+.|...|++++..+|..++.+++.+.. ...+|.|...++|++..++..++.++..+ |. +..+|.+.
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~------~~~~~~L~ 175 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGD----ERAVEPLIKALKDEDGWVRQSAADALGEI----GG------ERVRAAME 175 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CS------HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc------hhHHHHHH
Confidence 788888888888899999999987753 36889999999999999999999998876 32 56789999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhh
Q psy10471 189 DALMDRDLVHRQTACATIKHMAL 211 (318)
Q Consensus 189 ~~l~~~~~~~R~~a~~~i~~la~ 211 (318)
.++.+.++.+|..+..+++.+..
T Consensus 176 ~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 176 KLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHhCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987743
No 30
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.31 E-value=5.7e-11 Score=116.65 Aligned_cols=282 Identities=16% Similarity=0.137 Sum_probs=186.9
Q ss_pred CchhhhHHHHHHHHHHHhccCcCCChHhH-----HHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHH
Q psy10471 2 SSDKNLGIKIVQQIAILMGCAILPHLKNL-----VEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWM--RIC 73 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~l-----~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il 73 (318)
|.|...-+.+...+-.++..+-.|+++.+ +|.++.+|++ +++.+|..|+++|+.||+...+.. ..+. ..+
T Consensus 68 s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~--~~vv~~GaI 145 (510)
T 3ul1_B 68 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT--KAVVDGGAI 145 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCCH
Confidence 45555566666666666656678888765 7789999975 569999999999999997554321 1111 134
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch-----hhHHHHHHHHHHHHhhcCc-
Q psy10471 74 FELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER-----QNRVCTTVAIAIVAETCSP- 139 (318)
Q Consensus 74 ~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~-----~~R~~~~~ai~~i~~~~~p- 139 (318)
..|+++|++++..+|+.|++++|.|+.. +|. ..++.|+..|+..+. .....++.++..++....+
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 224 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 224 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccch
Confidence 4567888998899999999999999853 332 236678888875443 2233344445545433222
Q ss_pred ------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 140 ------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 140 ------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
..++|.|.+.+++++.+++..++.++.++...-........ ..++|.+..++.+.+..++..++.+++.++..
T Consensus 225 ~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~ 304 (510)
T 3ul1_B 225 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304 (510)
T ss_dssp CCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC
Confidence 25889999999999999999999999988753211111111 35789999999999999999999999888543
Q ss_pred hcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC-------hhhHHHhHHHHhccccccch-HHHHHH
Q psy10471 213 VYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG-------PVRILQYVLQGLFHPARKVR-DVYWKI 282 (318)
Q Consensus 213 ~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG-------~~~~~~~vl~~l~~~a~~~r-~~~w~i 282 (318)
-. .....+. ..++.+...+.++++++|..+..++..++..-. .....|.++..+-+...++| ++-|.+
T Consensus 305 ~~--~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL 382 (510)
T 3ul1_B 305 TD--EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382 (510)
T ss_dssp CH--HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CH--HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21 0001111 134455566667889999999999988864211 12255666666655555444 478888
Q ss_pred HHHhhc
Q psy10471 283 YNSLYI 288 (318)
Q Consensus 283 ~~~~~~ 288 (318)
.|....
T Consensus 383 ~Nl~~~ 388 (510)
T 3ul1_B 383 TNYTSG 388 (510)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 776543
No 31
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.29 E-value=1.7e-10 Score=121.27 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=168.6
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcC--CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLV--DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~--d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L 80 (318)
.+|++++.+++.++........++++++++ +++.+. |.+|.||.++++++|+++++.... ++.+.+++..+++.|
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRGL 555 (971)
T ss_dssp HHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHh
Confidence 378999999999988444467899999999 445454 569999999999999999976542 345666777777777
Q ss_pred hhchHHHHHHHHHHHHHHHhhhC----HH--HHHHHHHHhhccc--chhhHHHHHHHHHHHHhhc-----Ccc--cchHH
Q psy10471 81 KAHKKAIRRATVNTFGYIAKAIG----PH--DVLATLLNNLKVQ--ERQNRVCTTVAIAIVAETC-----SPF--TVLPA 145 (318)
Q Consensus 81 ~d~~~~vR~~av~~lg~la~~ig----p~--~~l~~Ll~~Lk~~--~~~~R~~~~~ai~~i~~~~-----~p~--~vip~ 145 (318)
+ +.|+..|..++..+++.++ || .++..+.+.+... +...+..+..+++.++... .|+ .+++.
T Consensus 556 -~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~ 632 (971)
T 2x1g_F 556 -N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSP 632 (971)
T ss_dssp -H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred -C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4 6789999999999887655 44 4566666666642 3467888899998876543 232 45555
Q ss_pred HHHHhc----CC--cc---hHHHHHHHHHHHHHHHHcc-------------ccccchhhhHHHHHHHHhcC--CHHHHHH
Q psy10471 146 LMNEYR----VP--EL---NVQNGVLKALSFLFEYIGE-------------MGKDYIYAVTPLLEDALMDR--DLVHRQT 201 (318)
Q Consensus 146 L~~~~~----d~--~~---~v~~~vl~al~~i~~~lg~-------------~~~~yl~~iiP~l~~~l~~~--~~~~R~~ 201 (318)
+++.+. .+ +. ......+..++.++.+++. .+.+|...++|.+..++... +..+.+.
T Consensus 633 l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~ 712 (971)
T 2x1g_F 633 CFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEA 712 (971)
T ss_dssp HHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 555443 22 11 1124566777777777754 35678889999999998653 6788999
Q ss_pred HHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh
Q psy10471 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV 258 (318)
Q Consensus 202 a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~ 258 (318)
+..+++.++...+ .+....+..+.+++...+.. .+. ..+++.++.++..+|.+
T Consensus 713 ~~~~~~~~~~~~~-~~~~p~l~~~~~~l~~~~~~-~~~--~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 713 ACSAMKHAITNLR-SSFQPMLQDLCLFIVASFQT-RCC--APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHHHHHHHHH-C--CTHHHHHHHHHHHHCC---CC--HHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHhhh-hhccccHHHHHHHHHHHHhc-CCc--hHHHHHHHHHHHHhCCC
Confidence 9999999888773 33445677777777655433 222 45899999999999984
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.27 E-value=2.3e-10 Score=112.65 Aligned_cols=285 Identities=17% Similarity=0.128 Sum_probs=186.8
Q ss_pred CchhhhHHHHHHHHHHHhccCcCCChHh-----HHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q psy10471 2 SSDKNLGIKIVQQIAILMGCAILPHLKN-----LVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE 75 (318)
Q Consensus 2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~-----l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~ 75 (318)
|.+...-+.++..+-..+...-.|+++. ++|.++..|+ ++++.++..|+++|+.+|....+....---...+..
T Consensus 87 s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~ 166 (529)
T 3tpo_A 87 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA 166 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 3444555666666666665666788764 4678888886 456999999999999999865432110000123445
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccchh-----hHHHHHHHHHHHHhhcCc---
Q psy10471 76 LLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQ-----NRVCTTVAIAIVAETCSP--- 139 (318)
Q Consensus 76 Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~-----~R~~~~~ai~~i~~~~~p--- 139 (318)
|+.+|++++..+|..|++++|.|+. -+|. ..++.|+..|+..+.. ....++.++..++....|
T Consensus 167 Lv~LL~s~~~~v~e~A~~aL~nLa~-~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 245 (529)
T 3tpo_A 167 FISLLASPHAHISEQAVWALGNIAG-AGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 245 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh
Confidence 6678899999999999999999985 3342 2366788888754431 223334444444432222
Q ss_pred ----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 140 ----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 140 ----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
..++|.|.+.+++++.+++..++.++.++...-........ ..++|.+..++.+.+..++..++.+++.++..-.
T Consensus 246 ~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence 25789999999999999999999999988753221111111 3588999999999999999999999988864321
Q ss_pred CCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC-------hhhHHHhHHHHhccccccch-HHHHHHHH
Q psy10471 215 GFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG-------PVRILQYVLQGLFHPARKVR-DVYWKIYN 284 (318)
Q Consensus 215 ~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG-------~~~~~~~vl~~l~~~a~~~r-~~~w~i~~ 284 (318)
.....+. ..++.+...+.++++++|..++.++..++..-. .....|.++..+.+...+++ ++-|.++|
T Consensus 326 --~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 403 (529)
T 3tpo_A 326 --EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN 403 (529)
T ss_dssp --HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred --HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0001111 133444555666889999999999988864211 12255666666666555444 48888887
Q ss_pred Hhhcc
Q psy10471 285 SLYIG 289 (318)
Q Consensus 285 ~~~~~ 289 (318)
....+
T Consensus 404 l~~~~ 408 (529)
T 3tpo_A 404 YTSGG 408 (529)
T ss_dssp HHHHS
T ss_pred HHcCC
Confidence 66533
No 33
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.25 E-value=2.3e-10 Score=120.36 Aligned_cols=249 Identities=8% Similarity=0.025 Sum_probs=166.5
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcC------CCCHHHHHHHHHHHHHHHhhCC--C-CCC----hhhHH
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLV------DEQQKVQENCIDLVGRIADRGP--E-YVS----AREWM 70 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~------d~~~~vR~aa~~~LG~la~~~~--~-~i~----~~~~~ 70 (318)
-|.+|..+++.++...|..+ ++.+++.+...++ +.+++.|++|+.++|.+|+++. . ... ..++.
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v---~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLV---TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cHHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 47789999999999877444 3344454444444 5679999999999999997532 1 110 11455
Q ss_pred HHHH-HHHHHhhhc---hHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhh-------
Q psy10471 71 RICF-ELLELLKAH---KKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAET------- 136 (318)
Q Consensus 71 ~il~-~Ll~~L~d~---~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~------- 136 (318)
+.+. .++..++++ ++.+|..|++++|++++.+.|. .+++.+++.|.+++..+|..++.|+..+.+.
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~ 533 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP 533 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence 5443 355666776 8889999999999999988764 4577788888877778899999999877652
Q ss_pred --------cCcc--cchHHHHHHhcCC----c-chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc-----CCH
Q psy10471 137 --------CSPF--TVLPALMNEYRVP----E-LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD-----RDL 196 (318)
Q Consensus 137 --------~~p~--~vip~L~~~~~d~----~-~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~-----~~~ 196 (318)
..|| .+++.|++.++.. . ......++++++.++...+..+.+|++.++|.+.+.+.. .++
T Consensus 534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~ 613 (960)
T 1wa5_C 534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP 613 (960)
T ss_dssp CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCH
T ss_pred cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCc
Confidence 1244 5666666666543 1 112368999999999999999999999999999888853 356
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
.++..+.++++.++..............+.|.+...+.....++...+.+.++.+....
T Consensus 614 ~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 614 RFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 77767777777777662211111222233333222222233456666777777776553
No 34
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.24 E-value=3.9e-10 Score=118.67 Aligned_cols=245 Identities=11% Similarity=0.121 Sum_probs=162.7
Q ss_pred chhhhHHHHHHHHHHHh-ccC--cCC-----ChHhH-HHHHHhhcCCC---CHHHHHHHHHHHHHHHhhCCCCCChhhHH
Q psy10471 3 SDKNLGIKIVQQIAILM-GCA--ILP-----HLKNL-VEIIEHGLVDE---QQKVQENCIDLVGRIADRGPEYVSAREWM 70 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~-g~~--~~P-----~l~~l-~~~l~~~l~d~---~~~vR~aa~~~LG~la~~~~~~i~~~~~~ 70 (318)
+.|++++.++|.+|.-+ |+. +.+ .+.++ ...+.|.++|+ +|.||.+|++++|+++++. ..+.+.
T Consensus 420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~l~ 495 (960)
T 1wa5_C 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQLI 495 (960)
T ss_dssp HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHHHH
Confidence 46899999999998732 221 222 44453 34567888887 9999999999999999974 356778
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhh---------------hCHH--HHHHHHHHhhccc-----chhhHHHHHH
Q psy10471 71 RICFELLELLKAHKKAIRRATVNTFGYIAKA---------------IGPH--DVLATLLNNLKVQ-----ERQNRVCTTV 128 (318)
Q Consensus 71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~---------------igp~--~~l~~Ll~~Lk~~-----~~~~R~~~~~ 128 (318)
+++..+++.|.|++..||..|..++..+.+. +.|| .++..|+..+... +....-.+..
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~ 575 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMR 575 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHH
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHH
Confidence 8888888999998888999999999997763 3454 5677777777642 1112234455
Q ss_pred HHHHHH----hhcCcc--cchHHHHHHh----cCCc-chHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCH
Q psy10471 129 AIAIVA----ETCSPF--TVLPALMNEY----RVPE-LNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDL 196 (318)
Q Consensus 129 ai~~i~----~~~~p~--~vip~L~~~~----~d~~-~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~ 196 (318)
+++.+. +.+.|| .+++.+++.+ ++++ ......++++++.++.+.+. .+.+|.+.++|.+...+.....
T Consensus 576 al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~ 655 (960)
T 1wa5_C 576 SIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ 655 (960)
T ss_dssp HHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhH
Confidence 555443 556676 6777666655 3333 34556689999988887443 5667888999999999987766
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh-hcccCCChHHHHHHHHHHHHHHHH
Q psy10471 197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVW-PNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~-~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
.+..-+.+.++.+.... .+..+.+..+.+++. +..++.. .....++..++.....
T Consensus 656 ~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~~~~~ 711 (960)
T 1wa5_C 656 EFIPYVFQIIAFVVEQS--ATIPESIKPLAQPLLAPNVWELK-GNIPAVTRLLKSFIKT 711 (960)
T ss_dssp TTHHHHHHHHHHHHHHC--SSCCTTTGGGHHHHTSGGGGCCT-TTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHcCHHHhcCC-CCchhHHHHHHHHHHh
Confidence 67777777777776654 234444555555544 1222222 2333455555554433
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.23 E-value=6e-10 Score=111.32 Aligned_cols=266 Identities=11% Similarity=0.083 Sum_probs=174.1
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|.+|..+++.+..... +..+. ..+++.+..+|.|++++||.+|+.+|++++...++.....-..+.+..|++.+++.+
T Consensus 138 Rk~A~~al~~i~~~~p-~~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~ 215 (591)
T 2vgl_B 138 RKTAAVCVAKLHDINA-QMVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT 215 (591)
T ss_dssp HHHHHHHHHHHHHSSC-CCHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhCh-hhccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC
Confidence 5677778888877322 22111 368899999999999999999999999999866532001122344556677778888
Q ss_pred HHHHHHHHHHHHHHHhhhCH---HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc--Ccc-------cchHHHHHHhcC
Q psy10471 85 KAIRRATVNTFGYIAKAIGP---HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC--SPF-------TVLPALMNEYRV 152 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~igp---~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~--~p~-------~vip~L~~~~~d 152 (318)
+|.+...++.++.++.. ++ ..+++.+...|++.+..++..++.++..+.... .|. .+.+.|.... +
T Consensus 216 ~~~q~~il~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~ 293 (591)
T 2vgl_B 216 EWGQIFILDCLSNYNPK-DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S 293 (591)
T ss_dssp HHHHHHHHHHHHTSCCC-SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T
T ss_pred chHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-c
Confidence 89998888888776532 22 256777877888766678888888887765432 121 3445666544 4
Q ss_pred CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhc
Q psy10471 153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPN 232 (318)
Q Consensus 153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~ 232 (318)
++++++-.++.++..+.+.-...+.+++..+ . ...+.+..+|..+++++..++.. ...+..+..+. ..
T Consensus 294 ~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~---~nv~~iv~~L~----~~ 361 (591)
T 2vgl_B 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDIMIRLASQ---ANIAQVLAELK----EY 361 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHHHHHTCCS---STHHHHHHHHH----HH
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHHHHHHCCh---hhHHHHHHHHH----HH
Confidence 7889999999999999886554455554432 1 22244588888888887666422 12233444444 34
Q ss_pred ccCCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhccccccchHHHHHHHHHh
Q psy10471 233 IFETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPARKVRDVYWKIYNSL 286 (318)
Q Consensus 233 i~d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~~~a~~~r~~~w~i~~~~ 286 (318)
+.+.+.++|..++.+|+.++....+ +.+.+.+++.+-+....++..-|..+..+
T Consensus 362 l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 362 ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4557788999888888888877643 33666666666555555555445544443
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.20 E-value=3.5e-11 Score=106.11 Aligned_cols=217 Identities=18% Similarity=0.128 Sum_probs=157.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--- 105 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--- 105 (318)
.+.+...|+++++.+|..|+++|..+.....+. ...+. ..+..|++.|++++..+|..|+++++.++..-...
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHH--HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCch--HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 556777788889999999999998877642211 11111 24556778889988899999999999998632221
Q ss_pred ----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471 106 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 174 (318)
Q Consensus 106 ----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~ 174 (318)
..++.|++.|++++...|..++.+++.++.... ...++|.+++.+++++..++..++.++..+...-.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN- 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence 368889999998777888888888887763321 23689999999999999999999999998875321
Q ss_pred ccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471 175 MGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEG 250 (318)
Q Consensus 175 ~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~ 250 (318)
.....+ ...+|.+.+++.+.++.+|..++.+++.++..-. +....+.. .++.+...+.+.++++|..+..++..
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 112222 4688999999999999999999999999874321 11111111 44555666667888999988888877
Q ss_pred HH
Q psy10471 251 LR 252 (318)
Q Consensus 251 i~ 252 (318)
++
T Consensus 249 l~ 250 (252)
T 4db8_A 249 LQ 250 (252)
T ss_dssp TC
T ss_pred Hh
Confidence 64
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.20 E-value=8.6e-11 Score=100.81 Aligned_cols=180 Identities=18% Similarity=0.169 Sum_probs=137.6
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH- 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~- 105 (318)
...|.+.++++++++.+|..|+++|+.++....+.. ..+. ..+..|++.|++++..+|..|+++++.++..-...
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQI--QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 345677888899999999999999999996543321 1111 24556778889988899999999999998422211
Q ss_pred ------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy10471 106 ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYI 172 (318)
Q Consensus 106 ------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l 172 (318)
..++.|++.|++++...|..++.+++.++.... ...++|.|++.+++++.+++..++.++..++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 257889999998887888888888887763211 236899999999999999999999999998863
Q ss_pred ccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471 173 GEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMAL 211 (318)
Q Consensus 173 g~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~ 211 (318)
+......+ ...+|.+.+++.+.+..+|+.++.+++.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 12222333 3588999999999999999999999988764
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.19 E-value=6.8e-11 Score=104.24 Aligned_cols=205 Identities=16% Similarity=0.122 Sum_probs=149.0
Q ss_pred hhhhHHHHHHHHHHHhccCcCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHh
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELL 80 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L 80 (318)
.+..++.++..+...........+ ...+|.++..++++++.+|..|+++|+.++....+.. ..+. ..+..|+++|
T Consensus 28 ~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL 105 (252)
T 4db8_A 28 EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI--QAVIDAGALPALVQLL 105 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHHcCCHHHHHHHH
Confidence 355667777554442111111111 2578899999999999999999999999997543211 1111 2455677888
Q ss_pred hhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHH
Q psy10471 81 KAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPAL 146 (318)
Q Consensus 81 ~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L 146 (318)
++++..+|..|+++++.++..-... ..++.|++.|++++...|..++.+++.++.... ...++|.|
T Consensus 106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 185 (252)
T 4db8_A 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH
Confidence 9988899999999999998532211 368889999988777888888888887764221 14789999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy10471 147 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMA 210 (318)
Q Consensus 147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la 210 (318)
++.+++++..++..++.++..++..-.......+ ...+|.+.+++.+.++.+|+.++.+++.++
T Consensus 186 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998742111122223 358899999999999999999999997775
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.17 E-value=1.4e-09 Score=106.79 Aligned_cols=294 Identities=13% Similarity=0.092 Sum_probs=183.9
Q ss_pred hhhHHHHHHHHHHHhccCcCCCh--HhHHHHHHhhcCCC-----CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVDE-----QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL 77 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l--~~l~~~l~~~l~d~-----~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll 77 (318)
|+.++.+|+.||.-. ...+..+ ...++.++..+++. ...+.+.++++++.++....+........+++..|.
T Consensus 160 ~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 238 (510)
T 3ul1_B 160 SEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238 (510)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence 567788888887511 0111111 12355566667653 345788999999999986655443444455666677
Q ss_pred HHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------Ccccch
Q psy10471 78 ELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SPFTVL 143 (318)
Q Consensus 78 ~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p~~vi 143 (318)
++++++...+|..|+++++.+++.-... .+++.|+..|+..+...+...+.+++.++... ....++
T Consensus 239 ~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l 318 (510)
T 3ul1_B 239 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 318 (510)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch
Confidence 8889988899999999999988532211 24677888888777778888888887664211 113578
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH
Q psy10471 144 PALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA 221 (318)
Q Consensus 144 p~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~ 221 (318)
|.|...+++++.+++..++.++..++..-.. ....+ ..++|.+.+.+.+.+..+|+.++.+++.++..... ..-..
T Consensus 319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~ 396 (510)
T 3ul1_B 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVY 396 (510)
T ss_dssp GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHH
Confidence 8898999999999999999999988753221 12222 35899999999999999999999999998765310 00001
Q ss_pred HHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH---cChh-hHH---------HhHHHHhccccccchHHHHHHHHHh
Q psy10471 222 LTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA---LGPV-RIL---------QYVLQGLFHPARKVRDVYWKIYNSL 286 (318)
Q Consensus 222 i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a---lG~~-~~~---------~~vl~~l~~~a~~~r~~~w~i~~~~ 286 (318)
+.+ .++.+...+...+++++..++++++.|... +|.. .+. ..+-....|++..+++.-.++.+..
T Consensus 397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111 123334555668899999999999888754 3322 222 2233333678885555555555666
Q ss_pred hccccccccccCCCC
Q psy10471 287 YIGGQDALISAYPRI 301 (318)
Q Consensus 287 ~~~~~~~~~p~~p~~ 301 (318)
|....++-..+.|..
T Consensus 477 f~~~~~~~~~~~~~~ 491 (510)
T 3ul1_B 477 FSVEEEEDQNVVPET 491 (510)
T ss_dssp CC-------------
T ss_pred CCCccccccccCCCC
Confidence 644333444455554
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.16 E-value=3.5e-09 Score=104.21 Aligned_cols=244 Identities=14% Similarity=0.097 Sum_probs=170.0
Q ss_pred hhhHHHHHHHHHHHhccCcCCChH------hHHHHHHhhcCCCC-----HHHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLK------NLVEIIEHGLVDEQ-----QKVQENCIDLVGRIADRGPEYVSAREWMRIC 73 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~------~l~~~l~~~l~d~~-----~~vR~aa~~~LG~la~~~~~~i~~~~~~~il 73 (318)
|+.++.+|+.||. -.|..+ ..++.++..+++.+ ..+.+.++++++.++....+........+++
T Consensus 179 ~e~A~~aL~nLa~-----~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 253 (529)
T 3tpo_A 179 SEQAVWALGNIAG-----AGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 253 (529)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----cCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence 5677778888775 122222 24566777776543 4568899999999998765544444445566
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------Cc
Q psy10471 74 FELLELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SP 139 (318)
Q Consensus 74 ~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p 139 (318)
..|.++++++...++..|+++++.++..-... .+++.|+..|+.++...+..++.+++.++... ..
T Consensus 254 p~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 254 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 66778889988899999999999988532211 24677888888777777888888887664211 11
Q ss_pred ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc
Q psy10471 140 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC 218 (318)
Q Consensus 140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~ 218 (318)
..++|.|...+++++.+++..++.++..++..-.......+ ..++|.+...+.+.+..+|..++.+++.++..... ..
T Consensus 334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~ 412 (529)
T 3tpo_A 334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQ 412 (529)
T ss_dssp TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HH
Confidence 36889999999999999999999999998753221111122 35899999999999999999999999988764310 00
Q ss_pred hhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 219 EDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 219 ~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
-..+.+ .++.+...+...+++++..++++++.|...
T Consensus 413 ~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 413 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 011111 233334555668899999999999888754
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.14 E-value=1.5e-09 Score=94.90 Aligned_cols=212 Identities=13% Similarity=0.071 Sum_probs=150.6
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------
Q psy10471 73 CFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS------- 138 (318)
Q Consensus 73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~------- 138 (318)
+..|++.|++++..+|..|+++++.++..-... ..++.|++.|++++...|..++.+++.++....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 455778889878899999999999998643322 368889999998777888888888887764321
Q ss_pred cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC
Q psy10471 139 PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF 216 (318)
Q Consensus 139 p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~ 216 (318)
...++|.+++.+++++.+++..++.++..++..-. .....+ ...+|.+.+++.+.++.+|..++.+++.++....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-- 160 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-- 160 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--
Confidence 12689999999999999999999999998884211 112222 3588999999999999999999999999976421
Q ss_pred CchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHHHHHHc-------ChhhHHHhHHHHhccccccchH-HHHHHHHHh
Q psy10471 217 GCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL-------GPVRILQYVLQGLFHPARKVRD-VYWKIYNSL 286 (318)
Q Consensus 217 ~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al-------G~~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~ 286 (318)
+....+. ..++.+...+.++++++|..++.++..++..- ......+.++..+-++...+++ +.|.+.|-.
