Your job contains 1 sequence.
>psy10471
MSSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRG
PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI
YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL
VQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPR
IQNDMKNVYLRYELDYVL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10471
(318 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0031266 - symbol:CG2807 species:7227 "Drosophila m... 1333 4.1e-136 1
UNIPROTKB|E1C2C3 - symbol:SF3B1 "Uncharacterized protein"... 1300 1.3e-132 1
UNIPROTKB|F1MX61 - symbol:SF3B1 "Uncharacterized protein"... 1299 1.6e-132 1
UNIPROTKB|O75533 - symbol:SF3B1 "Splicing factor 3B subun... 1299 1.6e-132 1
UNIPROTKB|G3V7T6 - symbol:Sf3b1 "Splicing factor 3b, subu... 1299 1.6e-132 1
MGI|MGI:1932339 - symbol:Sf3b1 "splicing factor 3b, subun... 1296 3.4e-132 1
UNIPROTKB|F1SMZ9 - symbol:SF3B1 "Uncharacterized protein"... 1288 2.4e-131 1
ZFIN|ZDB-GENE-040827-3 - symbol:sf3b1 "splicing factor 3b... 1280 1.7e-130 1
TAIR|locus:2173333 - symbol:AT5G64270 species:3702 "Arabi... 1201 2.1e-126 2
DICTYBASE|DDB_G0275957 - symbol:sf3b1 "splicing factor 3B... 1162 5.4e-118 1
WB|WBGene00011605 - symbol:T08A11.2 species:6239 "Caenorh... 1131 1.0e-114 1
UNIPROTKB|G4NCP7 - symbol:MGG_00356 "Splicing factor 3B s... 1026 1.4e-103 1
ASPGD|ASPL0000047410 - symbol:AN2420 species:162425 "Emer... 1013 3.3e-102 1
POMBASE|SPAC27F1.09c - symbol:prp10 "U2 snRNP-associated ... 1001 6.2e-101 1
CGD|CAL0003514 - symbol:orf19.2675 species:5476 "Candida ... 831 6.4e-83 1
SGD|S000004901 - symbol:HSH155 "U2-snRNP associated splic... 825 2.8e-82 1
>FB|FBgn0031266 [details] [associations]
symbol:CG2807 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] InterPro:IPR016024 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AE014134 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 KO:K12828 OMA:GVEAQYI
InterPro:IPR015016 Pfam:PF08920 GeneTree:ENSGT00390000018393
RefSeq:NP_608534.2 ProteinModelPortal:Q9VPR5 SMR:Q9VPR5
IntAct:Q9VPR5 MINT:MINT-1730767 STRING:Q9VPR5
EnsemblMetazoa:FBtr0078068 EnsemblMetazoa:FBtr0332340 GeneID:33235
KEGG:dme:Dmel_CG2807 UCSC:CG2807-RA FlyBase:FBgn0031266
InParanoid:Q9VPR5 OrthoDB:EOG4Z8WBG PhylomeDB:Q9VPR5 ChiTaRS:CG2807
GenomeRNAi:33235 NextBio:782588 ArrayExpress:Q9VPR5 Bgee:Q9VPR5
Uniprot:Q9VPR5
Length = 1340
Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
Identities = 253/294 (86%), Positives = 269/294 (91%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRGPEYVSAREWMRICF KAHK
Sbjct: 1047 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 1106
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAE+C PFTVLP
Sbjct: 1107 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAESCRPFTVLP 1166
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV PLLEDALMDRDLVHRQTAC+
Sbjct: 1167 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVCPLLEDALMDRDLVHRQTACS 1226
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
IKHM+LGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMD+V+GLRV+LGP++ILQY
Sbjct: 1227 AIKHMSLGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDSVDGLRVSLGPIKILQYT 1286
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHPARKVRDVYWKIYNSLYIGGQDALI+ YPRI ND KN Y RYELDY L
Sbjct: 1287 LQGLFHPARKVRDVYWKIYNSLYIGGQDALIAGYPRITNDPKNQYERYELDYTL 1340
Score = 190 (71.9 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 51/156 (32%), Positives = 78/156 (50%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV 64
++ GIKIVQQIAILMGCAILPHLK LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 697 RHTGIKIVQQIAILMGCAILPHLKALVEIIEHGLVDEQQKVRTITALAIAALAEAATPY- 755
Query: 65 SAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKV 117
+ + + H+ A + GY+ + +V+ L+ +
Sbjct: 756 GIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQS 815
Query: 118 QERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP 153
+ + + + + +V + C+ V P + E +P
Sbjct: 816 PDEEMK---KIVLKVVKQCCATDGVEPQYIKEEILP 848
>UNIPROTKB|E1C2C3 [details] [associations]
symbol:SF3B1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR016024 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003682 GO:GO:0071013 GO:GO:0005689
CTD:23451 KO:K12828 OMA:GVEAQYI InterPro:IPR015016 Pfam:PF08920
GeneTree:ENSGT00390000018393 EMBL:AADN02019806 IPI:IPI00572822
RefSeq:XP_421912.3 Ensembl:ENSGALT00000013044 GeneID:424056
KEGG:gga:424056 Uniprot:E1C2C3
Length = 1301
Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
Identities = 245/294 (83%), Positives = 266/294 (90%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICF KAHK
Sbjct: 1008 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1067
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct: 1068 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1127
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct: 1128 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1187
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY
Sbjct: 1188 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1247