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 1111111 14444556666788999999999999998521 1122456666666666666666 555555544
Q ss_pred h
Q psy10471 287 Y 287 (318)
Q Consensus 287 ~ 287 (318)
+
T Consensus 241 ~ 241 (252)
T 4hxt_A 241 S 241 (252)
T ss_dssp H
T ss_pred c
Confidence 4
No 42
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.11 E-value=4.8e-09 Score=109.83 Aligned_cols=258 Identities=12% Similarity=0.087 Sum_probs=167.8
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhc----CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGL----VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l----~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L 80 (318)
|..+..++..++.+.|..+. +.+++.+.+.+ .+.++..|++++.++|.+++...+... +.+..++. .+.-+
T Consensus 424 r~~~~~~L~~~~~~~~~~~l---~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~-~~l~~l~~-~l~~l 498 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELL---SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS-DVVPGLIG-LIPRI 498 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC-SHHHHHHH-HGGGS
T ss_pred HHHHHHHHHHHHHHccHHHH---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh-HHHHHHHH-HHHhC
Confidence 45566678888887775433 34444444444 557899999999999999998765332 22233333 22233
Q ss_pred hhchHHHHHHHHHHHHHHHhhhCH--H---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----cc--cchHHHHHH
Q psy10471 81 KAHKKAIRRATVNTFGYIAKAIGP--H---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----PF--TVLPALMNE 149 (318)
Q Consensus 81 ~d~~~~vR~~av~~lg~la~~igp--~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~--~vip~L~~~ 149 (318)
.++++.+|..+++++|+.++.+.+ . .+++.+++.|++ ..+|..++.++..+++.|. || .++..+.+.
T Consensus 499 ~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 499 SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV 576 (963)
T ss_dssp CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 435677999999999999987653 2 356667777754 5677888889988887765 44 455555555
Q ss_pred hcCC--cchHHHHHHHHHHHHHHHHc-cccccchhhhHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhhhcCCCc---
Q psy10471 150 YRVP--ELNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALMD-----RDLVHRQTACATIKHMALGVYGFGC--- 218 (318)
Q Consensus 150 ~~d~--~~~v~~~vl~al~~i~~~lg-~~~~~yl~~iiP~l~~~l~~-----~~~~~R~~a~~~i~~la~~~~~~~~--- 218 (318)
+..+ +.+.+..++++++.+..+.+ ..+.+|+..+++.+...|.. .++..+......++.++...+..+.
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~ 656 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH 656 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 5532 45677889999999998776 67889999999888877742 3566666555555444333332221
Q ss_pred ---------------------hhHHHHHHHhhhhcc--cCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471 219 ---------------------EDALTHLLNYVWPNI--FETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF 269 (318)
Q Consensus 219 ---------------------~~~i~hll~~l~~~i--~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~ 269 (318)
......+.+.+...+ +..++++...++.++++++..+|.++ +.|.+++.++
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~ 732 (963)
T 2x19_B 657 EDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLG 732 (963)
T ss_dssp C---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHH
Confidence 112222333221111 12467899999999999999999754 5566666553
No 43
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.07 E-value=5.2e-09 Score=109.92 Aligned_cols=257 Identities=11% Similarity=0.087 Sum_probs=159.6
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC-----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD-----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL 79 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d-----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~ 79 (318)
|..+-.++..++.+.|.. .++.+++.+.+.++. .++..|++|+.++|.++++...... ..+..++. ++..
T Consensus 438 R~~~~~~l~~~~~~~~~~---~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~-~l~~ 512 (971)
T 2x1g_F 438 RQDISDTFMYCYDVLNDY---ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMR-VLAE 512 (971)
T ss_dssp HHHHHHHHHHHHTTCTTH---HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHH-HHHh
Confidence 445566777777766633 333444444444433 6789999999999999987765432 23333333 3333
Q ss_pred hh--hchHHHHHHHHHHHHHHHhhhCHH-----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----cc--cchHHH
Q psy10471 80 LK--AHKKAIRRATVNTFGYIAKAIGPH-----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----PF--TVLPAL 146 (318)
Q Consensus 80 L~--d~~~~vR~~av~~lg~la~~igp~-----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~--~vip~L 146 (318)
+. |+++.||..+++++|++++.++++ .+++.+++.| + .+++..++.|+..+++.|. || .++..+
T Consensus 513 l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 513 IPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp SCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 44 457889999999999999988743 4566677777 3 5677788888888887775 33 455555
Q ss_pred HHHhcCC--cchHHHHHHHHHHHHHHHHc-cccccchhhhHHHHHHHHh----cC--CHHHHHHHHHHHHHHhhhhcCCC
Q psy10471 147 MNEYRVP--ELNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALM----DR--DLVHRQTACATIKHMALGVYGFG 217 (318)
Q Consensus 147 ~~~~~d~--~~~v~~~vl~al~~i~~~lg-~~~~~yl~~iiP~l~~~l~----~~--~~~~R~~a~~~i~~la~~~~~~~ 217 (318)
.+.+..+ +.+.+..+.++++.++.+++ ....+|+..+++.+...+. .. +...+......++.++.++...+
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcC
Confidence 5666553 35677899999999998775 5567777776666665543 22 44455555666655554443221
Q ss_pred c---------------hhHHHHHHHhhhhcc--cCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471 218 C---------------EDALTHLLNYVWPNI--FETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF 269 (318)
Q Consensus 218 ~---------------~~~i~hll~~l~~~i--~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~ 269 (318)
. .....++++.+...+ +..++++...++.+++.++.++|.++ ++|.+++.++
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIV 740 (971)
T ss_dssp C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 1 112222333222111 22467899999999999999998764 6666666663
No 44
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.06 E-value=8.9e-08 Score=80.68 Aligned_cols=216 Identities=18% Similarity=0.251 Sum_probs=162.8
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhh
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKA 101 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ 101 (318)
+..|=.+++..++..|.|+-|.||.+|+..+..+++.- ++-+.|.+..|+-+++. ..-..-.+--++||+++.
T Consensus 26 ~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-----~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~- 99 (253)
T 2db0_A 26 MAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-----EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK- 99 (253)
T ss_dssp HHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-----GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-
T ss_pred HHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-
Confidence 44566788899999999999999999999999998743 45677888888888776 344455677899999996
Q ss_pred hCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc
Q psy10471 102 IGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG 176 (318)
Q Consensus 102 igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~ 176 (318)
+.|. .+++.+..+++..+-+.|...+-++..|+...-. ..+.--++..+.+++..=+..+++ +..++|..-
T Consensus 100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLn----Fi~alGen~ 175 (253)
T 2db0_A 100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALN----FIEAMGENS 175 (253)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHH----HHHTCCTTT
T ss_pred hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHH----HHHHHhccC
Confidence 8887 4678889999988778888888888777654321 133444666667776444444443 334688887
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
..|+...+|.+..++.|+|..+|..+..++.++|..-. .+-++....+..+.|.+..|...+-+++..+...
T Consensus 176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np------klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND------KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 88998899999999999999999999999999988752 1222222334666778899999999999888643
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.06 E-value=1.5e-08 Score=101.12 Aligned_cols=278 Identities=13% Similarity=0.036 Sum_probs=185.9
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA 86 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~ 86 (318)
...+++... ..|.++.... +-++..++++++.+|+.+-.+++.+++..++ ...-++..+.+.|+++++.
T Consensus 33 ~~~kli~~~--~~G~d~~~~~----~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e-----~~~l~~n~l~kdL~~~n~~ 101 (591)
T 2vgl_B 33 AVKKVIAAM--TVGKDVSSLF----PDVVNCMQTDNLELKKLVYLYLMNYAKSQPD-----MAIMAVNSFVKDCEDPNPL 101 (591)
T ss_dssp HHHHHHHHH--HTTCCCGGGH----HHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH-----HHHTTHHHHGGGSSSSSHH
T ss_pred HHHHHHHHH--HCCCChHHHH----HHHHHHhCCCCHHHHHHHHHHHHHHcccCch-----HHHHHHHHHHHHcCCCCHH
Confidence 344455433 3477665544 4455578899999999999999999885322 2222344566777888999
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-----cchHHHHHHhcCCcchHHHHH
Q psy10471 87 IRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-----TVLPALMNEYRVPELNVQNGV 161 (318)
Q Consensus 87 vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-----~vip~L~~~~~d~~~~v~~~v 161 (318)
+|..|++++|.++..--...+.+.+.+.|++.+-.+|..++.++..++..+ |- .++|.+...+.|+++.++..+
T Consensus 102 ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A 180 (591)
T 2vgl_B 102 IRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANA 180 (591)
T ss_dssp HHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHH
Confidence 999999999987632111246777888888777789999999999888743 42 477889999999999999999
Q ss_pred HHHHHHHHHHHccc-cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHH
Q psy10471 162 LKALSFLFEYIGEM-GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL 240 (318)
Q Consensus 162 l~al~~i~~~lg~~-~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~v 240 (318)
+.++..+.+.-... +.+..+..++.+.+.+.+.++..+.....+++.+.+ ..++....+++.+.+.+.+.++.|
T Consensus 181 ~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~-----~~~~~~~~~l~~l~~~l~~~~~~V 255 (591)
T 2vgl_B 181 VAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP-----KDDREAQSICERVTPRLSHANSAV 255 (591)
T ss_dssp HHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC-----CSHHHHHHHHHHHTTCSCSSTTHH
T ss_pred HHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHcCCChHH
Confidence 99999887643222 234446667777788888999888877776654432 123445678888888888899999
Q ss_pred HHHHHHHHHHHHHHc--ChhhHH---HhHHHH---hccccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471 241 VQAFMDAVEGLRVAL--GPVRIL---QYVLQG---LFHPARKVRDVYWKIYNSLYIGGQDALISAYPRI 301 (318)
Q Consensus 241 r~~ii~~i~~i~~al--G~~~~~---~~vl~~---l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~ 301 (318)
+..++.++..+...+ +++.+. +.+.+. +......+|-.--+.++.+...+.+.+.+++..+
T Consensus 256 ~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~ 324 (591)
T 2vgl_B 256 VLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF 324 (591)
T ss_dssp HHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh
Confidence 998888888776544 223222 222232 2333444444434444444444456666655433
No 46
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.04 E-value=1.2e-08 Score=106.85 Aligned_cols=277 Identities=12% Similarity=0.095 Sum_probs=181.5
Q ss_pred hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
+|++++.++|.++........++++.+++.+ +.+.+++|.||.++++++|+++++.... ++.+.+++..+++.|++
T Consensus 465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~- 540 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGN- 540 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC-
Confidence 6889999999999855446788999999954 4555568999999999999999864431 35566677777777766
Q ss_pred hHHHHHHHHHHHHHHHhhhC----HH--HHHHHHHHhhccc--chhhHHHHHHHHHHHHhhc-----Ccc--cchHHHHH
Q psy10471 84 KKAIRRATVNTFGYIAKAIG----PH--DVLATLLNNLKVQ--ERQNRVCTTVAIAIVAETC-----SPF--TVLPALMN 148 (318)
Q Consensus 84 ~~~vR~~av~~lg~la~~ig----p~--~~l~~Ll~~Lk~~--~~~~R~~~~~ai~~i~~~~-----~p~--~vip~L~~ 148 (318)
+.||..|..+|..+++.++ |+ .++..|...+... +...|..+..+++.++... .|+ .+++.+.+
T Consensus 541 -~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~ 619 (963)
T 2x19_B 541 -PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQ 619 (963)
T ss_dssp -GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7799999999999987654 44 4566666666532 3467888899998776433 233 66766666
Q ss_pred Hhc----CC-cchHH---HHHHHHHHHHHHHHccc----------------------cccchhhhHHHHHHHHhc--CCH
Q psy10471 149 EYR----VP-ELNVQ---NGVLKALSFLFEYIGEM----------------------GKDYIYAVTPLLEDALMD--RDL 196 (318)
Q Consensus 149 ~~~----d~-~~~v~---~~vl~al~~i~~~lg~~----------------------~~~yl~~iiP~l~~~l~~--~~~ 196 (318)
.+. .+ +.+.+ ...+.+++.++++++.. +.++...++|.+..++.. .+.
T Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 699 (963)
T 2x19_B 620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDA 699 (963)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCch
Confidence 553 11 22222 46778888899988742 344667889998888853 357
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh-----h---HHHhHHHHh
Q psy10471 197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----R---ILQYVLQGL 268 (318)
Q Consensus 197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~-----~---~~~~vl~~l 268 (318)
.+++.++.+++.++..++ ..+...+..+.+.++....... ...++..++.+....|.+ . +.+.++..+
T Consensus 700 ~v~e~~~~~l~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~ 775 (963)
T 2x19_B 700 QVVEAVCAIFEKSVKTLL-DDFAPMVPQLCEMLGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVT 775 (963)
T ss_dssp HHHHHHHHHHHHHHHHSS-STTGGGHHHHHHHHHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc-ccccccHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 889999999998877653 2334455555555443322111 124666777777733332 1 222222222
Q ss_pred c-------cccccchHHHHHHHHHhhcc
Q psy10471 269 F-------HPARKVRDVYWKIYNSLYIG 289 (318)
Q Consensus 269 ~-------~~a~~~r~~~w~i~~~~~~~ 289 (318)
+ ...+.+++.|-.+++.+-..
T Consensus 776 l~~~~~~~~~~pd~~~~~f~ll~~~~~~ 803 (963)
T 2x19_B 776 LTLFQQGPRDHPDIVDSFMQLLAQALKR 803 (963)
T ss_dssp HHHHHHCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcccCchHHHHHHHHHHHHHHh
Confidence 1 12356777777777665443
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.04 E-value=1e-08 Score=103.05 Aligned_cols=172 Identities=12% Similarity=0.069 Sum_probs=115.0
Q ss_pred chHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhc---ccchhhHHHHHHHHHHHHhhcCcc---cchHHHHHHh
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLK---VQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEY 150 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk---~~~~~~R~~~~~ai~~i~~~~~p~---~vip~L~~~~ 150 (318)
.++|.+...++.++.++. -+|. +++..+++.+. .....+...++.++..+.. .|. .+++.|...+
T Consensus 246 ~~~~~q~~il~~L~~l~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L 322 (618)
T 1w63_A 246 SDPFLQVRILRLLRILGR-NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFL 322 (618)
T ss_dssp SCHHHHHHHHHHHHHHTT-TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 368888889999988875 3443 23344433221 1122344444444433211 121 3566777778
Q ss_pred cCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh
Q psy10471 151 RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVW 230 (318)
Q Consensus 151 ~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~ 230 (318)
.+++++++..++.++..+...-...+.+|. +.+..++.+.|..+|..+.+++..++... ..+..+..++.|+.
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~~~---nv~~iv~eL~~~l~ 395 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVNGN---NIRGMMKELLYFLD 395 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCCSS---STHHHHHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHcccc---cHHHHHHHHHHHHH
Confidence 888999999999999999876544444444 56677778999999999999998885532 34566667777653
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHh
Q psy10471 231 PNIFETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGL 268 (318)
Q Consensus 231 ~~i~d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l 268 (318)
+.+.++|..++.+|+.++....+ +.+.+.++..+
T Consensus 396 ----~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL 431 (618)
T 1w63_A 396 ----SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVL 431 (618)
T ss_dssp ----HCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred ----hCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 36789999999999999998754 33666666555
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.95 E-value=9.9e-08 Score=95.81 Aligned_cols=264 Identities=14% Similarity=0.094 Sum_probs=174.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA 109 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~ 109 (318)
.++.+...+.+.++.+|.+|+.+|+.++...+.. +.+....++..++|+..++|+.|++.++.+++.-.-..++.
T Consensus 314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~-----~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~ 388 (618)
T 1w63_A 314 AINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA-----VQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMK 388 (618)
T ss_dssp HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH-----HGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH-----HHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHH
Confidence 4566777788889999999999999999864322 22233345677899889999999999999987655456788
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471 110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187 (318)
Q Consensus 110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l 187 (318)
.|++.+.+.+...|..++.+|+.++..+.|. ..++.+++.+++....+...++.++..++.. ..... ..+++.+
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~-~p~l~---~~~v~~L 464 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN-SVEMH---AYTVQRL 464 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH-SCSTH---HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc-ChhHH---HHHHHHH
Confidence 8888888777889999999999999988763 7899999999887766776677777777764 22221 3355666
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHHhhhhcCC---C------chhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471 188 EDALMD--RDLVHRQTACATIKHMALGVYGF---G------CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256 (318)
Q Consensus 188 ~~~l~~--~~~~~R~~a~~~i~~la~~~~~~---~------~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG 256 (318)
...+.+ ......+.+++.+|..+..+... + ..+.+..++..++..- .+++.+|..++.++.++.....
T Consensus 465 ~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~ 543 (618)
T 1w63_A 465 YKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFT 543 (618)
T ss_dssp HHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCc
Confidence 666654 22344456899999988765321 0 1112222222223321 5789999999999999988775
Q ss_pred hh-hHHHhHHHHhc-cccccchH---HHHHHHHHhhccccccccccCCCCCcc
Q psy10471 257 PV-RILQYVLQGLF-HPARKVRD---VYWKIYNSLYIGGQDALISAYPRIQND 304 (318)
Q Consensus 257 ~~-~~~~~vl~~l~-~~a~~~r~---~~w~i~~~~~~~~~~~~~p~~p~~~~~ 304 (318)
.. .....++.... +.+..+|+ .||+++.. .......+..-.|.+++.
T Consensus 544 ~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~-~~~~~~~vl~~~P~~~~~ 595 (618)
T 1w63_A 544 CTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK-YDHMRSALLERMPVMEKV 595 (618)
T ss_dssp SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT-TTTHHHHHHSCCCCCCC-
T ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-cHHHHHHHhhcCCCCCcc
Confidence 42 22333333332 23334555 78888754 211112233336666543
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.95 E-value=9.2e-09 Score=94.26 Aligned_cols=176 Identities=10% Similarity=0.082 Sum_probs=124.7
Q ss_pred hhhhHHHHHHHHHHHhcc--CcCCChHhHHHHHHh-hcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGC--AILPHLKNLVEIIEH-GLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLE 78 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~--~~~P~l~~l~~~l~~-~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~ 78 (318)
+|..++..+.++..-... .+ .-...+|.+++ +|+++++.+|..|+++||.++.+.+..- ..+. ..+..|++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~--~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~--~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ--EQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHH--HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHH--HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH--HHHHHCCCHHHHHH
Confidence 455556666555542111 11 11245677888 9999999999999999999998654311 0111 24555677
Q ss_pred Hhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchH
Q psy10471 79 LLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV 157 (318)
Q Consensus 79 ~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v 157 (318)
+|++ ++..+|+.|+++++.++..-.|. ...+.. ...+|.|...+++++..+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~--~~~~~~--------------------------~ggi~~L~~lL~~~d~~v 183 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAG--LLQFLR--------------------------LDGFSVLMRAMQQQVQKL 183 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHH--HHHHHH--------------------------TTHHHHHHHHHHSSCHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHH--HHHHHH--------------------------CCCHHHHHHHHcCCCHHH
Confidence 7786 47889999999999988633221 111100 145777888888888999
Q ss_pred HHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 158 QNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 158 ~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
+..++.++.+++.. +.....++ ..++|.+..++.+.+..+|..++.+++.++..
T Consensus 184 ~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 184 KVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999886 44445555 35899999999999999999999999998766
No 50
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.92 E-value=8.5e-09 Score=109.15 Aligned_cols=282 Identities=12% Similarity=0.115 Sum_probs=179.5
Q ss_pred hhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLV-----DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL 77 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~-----d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll 77 (318)
.+++++-++|.++..... ...|++++++|.++.++. |.++.||..+++++|+++++... .++.+.+++..|+
T Consensus 469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~--~~~~L~~vl~~L~ 546 (1023)
T 4hat_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLF 546 (1023)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 478899999998863322 267999999999988876 45677899999999999997642 2677888888999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHhhhCHHH----------HHHHHHHhhc----ccchhhHHHHHHHHHHHHhhcCcc---
Q psy10471 78 ELLKAHKKAIRRATVNTFGYIAKAIGPHD----------VLATLLNNLK----VQERQNRVCTTVAIAIVAETCSPF--- 140 (318)
Q Consensus 78 ~~L~d~~~~vR~~av~~lg~la~~igp~~----------~l~~Ll~~Lk----~~~~~~R~~~~~ai~~i~~~~~p~--- 140 (318)
+.+.++++.+..+|.++|..+++.++..- .++.++..+. .-+.+.+..+++|++.+.....+.
T Consensus 547 ~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~ 626 (1023)
T 4hat_C 547 EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAER 626 (1023)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhH
Confidence 99988888999999999999999876431 2444444332 223356678899999877655431
Q ss_pred -----cchHHHHHHhc--------CCcc-----hHH--HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC-----
Q psy10471 141 -----TVLPALMNEYR--------VPEL-----NVQ--NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD----- 195 (318)
Q Consensus 141 -----~vip~L~~~~~--------d~~~-----~v~--~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~----- 195 (318)
.+++.+...++ +|+. .++ ..+++++..++.++|..|.+|+..+.|.+.++.+.-+
T Consensus 627 ~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~ 706 (1023)
T 4hat_C 627 NRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISA 706 (1023)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443331 2221 122 6689999999999999999999888888887753211
Q ss_pred ------------H------HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccC----CChHHH-HHHHHHHHHHH
Q psy10471 196 ------------L------VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE----TSPHLV-QAFMDAVEGLR 252 (318)
Q Consensus 196 ------------~------~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d----~~~~vr-~~ii~~i~~i~ 252 (318)
+ .+|+....++.+-+.... +.+....++.+-++..+.. ..|+.| ..++.....++
T Consensus 707 ~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~--~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv 784 (1023)
T 4hat_C 707 QVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVV 784 (1023)
T ss_dssp HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS--CHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHH
T ss_pred HHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHH
Confidence 1 223334444444333321 2222233333332222222 223332 35777888888
Q ss_pred HHcChh--hHHHhHHHHhc-----------cccccchHHHHHHHHHhhcc
Q psy10471 253 VALGPV--RILQYVLQGLF-----------HPARKVRDVYWKIYNSLYIG 289 (318)
Q Consensus 253 ~alG~~--~~~~~vl~~l~-----------~~a~~~r~~~w~i~~~~~~~ 289 (318)
.-+|.. ...|.++..+| ++.+.-|+.+-+++.++-..
T Consensus 785 ~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~ 834 (1023)
T 4hat_C 785 EKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEK 834 (1023)
T ss_dssp HHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 888853 12333333332 34455678888888776444
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.92 E-value=1.7e-08 Score=104.12 Aligned_cols=261 Identities=12% Similarity=0.029 Sum_probs=176.0
Q ss_pred hhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 4 DKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
-|..++.+|+.|+..... ......+..++.++..|++ .++.+|+.|+.+|..++..........+ ...+..|+++|+
T Consensus 166 vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~ 244 (780)
T 2z6g_A 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLG 244 (780)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHc
Confidence 366788888888873321 1112234678888888875 4899999999999998864211000111 135556778889
Q ss_pred hchHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------CcccchHHHH
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SPFTVLPALM 147 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p~~vip~L~ 147 (318)
+++..+|..|+++++.++..-.. ...++.|++.|+..+...|..++.++..++..+ .....++.|+
T Consensus 245 ~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv 324 (780)
T 2z6g_A 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 324 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH
Confidence 98889999999999999865332 135778999998766677777777777665321 1236789999
Q ss_pred HHhcCCcchH-HHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH
Q psy10471 148 NEYRVPELNV-QNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH 224 (318)
Q Consensus 148 ~~~~d~~~~v-~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h 224 (318)
+.+++.+.+. +..++.++..+... ....+.+ ..++|.+..++.+.+..+++.++.++..++...... .....
T Consensus 325 ~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~ 399 (780)
T 2z6g_A 325 NIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEG 399 (780)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTS--TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcC--hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhh
Confidence 9999876554 45667777766542 2222222 346899999999999999999999999988654321 12234
Q ss_pred HHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh-------hhHHHhHHHHhcc
Q psy10471 225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFH 270 (318)
Q Consensus 225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~-------~~~~~~vl~~l~~ 270 (318)
.++.+...+.+.++++|..++.++..++..-.. ....+.++..+.+
T Consensus 400 ~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 555556667778999999999988887542111 1245666666655
No 52
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.89 E-value=1.5e-07 Score=91.36 Aligned_cols=240 Identities=10% Similarity=0.076 Sum_probs=156.0
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH----
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP---- 104 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp---- 104 (318)
..++.+.+.+++.++.+++.++++|+.++...+...... ..+..|+++++++++.+|..|.++++.++.. ++
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~ 302 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKM 302 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCH---HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHH---hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 568889999999999999999999999998765433233 4555566778888889999999999999763 23
Q ss_pred ----HHHHHHHHHhhcccc--hhhHHHHHHHHHHHHhhcC----------cccchHHHHHHhcCCc-chHHHHHHHHHHH
Q psy10471 105 ----HDVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCS----------PFTVLPALMNEYRVPE-LNVQNGVLKALSF 167 (318)
Q Consensus 105 ----~~~l~~Ll~~Lk~~~--~~~R~~~~~ai~~i~~~~~----------p~~vip~L~~~~~d~~-~~v~~~vl~al~~ 167 (318)
...++.|+..|+..+ ...|.....+++.++.... ....+|.|.+.++++. ..++..++.++..
T Consensus 303 ~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~n 382 (529)
T 1jdh_A 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382 (529)
T ss_dssp HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHH
Confidence 135777888887532 3677777778876653211 1257999999999886 4899999999998
Q ss_pred HHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHH----------------------HhhhhcCCCchhHHH
Q psy10471 168 LFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKH----------------------MALGVYGFGCEDALT 223 (318)
Q Consensus 168 i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~----------------------la~~~~~~~~~~~i~ 223 (318)
+.. +......+ ..++|.+.+.+.+.+..+|+.++++++. ++... .....+.
T Consensus 383 l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~---~~~~~l~ 457 (529)
T 1jdh_A 383 LAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV---HNRIVIR 457 (529)
T ss_dssp HTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH---HHHHHHH
T ss_pred Hhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc---hHHHHHh
Confidence 875 33222333 3588999999988888888766655443 21110 0000010
Q ss_pred --HHHHhhhhcccCCChHHHHHHHHHHHHHHHH------cChhhHHHhHHHHhccccccchH
Q psy10471 224 --HLLNYVWPNIFETSPHLVQAFMDAVEGLRVA------LGPVRILQYVLQGLFHPARKVRD 277 (318)
Q Consensus 224 --hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a------lG~~~~~~~vl~~l~~~a~~~r~ 277 (318)
..++.+...+.+.+++++..+..++..++.. +......+.+...+.|++..++.
T Consensus 458 ~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~ 519 (529)
T 1jdh_A 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 519 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHH
T ss_pred ccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHH
Confidence 1224445666778899999888888776521 11122445566666677765444
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.87 E-value=1.8e-07 Score=97.73 Aligned_cols=227 Identities=17% Similarity=0.247 Sum_probs=174.6
Q ss_pred CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE--YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 22 ~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~--~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
...| ..++..+...++|..+. +.|+.+++.+|+..+. .+ -+.+.+++..+++...|....||.+|-.+.-.+.
T Consensus 49 ~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~ 123 (986)
T 2iw3_A 49 HDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKDKEIQSVASETLISIV 123 (986)
T ss_dssp SSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3445 37888888888886555 9999999999975543 22 4566677777888888888889999999999999
Q ss_pred hhhCHH---HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCCcchHHHHHHHHHHHH
Q psy10471 100 KAIGPH---DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALSFL 168 (318)
Q Consensus 100 ~~igp~---~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~~~~v~~~vl~al~~i 168 (318)
+.+.|+ .+++.|++.|+...+ |.+......+..+++.+ | -.++|.+...+.|--+++..+..+++..+
T Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 124 NAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp HHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 999996 578888888876555 78888888888877665 4 17899999999998889988888888877
Q ss_pred HHHHcc-ccccchh----------------------------------hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 169 FEYIGE-MGKDYIY----------------------------------AVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 169 ~~~lg~-~~~~yl~----------------------------------~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
|..++. ...+++| -++|.+.+-+++++...+++++..++.|+.-+
T Consensus 203 ~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 203 TETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp GGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 777665 3444443 34577777778888888999999998887666
Q ss_pred cCCCchhHHHHHHHhhhhcccC-----CChHHHHHHHHHHHHHHHHcCh
Q psy10471 214 YGFGCEDALTHLLNYVWPNIFE-----TSPHLVQAFMDAVEGLRVALGP 257 (318)
Q Consensus 214 ~~~~~~~~i~hll~~l~~~i~d-----~~~~vr~~ii~~i~~i~~alG~ 257 (318)
........++|.++|.+.- .+|++|.-.-.++..+..+.|.
T Consensus 283 ---~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 283 ---EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp ---CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 4545566777887877762 4799999888888777776553
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.86 E-value=6.3e-07 Score=92.24 Aligned_cols=275 Identities=8% Similarity=0.025 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC--C---CCChhhHHHHHHHHHH
Q psy10471 6 NLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP--E---YVSAREWMRICFELLE 78 (318)
Q Consensus 6 ~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~--~---~i~~~~~~~il~~Ll~ 78 (318)
..++.+++.++. +...+-++. .+ |.+..++++.++.+|.-|+.+|..++..++ + .+.-....+++..+.+
T Consensus 308 ~~A~~al~~aa~--~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~ 384 (810)
T 3now_A 308 RVACECLIAASS--KKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR 384 (810)
T ss_dssp HHHHHHHHHHTT--SHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHH
Confidence 356677777544 232222222 23 888888988889999999999999986433 1 1111224455555556
Q ss_pred Hhhhc--hHHHHHHHHHHHHHHHhhhCHH---------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC---------
Q psy10471 79 LLKAH--KKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--------- 138 (318)
Q Consensus 79 ~L~d~--~~~vR~~av~~lg~la~~igp~---------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~--------- 138 (318)
+|.++ ...+|+.|++++++++. +|. .+++.|+..|+.++....+.++.+++.++....
T Consensus 385 lL~~~~~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~ 462 (810)
T 3now_A 385 FLIKPGKDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMI 462 (810)
T ss_dssp HHHCSSCCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCG
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHH
Confidence 66775 67799999999999874 432 468889999987777788888888887764210
Q ss_pred ------------------------------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHH
Q psy10471 139 ------------------------------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPL 186 (318)
Q Consensus 139 ------------------------------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~ 186 (318)
-..++|.|.+.++.++++++..++.++.++.. ...+...+ ...+|.
T Consensus 463 ~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~--d~~~r~~Vv~~Gaip~ 540 (810)
T 3now_A 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG--LKELRGKVVQEGGVKA 540 (810)
T ss_dssp GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHH
T ss_pred HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHH
Confidence 01479999999999999999999999999974 33455555 348899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-c-hhHHHHHHHhhhhcccCCChHH-HHHHHHHHHHHHHH-------cC
Q psy10471 187 LEDALMDRDLVHRQTACATIKHMALGVYGFG-C-EDALTHLLNYVWPNIFETSPHL-VQAFMDAVEGLRVA-------LG 256 (318)
Q Consensus 187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~-~~~i~hll~~l~~~i~d~~~~v-r~~ii~~i~~i~~a-------lG 256 (318)
+.+++.+.+...|+.++++++.++......- + .......++.+...+..+...+ +..++.++..++.. +-
T Consensus 541 Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii 620 (810)
T 3now_A 541 LLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRII 620 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999876532100 0 0011122333334443232223 33455565555432 11
Q ss_pred hhhHHHhHHHHhccccccchH-HHHHHHHHhh
Q psy10471 257 PVRILQYVLQGLFHPARKVRD-VYWKIYNSLY 287 (318)
Q Consensus 257 ~~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~~ 287 (318)
.....|.+...+.|.+..++. ..|.++|.+.
T Consensus 621 ~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 621 KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 123577888888888877666 5666666543
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.86 E-value=2.4e-07 Score=93.10 Aligned_cols=246 Identities=12% Similarity=0.027 Sum_probs=168.9
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH---
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP--- 104 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp--- 104 (318)
..+|.+.++|+++++.+|+.|+.+|++++..............++..|++.|++ ++..+|+.|..++..++..-..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 357888888899999999999999999998654211011122455667777776 4778999999999887753221
Q ss_pred ---HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471 105 ---HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE 174 (318)
Q Consensus 105 ---~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~ 174 (318)
...++.|++.|+.++...|..++.++..++.... ...++|.|++.+++++..++..++.++..+... ..
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~ 172 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQ 172 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc-Cc
Confidence 1368889999988777888888888887764322 136899999999998888888888888777642 11
Q ss_pred ccccch--hhhHHHHHHHHhcCC-HHHHHHHHHHHHHHhhhhcCCCchhHHH-HHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471 175 MGKDYI--YAVTPLLEDALMDRD-LVHRQTACATIKHMALGVYGFGCEDALT-HLLNYVWPNIFETSPHLVQAFMDAVEG 250 (318)
Q Consensus 175 ~~~~yl--~~iiP~l~~~l~~~~-~~~R~~a~~~i~~la~~~~~~~~~~~i~-hll~~l~~~i~d~~~~vr~~ii~~i~~ 250 (318)
..+..+ ...+|.+.+++++.+ ...+..++.++..++..-. .....+. ..++.+...+.+.+++++..++.++..
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 112122 346888999998665 5667788888877764211 1111111 134555666677889999999999999
Q ss_pred HHHHcCh----hhHHHhHHHHhccccccchH
Q psy10471 251 LRVALGP----VRILQYVLQGLFHPARKVRD 277 (318)
Q Consensus 251 i~~alG~----~~~~~~vl~~l~~~a~~~r~ 277 (318)
++..-.. ....|.++..+.+....+++
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~ 281 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVT 281 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHH
Confidence 9865322 34666677766666665555
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.83 E-value=3.7e-07 Score=94.09 Aligned_cols=241 Identities=10% Similarity=0.082 Sum_probs=159.4
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH----
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP---- 104 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp---- 104 (318)
..++.++..+++.++.+++.|+++|+.++.......... .++..|+++|++.+..+|..|+++++.++..-..
T Consensus 360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~---~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~ 436 (780)
T 2z6g_A 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436 (780)
T ss_dssp THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCH---HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhh---hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 357889999999999999999999999998765433233 4555566778888889999999999999853211
Q ss_pred ---HHHHHHHHHhhccc-ch-hhHHHHHHHHHHHHhhcC----------cccchHHHHHHhcCCcc-hHHHHHHHHHHHH
Q psy10471 105 ---HDVLATLLNNLKVQ-ER-QNRVCTTVAIAIVAETCS----------PFTVLPALMNEYRVPEL-NVQNGVLKALSFL 168 (318)
Q Consensus 105 ---~~~l~~Ll~~Lk~~-~~-~~R~~~~~ai~~i~~~~~----------p~~vip~L~~~~~d~~~-~v~~~vl~al~~i 168 (318)
...++.|++.|+.. +. .+|..++.+++.++.... ....+|.|++.++.++. .++..++.++..+
T Consensus 437 i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nL 516 (780)
T 2z6g_A 437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516 (780)
T ss_dssp HHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 13577888888753 32 678888888887653211 13579999999988875 8999999999998
Q ss_pred HHHHccccccch--hhhHHHHHHHHhcCCHH----------------------HHHHHHHHHHHHhhhhcCCCchhHH--
Q psy10471 169 FEYIGEMGKDYI--YAVTPLLEDALMDRDLV----------------------HRQTACATIKHMALGVYGFGCEDAL-- 222 (318)
Q Consensus 169 ~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~----------------------~R~~a~~~i~~la~~~~~~~~~~~i-- 222 (318)
.. +......+ ..++|.+.+++.+.+.. ++..++.+++.++.... ....+
T Consensus 517 a~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~---~~~~l~~ 591 (780)
T 2z6g_A 517 AL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH---NRIVIRG 591 (780)
T ss_dssp HS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH---HHHHHHH
T ss_pred hc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh---hHHHHHH
Confidence 75 22222233 35788888888765433 44556666665543110 00111
Q ss_pred HHHHHhhhhcccCCChHHHHHHHHHHHHHHH------HcChhhHHHhHHHHhccccccchH
Q psy10471 223 THLLNYVWPNIFETSPHLVQAFMDAVEGLRV------ALGPVRILQYVLQGLFHPARKVRD 277 (318)
Q Consensus 223 ~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~------alG~~~~~~~vl~~l~~~a~~~r~ 277 (318)
...++.+...+.+.++.++..+..++..++. .+......+.+...+-|++..+|.
T Consensus 592 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~ 652 (780)
T 2z6g_A 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 652 (780)
T ss_dssp TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 1123444566677889999999988887752 122222344555555555544433
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.83 E-value=3.3e-08 Score=84.45 Aligned_cols=175 Identities=18% Similarity=0.128 Sum_probs=127.8
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------ccc
Q psy10471 76 LLELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFT 141 (318)
Q Consensus 76 Ll~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~ 141 (318)
|..+|++++..+|..|+++++.++..-... ..++.|++.|++++...|..++.+++.++.... ...
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence 446668888999999999999998532222 368889999998777888888888887763211 135
Q ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchh
Q psy10471 142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED 220 (318)
Q Consensus 142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~ 220 (318)
++|.+++.+++++..++..++.++..+...-.......+ ...+|.+.+++++.+..+|..++.++..++.... ....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~ 174 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQKQ 174 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH--HHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc--HHHH
Confidence 899999999999999999999999988753111111222 4588999999999999999999999999876421 1111
Q ss_pred HHH--HHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471 221 ALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLR 252 (318)
Q Consensus 221 ~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~ 252 (318)
.+. ..++.+...+.++++++|..+..++..++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 110 13344455556688999999999998875
No 58
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.81 E-value=2.7e-07 Score=89.43 Aligned_cols=246 Identities=12% Similarity=0.042 Sum_probs=165.3
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH--
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP-- 104 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp-- 104 (318)
...+|.+..+++++++.+|..|+.+|+.++.........-.-...+..|++.|++ ++..+|+.|..++..++..-.+
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 3468888899999999999999999999996432100000112355567777776 4678999999999998754221
Q ss_pred ----HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Q psy10471 105 ----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 173 (318)
Q Consensus 105 ----~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg 173 (318)
...++.|++.|++++...|..++.++..++.... ...++|.|++.+++++..++..++.++..+... .
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~-~ 174 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-N 174 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-C
Confidence 1368889999998777788888888887764321 136899999999998888888888888766531 1
Q ss_pred cccccch--hhhHHHHHHHHhcCCH-HHHHHHHHHHHHHhhhhcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHH
Q psy10471 174 EMGKDYI--YAVTPLLEDALMDRDL-VHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAV 248 (318)
Q Consensus 174 ~~~~~yl--~~iiP~l~~~l~~~~~-~~R~~a~~~i~~la~~~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i 248 (318)
...+.-+ ...+|.+.+++++.+. ..+..++.++..++..- ...+.+. ..++.+.+.+.+.+++++..++.++
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L 251 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST---THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc---ccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 1112112 2467888888887664 45556677776665321 1111111 2455556666778899999999999
Q ss_pred HHHHHHcCh----hhHHHhHHHHhccccccchH
Q psy10471 249 EGLRVALGP----VRILQYVLQGLFHPARKVRD 277 (318)
Q Consensus 249 ~~i~~alG~----~~~~~~vl~~l~~~a~~~r~ 277 (318)
..++..-.. ....|.++..+.+....++.
T Consensus 252 ~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 284 (529)
T 1jdh_A 252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 284 (529)
T ss_dssp HHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHH
Confidence 988865432 34667777776655555555
No 59
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.81 E-value=8.5e-08 Score=96.42 Aligned_cols=244 Identities=13% Similarity=0.036 Sum_probs=168.1
Q ss_pred hhhhHHHHHHHHHHHhccCc-CCChHhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471 4 DKNLGIKIVQQIAILMGCAI-LPHLKNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~-~P~l~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
-|..++.+|+.|+.-..+.. .-.....++.++..|++. ++.+|+.|+.+|..++..........+ ...+..|+++|+
T Consensus 30 vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~ 108 (644)
T 2z6h_A 30 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLG 108 (644)
T ss_dssp HHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT-TTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH-cCCHHHHHHHHh
Confidence 46788889999987322110 001236778888888764 799999999999998863211000111 124556778889
Q ss_pred hchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------CcccchHHHH
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SPFTVLPALM 147 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p~~vip~L~ 147 (318)
+++..+|..|+++++.++..-.+. ..++.|++.|+.++.+.+..++.++..++... .....+|.|+
T Consensus 109 ~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv 188 (644)
T 2z6h_A 109 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188 (644)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHH
Confidence 988899999999999998754322 35788999998766667777777777665321 1236799999
Q ss_pred HHhcCCcc-hHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH
Q psy10471 148 NEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH 224 (318)
Q Consensus 148 ~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h 224 (318)
+.+++++. ..+..++.++..+.. ....+.++ ...+|.+..++.+.+..+|+.++.++..++..... .+....
T Consensus 189 ~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~ 263 (644)
T 2z6h_A 189 NIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEG 263 (644)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh---hhhhhh
Confidence 99988753 445666777666653 22334444 34789999999999999999999999999865422 122234
Q ss_pred HHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 225 LLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
.++.++..+.++++++|..+..++..++.
T Consensus 264 ~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 264 LLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 55555666677889999999888887755
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.79 E-value=1.1e-07 Score=97.93 Aligned_cols=222 Identities=14% Similarity=0.070 Sum_probs=157.0
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--- 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--- 105 (318)
..+|.+..+++.+++.+|+.|+++|+.+|.... ....--=...+..|+++|++..+..|+.|.++++.++....|.
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 468899999999999999999999999995321 1110000124455667778877889999999999998765553
Q ss_pred ------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhc-------CcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471 106 ------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETC-------SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 171 (318)
Q Consensus 106 ------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~-------~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~ 171 (318)
..++.|+..|..+.. ..+..+..|+..++... .-...+|.|.+.+.+++..+++.++.++..++.+
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 246778888874322 33445666666655321 1125789999999999999999999999998753
Q ss_pred Hccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHH
Q psy10471 172 IGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDA 247 (318)
Q Consensus 172 lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~ 247 (318)
-. ....+. ...+|.+..++...+..+|+.++++++.++.+... .....+. ..++.+...+.+.+.+++..++.+
T Consensus 654 ~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 654 ED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp HH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 21 222333 35889999999999999999999999999874210 0112221 244455555667899999999999
Q ss_pred HHHHHH
Q psy10471 248 VEGLRV 253 (318)
Q Consensus 248 i~~i~~ 253 (318)
+..+..
T Consensus 732 L~NL~~ 737 (810)
T 3now_A 732 ILNMIN 737 (810)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999876
No 61
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.78 E-value=2.5e-07 Score=86.73 Aligned_cols=248 Identities=10% Similarity=0.057 Sum_probs=162.3
Q ss_pred chhhhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhcC----------C-CCHHHHHHHHHHHHHHHhhCCCCCC-hhh
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGLV----------D-EQQKVQENCIDLVGRIADRGPEYVS-ARE 68 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l~----------d-~~~~vR~aa~~~LG~la~~~~~~i~-~~~ 68 (318)
+.++.++++|+.++. .+..+..+- ..++.++.+|. + .++.+|+.|+++|..+|....+.-. ...
T Consensus 47 ~~~~~A~~aL~nls~--d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456678888888876 223333332 24455555552 1 3478999999999999965432100 111
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhh-cccchhhHHHHHHHHHHHHhhcC-
Q psy10471 69 WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNL-KVQERQNRVCTTVAIAIVAETCS- 138 (318)
Q Consensus 69 ~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~L-k~~~~~~R~~~~~ai~~i~~~~~- 138 (318)
.-..+..|+++|++++..+|..|.++++.++..-++. ..++.|++.| +..+...+..++.++..++..+.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 2345667888889888899999999999998532332 2477888875 44444555666667766553221
Q ss_pred -------cccchHHHHHHhcCCcc----hHHHHHHHHHHHHHHHH--ccccccch--hhhHHHHHHHHhcCCHHHHHHHH
Q psy10471 139 -------PFTVLPALMNEYRVPEL----NVQNGVLKALSFLFEYI--GEMGKDYI--YAVTPLLEDALMDRDLVHRQTAC 203 (318)
Q Consensus 139 -------p~~vip~L~~~~~d~~~----~v~~~vl~al~~i~~~l--g~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~ 203 (318)
-...+|.|.+.++.++. +++..++.++.++...+ +...+..+ ...+|.+.+++++.+..+++.++
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 13689999999987654 47877888888777531 22222223 34789999999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 204 ATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 204 ~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
.++..++..-. .....+.. .++.+...+...++.++..+..++..++..
T Consensus 285 ~aL~nLa~~~~--~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 285 GTLWNLSARNP--KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHTSSCH--HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCH--HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99988864211 11112211 345555666667888999999999988765
No 62
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.77 E-value=5e-08 Score=103.56 Aligned_cols=187 Identities=11% Similarity=0.074 Sum_probs=125.5
Q ss_pred chhhhHHHHHHHHHHHhccC-cCCChHhHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q psy10471 3 SDKNLGIKIVQQIAILMGCA-ILPHLKNLVEIIEHGLV-----DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFEL 76 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l~-----d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~L 76 (318)
++|++++.++|.+|...+.. -.++++++++.+..... |++|.||..+++++|+++++... .++.+.+++..+
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~l 545 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKL 545 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 46889999999887533332 23557888888766442 45678887899999999986443 256777888888
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHhhhCHH--------------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc---
Q psy10471 77 LELLKAHKKAIRRATVNTFGYIAKAIGPH--------------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--- 139 (318)
Q Consensus 77 l~~L~d~~~~vR~~av~~lg~la~~igp~--------------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--- 139 (318)
++.+.++++.||..|..+|..+++.++.. .++..+...+..-+.+.+..+.++++.+....++
T Consensus 546 l~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~ 625 (1049)
T 3m1i_C 546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1049)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 88898888999999999999999887632 2333333333322334456778898877654432
Q ss_pred ---c--cchHHHHHHhcC--------C----cch-HH--HHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471 140 ---F--TVLPALMNEYRV--------P----ELN-VQ--NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL 191 (318)
Q Consensus 140 ---~--~vip~L~~~~~d--------~----~~~-v~--~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l 191 (318)
+ .+++.+.+.+.. + +.+ +. ..+++++..+++++|..+.+|+..+.+.+.+++
T Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~ 697 (1049)
T 3m1i_C 626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY 697 (1049)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2 455555443321 1 111 11 456788889999999888888876666555544
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.77 E-value=7.6e-07 Score=89.50 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=158.5
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhc--CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGL--VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l--~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
|..|+++++.+.. .-..+.++|.+...+ .|.+|.||+.|+.++..+....++.+....|.+.+. ++|.|
T Consensus 128 r~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~---~lL~d 198 (621)
T 2vgl_A 128 MGLALHCIANVGS------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVV---HLLND 198 (621)
T ss_dssp HHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHH---HHTTC
T ss_pred HHHHHHHhhccCC------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHH---HHhCC
Confidence 5577777777744 225567888888888 999999999999999999998776653347888877 55588
Q ss_pred chHHHHHHHHHHHHHHHhhhCHH---HHHHHHH--------------------------------Hhh---c-ccchhhH
Q psy10471 83 HKKAIRRATVNTFGYIAKAIGPH---DVLATLL--------------------------------NNL---K-VQERQNR 123 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~igp~---~~l~~Ll--------------------------------~~L---k-~~~~~~R 123 (318)
+++.|+.+|+..++.++.. .|. .+++.++ +.| . .++...+
T Consensus 199 ~d~~V~~~a~~~l~~i~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~ 277 (621)
T 2vgl_A 199 QHLGVVTAATSLITTLAQK-NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR 277 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHH-CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred CCccHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence 8889999999999888753 221 0111111 111 0 0111111
Q ss_pred H-----------------------------H-HHHHHHHH-HhhcCc---ccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471 124 V-----------------------------C-TTVAIAIV-AETCSP---FTVLPALMNEYRVPELNVQNGVLKALSFLF 169 (318)
Q Consensus 124 ~-----------------------------~-~~~ai~~i-~~~~~p---~~vip~L~~~~~d~~~~v~~~vl~al~~i~ 169 (318)
. + +..++..+ .....| ..++..|..-+..++++++-.++.++..+.
T Consensus 278 ~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~ 357 (621)
T 2vgl_A 278 GRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA 357 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 0 0 01111111 111111 135556666667788899988999888887
Q ss_pred HHHccccccchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471 170 EYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 248 (318)
Q Consensus 170 ~~lg~~~~~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i 248 (318)
..-+. .+++....+.+..+++ +.|..+|..+.+++..++..- ..+..+..++.|+ .+.+.+++..++.+|
T Consensus 358 ~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~---Nv~~Iv~eL~~yl----~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 358 SSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS---NAQQIVAEMLSYL----ETADYSIREEIVLKV 428 (621)
T ss_dssp TCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHH----HHCCHHHHHHHHHHH
T ss_pred hccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh---hHHHHHHHHHHHH----HhcCHHHHHHHHHHH
Confidence 54321 1344555677788888 999999999999987775332 2345555666664 336789999999999
Q ss_pred HHHHHHcChh--hHHHhHHHHhc
Q psy10471 249 EGLRVALGPV--RILQYVLQGLF 269 (318)
Q Consensus 249 ~~i~~alG~~--~~~~~vl~~l~ 269 (318)
+.++.-..++ .+...++..+-
T Consensus 429 ~~la~k~~~~~~~~v~~Ll~ll~ 451 (621)
T 2vgl_A 429 AILAEKYAVDYTWYVDTILNLIR 451 (621)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHH
Confidence 9998877543 36666666653
No 64
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.76 E-value=1.4e-07 Score=99.59 Aligned_cols=250 Identities=10% Similarity=-0.025 Sum_probs=165.9
Q ss_pred chhhhHHHHHHHHHHHhcc------CcCCChHhHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH
Q psy10471 3 SDKNLGIKIVQQIAILMGC------AILPHLKNLVEIIEHGLV-----DEQQKVQENCIDLVGRIADRGPEYVSAREWMR 71 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~------~~~P~l~~l~~~l~~~l~-----d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~ 71 (318)
+++++++-+++.+|+.... ...++++.+++.+..+++ +.||.||.++++++|+++++.... ++.+.+
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l~~ 535 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAIPA 535 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence 4688999999999995432 234778888888887765 889999999999999999987642 456677
Q ss_pred HHHHHHH--HhhhchHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhccc-------c--------------hhh
Q psy10471 72 ICFELLE--LLKAHKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQ-------E--------------RQN 122 (318)
Q Consensus 72 il~~Ll~--~L~d~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~-------~--------------~~~ 122 (318)
++..+++ -+.+++++||.+|..+|..+.+.+.+ + .++..+-..|... + -..
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNS 615 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHH
T ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchH
Confidence 7777776 66677788999999999998887664 3 3444444444311 0 013
Q ss_pred HHHHHHHHHHHHhhcC-c--------ccchHHHHHHhcC----C-c--ch-HH-HHHHHHHHHHHHHHccc------ccc
Q psy10471 123 RVCTTVAIAIVAETCS-P--------FTVLPALMNEYRV----P-E--LN-VQ-NGVLKALSFLFEYIGEM------GKD 178 (318)
Q Consensus 123 R~~~~~ai~~i~~~~~-p--------~~vip~L~~~~~d----~-~--~~-v~-~~vl~al~~i~~~lg~~------~~~ 178 (318)
+.-..+|+|.+....+ | -.+++++++.+.. . . .+ .+ ..++.+++.+.+++... +..
T Consensus 616 ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~ 695 (980)
T 3ibv_A 616 QLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLA 695 (980)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHH
Confidence 5667888987664433 2 1567776665531 1 1 11 12 34677778888765332 233
Q ss_pred chhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471 179 YIYAVTPLLEDALM--DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256 (318)
Q Consensus 179 yl~~iiP~l~~~l~--~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG 256 (318)
.+.++++.+..++. ..+..+|..+...+.++...++ .+....+..+...++.. -+.+-....+..++.+..-.|
T Consensus 696 ~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg-~~~~p~lp~~i~~ll~~---~~~~e~~~fL~l~~qli~~f~ 771 (980)
T 3ibv_A 696 SFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG-PDMLPKVPQLISILLNS---IDMNELVDVLSFISQLIHIYK 771 (980)
T ss_dssp HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH-HHHTTTHHHHHHHHHHH---CCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH
Confidence 44567777777776 5678999999999999988774 11122333333333321 123335568899999999999
Q ss_pred hh
Q psy10471 257 PV 258 (318)
Q Consensus 257 ~~ 258 (318)
.+
T Consensus 772 ~~ 773 (980)
T 3ibv_A 772 DN 773 (980)
T ss_dssp TT
T ss_pred HH
Confidence 86
No 65
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.73 E-value=7.2e-07 Score=80.14 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=142.6
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHHHhh
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR---GPEYVSAREWMRICFELLELLK 81 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~---~~~~i~~~~~~~il~~Ll~~L~ 81 (318)
+..|+..|.+............++-+++.+.-.+-|.|+.|-..++..|..+.+. .++.+...|-..++..|++-+-
T Consensus 63 ~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG 142 (266)
T 2of3_A 63 HLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG 142 (266)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhC
Confidence 3356666655444322234444555566555455688999999999999988643 2344444555667777889898
Q ss_pred hchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC--cccch---HHHHHHhcCCcch
Q psy10471 82 AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--PFTVL---PALMNEYRVPELN 156 (318)
Q Consensus 82 d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~--p~~vi---p~L~~~~~d~~~~ 156 (318)
|++..+|..+-..+-.+.+..+|..+.+.+++.++...-+.|......++.+-+.+| |...+ |.+.+.+.|++.+
T Consensus 143 d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~ 222 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVN 222 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHH
T ss_pred CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHH
Confidence 999999999888888888888899999999999987776888888888876555555 45788 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh
Q psy10471 157 VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM 192 (318)
Q Consensus 157 v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~ 192 (318)
||+++++++..+++..|+.+..|+..+-|.-...+.
T Consensus 223 VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~ 258 (266)
T 2of3_A 223 VRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVE 258 (266)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999888888766666555553
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.71 E-value=1.2e-06 Score=88.06 Aligned_cols=269 Identities=10% Similarity=0.065 Sum_probs=175.3
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHhhhCH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-d~~~~vR~~av~~lg~la~~igp 104 (318)
.+...+..+...+.+.++.+|..|+.+|..++...+. ...+.+....++..|+ |++.+||+.+++.+..++..-.-
T Consensus 326 ~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv 402 (621)
T 2vgl_A 326 LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNA 402 (621)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhH
Confidence 3556677778888888999999999999999986542 1122222233456678 88889999999999888764333
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471 105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA 182 (318)
Q Consensus 105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ 182 (318)
..++..|+..++..+...|..++.+|+.+++++.+. ..+..+++.+++....+...++..+..+... .+....|
T Consensus 403 ~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~~~~~~--- 478 (621)
T 2vgl_A 403 QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RDDVQGY--- 478 (621)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GCSCHHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC-ChhHHHH---
Confidence 457777888887767788999999999999888763 6788888888776555555565555555432 1223333
Q ss_pred hHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhH
Q psy10471 183 VTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 260 (318)
Q Consensus 183 iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~ 260 (318)
.+..+.+.+.++. ..+-+.+++.+|.-+..+....... -..++.++.+...++++.+|..++.++-.+....+. .
T Consensus 479 ~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~-p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~ 555 (621)
T 2vgl_A 479 AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSS-PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--V 555 (621)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--G
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--H
Confidence 3455666676554 4566677799988877664322110 112233444555678999999999999999776532 2
Q ss_pred HHhHHHHh----c--cccccchH---HHHHHHHHhhccccccccccCCCCCcc
Q psy10471 261 LQYVLQGL----F--HPARKVRD---VYWKIYNSLYIGGQDALISAYPRIQND 304 (318)
Q Consensus 261 ~~~vl~~l----~--~~a~~~r~---~~w~i~~~~~~~~~~~~~p~~p~~~~~ 304 (318)
.+.+...+ . +++-.+|+ .||++++.-.....+.+..-.|.+++.
T Consensus 556 ~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~ 608 (621)
T 2vgl_A 556 KATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER 608 (621)
T ss_dssp HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCc
Confidence 33343333 2 34445666 888888543222233444446666544
No 67
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.67 E-value=3.4e-07 Score=96.89 Aligned_cols=215 Identities=11% Similarity=0.064 Sum_probs=138.6
Q ss_pred HHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-----h
Q psy10471 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-----A 82 (318)
Q Consensus 10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-----d 82 (318)
.+|+-++.+.|.++ ++.+++.+...+.+ .++..|+|++.++|.++++..+....+.+..++..|++++. |
T Consensus 435 d~L~~l~~l~~~~~---~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 435 EVLVYLTHLNVIDT---EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHHHCHHHH---HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHhccCHHHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 45666666555332 22233444433443 57999999999999999855432112334445555666665 4
Q ss_pred chHHHHHHHHHHHHHHHhhhC--HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHH
Q psy10471 83 HKKAIRRATVNTFGYIAKAIG--PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNG 160 (318)
Q Consensus 83 ~~~~vR~~av~~lg~la~~ig--p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~ 160 (318)
++..+|..+++++|+.++-+. |. .++ .++..++.-+.++.+.++.+
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~~~~-~L~-------------------------------~vl~~L~~~l~~~~~~v~~~ 559 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKAHWN-FLR-------------------------------TVILKLFEFMHETHEGVQDM 559 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHCHH-HHH-------------------------------HHHHHHHHHTTCSCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHH-HHH-------------------------------HHHHHHHHHhhcCCHHHHHH
Confidence 556688889999999887442 21 111 23444667777777889999
Q ss_pred HHHHHHHHHHHHcccc--------ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHHhhhh
Q psy10471 161 VLKALSFLFEYIGEMG--------KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG-CEDALTHLLNYVWP 231 (318)
Q Consensus 161 vl~al~~i~~~lg~~~--------~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~~l~~ 231 (318)
++.++.++++..+..+ .+|+++++..+..+..+-+..-+..+.++++.++..+.... ....+.++++.+..
T Consensus 560 A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~ 639 (1023)
T 4hat_C 560 ACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM 639 (1023)
T ss_dssp HHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH
Confidence 9999999998777655 46999999999998877777777888888888877764221 23344444433322
Q ss_pred c---ccC-----C----C---hHHHHHHHHHHHHHHHHcChhh
Q psy10471 232 N---IFE-----T----S---PHLVQAFMDAVEGLRVALGPVR 259 (318)
Q Consensus 232 ~---i~d-----~----~---~~vr~~ii~~i~~i~~alG~~~ 259 (318)
. +.+ + + ..-...++.+..+++.++|..+
T Consensus 640 ~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f 682 (1023)
T 4hat_C 640 AWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF 682 (1023)
T ss_dssp HHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence 2 111 0 1 1233467788888999999865
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.66 E-value=3.6e-06 Score=87.37 Aligned_cols=259 Identities=13% Similarity=0.107 Sum_probs=159.6
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCC--------HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQ--------QKVQENCIDLVGRIADRGPEYVSAREWMRICFEL 76 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~--------~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~L 76 (318)
|+-|+-.+|-+.. |.. ++.+..+.+.+.+.+ +.+|..|+..||.+.-+++.. + ++..|
T Consensus 412 k~GAllaLGli~a--g~~-----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----e---v~e~L 477 (963)
T 4ady_A 412 KGGSLYGLGLIYA--GFG-----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI----E---VYEAL 477 (963)
T ss_dssp HHHHHHHHHHHTT--TTT-----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----H---HHHHH
T ss_pred HHHHHHHHHHhcC--CCc-----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH----H---HHHHH
Confidence 5666666666655 322 246677777776654 889999999999987665531 2 33445
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc-CCc
Q psy10471 77 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPE 154 (318)
Q Consensus 77 l~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~-d~~ 154 (318)
.+++.+++..+|..|.-++|-+--..|..+++..|+..+. +++...|+..+.++|.++ ++.-...+.+++.+. +.+
T Consensus 478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~~L~~~~d 555 (963)
T 4ady_A 478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQELADDLITKMLASDE 555 (963)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHHHHHHCSC
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChHHHHHHHHHHHhCCC
Confidence 5666776566788888899977544566677788877765 334467888888887653 222356677777764 566
Q ss_pred chHHHHHHHHHHHHHHHHccccccchhhhHH-HHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTP-LLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI 233 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP-~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i 233 (318)
+.+|.+.+-+++..+-+.|. +..+. .+..+..+.+..+|+.|...++.++.+ .++.+..++..+..
T Consensus 556 p~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g-----~~e~v~rlv~~L~~-- 622 (963)
T 4ady_A 556 SLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR-----DYTTVPRIVQLLSK-- 622 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-----SCSSHHHHTTTGGG--
T ss_pred HHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccC-----CHHHHHHHHHHHHh--
Confidence 77777666665544444443 22223 444445677788888877777655322 22333444333333
Q ss_pred cCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHHhhcccccc
Q psy10471 234 FETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDA 293 (318)
Q Consensus 234 ~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~~~~~~~~~ 293 (318)
+.++++|..+.-+++.++..-|.......+.+..-+....||..-.-.+..+..+..++
T Consensus 623 -~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 623 -SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp -CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred -cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 36788888888888887755555455553333333333456665555666666665555
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.63 E-value=4e-09 Score=84.41 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=88.9
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
-..+-++-.+.+...|+|+++.+|..|+++||++.+. . +..|++.|+|+++.+|..|++++|.++.
T Consensus 6 ~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 6 HHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp ---------------CCSSCCCSSSSCCSSTTSCSST--------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--
T ss_pred ccccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--
Confidence 3444556677788889999999999999999876431 1 2345677899889999999999998653
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHH
Q psy10471 103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSF 167 (318)
Q Consensus 103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~ 167 (318)
...++.|...|++++..+|..++.+++.++. -..+|.|...++|++..++..+..++..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4568888888888888899999999987753 2578899999999999999888887653
No 70
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.62 E-value=1.1e-06 Score=85.23 Aligned_cols=245 Identities=11% Similarity=0.060 Sum_probs=158.6
Q ss_pred hhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhcC----------C-CCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHH
Q psy10471 6 NLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGLV----------D-EQQKVQENCIDLVGRIADRGPEYVS-AREWMR 71 (318)
Q Consensus 6 ~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l~----------d-~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~ 71 (318)
+.++.+|+.++. ++..+..+- ..++.++.++. + .++.+++.|+++|..+|....+.-. ....-.
T Consensus 166 ~qAv~aL~nls~--~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 166 CPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp HHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 378888887754 222222221 24444554442 2 3478999999999999975432100 111234
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhh-cccchhhHHHHHHHHHHHHhhcC----
Q psy10471 72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNL-KVQERQNRVCTTVAIAIVAETCS---- 138 (318)
Q Consensus 72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~L-k~~~~~~R~~~~~ai~~i~~~~~---- 138 (318)
.+..|+++|++++..+|..|+++++.++..-++. ..++.|++.| +..+...+..++.++..++..+.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4667788889888899999999999998532332 2477888875 44444566666677765553221
Q ss_pred ----cccchHHHHHHhcCCcc----hHHHHHHHHHHHHHHHH--ccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHH
Q psy10471 139 ----PFTVLPALMNEYRVPEL----NVQNGVLKALSFLFEYI--GEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATI 206 (318)
Q Consensus 139 ----p~~vip~L~~~~~d~~~----~v~~~vl~al~~i~~~l--g~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i 206 (318)
-...+|.|.+.++.+.. +++..++.++..+...+ +.....-+ ...+|.+..++++.+..+++.++.++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 13689999999987654 37887888888877531 22222222 34789999999999999999999999
Q ss_pred HHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 207 KHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 207 ~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
..++..-. .....+.. ..+.+...+...++.++..+..++..++..
T Consensus 404 ~nLa~~~~--~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 404 WNLSARNP--KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHSSCH--HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCH--HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 98874311 11112211 345555656667888999999998888653
No 71
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.62 E-value=7.4e-07 Score=81.50 Aligned_cols=197 Identities=11% Similarity=0.082 Sum_probs=134.6
Q ss_pred CChHhHHHHHHhhcCCCCH------------HHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHH-HhhhchHHHHH
Q psy10471 25 PHLKNLVEIIEHGLVDEQQ------------KVQENCIDLVGRIADRGPEYVSAREW--MRICFELLE-LLKAHKKAIRR 89 (318)
Q Consensus 25 P~l~~l~~~l~~~l~d~~~------------~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~-~L~d~~~~vR~ 89 (318)
|--.+.|+..+..|+|+.| .-|..|+..|.++++.... ...+ ...+..|++ .|+++++.+|.
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dn---a~~~~~~G~l~~Lv~~lL~s~~~~vr~ 100 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN---AADFCQLSGMHLLVGRYLEAGAAGLRW 100 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHH---HHHHHHTTHHHHHHHTTTTCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhh---HHHHHHcCCHHHHHHHHHcCCCHHHHH
Confidence 6667889999999988632 3477778888888763221 1111 123344667 78888899999
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc-CCcchHHHHHHHHHHHH
Q psy10471 90 ATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPELNVQNGVLKALSFL 168 (318)
Q Consensus 90 ~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~-d~~~~v~~~vl~al~~i 168 (318)
.|++++|.++. -+|. . |..+. ...++|.|++.++ +++.++++.++.+++.+
T Consensus 101 ~Aa~~Lg~ia~-~n~~-~---------------~~~vv-----------~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl 152 (296)
T 1xqr_A 101 RAAQLIGTCSQ-NVAA-I---------------QEQVL-----------GLGALRKLLRLLDRDACDTVRVKALFAISCL 152 (296)
T ss_dssp HHHHHHHHHHT-TCHH-H---------------HHHHH-----------HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHH-H---------------HHHHH-----------HCCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 99999999985 2332 0 00110 0146778888887 45788999999999998
Q ss_pred HHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHH
Q psy10471 169 FEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFM 245 (318)
Q Consensus 169 ~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii 245 (318)
+..-......+. ...+|.+..++.+.+..+|+.++.+++.++..-. .....+.. ..+.+...+..++++++..++
T Consensus 153 ~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~--~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al 230 (296)
T 1xqr_A 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP--EHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 230 (296)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHH
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh--HHHHHHHHcCCHHHHHHHHcCCChhHHHHHH
Confidence 864222222344 3588999999999999999999999999987521 11111111 334445555667889999999
Q ss_pred HHHHHHHHH
Q psy10471 246 DAVEGLRVA 254 (318)
Q Consensus 246 ~~i~~i~~a 254 (318)
.+++.++..
T Consensus 231 ~aL~~l~~~ 239 (296)
T 1xqr_A 231 GALCSLVTD 239 (296)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999999876
No 72
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.8e-06 Score=75.55 Aligned_cols=177 Identities=7% Similarity=0.029 Sum_probs=130.6
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC------C-hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYV------S-AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH- 105 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i------~-~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~- 105 (318)
+...|.+.+|+.|..|+..+..+.+...... . ...+.+.+. ..++|.+..+...++.++..+++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lk---k~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFA---QYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHH---HHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 4578899999999999999998887544211 1 223344444 6668999999999999999998877642
Q ss_pred -----------HHHHHHHHh-hcccchhhHHHHHHHHHHHHhhcCc-ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy10471 106 -----------DVLATLLNN-LKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVPELNVQNGVLKALSFLFEYI 172 (318)
Q Consensus 106 -----------~~l~~Ll~~-Lk~~~~~~R~~~~~ai~~i~~~~~p-~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l 172 (318)
.+++.|+.- |.+...+.|.....++..+.+.+++ ..++..+...+..-++.++...+..+..+++..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 234444432 4444446777777777666676665 467777777778888899999999999999988
Q ss_pred cccc---ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 173 GEMG---KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 173 g~~~---~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
|... ++.++.+++.+..++.++|+.+|..+..++..+-..+
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 8753 3466778888999999999999999999998886665
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.54 E-value=1.9e-05 Score=69.06 Aligned_cols=182 Identities=11% Similarity=0.095 Sum_probs=145.7
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC--HH
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG--PH 105 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig--p~ 105 (318)
++.+..+.++|.|.++.++..|+.+|+.+-...+...+...+..++..+++.+++++.+|---|+++++.+-+... |.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3467778899999999999999999999999876655567788888888899999888888889999999988755 33
Q ss_pred ---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh
Q psy10471 106 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY 181 (318)
Q Consensus 106 ---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~ 181 (318)
.+..+|.+..+.+..-.+-.++..++.+ ....+. .|+..+.+.+...++.++.+.+.++..+...-++ +..+.
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--~~i~~ 188 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--SGHLT 188 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS--CCCGG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC--HHHHH
Confidence 5788888888855555677778877776 222233 6777788888888899999999999988765554 44566
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 182 AVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
.|.--+..++++.|+.++..+..++..+...
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7777788899999999999999999888655
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.52 E-value=2.9e-06 Score=88.04 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=139.0
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIGPHD 106 (318)
Q Consensus 28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~la~~igp~~ 106 (318)
+++...+.+.+.|+++.+|+.|+.+||.+--+++.. . ++..|+..+ .+.+..+||.+.-++|-+. +|..+
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~---~----ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e 541 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP---E----AIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQE 541 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH---H----HHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH---H----HHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChH
Confidence 478888888888888888999999999987666642 1 233333433 3456679999999999875 66566
Q ss_pred HHHHHHHhhcc-cchhhHHHHHHHHHHHHhhcCcccchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471 107 VLATLLNNLKV-QERQNRVCTTVAIAIVAETCSPFTVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 184 (318)
Q Consensus 107 ~l~~Ll~~Lk~-~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii 184 (318)
..+.+++.|+. ++...|+..+.+++.-.-.-+-..++..|+..+ .|++..+|++++-+++.|.- |. ++.+
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--g~------~e~v 613 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--RD------YTTV 613 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--SS------CSSH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--CC------HHHH
Confidence 67777777774 344678887777654322222236677677765 57788899988888887643 32 1334
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 185 PLLED-ALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 185 P~l~~-~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
|.+.. +..+.++.+|..++.+++.+..+ .+..+.+. .|..+ ..|.++.||+.++.+++-+..
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aG---n~~~~aid-~L~~L---~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAG---KGLQSAID-VLDPL---TKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSS---SCCHHHHH-HHHHH---HTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccC---CCcHHHHH-HHHHH---ccCCCHHHHHHHHHHHHHHhc
Confidence 44444 44578899999999999877533 24445554 33333 467899999999988887754
No 75
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.49 E-value=2.8e-06 Score=82.00 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=117.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--- 105 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--- 105 (318)
+|.++..|+.+++.+|..|+++|+.++....+.- ..+ ...+..|+++|+++++.+++.|.+++..++..-.+.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~--~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAK--QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHH--HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5667778888899999999999999996443211 011 123455678889888899999999999999632222
Q ss_pred ----HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcc------cchHHHHHHh--------cCC--------cchHH
Q psy10471 106 ----DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPF------TVLPALMNEY--------RVP--------ELNVQ 158 (318)
Q Consensus 106 ----~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~------~vip~L~~~~--------~d~--------~~~v~ 158 (318)
-.++.|++.|+ ..+...+..++-++..++.. ... ..+|.|++.+ +++ +.++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 23778999998 65667777788888777643 111 5889999988 332 23455
Q ss_pred HHHHHHHHHHHHHHccccccchh---hhHHHHHHHHhc------CCHHHHHHHHHHHHHHh
Q psy10471 159 NGVLKALSFLFEYIGEMGKDYIY---AVTPLLEDALMD------RDLVHRQTACATIKHMA 210 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~~~~yl~---~iiP~l~~~l~~------~~~~~R~~a~~~i~~la 210 (318)
+.++.++.+++.. ....+.+- ..+|.+..++.+ .+...++.+...+..++
T Consensus 161 ~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 161 FNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 6888888888764 33334442 578888888864 34445555555555543
No 76
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.47 E-value=3.7e-06 Score=89.14 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcC--CCCHHHHHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHHHh---
Q psy10471 7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLV--DEQQKVQENCIDLVGRIADRGPEYVSARE-WMRICFELLELL--- 80 (318)
Q Consensus 7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~--d~~~~vR~aa~~~LG~la~~~~~~i~~~~-~~~il~~Ll~~L--- 80 (318)
.+-.++..++.+.|..+.+++- +.+...++ +.+++.|++++.++|.+++...... .+. ...++..++.+.
T Consensus 432 ~~~~~L~~l~~~~~~~~l~~v~---~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~-e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVIDTEEIMI---SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHH---HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHccCHHHHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchh-hHHHHHHHHHHHHHHHhhh
Confidence 4566888888776654444433 33333343 3579999999999999987544321 123 344444444432
Q ss_pred --hhchHHHHHHHHHHHHHHHhhhCHH-HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchH
Q psy10471 81 --KAHKKAIRRATVNTFGYIAKAIGPH-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV 157 (318)
Q Consensus 81 --~d~~~~vR~~av~~lg~la~~igp~-~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v 157 (318)
+++++.+|..+++++|+.++-+..+ +.+. .+++.++..+.++++.+
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-------------------------------~vl~~ll~~l~~~~~~V 556 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-------------------------------TVILKLFEFMHETHEGV 556 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-------------------------------HHHHHHHHHTTSSCHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-------------------------------HHHHHHHHHhcCCCHHH
Confidence 2345556667999999988644321 1111 34555777778888899
Q ss_pred HHHHHHHHHHHHHHHccccc--------cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHh
Q psy10471 158 QNGVLKALSFLFEYIGEMGK--------DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNY 228 (318)
Q Consensus 158 ~~~vl~al~~i~~~lg~~~~--------~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~ 228 (318)
+..++.++..+++..+..+. +|++.++..+..++..-+..-...+.++++.++...... .....+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999988776654 999999999999888766666677777887777665310 112223332222
Q ss_pred hh---hcccC---------CChH-HH--HHHHHHHHHHHHHcChhh
Q psy10471 229 VW---PNIFE---------TSPH-LV--QAFMDAVEGLRVALGPVR 259 (318)
Q Consensus 229 l~---~~i~d---------~~~~-vr--~~ii~~i~~i~~alG~~~ 259 (318)
+. ..+.+ .+++ ++ ..++.++.+++.++|.++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f 682 (1049)
T 3m1i_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF 682 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 21 11110 0222 12 356778889999999765
No 77
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.45 E-value=1.6e-05 Score=83.15 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=145.6
Q ss_pred hhHHHHHHHHHHHhcc--CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471 6 NLGIKIVQQIAILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH 83 (318)
Q Consensus 6 ~~~l~~i~~La~~~g~--~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~ 83 (318)
+.|+.+++.|+...|. .+.||+-+++|.++..+.|....||.+|-.++-.++....++. .+. ++..|++.|++.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-~~~---~~~~~~~~~~~~ 145 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-IKA---LLPHLTNAIVET 145 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-HHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-HHH---HHHHHHHHhccc
Confidence 6788899999976654 6889999999999999999999999999999999999877654 333 444566777775
Q ss_pred hHH-HHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHH---------------------
Q psy10471 84 KKA-IRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVA--------------------- 134 (318)
Q Consensus 84 ~~~-vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~--------------------- 134 (318)
.+| .+..|++.++.+++.. |. ++++.+-....|-...+......++..++
T Consensus 146 ~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~ 224 (986)
T 2iw3_A 146 NKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224 (986)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC
Confidence 455 8899999999999754 64 23333333332222212111111111111
Q ss_pred -------------hhcC-----cc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--ccccchhhhHHHHHHHHh
Q psy10471 135 -------------ETCS-----PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAVTPLLEDALM 192 (318)
Q Consensus 135 -------------~~~~-----p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--~~~~yl~~iiP~l~~~l~ 192 (318)
-+++ |+ .++|-|.+-+++.+..+++..+--+.+++|...+ ...+|+|.++|.++++..
T Consensus 225 p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~ 304 (986)
T 2iw3_A 225 PTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA 304 (986)
T ss_dssp TTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTT
T ss_pred hhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhh
Confidence 0111 22 5778888888888888887777788899988766 578999999999999885
Q ss_pred -cCCHHHHHHHHHHHHHHhhhh
Q psy10471 193 -DRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 193 -~~~~~~R~~a~~~i~~la~~~ 213 (318)
..+|..|.-+..++..|-...
T Consensus 305 ~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 305 TIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhh
Confidence 567999998888888885554
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.44 E-value=3e-06 Score=79.40 Aligned_cols=205 Identities=11% Similarity=0.125 Sum_probs=139.6
Q ss_pred hhhHHHHHHHHHHHhccC-cCCCh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCA-ILPHL---KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLE 78 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~-~~P~l---~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~ 78 (318)
|..+..+|..|+. +.. .+.-+ ...+|.++.+|+++++.+|+.|+++|+.++....+.. ...+. ..+..|++
T Consensus 101 q~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 101 RRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS-KKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHTS--SCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHH-HHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHH-HHHHHHCCCHHHHHH
Confidence 3455566666664 322 22223 3568999999999999999999999999987522110 11111 23445666
Q ss_pred Hh-hhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch----hhHHHHHHHHHHHHhh--cCc----
Q psy10471 79 LL-KAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER----QNRVCTTVAIAIVAET--CSP---- 139 (318)
Q Consensus 79 ~L-~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~~--~~p---- 139 (318)
+| ++.+..+++.|+.+++.++...+.. ..++.|++.|+..+. ..+..++-++..++.. ..+
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 54 4466788999999998888622221 247778888875432 2455555555555431 111
Q ss_pred ----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 140 ----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 140 ----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
...+|.|++.+++++.+++..++.++..+... ......++ ...+|.|.++++..+..+|+.++.++..++..-
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999999999988631 12334444 357899999999999999999999999998764
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.36 E-value=7.3e-06 Score=79.35 Aligned_cols=204 Identities=11% Similarity=0.129 Sum_probs=139.8
Q ss_pred hhhHHHHHHHHHHHhccC-cCCCh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGCA-ILPHL---KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLE 78 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~-~~P~l---~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~ 78 (318)
+..+..+|..|+. |.. -+..+ ...+|.++.+|++.++.+++.|+++|+.++....+.. ...+. ..+..|++
T Consensus 217 ~~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 217 RRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS-KKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHH-HHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHH-HHHHHHcCCHHHHHH
Confidence 4456677777775 332 22222 4568999999999999999999999999986422110 11111 23455667
Q ss_pred Hh-hhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch----hhHHHHHHHHHHHHhh--cCc----
Q psy10471 79 LL-KAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER----QNRVCTTVAIAIVAET--CSP---- 139 (318)
Q Consensus 79 ~L-~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~~--~~p---- 139 (318)
+| ++.+..+++.|+.+++.++...+.. ..++.|++.|+..+. ..+..++-++..++.. ..+
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 373 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 54 4466788999999998888622211 247778888874432 2444455555554431 121
Q ss_pred ----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 140 ----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 140 ----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
...+|.|+..+++++.+++..++.++..+... ......++ ...+|.+.+++...+..+|+.++.++..++..
T Consensus 374 ~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 374 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 25799999999999999999999999988732 23344555 35789999999999999999999999988765
No 80
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.36 E-value=5.3e-05 Score=73.00 Aligned_cols=270 Identities=9% Similarity=0.036 Sum_probs=155.7
Q ss_pred hhhHHHHHHHHHHHhc-cCcCCCh--HhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471 5 KNLGIKIVQQIAILMG-CAILPHL--KNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80 (318)
Q Consensus 5 r~~~l~~i~~La~~~g-~~~~P~l--~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L 80 (318)
+..+..++..|+. + ...+..+ ...+|.++.+|+ +.++.+++.|+++|+.+|.. .+ ....-....+..|+++|
T Consensus 61 ~~~A~~aL~nLa~--~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 61 QQAAAGALRNLVF--RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHHHHHHHS--SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHH
Confidence 3456667776665 2 1122222 134778888898 77899999999999999986 32 21111115566677777
Q ss_pred h--------hc--------hHHHHHHHHHHHHHHHhhhCHH---------HHHHHHHHhhccc-------chhhHHHH--
Q psy10471 81 K--------AH--------KKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQ-------ERQNRVCT-- 126 (318)
Q Consensus 81 ~--------d~--------~~~vR~~av~~lg~la~~igp~---------~~l~~Ll~~Lk~~-------~~~~R~~~-- 126 (318)
. ++ ...+++.|++++..++.. |. ..++.|+..|+.. ++....++
T Consensus 137 ~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 214 (457)
T 1xm9_A 137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214 (457)
T ss_dssp THHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred hccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence 3 22 245667999999998864 42 3566677766631 11110110
Q ss_pred HHHH--------------------------------HHHHh--------------hcCc--------ccchHHHHHHhcC
Q psy10471 127 TVAI--------------------------------AIVAE--------------TCSP--------FTVLPALMNEYRV 152 (318)
Q Consensus 127 ~~ai--------------------------------~~i~~--------------~~~p--------~~vip~L~~~~~d 152 (318)
...+ +.+.. ...| ..++|.|...++.
T Consensus 215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~ 294 (457)
T 1xm9_A 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294 (457)
T ss_dssp HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence 1111 00000 0001 2457778888865
Q ss_pred C-cchHHHHHHHHHHHHHHHHccc---c-ccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHH
Q psy10471 153 P-ELNVQNGVLKALSFLFEYIGEM---G-KDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL 225 (318)
Q Consensus 153 ~-~~~v~~~vl~al~~i~~~lg~~---~-~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hl 225 (318)
+ ++.++..++.++..++..-+.. . ...+ ...+|.+.+++.+.+..+|..++.+++.++..-+ ..+-.-.+.
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--~~~~i~~~~ 372 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--LHRVMGNQV 372 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--GHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--HHHHHHHhh
Confidence 4 4788899999999887532211 0 1112 3578999999999999999999999999977432 111111233
Q ss_pred HHhhhhcccCCC------hHHHHHHHHHHHHHHHH-------cChhhHHHhHHHHhccc-cccchH-HHHHH
Q psy10471 226 LNYVWPNIFETS------PHLVQAFMDAVEGLRVA-------LGPVRILQYVLQGLFHP-ARKVRD-VYWKI 282 (318)
Q Consensus 226 l~~l~~~i~d~~------~~vr~~ii~~i~~i~~a-------lG~~~~~~~vl~~l~~~-a~~~r~-~~w~i 282 (318)
++.+...+...+ +++...++.+++.+... +...--.+.+...+-|. +.+++. +.|-+
T Consensus 373 i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L 444 (457)
T 1xm9_A 373 FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444 (457)
T ss_dssp HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 333344444432 35667777777766432 22223566666666777 554333 44433
No 81
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.34 E-value=4.7e-05 Score=80.80 Aligned_cols=184 Identities=14% Similarity=0.069 Sum_probs=123.7
Q ss_pred hhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCC-----CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy10471 5 KNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDE-----QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE 78 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~-----~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~ 78 (318)
.++.+=++|.+|..+.. .-.++++++++.++.+.... .+.++.+.+.++|++.++.... ++.+.+++..|++
T Consensus 496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl~~L~~ 573 (1073)
T 3gjx_A 496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKTVVNKLFE 573 (1073)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHHHHHHHHH
Confidence 44555566666532221 23478889999888777443 3566777889999999986532 6788889999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHhhhCHH----------HHHHHHHHhhcc--c--chhhHHHHHHHHHHHHhhcCcc----
Q psy10471 79 LLKAHKKAIRRATVNTFGYIAKAIGPH----------DVLATLLNNLKV--Q--ERQNRVCTTVAIAIVAETCSPF---- 140 (318)
Q Consensus 79 ~L~d~~~~vR~~av~~lg~la~~igp~----------~~l~~Ll~~Lk~--~--~~~~R~~~~~ai~~i~~~~~p~---- 140 (318)
.+.++++.|+.+|..||..+++.++.. ..+..+++.+.. . +.+.....++|+|.+....++-
T Consensus 574 ~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~ 653 (1073)
T 3gjx_A 574 FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQE 653 (1073)
T ss_dssp HTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHH
Confidence 999988999999999999999887642 134555554431 1 2245566788998877655531
Q ss_pred ----cchHHHHHHhc--------------CCcchHH--HHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471 141 ----TVLPALMNEYR--------------VPELNVQ--NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL 191 (318)
Q Consensus 141 ----~vip~L~~~~~--------------d~~~~v~--~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l 191 (318)
.+||...+.+. |++ .++ ..++++...++.++|..|.+++..+.|.+.++-
T Consensus 654 ~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~-~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y 723 (1073)
T 3gjx_A 654 HLIEKYMLLPNQVWDSIIQQATKNVDILKDPE-TVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVY 723 (1073)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH-HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhccChH-HHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 34444433332 222 122 568888888899999888888877777665543
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.27 E-value=2e-06 Score=68.44 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=69.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHH
Q psy10471 31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLAT 110 (318)
Q Consensus 31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~ 110 (318)
++.+...++|+++.||..|+++||++.. . + .+..|++.|+|++..||..|++++|.++ ....++.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~-~---a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~ 108 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD-------E-R---AVEPLIKLLEDDSGFVRSGAARSLEQIG----GERVRAA 108 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------H-H---HHHHHHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------H-H---HHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHH
Confidence 4788899999999999999999998864 1 1 2344556678989999999999999875 3457888
Q ss_pred HHHhhcccchhhHHHHHHHHH
Q psy10471 111 LLNNLKVQERQNRVCTTVAIA 131 (318)
Q Consensus 111 Ll~~Lk~~~~~~R~~~~~ai~ 131 (318)
|...|++++..+|..++.+++
T Consensus 109 L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 109 MEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 999998888788888887764
No 83
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.19 E-value=6e-05 Score=67.58 Aligned_cols=172 Identities=8% Similarity=-0.010 Sum_probs=118.5
Q ss_pred hhhhHHHHHHHHHHHhc-----cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-h----hhHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMG-----CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-A----REWMRIC 73 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g-----~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~----~~~~~il 73 (318)
+|-.|+..+..+..... +...+....+.+.+...+.|.|..|...++.++..++...+.... . .....++
T Consensus 25 ~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l 104 (278)
T 4ffb_C 25 ARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWT 104 (278)
T ss_dssp HHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Confidence 56677776665544221 123344556677788888999999999999999999987664322 2 2223344
Q ss_pred HHHHHH-hhhchHHHHHHHHHHHHHHHhhhCH-HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc---------cc
Q psy10471 74 FELLEL-LKAHKKAIRRATVNTFGYIAKAIGP-HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---------TV 142 (318)
Q Consensus 74 ~~Ll~~-L~d~~~~vR~~av~~lg~la~~igp-~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~---------~v 142 (318)
..|++- +.+.++.+|..++.++-.+++..++ ..++..++..++...-+.|..+...+..+...+|+. .+
T Consensus 105 ~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i 184 (278)
T 4ffb_C 105 PLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPEL 184 (278)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHH
Confidence 445543 6778888999999998887776654 567788888887655578888887777655554431 35
Q ss_pred hHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc
Q psy10471 143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEM 175 (318)
Q Consensus 143 ip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~ 175 (318)
++.+...+.|.+.+||.++.+++..+.+.+|..
T Consensus 185 ~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 185 LKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp GGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 667777889999999999999999999999864
No 84
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.16 E-value=4.7e-05 Score=80.31 Aligned_cols=261 Identities=7% Similarity=-0.019 Sum_probs=160.0
Q ss_pred HHHHHHHHHhccCcCCChH-hHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhhCCCCC--------ChhhHHHHHHHHH
Q psy10471 10 KIVQQIAILMGCAILPHLK-NLVEIIEHGLV---DEQQKVQENCIDLVGRIADRGPEYV--------SAREWMRICFELL 77 (318)
Q Consensus 10 ~~i~~La~~~g~~~~P~l~-~l~~~l~~~l~---d~~~~vR~aa~~~LG~la~~~~~~i--------~~~~~~~il~~Ll 77 (318)
.+++.++.+++....+++- .+.+.+...+. +.++..+++|+.++|.++++..... ..+.+.+++..++
T Consensus 420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 5667777766666666444 34444445553 3468999999999999999765311 1245555555443
Q ss_pred H--HhhhchHHHHHHHHHHHHHHHhhhCH--H---HHHHHHHH--hhcccchhhHHHHHHHHHHHHhhcCcc--cchHHH
Q psy10471 78 E--LLKAHKKAIRRATVNTFGYIAKAIGP--H---DVLATLLN--NLKVQERQNRVCTTVAIAIVAETCSPF--TVLPAL 146 (318)
Q Consensus 78 ~--~L~d~~~~vR~~av~~lg~la~~igp--~---~~l~~Ll~--~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L 146 (318)
+ ..+++++.||..+++++|+.++-+.. . .+++.+++ .+.+++.++|..++.++..+++.|.+. .-++.+
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~i 579 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESS 579 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 2 11267889999999999999987653 2 34555555 444555578888889999998888752 334445
Q ss_pred HHHhcC-------Cc------------------chHHHHHHHHHHHHHHHHcc---ccccchhhhHHHHHHHHh----cC
Q psy10471 147 MNEYRV-------PE------------------LNVQNGVLKALSFLFEYIGE---MGKDYIYAVTPLLEDALM----DR 194 (318)
Q Consensus 147 ~~~~~d-------~~------------------~~v~~~vl~al~~i~~~lg~---~~~~yl~~iiP~l~~~l~----~~ 194 (318)
++.+++ +. -+-+-.+.++++.+....+. .-..|+..+++.+.+-+. ..
T Consensus 580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~ 659 (980)
T 3ibv_A 580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSD 659 (980)
T ss_dssp HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 554432 10 01245688888888887653 455788877766554442 11
Q ss_pred ----CHHHH-HHHHHHHHHHhhhhcCC-C----chhHHHHHHHhhhhccc--CCChHHHHHHHHHHHHHHHHcChhh--H
Q psy10471 195 ----DLVHR-QTACATIKHMALGVYGF-G----CEDALTHLLNYVWPNIF--ETSPHLVQAFMDAVEGLRVALGPVR--I 260 (318)
Q Consensus 195 ----~~~~R-~~a~~~i~~la~~~~~~-~----~~~~i~hll~~l~~~i~--d~~~~vr~~ii~~i~~i~~alG~~~--~ 260 (318)
+...+ .....+++.++.+.... + ..+.+....+.++..+. ..+..+|.++..++.++...+|.+. +
T Consensus 660 ~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~ 739 (980)
T 3ibv_A 660 LSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPK 739 (980)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTT
T ss_pred ccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHH
Confidence 22111 12334445555543211 0 12344444443322222 3578999999999999999999975 6
Q ss_pred HHhHHHHhcc
Q psy10471 261 LQYVLQGLFH 270 (318)
Q Consensus 261 ~~~vl~~l~~ 270 (318)
.|.++..++.
T Consensus 740 lp~~i~~ll~ 749 (980)
T 3ibv_A 740 VPQLISILLN 749 (980)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6667776653
No 85
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.16 E-value=0.00025 Score=70.54 Aligned_cols=256 Identities=14% Similarity=0.069 Sum_probs=154.8
Q ss_pred CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471 24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG 103 (318)
Q Consensus 24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig 103 (318)
.++-+.-+|.++..|+..++.++..|+++|..+|....+.-..---...+..|+++|++++..+|+.|+++++.|+...+
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 34445567778888888899999999999999996433211000001234557788899889999999999999995322
Q ss_pred HH--------HHHHHHHHhhcc-cchhhHHHHHHHHHHHHhhcCc-----ccchHHHHHHhc-----------------C
Q psy10471 104 PH--------DVLATLLNNLKV-QERQNRVCTTVAIAIVAETCSP-----FTVLPALMNEYR-----------------V 152 (318)
Q Consensus 104 p~--------~~l~~Ll~~Lk~-~~~~~R~~~~~ai~~i~~~~~p-----~~vip~L~~~~~-----------------d 152 (318)
+. -.++.|++.|+. .+...+..++-++..++..-.. ...+|+|++.+. +
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 32 257889999985 3445556666666655431000 135788887551 1
Q ss_pred -CcchHHHHHHHHHHHHHHHHccccccch---hhhHHHHHHHHhc------CCHHHHHHHHHHHHHHhhhhc--------
Q psy10471 153 -PELNVQNGVLKALSFLFEYIGEMGKDYI---YAVTPLLEDALMD------RDLVHRQTACATIKHMALGVY-------- 214 (318)
Q Consensus 153 -~~~~v~~~vl~al~~i~~~lg~~~~~yl---~~iiP~l~~~l~~------~~~~~R~~a~~~i~~la~~~~-------- 214 (318)
++.+++..+..+|..+... +.....-+ ..+++.+.++++. .+....+.+..++..|+-.+.
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred cccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 2356777777777766531 11112222 3466777777753 355677888888877664431
Q ss_pred ----------------CCCch-----hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH-----------HcChhhHHH
Q psy10471 215 ----------------GFGCE-----DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV-----------ALGPVRILQ 262 (318)
Q Consensus 215 ----------------~~~~~-----~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~-----------alG~~~~~~ 262 (318)
..|.+ ..+..++..+-. ..+++++..++.+|..++. .+..+.-.|
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~---s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE---SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 01111 122222223212 2568899999888877753 233344577
Q ss_pred hHHHHhccccccchHHHHHHH
Q psy10471 263 YVLQGLFHPARKVRDVYWKIY 283 (318)
Q Consensus 263 ~vl~~l~~~a~~~r~~~w~i~ 283 (318)
.+...+.++...++..-...+
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL 379 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGAL 379 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 777777777766555333334
No 86
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.07 E-value=0.00013 Score=68.19 Aligned_cols=185 Identities=13% Similarity=0.169 Sum_probs=121.6
Q ss_pred CcCCC--hHh--HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy10471 22 AILPH--LKN--LVEIIEHGLVDE--QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTF 95 (318)
Q Consensus 22 ~~~P~--l~~--l~~~l~~~l~d~--~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~l 95 (318)
+..|| ++. +++- ...+++. +++.++.+++.+=.+-..|.++. -.|...+++..++.+++++...|+...-.+
T Consensus 15 ~~~p~~~~~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~-~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl 92 (355)
T 3tjz_B 15 GSNPFQHLEKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLG-TTEATEAFFAMTKLFQSNDPTLRRMCYLTI 92 (355)
T ss_dssp -----CCCCHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHGGGGCCCHHHHHHHHHHH
T ss_pred ccCccccchHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45666 333 5555 4577775 56665655555555555444332 566777888888888888888888777666
Q ss_pred HHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc
Q psy10471 96 GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM 175 (318)
Q Consensus 96 g~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~ 175 (318)
..+++. |.++ .-+++++++.++++++-++..++.+++.+..
T Consensus 93 ~~~~~~--~~e~--------------------------------iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----- 133 (355)
T 3tjz_B 93 KEMSCI--AEDV--------------------------------IIVTSSLTKDMTGKEDSYRGPAVRALCQITD----- 133 (355)
T ss_dssp HHHTTT--SSCG--------------------------------GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-----
T ss_pred HHhCCC--HHHH--------------------------------HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-----
Confidence 666653 2211 1345567788888887777777777776543
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
...++.+.+.+.+.+.|+++-+|+.|+-.+.++..... +.+.++++.+.+.+.|.++-|...++.++..++.
T Consensus 134 -~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 134 -STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp -TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 34566777888888888888888888888777755543 5566677776666777787787777777777764
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.03 E-value=0.00091 Score=59.87 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH----hhhchHHHHHHHHHHHHHHHhhhC-------HH---
Q psy10471 40 DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL----LKAHKKAIRRATVNTFGYIAKAIG-------PH--- 105 (318)
Q Consensus 40 d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~----L~d~~~~vR~~av~~lg~la~~ig-------p~--- 105 (318)
+.+.+.|.+|+..|-...+.. .++....+..+++- +.|++..+-..+++.+..+.+.++ ++
T Consensus 57 s~d~k~~~~ale~L~~~l~~~-----~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTS-----PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHC-----HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhC-----hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 446788888888888766542 23333333323322 235666666666666655543332 22
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH-
Q psy10471 106 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT- 184 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii- 184 (318)
.+++.|+.-+-+...++|..+-..+..+...+.|..+.+.+++-++.-+..++...+..+.++.+..|... ...+
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~ 207 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS 207 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence 24555555554444455555555555555555555666666666666555566666666666666666442 2233
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471 185 --PLLEDALMDRDLVHRQTACATIKHMAL 211 (318)
Q Consensus 185 --P~l~~~l~~~~~~~R~~a~~~i~~la~ 211 (318)
|.+-..+.|+|..+|..|.+++..+=.
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 555566666666666666666544433
No 88
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00034 Score=71.26 Aligned_cols=222 Identities=11% Similarity=0.109 Sum_probs=148.4
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH---HHHHHHHHHHHHHhhhCHH
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA---IRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~---vR~~av~~lg~la~~igp~ 105 (318)
..+|.+...++..++.+|+.|+++|+.++.........-+ ...+..|++.|.+.... .|..|..+++.+.-...|.
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 4778888889999999999999999999864221110000 12444567777774433 8999999999988666554
Q ss_pred ---------HHHHHHHHhhcc-cch-------------hhHHHHHHHHHHHHhhc--------C---cc-cchHHHHHHh
Q psy10471 106 ---------DVLATLLNNLKV-QER-------------QNRVCTTVAIAIVAETC--------S---PF-TVLPALMNEY 150 (318)
Q Consensus 106 ---------~~l~~Ll~~Lk~-~~~-------------~~R~~~~~ai~~i~~~~--------~---p~-~vip~L~~~~ 150 (318)
..++.|++.|.. .+. ..+..++.|+..++..- . .. .++|.+.+.+
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL 615 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM 615 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence 456788888872 221 12556667766555321 1 11 4789999999
Q ss_pred cCCcchHHHHHHHHHHHHHHHHccccccch----hh---hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc----CC-Cc
Q psy10471 151 RVPELNVQNGVLKALSFLFEYIGEMGKDYI----YA---VTPLLEDALMDRDLVHRQTACATIKHMALGVY----GF-GC 218 (318)
Q Consensus 151 ~d~~~~v~~~vl~al~~i~~~lg~~~~~yl----~~---iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~----~~-~~ 218 (318)
.+++..+|++++++++.+...-......|. +. =++.+..++...|...|+.|+.+++.++.... .. ..
T Consensus 616 ~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~ 695 (778)
T 3opb_A 616 LDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695 (778)
T ss_dssp GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 988889999999999999974321112333 12 26788899999999999999999988853221 11 11
Q ss_pred hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 219 ~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
...+..++..+ ... .+++++|...+-++..++.
T Consensus 696 ~~gi~~Ll~lL-~~~-~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 696 KELIENAIQVF-ADQ-IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHH-HHT-TTCHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHH-hcc-CCCHHHHHHHHHHHHHHHH
Confidence 23444444432 222 2688999999999999985
No 89
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.98 E-value=0.00021 Score=75.80 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-----chHHHHHHHHHHHHHHHhhhCHH-HHHHHHHHh
Q psy10471 41 EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-----HKKAIRRATVNTFGYIAKAIGPH-DVLATLLNN 114 (318)
Q Consensus 41 ~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-----~~~~vR~~av~~lg~la~~igp~-~~l~~Ll~~ 114 (318)
.++..++++++++|-+|....+...-+.++.++..|+++... ++..+|...+.++|+..+-+.-+ +.+.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~----- 565 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK----- 565 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----
Confidence 469999999999999995333211112344454555554432 23345555668899877643211 1111
Q ss_pred hcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc--------ccchhhhHHH
Q psy10471 115 LKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG--------KDYIYAVTPL 186 (318)
Q Consensus 115 Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~--------~~yl~~iiP~ 186 (318)
.++..++.-+.+.++.++.+++.|+..+++..+..+ .+|+.+++..
T Consensus 566 --------------------------~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~ 619 (1073)
T 3gjx_A 566 --------------------------TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN 619 (1073)
T ss_dssp --------------------------HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTS
T ss_pred --------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Confidence 233346666778888999999999999988777654 4588888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHH---hhhhcccC---------CChH---HHHHHHHHHHH
Q psy10471 187 LEDALMDRDLVHRQTACATIKHMALGVYGFG-CEDALTHLLN---YVWPNIFE---------TSPH---LVQAFMDAVEG 250 (318)
Q Consensus 187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~---~l~~~i~d---------~~~~---vr~~ii~~i~~ 250 (318)
+.....+=++.-.....++++.++....... ....+..+++ --|..+-+ .+++ -...++.+..+
T Consensus 620 ~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~ 699 (1073)
T 3gjx_A 620 INTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVR 699 (1073)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHH
Confidence 8887766677777777888888877764221 1223333221 11222221 1233 23456677778
Q ss_pred HHHHcChhh--HHHhHHHHh
Q psy10471 251 LRVALGPVR--ILQYVLQGL 268 (318)
Q Consensus 251 i~~alG~~~--~~~~vl~~l 268 (318)
+|.++|..+ ..+.+++-|
T Consensus 700 v~~~~g~~f~~~~~~i~~~~ 719 (1073)
T 3gjx_A 700 ACKAVGHPFVIQLGRIYLDM 719 (1073)
T ss_dssp HHHHHCGGGHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHH
Confidence 999999865 444455545
No 90
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.84 E-value=0.0009 Score=56.49 Aligned_cols=202 Identities=15% Similarity=0.157 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCc--ccchHH
Q psy10471 71 RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSP--FTVLPA 145 (318)
Q Consensus 71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p--~~vip~ 145 (318)
.++..++..|.|+-..||..|+..+..+++....- -++..|+-.++ ++.-..-..++.++|.++..--. -.++|.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~ 111 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPV 111 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHH
Confidence 45667778888877779999999999998755431 35666666666 33335556788888888754321 279999
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHH
Q psy10471 146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL 225 (318)
Q Consensus 146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hl 225 (318)
+...|+-.++-.+-.+--++..|.+.-. .-++.+.--+...+++.|...|..+.+.++.+..+- -..+..+
T Consensus 112 lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~Pf 182 (253)
T 2db0_A 112 LFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPF 182 (253)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGG
T ss_pred HHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcc
Confidence 9999999988888777777777776521 233555566677778889999999999997764432 3566678
Q ss_pred HHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh--cccc-----ccchHHHHHHH
Q psy10471 226 LNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL--FHPA-----RKVRDVYWKIY 283 (318)
Q Consensus 226 l~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l--~~~a-----~~~r~~~w~i~ 283 (318)
+|++...+.|.+.-||.++.++++.++.. .+.+.+-+..-+ |.|. ++|+++.-|+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999998653 344777777777 4444 34666666554
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.69 E-value=0.0009 Score=65.43 Aligned_cols=232 Identities=11% Similarity=0.125 Sum_probs=151.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC----CCChhhHHHHHHHH-----HHHhhh----c-hHHHHHHHHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE----YVSAREWMRICFEL-----LELLKA----H-KKAIRRATVNTF 95 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~----~i~~~~~~~il~~L-----l~~L~d----~-~~~vR~~av~~l 95 (318)
+...+..-|=|+.|.+|..|+.+|.++...-|. ...... .+...| |+...| + -..||..|-.++
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 666677777788999999999999999864431 111111 222222 233333 2 335999999999
Q ss_pred HHHHhhhCHH-HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Q psy10471 96 GYIAKAIGPH-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 173 (318)
Q Consensus 96 g~la~~igp~-~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg 173 (318)
|.+ ..+.+. .++..++..+..+.-++|..-..++.++.+-.... .++|+++.-++|++.+|+..+..++.-++
T Consensus 253 GaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---- 327 (800)
T 3oc3_A 253 SRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---- 327 (800)
T ss_dssp HHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----
T ss_pred HHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc----
Confidence 999 777654 56666665554444467777777776663333222 67889999999999999998888887766
Q ss_pred cccccchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHH
Q psy10471 174 EMGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL 251 (318)
Q Consensus 174 ~~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i 251 (318)
..+.++.++-.+=+.+.+-| ..--....++++.+...-...... ..+.|+++|.+..+-++||.+++.++.++
T Consensus 328 --~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~d---p~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 328 --ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIP---PERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp --CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCC---SGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred --chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccC---hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 24567777777777776443 111122233333332222111111 27889999999999999999999999888
Q ss_pred HHHcChhhHHHhHHHHh-ccccccchH
Q psy10471 252 RVALGPVRILQYVLQGL-FHPARKVRD 277 (318)
Q Consensus 252 ~~alG~~~~~~~vl~~l-~~~a~~~r~ 277 (318)
. .+.++..+++-+ ++....+++
T Consensus 403 L----~~~~LRLIFQNILLE~neeIl~ 425 (800)
T 3oc3_A 403 S----EESIDFLVAEVVLIEEKDEIRE 425 (800)
T ss_dssp C----CHHHHHHHHHHHHHCSCHHHHH
T ss_pred H----hhhHHHHHHHHHHhCCcHHHHH
Confidence 7 455666666665 566655666
No 92
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.66 E-value=0.0015 Score=64.82 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHHHhhC----CC---CC-------------C--hhhH---HHHHHHHHHHhhh-chHHHHHHHHHH
Q psy10471 41 EQQKVQENCIDLVGRIADRG----PE---YV-------------S--AREW---MRICFELLELLKA-HKKAIRRATVNT 94 (318)
Q Consensus 41 ~~~~vR~aa~~~LG~la~~~----~~---~i-------------~--~~~~---~~il~~Ll~~L~d-~~~~vR~~av~~ 94 (318)
.+....+.|+.+|..|+... +. +. . -.+| ...+..|+.+|++ .++.+++.|+.+
T Consensus 253 ~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~A 332 (584)
T 3l6x_A 253 SDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA 332 (584)
T ss_dssp CSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHH
Confidence 45678899999999988541 10 00 0 0111 2455667788876 578899999999
Q ss_pred HHHHHhhhCH-----------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-----ccchHHHHHHhcCCc----
Q psy10471 95 FGYIAKAIGP-----------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-----FTVLPALMNEYRVPE---- 154 (318)
Q Consensus 95 lg~la~~igp-----------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-----~~vip~L~~~~~d~~---- 154 (318)
+..++..-++ ...++.|++.|+.++...+..++.++..++....- ..++|.|++.+..++
T Consensus 333 L~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~ 412 (584)
T 3l6x_A 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSS 412 (584)
T ss_dssp HHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGG
T ss_pred HHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccccc
Confidence 9988743222 24588899999887778888888899887753221 368999999998763
Q ss_pred ----chHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcC--CHHHHHHHHHHHHHHhh
Q psy10471 155 ----LNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDR--DLVHRQTACATIKHMAL 211 (318)
Q Consensus 155 ----~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~--~~~~R~~a~~~i~~la~ 211 (318)
.++...++.++..+...-....+..+ ...+|.+.+++++. +...++.|+.++..+..
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 34566777777776632111222222 35889999999876 78999999999988874
No 93
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.65 E-value=0.0038 Score=54.61 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=104.8
Q ss_pred hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchH
Q psy10471 66 AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLP 144 (318)
Q Consensus 66 ~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip 144 (318)
.+++.++...|. ++++.++|-.|+..+|+. . .. .++++.+...+- ++.=++|.+++.+++.++...+|-..++
T Consensus 69 ~~~~~~la~~L~---~~~~deVR~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~ 142 (240)
T 3l9t_A 69 GEYIKKLAFLAY---QSDVYQVRMYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP 142 (240)
T ss_dssp HHHHHHHHHHHH---TCSSHHHHHHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHH---hCcchHHHHHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 567788877666 888899999999999988 3 22 345555555343 3333899999999998887667777888
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG 212 (318)
Q Consensus 145 ~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~ 212 (318)
.+..=.+|++..+|+.+....--.++ ...++..-..++|.+.....|.+..+|+..+..+..++..
T Consensus 143 ~~~~W~~d~n~~VRR~Ase~~rpW~~--~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 143 IIDEWLKSSNLHTRRAATEGLRIWTN--RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp HHHHHHHCSSHHHHHHHHHHTCSGGG--STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHhhHHHhc--cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 88877799999999887776543221 1334555567999999999999999999999999888654
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.56 E-value=0.0083 Score=52.44 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=124.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----c
Q psy10471 72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----F 140 (318)
Q Consensus 72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~ 140 (318)
.+..|+.+|.+.++.++..|+-+++.+-+.++. ..+++.+++.++.++.++-.-..+++..+-+...+ |
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 444566777998889999999999999887643 25788888898877765544556666666554432 3
Q ss_pred -cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc-
Q psy10471 141 -TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC- 218 (318)
Q Consensus 141 -~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~- 218 (318)
.++.++.+..+.++.-++..+...++.+ ......+.++..+..++...+..++..+..++..++......+.
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 7899999999987766666555554433 33445688999999999999999999999999998887643322
Q ss_pred hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471 219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254 (318)
Q Consensus 219 ~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a 254 (318)
++.+..+. ..+..+++.++.-++++++.+...
T Consensus 188 ~~I~~eI~----elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 188 TLILDEIP----SLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGTTTTHH----HHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH----HHHcCCCHHHHHHHHHHHHHHHcC
Confidence 23332322 223337899999999999988554
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.51 E-value=0.00035 Score=61.21 Aligned_cols=135 Identities=14% Similarity=0.105 Sum_probs=103.5
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE-LLKAHKKAIRRATVNTFGYIAKAIGPH 105 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~-~L~d~~~~vR~~av~~lg~la~~igp~ 105 (318)
.++++++...+.+|+...||-.|+..||+. . + ..+.++.+. + +-.|++..||..+-.+|+.++...+|.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---~---~~~~L~~ir---~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---K---DKEILIFMR---DEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T---T---SHHHHHHHH---HTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c---C---cHHHHHHHH---HHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 677888888888888899999999999998 3 1 234444433 4 334577789999999999999778998
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471 106 DVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY 171 (318)
Q Consensus 106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~ 171 (318)
..++.+..-.++++..+|+.++...-.-+ ..-.|..++|.+-+...|++..||++|..+|..+.|.
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 77777787778888889998887653211 2233457888888888999999999999999988774
No 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.46 E-value=0.0002 Score=66.90 Aligned_cols=222 Identities=9% Similarity=0.056 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|-.|+++++.+.. ..-++.+.+.+...+.|.+|.||++|+-+...+....++. .+.|..-+. +.+.|.+
T Consensus 121 R~lALRtL~~I~~------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~--v~~~~~~l~---~ll~d~n 189 (355)
T 3tjz_B 121 RGPAVRALCQITD------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV--VKRWVNEAQ---EAASSDN 189 (355)
T ss_dssp HHHHHHHHHHHCC------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH--HHTTHHHHH---HHTTCSS
T ss_pred HHHHHHHHhcCCC------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH--HHHHHHHHH---HHhcCCC
Confidence 4466777776655 3346677777888889999999999998888887765543 244555444 5668888
Q ss_pred HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccc---hhhHHHHHHHHHHHHhh---cCcccchHHHHHHhcCCcchHH
Q psy10471 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE---RQNRVCTTVAIAIVAET---CSPFTVLPALMNEYRVPELNVQ 158 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~---~~~R~~~~~ai~~i~~~---~~p~~vip~L~~~~~d~~~~v~ 158 (318)
+.|...|+..+..+.+ .++. .+..|+..+.... .-..+...+.++.++.. .....+++.+...++..+..|.
T Consensus 190 ~~V~~~Al~lL~ei~~-~d~~-a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVv 267 (355)
T 3tjz_B 190 IMVQYHALGLLYHVRK-NDRL-AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVV 267 (355)
T ss_dssp HHHHHHHHHHHHHHHT-TCHH-HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHH
T ss_pred ccHHHHHHHHHHHHHh-hchH-HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHH
Confidence 8888888888887775 3432 3334444443211 11111122222111111 0112445555555565555565
Q ss_pred HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCCh
Q psy10471 159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSP 238 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~ 238 (318)
=.+++++..+-. .+ ...+...++.+..++..+++++|-.+...+..++..-. +.++....-+...+.|++.
T Consensus 268 yEa~k~I~~l~~-~~---~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-----~~v~~~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 268 YEAASAIVNLPG-CS---AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-----SAVTACNLDLENLVTDANR 338 (355)
T ss_dssp HHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------
T ss_pred HHHHHHHHhccC-CC---HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-----HHHHHHHHHHHHHccCCcH
Confidence 555566655432 11 12234455667788888899999888888777655432 3344344444667777776
Q ss_pred HHHHHHHHHH
Q psy10471 239 HLVQAFMDAV 248 (318)
Q Consensus 239 ~vr~~ii~~i 248 (318)
.+.--++.++
T Consensus 339 sI~t~Aittl 348 (355)
T 3tjz_B 339 SIATLAITTL 348 (355)
T ss_dssp ----------
T ss_pred hHHHHHHHHh
Confidence 6655544443
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.39 E-value=0.0082 Score=58.80 Aligned_cols=224 Identities=12% Similarity=0.092 Sum_probs=145.4
Q ss_pred hhhhHHHHHHHHHHHhcc--CcCCChH-hHHHHH-----Hhhc----CCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHH
Q psy10471 4 DKNLGIKIVQQIAILMGC--AILPHLK-NLVEII-----EHGL----VDEQ-QKVQENCIDLVGRIADRGPEYVSAREWM 70 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~--~~~P~l~-~l~~~l-----~~~l----~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~ 70 (318)
.||-|..++.|+....|. +..-..+ ++.-.+ ++.+ .|+- ..||++|+.+||.+ ...++. .
T Consensus 190 iRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~ 262 (800)
T 3oc3_A 190 KRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------N 262 (800)
T ss_dssp HHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------C
T ss_pred hhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh------H
Confidence 599999999999998764 1111111 322221 2333 3433 67999999999999 544432 2
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc---cchHHH
Q psy10471 71 RICFELLELLKAHKKAIRRATVNTFGYIAKAIG-PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPAL 146 (318)
Q Consensus 71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig-p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~---~vip~L 146 (318)
.++..++..+..+...+|+.++=.+-++.+.+. -..+++.++..|++.+-.+|..+|.++--++ .|. .++..+
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iL 339 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKC 339 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHH
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHH
Confidence 355544443344555699999988888844443 2357888889999888889988888886554 331 444444
Q ss_pred HHHhcCC-cchH-HHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH
Q psy10471 147 MNEYRVP-ELNV-QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH 224 (318)
Q Consensus 147 ~~~~~d~-~~~v-~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h 224 (318)
-+.+.+- +.+. -.++...++.++..-...+. -+.++|.+--++++.-++||++...++..+. ..+.+.|
T Consensus 340 Wd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRL 410 (800)
T 3oc3_A 340 WKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFL 410 (800)
T ss_dssp HHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHH
T ss_pred HHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHH
Confidence 4444432 2332 36677777777764221111 1488899999999999999999999986654 2244555
Q ss_pred HHHhhhhcccCCChHHHHHHHHHHH
Q psy10471 225 LLNYVWPNIFETSPHLVQAFMDAVE 249 (318)
Q Consensus 225 ll~~l~~~i~d~~~~vr~~ii~~i~ 249 (318)
+...+ +.|++++++....+.+.
T Consensus 411 IFQNI---LLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 411 VAEVV---LIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHH---HHCSCHHHHHHHHHHHH
T ss_pred HHHHH---HhCCcHHHHHHHHHHHH
Confidence 54333 55789999999888886
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.32 E-value=0.0043 Score=54.42 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=94.4
Q ss_pred hHHHHHHhhcCCCCH--HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471 29 NLVEIIEHGLVDEQQ--KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD 106 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~--~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~ 106 (318)
-.+|.++..|+.+++ .++..|+++|..++....+.-..---...+..|+++|++++..+|+.|.+++..|+.. .+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~- 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DND- 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHH-
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHH-
Confidence 346777888888776 8999999999999975432110000012445677888998899999999999999852 221
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc-CCcchHHHHHHHHHHHHHHHHccccccch-hhhH
Q psy10471 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVT 184 (318)
Q Consensus 107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~-d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~ii 184 (318)
.|..+. + ...+|.|++.++ .++.++++.+..++-.+... ...+.-+ ..-+
T Consensus 86 ---------------nk~~I~-------~----~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~~i 137 (233)
T 3tt9_A 86 ---------------NKLEVA-------E----LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITEAL 137 (233)
T ss_dssp ---------------HHHHHH-------H----TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHHHH
T ss_pred ---------------HHHHHH-------H----cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhccH
Confidence 111111 1 145777888776 45677777777776666432 1112111 2234
Q ss_pred HHHHHHHh----------------cCCHHHHHHHHHHHHHHhh
Q psy10471 185 PLLEDALM----------------DRDLVHRQTACATIKHMAL 211 (318)
Q Consensus 185 P~l~~~l~----------------~~~~~~R~~a~~~i~~la~ 211 (318)
|.+.+.+. ..+..++..++..+..++.
T Consensus 138 ~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 138 LTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence 44444321 1256888888888877765
No 99
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.22 E-value=0.051 Score=58.49 Aligned_cols=127 Identities=6% Similarity=0.028 Sum_probs=85.3
Q ss_pred CCChH-hHHHHHHhhc---CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh------------chHHH
Q psy10471 24 LPHLK-NLVEIIEHGL---VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA------------HKKAI 87 (318)
Q Consensus 24 ~P~l~-~l~~~l~~~l---~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d------------~~~~v 87 (318)
.++++ .+.+.+++.+ +..+|.+|..++.++|.+..+... .+..+.+++..++..+.+ ..+++
T Consensus 523 ~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~--~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~v 600 (1204)
T 3a6p_A 523 REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY--RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNV 600 (1204)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT--CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHH
T ss_pred cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhhccCCcccccccccHHHHHH
Confidence 35555 3455555543 446899999999999999987553 255667777777777665 45689
Q ss_pred HHHHHHHHHHHHhhhCHH------HHHHHHHHhhcccc---hhhHHHHHHHHHHHHhhcCcc--------cchHHHHHHh
Q psy10471 88 RRATVNTFGYIAKAIGPH------DVLATLLNNLKVQE---RQNRVCTTVAIAIVAETCSPF--------TVLPALMNEY 150 (318)
Q Consensus 88 R~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~~---~~~R~~~~~ai~~i~~~~~p~--------~vip~L~~~~ 150 (318)
|++|..+|..+++.+++. .+...+-..+...+ ...+....+++++++...+|+ .+++++++.+
T Consensus 601 r~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w 680 (1204)
T 3a6p_A 601 RRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIW 680 (1204)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877543 23333333333222 357788899998887665552 4666777666
Q ss_pred cC
Q psy10471 151 RV 152 (318)
Q Consensus 151 ~d 152 (318)
.+
T Consensus 681 ~~ 682 (1204)
T 3a6p_A 681 LS 682 (1204)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 100
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0078 Score=61.33 Aligned_cols=209 Identities=14% Similarity=0.074 Sum_probs=137.3
Q ss_pred hhhhHHHHHHHHHHHhccCcCCCh--HhHHHHHHhhcCCCCHH---HHHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHH
Q psy10471 4 DKNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVDEQQK---VQENCIDLVGRIADRGPEYV--SAREWMRICFEL 76 (318)
Q Consensus 4 ~r~~~l~~i~~La~~~g~~~~P~l--~~l~~~l~~~l~d~~~~---vR~aa~~~LG~la~~~~~~i--~~~~~~~il~~L 76 (318)
-|+.++++|..|+.--. .+..+ +.-++.+++.+.+.++. +|..|+.+|.+++...-+.. ........+..|
T Consensus 473 ~re~A~~aL~nLS~d~~--~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pL 550 (778)
T 3opb_A 473 CKQQVVRIIYNITRSKN--FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFL 550 (778)
T ss_dssp HHHHHHHHHHHHHTSGG--GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHH
Confidence 36678888888876311 11111 24567788888886544 89999999999995442110 000001355556
Q ss_pred HHHhhh-chH-------------HHHHHHHHHHHHHHhhhCH------H------HHHHHHHHhhcccchhhHHHHHHHH
Q psy10471 77 LELLKA-HKK-------------AIRRATVNTFGYIAKAIGP------H------DVLATLLNNLKVQERQNRVCTTVAI 130 (318)
Q Consensus 77 l~~L~d-~~~-------------~vR~~av~~lg~la~~igp------~------~~l~~Ll~~Lk~~~~~~R~~~~~ai 130 (318)
+++|.. +.. --+..|+.+++.++..-++ . ..++.|.+.|.++....|..++.++
T Consensus 551 v~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI 630 (778)
T 3opb_A 551 FELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630 (778)
T ss_dssp HHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 677772 111 1277899999999863221 1 2466677777766668899999999
Q ss_pred HHHHhhcC----cc---c------chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc--
Q psy10471 131 AIVAETCS----PF---T------VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-- 193 (318)
Q Consensus 131 ~~i~~~~~----p~---~------vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~-- 193 (318)
..++.... .+ . =++.|+..++..+.++|.++..++..+...-...+...+ ...+..+.+++.+
T Consensus 631 ~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~ 710 (778)
T 3opb_A 631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI 710 (778)
T ss_dssp HHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC
Confidence 76652111 11 1 177888999888999999999999987654333333333 3477888888888
Q ss_pred CCHHHHHHHHHHHHHHhhhhc
Q psy10471 194 RDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 194 ~~~~~R~~a~~~i~~la~~~~ 214 (318)
.+..+|..++.++..|+....
T Consensus 711 ~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 711 DDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp TCHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999987553
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.07 E-value=9.5e-05 Score=65.54 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=87.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHh
Q psy10471 35 EHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNN 114 (318)
Q Consensus 35 ~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~ 114 (318)
..+++|++++||+++++.++ +. . +..+++|++..||..+.+.+ ++ ..|...
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-------~~--------~---l~~L~~D~~~~VR~~aA~~L-------~~----~~L~~l 106 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-------VE--------A---LTPLIRDSDEVVRRAVAYRL-------PR----EQLSAL 106 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-------GG--------G---GGGGTTCSSHHHHHHHHTTS-------CS----GGGGGT
T ss_pred HHHhcCCCHHHHHHHHHhCC-------HH--------H---HHHHccCcCHHHHHHHHHHC-------CH----HHHHHH
Confidence 36678999999999998642 11 1 33556888889999888753 22 235556
Q ss_pred hcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC
Q psy10471 115 LKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194 (318)
Q Consensus 115 Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~ 194 (318)
+++++..+|..++..+ |. +.+....+|++.+|+..+...+ + + +.+..+++|.
T Consensus 107 l~D~d~~VR~~aA~~l--------~~---~~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~l~~l~~D~ 158 (244)
T 1lrv_A 107 MFDEDREVRITVADRL--------PL---EQLEQMAADRDYLVRAYVVQRI-------P-------P---GRLFRFMRDE 158 (244)
T ss_dssp TTCSCHHHHHHHHHHS--------CT---GGGGGGTTCSSHHHHHHHHHHS-------C-------G---GGGGGTTTCS
T ss_pred HcCCCHHHHHHHHHhC--------CH---HHHHHHHcCCCHHHHHHHHHhc-------C-------H---HHHHHHHcCC
Confidence 6777778888887753 11 2244446788888887776631 1 1 2344566788
Q ss_pred CHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHH
Q psy10471 195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA 247 (318)
Q Consensus 195 ~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~ 247 (318)
++.||..++..+ . . +.+...+.|++++||..++..
T Consensus 159 d~~VR~~aa~~l-------~--------~---~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 159 DRQVRKLVAKRL-------P--------E---ESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp CHHHHHHHHHHS-------C--------G---GGGGGSTTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcC-------C--------H---HHHHHHHcCCCHHHHHHHHHh
Confidence 888888777641 1 0 122334556777777777654
No 102
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.76 E-value=0.33 Score=46.59 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=73.8
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL 108 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l 108 (318)
+-+..++.++.|++..||..|++.|.++|.. +. ..++...|.++|+.+.+.-+..+-++|..+-+ ++|...+
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~-----i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-~Dpk~tl 136 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN-----LPRVADILTQLLQTDDSAEFNLVNNALLSIFK-MDAKGTL 136 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC-----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh-----hhhHHHHHHHHHhccchHHHHHHHHHHHHHHh-cChHHHH
Confidence 4666688999999999999999999999976 32 44566667788898777777778888888886 8998888
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHhhcC
Q psy10471 109 ATLLNNLKVQERQNRVCTTVAIAIVAETCS 138 (318)
Q Consensus 109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~ 138 (318)
..+++.+...+...|- ++|..|++...
T Consensus 137 ~~lf~~i~~~~e~~Re---r~lkFi~~kl~ 163 (507)
T 3u0r_A 137 GGLFSQILQGEDIVRE---RAIKFLSTKLK 163 (507)
T ss_dssp HHHHHHHHHSCHHHHH---HHHHHHHHHGG
T ss_pred HHHHHHHcccchHHHH---HHHHHHHHHHh
Confidence 8888877655554442 24444554433
No 103
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.52 E-value=0.048 Score=47.62 Aligned_cols=149 Identities=16% Similarity=0.079 Sum_probs=96.2
Q ss_pred HHHHHHhhhchH--HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc
Q psy10471 74 FELLELLKAHKK--AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR 151 (318)
Q Consensus 74 ~~Ll~~L~d~~~--~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~ 151 (318)
..+.++|++++. .++..|..++..++..-.+. |..+. + ...+|.|.+.++
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~-----------------r~~I~-------~----~G~Ip~LV~lL~ 62 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEA-----------------RKRVN-------Q----LRGILKLLQLLK 62 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHH-----------------HHHHH-------H----TTHHHHHHHGGG
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHH-----------------HHHHH-------H----cCCHHHHHHHHc
Confidence 345566676544 67777777777666422221 11111 1 145789999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHh
Q psy10471 152 VPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNY 228 (318)
Q Consensus 152 d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~ 228 (318)
.++.++|..++.++..+... ....+..+ ..-+|.+.++++ ..+..++++++.++-.++..-. .+...+.+-++.
T Consensus 63 s~~~~vq~~Aa~aL~nLa~~-~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~--~k~~i~~~~i~~ 139 (233)
T 3tt9_A 63 VQNEDVQRAVCGALRNLVFE-DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK--LKNLMITEALLT 139 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG--GHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh--hHHHHHhccHHH
Confidence 98899999999999988752 12334444 347899999998 4789999999999988875432 333333333333
Q ss_pred hhhccc-------C---------CChHHHHHHHHHHHHHHH
Q psy10471 229 VWPNIF-------E---------TSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 229 l~~~i~-------d---------~~~~vr~~ii~~i~~i~~ 253 (318)
+...+. + .+++++.++..++..++.
T Consensus 140 Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp HCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence 333321 1 256888888888877755
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.48 E-value=0.0069 Score=61.26 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=57.8
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-HHhhhchHHHHHHHHHHHHHHHhhhCHH--
Q psy10471 29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL-ELLKAHKKAIRRATVNTFGYIAKAIGPH-- 105 (318)
Q Consensus 29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll-~~L~d~~~~vR~~av~~lg~la~~igp~-- 105 (318)
.++|++ ..|++.++..|..|+.+|+.+++.... ........++..++ ..|.|++..||.+|..+|+.|+..-|+.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~-~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKC-RKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHH-HHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 456644 458899999999999999999963221 00111112333333 4578889999999999999999876764
Q ss_pred ------HHHHHHHHhhc
Q psy10471 106 ------DVLATLLNNLK 116 (318)
Q Consensus 106 ------~~l~~Ll~~Lk 116 (318)
.+++.|+..|+
T Consensus 113 ~~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH
Confidence 24555555554
No 105
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.42 E-value=0.0012 Score=58.48 Aligned_cols=141 Identities=12% Similarity=0.051 Sum_probs=96.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q psy10471 34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLN 113 (318)
Q Consensus 34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~ 113 (318)
+..+++|+++.||.+++..++ . +. +..+++|++..||..+...+ .+. .|..
T Consensus 79 l~~L~~D~~~~VR~~aA~~L~-------~--------~~---L~~ll~D~d~~VR~~aA~~l-------~~~----~L~~ 129 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRLP-------R--------EQ---LSALMFDEDREVRITVADRL-------PLE----QLEQ 129 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC-------S--------GG---GGGTTTCSCHHHHHHHHHHS-------CTG----GGGG
T ss_pred HHHHccCcCHHHHHHHHHHCC-------H--------HH---HHHHHcCCCHHHHHHHHHhC-------CHH----HHHH
Confidence 667789999999999997642 1 12 33667888889998888753 221 2344
Q ss_pred hhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc
Q psy10471 114 NLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD 193 (318)
Q Consensus 114 ~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~ 193 (318)
.+++++..+|..++..+. -+.+...++|++..|+..+... ++ . +.+..+++|
T Consensus 130 L~~D~d~~VR~~aA~~l~-----------~~~l~~l~~D~d~~VR~~aa~~-------l~-------~---~ll~~ll~D 181 (244)
T 1lrv_A 130 MAADRDYLVRAYVVQRIP-----------PGRLFRFMRDEDRQVRKLVAKR-------LP-------E---ESLGLMTQD 181 (244)
T ss_dssp GTTCSSHHHHHHHHHHSC-----------GGGGGGTTTCSCHHHHHHHHHH-------SC-------G---GGGGGSTTC
T ss_pred HHcCCCHHHHHHHHHhcC-----------HHHHHHHHcCCCHHHHHHHHHc-------CC-------H---HHHHHHHcC
Confidence 467777788888887421 1234455689999999877775 22 1 345567788
Q ss_pred CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHH
Q psy10471 194 RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVE 249 (318)
Q Consensus 194 ~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~ 249 (318)
.+..||..++..+ .. +.+...+.|++..||..+...++
T Consensus 182 ~d~~VR~aaa~~l---~~---------------~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 182 PEPEVRRIVASRL---RG---------------DDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp SSHHHHHHHHHHC---CG---------------GGGGGGGGCSSHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhC---CH---------------HHHHHHHcCCCHHHHHHHHHcCC
Confidence 8999998888752 10 22345567788889998888888
No 106
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.38 E-value=0.13 Score=43.68 Aligned_cols=107 Identities=9% Similarity=0.026 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC---HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccC
Q psy10471 159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD---LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE 235 (318)
Q Consensus 159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~---~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d 235 (318)
..+++.+..+.+.-.....+|+++++|.+..++-.+. ..+|..|++.++.++...+. .....-.++...+...+.|
T Consensus 64 ~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~-~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 64 KTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSR-SYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCc-cCchHHHHHHHHHHHHHcC
Confidence 3344444444443344688999999999999995432 37999999999999888742 2233334444444444555
Q ss_pred CChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 236 TSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 236 ~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
+..++ .+.-+++..+. ++|++...-.++|-+
T Consensus 143 p~~~l-~t~YGAi~GL~-~lG~~~vr~~llP~l 173 (196)
T 4atg_A 143 PNRSE-DSQYGALYCLS-ILSKNVVNTVIREHA 173 (196)
T ss_dssp TTSCH-HHHHHHHHHHH-HHCHHHHHTHHHHHH
T ss_pred CCCCh-HHHHHHHHHHH-HhHHHHHHHhhhcCH
Confidence 54333 55677777764 889988877777777
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.75 E-value=0.16 Score=51.22 Aligned_cols=186 Identities=12% Similarity=0.042 Sum_probs=102.6
Q ss_pred chhhhHHHHHHHHHHHhccCcCCCh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---h-hhHHHHHHH
Q psy10471 3 SDKNLGIKIVQQIAILMGCAILPHL---KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---A-REWMRICFE 75 (318)
Q Consensus 3 ~~r~~~l~~i~~La~~~g~~~~P~l---~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~-~~~~~il~~ 75 (318)
.+|..|..+|+.|+. +..++.-+ +.+.+++.++|.|++..||.+|+.+|+.|+...|+.+. + ..+++-+..
T Consensus 49 ~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~ 126 (684)
T 4gmo_A 49 KSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEH 126 (684)
T ss_dssp SHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHH
Confidence 578999999999986 43333322 23445567889999999999999999999987764331 1 222222222
Q ss_pred HHHH----hhh--------chHH------HHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccch---hhHHHHH
Q psy10471 76 LLEL----LKA--------HKKA------IRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQER---QNRVCTT 127 (318)
Q Consensus 76 Ll~~----L~d--------~~~~------vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~---~~R~~~~ 127 (318)
+++- ++. .... +-..++..+..+++.-+. ...++.|+..|...+. ..+..++
T Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~ 206 (684)
T 4gmo_A 127 AAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAI 206 (684)
T ss_dssp HHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHH
Confidence 2211 110 0011 112244555556542221 1346667777643332 5777788
Q ss_pred HHHHHHHhhcC----------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc-ccccchh-----hhHHHHHHHH
Q psy10471 128 VAIAIVAETCS----------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE-MGKDYIY-----AVTPLLEDAL 191 (318)
Q Consensus 128 ~ai~~i~~~~~----------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~-~~~~yl~-----~iiP~l~~~l 191 (318)
.++..+++.-. ...++..++..-+.. ...+..++..+..+|..+.. ....|.. .++|.+...+
T Consensus 207 ~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni~~~~~~~d~s~~~~~~~~~~li~~l~~~l 285 (684)
T 4gmo_A 207 SCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNVFTSLQWMDHSPGKDGACDAILIPTLTRAL 285 (684)
T ss_dssp HHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHHHHHHTCBTTBCCGGGCSGGGTHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhHhhhhhhhhcchhhHHHHHHHHHHhhhhhH
Confidence 88877664321 123444444433332 23345566667777766543 3344442 3567776665
No 108
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.68 E-value=0.56 Score=50.38 Aligned_cols=102 Identities=9% Similarity=0.041 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC---HHHHHHHHHHHHHHhhhhcCCCc-hhHHHHHHHhhh
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD---LVHRQTACATIKHMALGVYGFGC-EDALTHLLNYVW 230 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~---~~~R~~a~~~i~~la~~~~~~~~-~~~i~hll~~l~ 230 (318)
.+++..++.++..+++..+..+.+|++++...+..++.... ..-+..+..++..++..+..... ...+..+++-+.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999888999999999999999886433 66666777777666544321111 122444444443
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHcChhh
Q psy10471 231 PNIFETSPHLVQAFMDAVEGLRVALGPVR 259 (318)
Q Consensus 231 ~~i~d~~~~vr~~ii~~i~~i~~alG~~~ 259 (318)
... .+++++. .+..-...+..+|.+.
T Consensus 678 ~~w--~~~~~~~-~~s~~~~f~~~~G~~~ 703 (1204)
T 3a6p_A 678 SIW--LSQDMHR-VLSDVDAFIAYVGTDQ 703 (1204)
T ss_dssp HHH--SCHHHHH-HHHCHHHHHHHHTSSC
T ss_pred HHH--ccHHHHH-hhcCHHHHHHHhCCCC
Confidence 333 4456665 4555567777777543
No 109
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.61 E-value=0.61 Score=49.44 Aligned_cols=175 Identities=8% Similarity=0.018 Sum_probs=105.1
Q ss_pred CChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy10471 25 PHLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGP---EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY 97 (318)
Q Consensus 25 P~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~ 97 (318)
-+-.+++..+.+++++ .++.+|.+|+.++|.++.... +.-..+...++...+.+.+...+...+..+++++|.
T Consensus 387 ~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 387 QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 3456677777777776 468899999999999886432 111123344455545555566556678889999998
Q ss_pred HHhhhCHHHHHHHHHHhhcc-----cch--hhHHHHHHHHHHHHhhcCcccchHHHHHHhc--CCcchHHHHHHHHHHHH
Q psy10471 98 IAKAIGPHDVLATLLNNLKV-----QER--QNRVCTTVAIAIVAETCSPFTVLPALMNEYR--VPELNVQNGVLKALSFL 168 (318)
Q Consensus 98 la~~igp~~~l~~Ll~~Lk~-----~~~--~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~--d~~~~v~~~vl~al~~i 168 (318)
++. | ..++.|++.+.. .+. +.|..++.|+..++. -.|-.+-+.|+..+. ..+.++|.+++..+...
T Consensus 467 ~g~---p-~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~-~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 467 AGQ---P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK-RDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp HTC---G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG-TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cCC---h-hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh-hchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 874 2 256677777642 222 466667766655542 235577888999994 45678887666655421
Q ss_pred HHHHccccccchhhhHHHHHHH-HhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 169 FEYIGEMGKDYIYAVTPLLEDA-LMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 169 ~~~lg~~~~~yl~~iiP~l~~~-l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
. |=.. ++-.+... ..+.+..++....+.|..++..-
T Consensus 542 ~--------P~~~-~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 542 K--------PSVA-LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp C--------CCHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred C--------cCHH-HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 1 1111 11222222 23455666666666665555543
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=93.15 E-value=2.3 Score=42.31 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=107.0
Q ss_pred cCCChHhHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHH
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQ-QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA--HKKAIRRATVNTFGYIA 99 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d--~~~~vR~~av~~lg~la 99 (318)
-.+-..+.++.+..-+++.+ ..=||+|+..|-.++......+. ..=+ ..|++.|++ ....+=+.+++|+..+-
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg-~~~l---~~li~~L~~d~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG-IQAM---EHLIHVLQTDRSDSEIIGYALDTLYNII 90 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH-HHTH---HHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh-hhhH---HHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 45667788888888888766 66799999999999875443321 1212 234455555 33445566788875543
Q ss_pred hhhCHHHHHHHHHHhhcccchhhHHHHHHHHH-HHHhhcC-cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc
Q psy10471 100 KAIGPHDVLATLLNNLKVQERQNRVCTTVAIA-IVAETCS-PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK 177 (318)
Q Consensus 100 ~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~-~i~~~~~-p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~ 177 (318)
..-+..+- .. + ...+ ..-++ ..++.+- ...-++.|++.++..+-.++-..++.+..++.+=+.+..
T Consensus 91 ~~~~~~~~-~~---~---~~~~-----~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q 158 (651)
T 3grl_A 91 SNDEEEEV-EE---N---STRQ-----SEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ 158 (651)
T ss_dssp CCC--------------------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCcccc-cc---c---cccc-----chHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH
Confidence 21111000 00 0 0000 00001 0111111 124567788888888888898999999999877555444
Q ss_pred cch---hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471 178 DYI---YAVTPLLEDALMDRDLVHRQTACATIKHMALGV 213 (318)
Q Consensus 178 ~yl---~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~ 213 (318)
.++ |.=+|.+.+++.+....+|-.+..++..++..-
T Consensus 159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence 444 567899999999999999999999998887654
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.92 E-value=0.9 Score=38.42 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CC-HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch-
Q psy10471 9 IKIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQ-QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK- 84 (318)
Q Consensus 9 l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~- 84 (318)
++++..|..--.-.+.||+.+++|.++..+-. -. ...|+-|++.+++++...+..- +.--.++...+.+.+.|++
T Consensus 67 m~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 67 IALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNR 145 (196)
T ss_dssp HHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCC
Confidence 44444444422226999999999998765432 12 2789999999999998766432 2334567777778887743
Q ss_pred -HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Q psy10471 85 -KAIRRATVNTFGYIAKAIGPHDVLATLLNNLK 116 (318)
Q Consensus 85 -~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk 116 (318)
...+-=|+.++.. +|+..+-..++.+++
T Consensus 146 ~l~t~YGAi~GL~~----lG~~~vr~~llP~l~ 174 (196)
T 4atg_A 146 SEDSQYGALYCLSI----LSKNVVNTVIREHAE 174 (196)
T ss_dssp CHHHHHHHHHHHHH----HCHHHHHTHHHHHHH
T ss_pred ChHHHHHHHHHHHH----hHHHHHHHhhhcCHH
Confidence 3455557777664 566533333445544
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.83 E-value=2.7 Score=44.54 Aligned_cols=173 Identities=14% Similarity=0.123 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC------HHH----HHHHHHHhhcccchhhHHHHHHHHHHHHh
Q psy10471 67 REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG------PHD----VLATLLNNLKVQERQNRVCTTVAIAIVAE 135 (318)
Q Consensus 67 ~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig------p~~----~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~ 135 (318)
++++..+..|++.-+. +++.+|..++=++|.++...- |.+ +.+.|...+...+...+.....|+|.++.
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 4555555544422221 345688999999988876421 222 23333344443333445555666655543
Q ss_pred hcCcccchHHHHHHhcC-----Cc--chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh--cCCHHHHHHHHHHH
Q psy10471 136 TCSPFTVLPALMNEYRV-----PE--LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM--DRDLVHRQTACATI 206 (318)
Q Consensus 136 ~~~p~~vip~L~~~~~d-----~~--~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~--~~~~~~R~~a~~~i 206 (318)
| ..++.++..+.. .+ ..++.+++.|+..+.+ .+=..+-+.+..++. ..++.+|..|..++
T Consensus 470 ---p-~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~-------~~p~~v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 470 ---P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK-------RDPRKVQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp ---G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG-------TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ---h-hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh-------hchHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 3 356666665432 12 3466677777665542 122346677777774 55689999999888
Q ss_pred HHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh
Q psy10471 207 KHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR 259 (318)
Q Consensus 207 ~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~ 259 (318)
-... .....++++...+. .|++.+|+..+...|..++..-.+..
T Consensus 539 m~t~------P~~~~l~~ia~~l~---~E~~~QV~sfv~S~l~sla~s~~P~~ 582 (1056)
T 1lsh_A 539 FESK------PSVALVSMVAVRLR---REPNLQVASFVYSQMRSLSRSSNPEF 582 (1056)
T ss_dssp HHTC------CCHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHC------cCHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHhcCCcch
Confidence 4432 33356677777764 45899999999999999999887744
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.37 E-value=8.1 Score=37.09 Aligned_cols=178 Identities=14% Similarity=0.067 Sum_probs=106.9
Q ss_pred cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102 (318)
Q Consensus 23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i 102 (318)
+..+...-.. |+...+- ++...+-|+.-|+.+....++.- ..-+..++++..|....||..|++.+..+++.-
T Consensus 24 ~~~~~~~y~~-Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~ 96 (507)
T 3u0r_A 24 VGQHKDAYQV-ILDGVKG-GTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATGE 96 (507)
T ss_dssp GGGGHHHHHH-HHHGGGS-CHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTT
T ss_pred ccccHHHHHH-HHHhcCC-CHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhh
Confidence 4445554433 3333333 68889999999999888655422 223445667778888889999999999999872
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc-cccch-
Q psy10471 103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM-GKDYI- 180 (318)
Q Consensus 103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~-~~~yl- 180 (318)
-...+.+.|...|..++...+..|-.++..+... .|...+.++.+.....+..+|.-+++-|..-+..++.. ...-.
T Consensus 97 ~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E 175 (507)
T 3u0r_A 97 NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM-DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175 (507)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHH
T ss_pred hhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHH
Confidence 2346778888888877777777777777654322 22334444555444456677766555444433333321 11111
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy10471 181 YAVTPLLEDALMDRDLVHRQTACATIKH 208 (318)
Q Consensus 181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~ 208 (318)
..|+-.+..++.+-+..-.......++.
T Consensus 176 ~~i~~~ikK~L~DVT~~EF~L~m~lL~~ 203 (507)
T 3u0r_A 176 ELILTESKKVLEDVTGEEFVLFMKILSG 203 (507)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2255566666666665554545555533
No 114
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=91.12 E-value=8.6 Score=34.87 Aligned_cols=142 Identities=10% Similarity=0.045 Sum_probs=90.5
Q ss_pred HHHHhcCCcchHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHH----h---cCCHHHHHHHHHHHHHHhhhhcCCC
Q psy10471 146 LMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL----M---DRDLVHRQTACATIKHMALGVYGFG 217 (318)
Q Consensus 146 L~~~~~d~~~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l----~---~~~~~~R~~a~~~i~~la~~~~~~~ 217 (318)
.+..|+...+..| ..++..++.++..+|..+.++++.|+..+...- + +.-|.||.....++..+...|-..=
T Consensus 78 VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al 157 (321)
T 1w9c_A 78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF 157 (321)
T ss_dssp HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHH
Confidence 4456666666666 679999999999999999998887766554333 2 2349999999999999887663110
Q ss_pred ---chhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc------ChhhHHHhHHHHhcc--------ccccchHHHH
Q psy10471 218 ---CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL------GPVRILQYVLQGLFH--------PARKVRDVYW 280 (318)
Q Consensus 218 ---~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al------G~~~~~~~vl~~l~~--------~a~~~r~~~w 280 (318)
..+.+.-+..-+.=.++++.+++-.+-++.+-.+-..+ ..+++..|.++.+.| +++..-..+.
T Consensus 158 ~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~ 237 (321)
T 1w9c_A 158 LAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHA 237 (321)
T ss_dssp HHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHH
Confidence 12333334444444577888887766555444333333 335688888888743 3343444555
Q ss_pred HHHHHhh
Q psy10471 281 KIYNSLY 287 (318)
Q Consensus 281 ~i~~~~~ 287 (318)
.++..+.
T Consensus 238 ~iL~~lf 244 (321)
T 1w9c_A 238 SILAYMF 244 (321)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.99 E-value=3.6 Score=36.20 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=51.2
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471 177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR 252 (318)
Q Consensus 177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~ 252 (318)
..++++++|.+..+..+++..+|++.+..++..... +.+.....++-+...+.|+++.|.+.++.+...+-
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-----k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-----KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 568899999999988888999999999999877532 22333333333333345688999998888777664
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.87 E-value=15 Score=32.09 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84 (318)
Q Consensus 5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~ 84 (318)
|-..|+-+.+|+... + --.++++++-++++..|++..+|+-.+.-|++.+..- ..-....+..|..+++|+.
T Consensus 32 kl~~L~qa~el~~~~--d-p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 32 KCELLAKVQETVLGS--C-AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHTTT--T-GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHcc--C-HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCC
Confidence 445555555555532 1 2367899999999888989999999999999988542 2233344555667778877
Q ss_pred HHHHHHHHHHHHHHHhhh------CHH-----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCC
Q psy10471 85 KAIRRATVNTFGYIAKAI------GPH-----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP 153 (318)
Q Consensus 85 ~~vR~~av~~lg~la~~i------gp~-----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~ 153 (318)
+.|-+.++.+++.+=... .|. +-....|..+|+ ..++.+...
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~---------------------------~Il~~~~s~ 156 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKA---------------------------QILDMIDNE 156 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH---------------------------HHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH---------------------------HHHHHHccC
Confidence 888888888876643211 000 112222223332 155566667
Q ss_pred cchHHHHHHHHHHHHHHHH
Q psy10471 154 ELNVQNGVLKALSFLFEYI 172 (318)
Q Consensus 154 ~~~v~~~vl~al~~i~~~l 172 (318)
+..++..++|-+..+.-..
T Consensus 157 n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 157 NDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHhh
Confidence 7888988888888877543
No 117
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=84.19 E-value=2.6 Score=44.32 Aligned_cols=164 Identities=13% Similarity=0.025 Sum_probs=90.1
Q ss_pred CCChHhHHHHHHh----hcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch-HHHHHHHHHHHHH
Q psy10471 24 LPHLKNLVEIIEH----GLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK-KAIRRATVNTFGY 97 (318)
Q Consensus 24 ~P~l~~l~~~l~~----~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~-~~vR~~av~~lg~ 97 (318)
.|+.++.++.++. ..+ +.++ .|.+++..+--+.-.---.++..+-..|...++++|.|++ ..||..|-.+|+-
T Consensus 792 ~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsg 870 (997)
T 1vsy_5 792 MPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSD 870 (997)
T ss_dssp SCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4555555555444 444 3568 8888887766555432223334555677777888899999 9999999999988
Q ss_pred HHhhhC-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc
Q psy10471 98 IAKAIG-PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG 176 (318)
Q Consensus 98 la~~ig-p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~ 176 (318)
+.. ++ +......++..++..-.+.+ ..+.+-+.. ..+...+.+.+-+++.+..+..-.+
T Consensus 871 ll~-c~~~~~~~~~li~~f~~~~~~~~------------------~~~~~~~~~-~~~~~~rH~aVLgL~AlV~a~Py~v 930 (997)
T 1vsy_5 871 IVH-NWKEEQPLLSLIERFAKGLDVNK------------------YTSKERQKL-SKTDIKIHGNVLGLGAIISAFPYVF 930 (997)
T ss_dssp HHH-SCCSHHHHHHHHHHHTTSSTTTS------------------SCHHHHHHH-HHHCHHHHHHHHHHHHHHTTCSCCS
T ss_pred HHH-cCCchhhHHHHHHHHHHHHhhcc------------------ccccccccc-chHHHHHHHHHHHHHHHHhhCCCCC
Confidence 875 45 63223344444432110000 000000000 0001233556666777776654444
Q ss_pred --ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471 177 --KDYIYAVTPLLEDALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 177 --~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~l 209 (318)
.+|+|+++..+.+...++ ..++.++-.+++.-
T Consensus 931 P~P~w~P~~l~~La~~~~~~-~~i~~tvk~tlseF 964 (997)
T 1vsy_5 931 PLPPWIPKNLSNLSSWARTS-GMTGNAAKNTISEF 964 (997)
T ss_dssp SCCTHHHHHHHHHHTTSSSC-SSHHHHTHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Confidence 456666665555555553 34777666666543
No 118
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=83.88 E-value=8.1 Score=38.49 Aligned_cols=72 Identities=8% Similarity=-0.017 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH---HHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT---HLLNYVWPNIFETSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~---hll~~l~~~i~d~~~~vr~~ii~~i~~i~~ 253 (318)
+.-++.+.+++...+..+|-.+.++++.+...-. ....+.+. .=.+.++..+.|....+|..++..+..++.
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~-~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG-PQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc-HHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999988876532 11122222 123455677777888889888888887765
No 119
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=83.22 E-value=43 Score=34.18 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=48.3
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP---EYVSAREWMRICFELLELLKA---HKKAIRRATVNTFGYIA 99 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll~~L~d---~~~~vR~~av~~lg~la 99 (318)
.+.-++|.+...+-..+..+...+..++..+|.-.+ +.+ +++++..+-..|.+ ....--.++++++..++
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV----lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI----YDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH----HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee----hHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 456677777778888899999999999999999666 443 33344444344444 22333455788887766
Q ss_pred hhh
Q psy10471 100 KAI 102 (318)
Q Consensus 100 ~~i 102 (318)
..+
T Consensus 412 r~l 414 (799)
T 1vsy_4 412 RFI 414 (799)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=81.16 E-value=11 Score=35.03 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=39.3
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHH
Q psy10471 178 DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL 251 (318)
Q Consensus 178 ~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i 251 (318)
..+++++|.+..+-.+.+..+|++.++.|+..... +.+.+.+.++.+...+.|+++.|.+.++.+...+
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45566677777776677777777777776655432 1222333333333333456666666666666554
No 121
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=73.44 E-value=26 Score=27.40 Aligned_cols=77 Identities=5% Similarity=-0.071 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh
Q psy10471 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV 258 (318)
Q Consensus 181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~ 258 (318)
...+-.+.+-+.++++++.-.+..++..++.+|+.. +...+ ..+++.+...+...++.|+..+++.+..-+.+.+.+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 356677888888999999999999999998887311 11000 112222111112367899999999999888877654
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.38 E-value=20 Score=28.17 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=52.4
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~ 214 (318)
.++-++.+.++..+++++--++..+..+.+.-|..|-.-+ ..++.-+..++...++.+|+-...++..-+...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 4455566666666677777778888888888887554333 3455556666667789999999999988877665
No 123
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=69.10 E-value=73 Score=29.51 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=71.1
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh-----cC
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV-----YG 215 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~-----~~ 215 (318)
.++|.++.--.|++.++|+.+..-+...|+. -..+++.+++.+..++++.++.+.+.++++.+.+=+.+ +.
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~ 138 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKS 138 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566666666677788888887777777752 24567888888888888888777766666555442111 11
Q ss_pred CC-------chhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 216 FG-------CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 216 ~~-------~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
.+ ..+.+..+-..++...-..+..+|..++--++.+....
T Consensus 139 ~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 139 RVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 11 13455555555555433367788888888888877544
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=68.35 E-value=33 Score=27.67 Aligned_cols=88 Identities=9% Similarity=0.145 Sum_probs=60.8
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHh
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~ 100 (318)
...+.+..|...+++.+|.|+.-|+..|-.+..++|+.+. -++|+.-+..++ +. .++.||.-++..+-.-+.
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~---~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI---KNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHH
Confidence 3457778888889999999999999999999999995332 266666655444 44 456788888887777666
Q ss_pred hhCH---HHHHHHHHHhhc
Q psy10471 101 AIGP---HDVLATLLNNLK 116 (318)
Q Consensus 101 ~igp---~~~l~~Ll~~Lk 116 (318)
..+. +..+..+-+.||
T Consensus 126 ~f~~~~~l~~i~~~Y~~Lk 144 (163)
T 1x5b_A 126 EFQKDPQFSLISATIKSMK 144 (163)
T ss_dssp HTTTCSTTHHHHHHHHHHH
T ss_pred HhcCCcccHHHHHHHHHHH
Confidence 5542 233444444444
No 125
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=67.42 E-value=71 Score=28.78 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHHHHHHHccccccchhhhHHHHHH-HH--------hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH-
Q psy10471 155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED-AL--------MDRDLVHRQTACATIKHMALGVYGFGCEDALTH- 224 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~-~l--------~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h- 224 (318)
..+++.+++.+....+...+ .+.-...++|.+.+ ++ ..+++.+-...+..+.++...+. ......+.+
T Consensus 43 R~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~-~~vp~Il~~V 120 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHIT-AEIPQIFDAV 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGG-GGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhh-hhHHHHHHHH
Confidence 35678888888887754322 11112444555544 33 23456776777777777655443 111122222
Q ss_pred ---HHHhhhhcccCCChHHHHHHHHHHHHHHHH-------cChhhH---HHhHHHHhccccccchHHHHHHHHH
Q psy10471 225 ---LLNYVWPNIFETSPHLVQAFMDAVEGLRVA-------LGPVRI---LQYVLQGLFHPARKVRDVYWKIYNS 285 (318)
Q Consensus 225 ---ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a-------lG~~~~---~~~vl~~l~~~a~~~r~~~w~i~~~ 285 (318)
-+.++ ..-++++|+.|......+.+++.. +.++.| ...++=++-|+.+.+-|.=++++..
T Consensus 121 Fe~TL~MI-~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ 193 (321)
T 1w9c_A 121 FECTLNMI-NKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193 (321)
T ss_dssp HHHHHHHH-SSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 22332 333468999999999999998854 344433 3333333458888776666665533
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=67.27 E-value=20 Score=32.70 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=60.4
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP------EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~------~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
+-+.....+-.++..++--.|+.+++.||++--.-. -|++-++.+.++. ++|+|+.+.++-+|.+.|-...
T Consensus 206 nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M---~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 206 HYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMM---NLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp THHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHH---HHTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHH---HHhcCchhchhhhhhhheeeee
Confidence 445566667778888888889999999999875322 3555577777755 6669999999999999986655
Q ss_pred hh-hCHHHHHHHHHH
Q psy10471 100 KA-IGPHDVLATLLN 113 (318)
Q Consensus 100 ~~-igp~~~l~~Ll~ 113 (318)
+. --|..+...|.+
T Consensus 283 ANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 283 ANPNKTQPILDILLK 297 (341)
T ss_dssp HCSSCCHHHHHHHHH
T ss_pred eCCCCChHHHHHHHH
Confidence 32 234445444444
No 127
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=62.76 E-value=6.7 Score=37.62 Aligned_cols=71 Identities=10% Similarity=0.150 Sum_probs=49.0
Q ss_pred hHHHHHHhhcCC----------CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471 29 NLVEIIEHGLVD----------EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI 98 (318)
Q Consensus 29 ~l~~~l~~~l~d----------~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~l 98 (318)
+++..+..+|+. .+|.+-..||.=||+++...|.--..-+=...=..+++++..+++.||.+|+.+++.+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 567777777752 3588899999999999987664211111111112356777888999999999999876
Q ss_pred H
Q psy10471 99 A 99 (318)
Q Consensus 99 a 99 (318)
.
T Consensus 475 m 475 (480)
T 1ho8_A 475 I 475 (480)
T ss_dssp H
T ss_pred H
Confidence 4
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=61.06 E-value=58 Score=26.14 Aligned_cols=73 Identities=10% Similarity=-0.011 Sum_probs=48.8
Q ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhc
Q psy10471 142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD-RDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~-~~~~~R~~a~~~i~~la~~~~ 214 (318)
++-++.+.++..++.++-.++..+..+++.-|..|-.-+ ..++..+.+++.. .++.+|+-+..++..-+...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 333455556566677777788888888888886554333 2355555555553 568899988888887776654
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.59 E-value=53 Score=27.83 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=52.5
Q ss_pred cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhc
Q psy10471 139 PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 139 p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~ 214 (318)
|..++-++.+.++..+++++..++..+..+.+.-|..|-.-+ ..++..+..++. ..+..+|+-+..++..-+...+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 345666677777777788888888899999998887543333 234445555554 3457888888888877766554
No 130
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=59.95 E-value=41 Score=26.46 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=46.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy10471 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMA 210 (318)
Q Consensus 145 ~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la 210 (318)
.+-+.++.+.++.+-..+=.++.|++..|..+..++ +.+.+.|.++....+...|.....++..=.
T Consensus 47 ~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 47 AIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 344444445567777888888899988886655555 457778888887788888877777765543
No 131
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=59.29 E-value=59 Score=27.23 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=22.6
Q ss_pred HhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHH
Q psy10471 79 LLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI 130 (318)
Q Consensus 79 ~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai 130 (318)
-.++++.++||.|+.++-.-.+...|..++..+-+.+.+++.=+|.+++-++
T Consensus 132 W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~L 183 (220)
T 2b6c_A 132 FYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSL 183 (220)
T ss_dssp HTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3355666666666664422222233333333333333444333444444433
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=56.01 E-value=74 Score=25.16 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchh-HHHHHHHhhhhccc------CCC
Q psy10471 165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED-ALTHLLNYVWPNIF------ETS 237 (318)
Q Consensus 165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~-~i~hll~~l~~~i~------d~~ 237 (318)
+..+++.+...- .--...+-.+.+-+.++++.+...+..++..++.+|+..-+.+ .-..+++.+...+. ..+
T Consensus 32 ileicD~I~~~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~ 110 (149)
T 3g2s_A 32 INGFCEQLNEDF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS 110 (149)
T ss_dssp HHHHHHHGGGSS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC
T ss_pred HHHHHHHHHCCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC
Confidence 345555555432 1223466788888889999999999999999998884111110 00112333222222 256
Q ss_pred hHHHHHHHHHHHHHHHHcCh
Q psy10471 238 PHLVQAFMDAVEGLRVALGP 257 (318)
Q Consensus 238 ~~vr~~ii~~i~~i~~alG~ 257 (318)
+.|+..+++.+..-+.+++.
T Consensus 111 ~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 111 EKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999998865
No 133
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=55.32 E-value=1.1e+02 Score=26.83 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHh---hhCHH---------HHHHHHHHhhc---c----cchhhHHHHHHHH-HHHHhh---cC---
Q psy10471 85 KAIRRATVNTFGYIAK---AIGPH---------DVLATLLNNLK---V----QERQNRVCTTVAI-AIVAET---CS--- 138 (318)
Q Consensus 85 ~~vR~~av~~lg~la~---~igp~---------~~l~~Ll~~Lk---~----~~~~~R~~~~~ai-~~i~~~---~~--- 138 (318)
+..|..|+..++.-.+ .++|. .++...+...- . ....+|+|.+.++ -.+|.. ..
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl 94 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFL 94 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHH
Confidence 4458878877766443 23332 23333333221 1 1126899998888 345421 11
Q ss_pred ----cccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471 139 ----PFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHM 209 (318)
Q Consensus 139 ----p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~l 209 (318)
|.-+.|.|-...++- -..+|-..++.++.++|.=..+...|+ .+++|...+.++.++..-|.-|.-.+..+
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 333444432232332 235677888889998887555677888 56999999999999877776666666554
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=53.99 E-value=32 Score=27.33 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=54.5
Q ss_pred ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc------CCHHHHHHHHHHHHHHhh
Q psy10471 140 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD------RDLVHRQTACATIKHMAL 211 (318)
Q Consensus 140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~------~~~~~R~~a~~~i~~la~ 211 (318)
..++-++.+.++..++.++-.++..+..+.+.-|..|-.-+ ..++.-+.+++.+ .+..+|+-...++..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 35555677777777788888888899999998887654333 3456667777753 468999999999888776
Q ss_pred hhc
Q psy10471 212 GVY 214 (318)
Q Consensus 212 ~~~ 214 (318)
..+
T Consensus 127 ~f~ 129 (149)
T 3g2s_A 127 GLP 129 (149)
T ss_dssp HCT
T ss_pred HhC
Confidence 553
No 135
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=52.46 E-value=39 Score=28.41 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=57.5
Q ss_pred HHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHH
Q psy10471 12 VQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRAT 91 (318)
Q Consensus 12 i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~a 91 (318)
.+.+|.+.|.-+.-+-..+.+.+.+-.+|++.-+||+|+..+ +.- .....+....+++. ..+.|+..-||.+.
T Consensus 107 ~D~~a~~~~~~~~~~~~~~~~~i~~W~~s~~~w~rR~ai~~~--l~~--~~~~~~~~~~~i~~---~~~~d~~~yV~kav 179 (220)
T 2b6c_A 107 VDAWRKFFGSWVALHLTELPTIFALFYGAENFWNRRVALNLQ--LML--KEKTNQDLLKKAII---YDRTTEEFFIQKAI 179 (220)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHHTTCSSHHHHHHHHHTT--TTC--GGGCCHHHHHHHHH---HTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHcCCCHHHHHHHHHHH--HHH--HHCCCHHHHHHHHH---HhCCChHHHHHHHH
Confidence 344443344433344455777788888999999999988633 311 00111333333333 35577888899999
Q ss_pred HHHHHHHHhhhCHHHHHHHH
Q psy10471 92 VNTFGYIAKAIGPHDVLATL 111 (318)
Q Consensus 92 v~~lg~la~~igp~~~l~~L 111 (318)
-+.|-.+++ -.|..+..-+
T Consensus 180 gW~Lr~~~k-~~~~~v~~fl 198 (220)
T 2b6c_A 180 GWSLRQYSK-TNPQWVEELM 198 (220)
T ss_dssp HHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHh-hCHHHHHHHH
Confidence 999999997 4777555554
No 136
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=51.21 E-value=2.1e+02 Score=29.05 Aligned_cols=84 Identities=6% Similarity=-0.035 Sum_probs=42.8
Q ss_pred chhHHHHHHHhhhhccc-CCChHHHHHHHHHHHHHHHHcChhhHHHhHHH-------Hhcccccc-chHHHHHHHHHhhc
Q psy10471 218 CEDALTHLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ-------GLFHPARK-VRDVYWKIYNSLYI 288 (318)
Q Consensus 218 ~~~~i~hll~~l~~~i~-d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~-------~l~~~a~~-~r~~~w~i~~~~~~ 288 (318)
+++-+..++.+++..+. ..+..+-..+-.++..+..++.++.|...+-. -.+|.+.+ +=+.-|=+|+++--
T Consensus 513 f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~ 592 (799)
T 1vsy_4 513 FQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVR 592 (799)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444332 23445666788888888888888654443333 33444432 11222222444432
Q ss_pred cccccccccCCCC
Q psy10471 289 GGQDALISAYPRI 301 (318)
Q Consensus 289 ~~~~~~~p~~p~~ 301 (318)
.+...+..|+|.+
T Consensus 593 ~~P~~~~~~~p~l 605 (799)
T 1vsy_4 593 RNNGLSKELVRTL 605 (799)
T ss_dssp HCGGGHHHHHHHH
T ss_pred hCHHHHHHHHHHH
Confidence 2334666677755
No 137
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=50.34 E-value=16 Score=38.47 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471 44 KVQENCIDLVGRIADRGPEYVSAREWMRIC-FELLELLKAHKKAIRRATVNTFGYIA 99 (318)
Q Consensus 44 ~vR~aa~~~LG~la~~~~~~i~~~~~~~il-~~Ll~~L~d~~~~vR~~av~~lg~la 99 (318)
..|.+|+..||-+..+.++.+.++.|+|-+ ..|-+...++.+ ++..+=+|++..=
T Consensus 910 ~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFk 965 (997)
T 1vsy_5 910 IKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFK 965 (997)
T ss_dssp HHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHH
Confidence 568999999999999999888558888754 445455666444 8888877777633
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.15 E-value=77 Score=26.56 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=48.2
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhc
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~ 214 (318)
.++-++.+.++..++.++.-++..+..+++.-|..|-..+ ..++..+..++. ..+..+|+.+..++..-+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4444566666666677777788888888888776543333 224444455554 4568899888888877776654
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.15 E-value=33 Score=27.18 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=53.6
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc------CCHHHHHHHHHHHHHHhhh
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD------RDLVHRQTACATIKHMALG 212 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~------~~~~~R~~a~~~i~~la~~ 212 (318)
.++-++.+.++..++.++-.++..+..+.+.-|..|-..+ ..++..+.+++.. .+..+|+-...++..-+..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444566677777788888889999999999887664444 3466666666653 3689999988888877766
Q ss_pred hc
Q psy10471 213 VY 214 (318)
Q Consensus 213 ~~ 214 (318)
.+
T Consensus 118 f~ 119 (148)
T 1mhq_A 118 FP 119 (148)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 140
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=47.46 E-value=49 Score=28.03 Aligned_cols=86 Identities=9% Similarity=-0.048 Sum_probs=44.2
Q ss_pred CCHHHHHH-HHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccc
Q psy10471 41 EQQKVQEN-CIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE 119 (318)
Q Consensus 41 ~~~~vR~a-a~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~ 119 (318)
.++.+-.. |-+.+|.+....++ ...+.+. +-.++++.++||.|+..+-.-....+|..+...+...+++++
T Consensus 108 ~nWd~~D~~a~~~~g~~~~~~p~-----~~~~~l~---~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~ 179 (232)
T 3jxy_A 108 SWWDSVDSIVPTFLGDIFLKHPE-----LISAYIP---KWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKE 179 (232)
T ss_dssp CCHHHHHHHTTTHHHHHHHHCGG-----GGGGTHH---HHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCC
T ss_pred CChHHHHHhhHHHHHHHHHHCHH-----HHHHHHH---HHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHH
Confidence 45555433 34566766654322 1223333 344778888888888764222223444444444445555555
Q ss_pred hhhHHHHHHHHHHHH
Q psy10471 120 RQNRVCTTVAIAIVA 134 (318)
Q Consensus 120 ~~~R~~~~~ai~~i~ 134 (318)
.=+|-+++-++..++
T Consensus 180 ~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 180 FFIQKAIGWVLREYA 194 (232)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555544443
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.11 E-value=1.1e+02 Score=24.01 Aligned_cols=75 Identities=9% Similarity=-0.040 Sum_probs=52.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchh--HHHHHHHhhhhcccC------CChHHHHHHHHHHHHHHH
Q psy10471 182 AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED--ALTHLLNYVWPNIFE------TSPHLVQAFMDAVEGLRV 253 (318)
Q Consensus 182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~--~i~hll~~l~~~i~d------~~~~vr~~ii~~i~~i~~ 253 (318)
..+-.+.+-++++++.+...+..++..++.+|+.. +.. .-..+++.+...+.. .+++|+..+++.+..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45566778888999999999999999999888411 111 012344443332321 468999999999999988
Q ss_pred HcCh
Q psy10471 254 ALGP 257 (318)
Q Consensus 254 alG~ 257 (318)
+++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8754
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.53 E-value=79 Score=25.56 Aligned_cols=74 Identities=5% Similarity=0.076 Sum_probs=54.8
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh------chHHHHHHHHHHHH
Q psy10471 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA------HKKAIRRATVNTFG 96 (318)
Q Consensus 27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d------~~~~vR~~av~~lg 96 (318)
-++.+..|...+++.+|.|+.-|+..|-.+..++|+.+. -++|+.-+. .+++. ....||.-++..+.
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~---kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI---KVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH---HHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH---HHhccccCCCCCCHHHHHHHHHHHH
Confidence 356777888899999999999999999999999985321 255555544 44442 34678988888887
Q ss_pred HHHhhhC
Q psy10471 97 YIAKAIG 103 (318)
Q Consensus 97 ~la~~ig 103 (318)
.-+...+
T Consensus 125 ~W~~~f~ 131 (171)
T 1juq_A 125 SWTMALP 131 (171)
T ss_dssp HHHHHCT
T ss_pred HHHHHcC
Confidence 7776654
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.70 E-value=95 Score=25.96 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=54.1
Q ss_pred ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC----ChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHh
Q psy10471 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV----SAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAK 100 (318)
Q Consensus 26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i----~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~ 100 (318)
..++.+..|...+++.+|.|+.-|+..|..+..++|+.+ .-++++..+..+ +++ ....||.-++..+-.-+.
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l---~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSF---LESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999999999988522 125566655433 354 446688777777666665
Q ss_pred hhC
Q psy10471 101 AIG 103 (318)
Q Consensus 101 ~ig 103 (318)
...
T Consensus 116 ~f~ 118 (220)
T 1dvp_A 116 AFR 118 (220)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=42.54 E-value=55 Score=26.53 Aligned_cols=73 Identities=8% Similarity=0.042 Sum_probs=51.5
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc------CCHHHHHHHHHHHHHHhhh
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD------RDLVHRQTACATIKHMALG 212 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~------~~~~~R~~a~~~i~~la~~ 212 (318)
.++-++.+.++..++.++-.++..+..+++.-|..|-.-+ ..++.-+.+++.. .+..+|+-+..++..-+..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444566677777788888888889999998886654333 3456666777652 3578898888888777665
Q ss_pred h
Q psy10471 213 V 213 (318)
Q Consensus 213 ~ 213 (318)
.
T Consensus 130 f 130 (171)
T 1juq_A 130 L 130 (171)
T ss_dssp C
T ss_pred c
Confidence 5
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.67 E-value=1.8e+02 Score=24.49 Aligned_cols=75 Identities=5% Similarity=0.022 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-----CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-----GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-----~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al 255 (318)
...+-.+.+-+++.++++...+..+++.++.+++.. ...+-+.-+... +.. ..+++|+..+++.+..-+.+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l-~~~--~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDL-LKR--QVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHH-HHH--CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHH-hcc--CCCHHHHHHHHHHHHHHHHHh
Confidence 456778888889999999999999999999988421 111222112122 221 356789999999999998888
Q ss_pred Chh
Q psy10471 256 GPV 258 (318)
Q Consensus 256 G~~ 258 (318)
..+
T Consensus 121 ~~~ 123 (226)
T 3zyq_A 121 RNE 123 (226)
T ss_dssp TTC
T ss_pred CCC
Confidence 553
No 146
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=35.87 E-value=2.5e+02 Score=27.45 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=60.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH
Q psy10471 32 EIIEHGLVDEQQKVQENCIDLVGRIADRGP------EYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP 104 (318)
Q Consensus 32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~------~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp 104 (318)
+.+..+|++.++.+..-++..+..+..+.. +..+.+.+.+++..+..++.- +....|..|.+.++..-...++
T Consensus 320 ~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~ 399 (596)
T 4f52_E 320 GHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDS 399 (596)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCH
T ss_pred HHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCCh
Confidence 345677888888888888888887765433 122246778888877776666 7888999999999998888877
Q ss_pred H---HHHHHHHHhh
Q psy10471 105 H---DVLATLLNNL 115 (318)
Q Consensus 105 ~---~~l~~Ll~~L 115 (318)
. .++..|+++-
T Consensus 400 e~R~~iL~~LL~~~ 413 (596)
T 4f52_E 400 QGKYTLFRCLLNTS 413 (596)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 4 4555555543
No 147
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.33 E-value=1.7e+02 Score=23.06 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=44.4
Q ss_pred hHHHHHHhc-CCcchHHHHHHHHHHHHHHHHccccccch--hhhHHH-HHHHHh---cCCHHHHHHHHHHHHHHhhhhc
Q psy10471 143 LPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPL-LEDALM---DRDLVHRQTACATIKHMALGVY 214 (318)
Q Consensus 143 ip~L~~~~~-d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~-l~~~l~---~~~~~~R~~a~~~i~~la~~~~ 214 (318)
+-++.+.++ .+++.++-.++..+..+.+.-|..|-.-+ ..++.- +.+++. +.+..+|+-+..++..-+...+
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 334555554 34566667777888888888776554333 224443 445552 2346889888888877776654
No 148
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.20 E-value=1.6e+02 Score=23.23 Aligned_cols=76 Identities=8% Similarity=0.124 Sum_probs=52.8
Q ss_pred ChHhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh---chHHHHHHHHHHHHH
Q psy10471 26 HLKNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA---HKKAIRRATVNTFGY 97 (318)
Q Consensus 26 ~l~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d---~~~~vR~~av~~lg~ 97 (318)
...+.+..+...++ +.++.|+.-|+..|-.+..++|+.+. -++++.-+ |..+++. +...||.-++..+..
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~--Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV--LVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH--THHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH--HHHHhccCCCCcHHHHHHHHHHHHH
Confidence 34677778888887 58899999999999999999995332 24444431 2344432 345788888888877
Q ss_pred HHhhhC
Q psy10471 98 IAKAIG 103 (318)
Q Consensus 98 la~~ig 103 (318)
-+...+
T Consensus 128 W~~~f~ 133 (157)
T 1elk_A 128 WADAFR 133 (157)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 776554
No 149
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=30.31 E-value=3.3e+02 Score=25.19 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=37.3
Q ss_pred hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471 219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268 (318)
Q Consensus 219 ~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l 268 (318)
+..+..++.+ ||. +++.=....++-++.+...++++.|.+...|.+
T Consensus 250 ~~vi~~LLk~-WP~---tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf 295 (403)
T 3fga_B 250 EPVVMALLKY-WPK---THSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 295 (403)
T ss_dssp HHHHHHHHHT-CCS---SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCC---CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3566667777 898 778788889999999999999988887777666
No 150
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=28.59 E-value=2.5e+02 Score=25.59 Aligned_cols=103 Identities=13% Similarity=0.000 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHHHHH-ccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHHh----
Q psy10471 155 LNVQNGVLKALSFLFEYI-GEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG-CEDALTHLLNY---- 228 (318)
Q Consensus 155 ~~v~~~vl~al~~i~~~l-g~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~~---- 228 (318)
...+..+++|+..+..+- |....---+..+..+...+....+.+|.++..++..++..-.+.| ++.++..+-++
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~ 213 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 213 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhC
Confidence 355677777777665431 221100014466777777778888999999999988877653233 55433333222
Q ss_pred -------hhhcccC-CChHHHHHHHHHHHHHHHHcCh
Q psy10471 229 -------VWPNIFE-TSPHLVQAFMDAVEGLRVALGP 257 (318)
Q Consensus 229 -------l~~~i~d-~~~~vr~~ii~~i~~i~~alG~ 257 (318)
++..+.. .+.+++.+.+..|.++......
T Consensus 214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 214 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence 2344443 4667888888888888776543
No 151
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.46 E-value=1.4e+02 Score=23.36 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHHHHHHHhccCcCC--ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC
Q psy10471 11 IVQQIAILMGCAILP--HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE 62 (318)
Q Consensus 11 ~i~~La~~~g~~~~P--~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~ 62 (318)
.+.|||...-. .+ ...++|..|...|++.++.|..=|++.|-.|+..+.+
T Consensus 31 lm~EIA~~T~~--s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 31 KLEEICDLLRS--SHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp HHHHHHHHHHH--SCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHHh--cchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH
Confidence 45666663211 12 2479999999999999999999999999999976654
No 152
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.61 E-value=1.5e+02 Score=23.62 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=41.2
Q ss_pred CChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82 (318)
Q Consensus 25 P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d 82 (318)
.|.+.++..++...=|.++..|+.+...|..+.. ..++..++..=+..+++.+.|
T Consensus 40 ~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~---~~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 40 EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG---TVMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp GGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT---TTBCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhChh
Confidence 3677788888777778889999999999999843 455566666666666666666
No 153
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=25.54 E-value=2.4e+02 Score=23.63 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=45.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHH----HHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471 30 LVEIIEHGLVDEQQKVQENCID----LVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA 101 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~----~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ 101 (318)
..+.+.+-..|++.-+|++|+. .++. ...-.++-.++..++..+-..+.++..-||.+.-+.|..+++.
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 3444556668999999999998 4444 1111112233444444333577888889999999999888863
No 154
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=23.10 E-value=2.6e+02 Score=23.38 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHH-HccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHHh-----
Q psy10471 156 NVQNGVLKALSFLFEY-IGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG-CEDALTHLLNY----- 228 (318)
Q Consensus 156 ~v~~~vl~al~~i~~~-lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~~----- 228 (318)
..+..+++|+..+..+ .|....---+..+..+...+..+.+..|..+.++++.++..-.+.| ++.++..+-++
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e 148 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 148 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence 4445566666655432 1221100013455666666667778888888888887766543346 55333333222
Q ss_pred ------hhhccc-CCChHHHHHHHHHHHHHHHHc
Q psy10471 229 ------VWPNIF-ETSPHLVQAFMDAVEGLRVAL 255 (318)
Q Consensus 229 ------l~~~i~-d~~~~vr~~ii~~i~~i~~al 255 (318)
++..+. +.+.+++.+.+..|-.+....
T Consensus 149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC
Confidence 112222 233455555666555555554
No 155
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=21.76 E-value=1.2e+02 Score=25.52 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471 30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA 109 (318)
Q Consensus 30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~ 109 (318)
..+.+.+-.+|+++-+||+|+..+ +.-. ...++....+++. ..++|+..-||.+.-+.|-.+++ -.|..+..
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~--~~~d~~~~~~~i~---~~~~d~~~yV~kAvgW~Lr~~~k-~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYK--QKMDEELLFWIIG---QLHSSKEFFIQKAIGWVLREYAK-TNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCG--GGCCHHHHHHHHH---HHTTCCCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHH--hCCCHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHh-hCHHHHHH
Confidence 445667777889999999987543 3211 1111344444443 55678888899999999999987 47776655
Q ss_pred HHHH
Q psy10471 110 TLLN 113 (318)
Q Consensus 110 ~Ll~ 113 (318)
-+-+
T Consensus 204 fl~~ 207 (232)
T 3jxy_A 204 YVQN 207 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.07 E-value=64 Score=25.37 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=41.8
Q ss_pred cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh-----c----CC--HHHHHHHHHHHHHH
Q psy10471 141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-----D----RD--LVHRQTACATIKHM 209 (318)
Q Consensus 141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~-----~----~~--~~~R~~a~~~i~~l 209 (318)
.++..|++.+++.+.++.--+++.|.++++.=...|+..+..=+..+..+.. + .+ ..||..|-++++.|
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 5677788888888877766677777777764333455544333333343331 1 11 57787777776554
Done!