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1248 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL 1301
Score = 187 (70.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 658 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPY 716
Score = 65 (27.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 92 VNTFGYIAKAIG----PH--DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
+N FG + A+G P+ + T+L NN + RQ A+V +TC +
Sbjct: 908 LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKL 967
Query: 143 ---LPALMNEYRVPEL-NVQNGVLKALSFLFEYIG--EMG---KDYIYAVTPLLED 189
L ++ EY E V +L AL + IG +M KD + +TP+L++
Sbjct: 968 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKN 1023
Score = 55 (24.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/175 (17%), Positives = 70/175 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T +A +G ++++ ++++LK + Q R I + + L
Sbjct: 828 RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE 887
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ Y E ++ V L + +G+ K Y+ + + L ++ RQ
Sbjct: 888 QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ 947
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256
A I A+ + E + HL ++ + E P ++ + + A++ + +G
Sbjct: 948 AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1002
>UNIPROTKB|F1MX61 [details] [associations]
symbol:SF3B1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR016024 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009952 GO:GO:0003682 GO:GO:0071013
GO:GO:0005689 CTD:23451 KO:K12828 OMA:GVEAQYI InterPro:IPR015016
Pfam:PF08920 GeneTree:ENSGT00390000018393 EMBL:DAAA02005513
EMBL:DAAA02005514 IPI:IPI00686595 RefSeq:NP_001179923.1
UniGene:Bt.43697 PRIDE:F1MX61 Ensembl:ENSBTAT00000011734
GeneID:510177 KEGG:bta:510177 NextBio:20869314 Uniprot:F1MX61
Length = 1304
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 245/294 (83%), Positives = 266/294 (90%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICF KAHK
Sbjct: 1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct: 1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct: 1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY
Sbjct: 1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304
Score = 187 (70.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 661 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPY 719
Score = 65 (27.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 92 VNTFGYIAKAIG----PH--DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
+N FG + A+G P+ + T+L NN + RQ A+V +TC +
Sbjct: 911 LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKL 970
Query: 143 ---LPALMNEYRVPEL-NVQNGVLKALSFLFEYIG--EMG---KDYIYAVTPLLED 189
L ++ EY E V +L AL + IG +M KD + +TP+L++
Sbjct: 971 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKN 1026
Score = 55 (24.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/175 (17%), Positives = 70/175 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T +A +G ++++ ++++LK + Q R I + + L
Sbjct: 831 RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE 890
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ Y E ++ V L + +G+ K Y+ + + L ++ RQ
Sbjct: 891 QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ 950
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256
A I A+ + E + HL ++ + E P ++ + + A++ + +G
Sbjct: 951 AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1005
>UNIPROTKB|O75533 [details] [associations]
symbol:SF3B1 "Splicing factor 3B subunit 1" species:9606
"Homo sapiens" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;NAS;TAS] [GO:0000375 "RNA splicing,
via transesterification reactions" evidence=NAS] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR016024 EMBL:AF054284
GO:GO:0005654 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0009952 GO:GO:0016607 Reactome:REACT_1675
GO:GO:0003682 EMBL:AC010746 GO:GO:0000398 GO:GO:0071013
GO:GO:0005689 PDB:2F9D PDB:2F9J PDB:2FHO PDB:3LQV PDBsum:2F9D
PDBsum:2F9J PDBsum:2FHO PDBsum:3LQV EMBL:AF070540 IPI:IPI00026089
RefSeq:NP_036565.2 UniGene:Hs.632554 PDB:2PEH PDBsum:2PEH
ProteinModelPortal:O75533 SMR:O75533 DIP:DIP-29411N IntAct:O75533
MINT:MINT-1185911 STRING:O75533 PhosphoSite:O75533 PaxDb:O75533
PRIDE:O75533 Ensembl:ENST00000335508 GeneID:23451 KEGG:hsa:23451
UCSC:uc002uue.3 CTD:23451 GeneCards:GC02M198256 HGNC:HGNC:10768
MIM:605590 neXtProt:NX_O75533 PharmGKB:PA35686 eggNOG:COG5181
HOGENOM:HOG000166737 HOVERGEN:HBG079173 InParanoid:O75533 KO:K12828
OMA:GVEAQYI OrthoDB:EOG4RJG0Q PhylomeDB:O75533 ChEMBL:CHEMBL1229013
EvolutionaryTrace:O75533 GenomeRNAi:23451 NextBio:45735
PMAP-CutDB:O75533 ArrayExpress:O75533 Bgee:O75533 CleanEx:HS_SF3B1
Genevestigator:O75533 GermOnline:ENSG00000115524 InterPro:IPR015016
Pfam:PF08920 Uniprot:O75533
Length = 1304
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 245/294 (83%), Positives = 266/294 (90%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICF KAHK
Sbjct: 1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct: 1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct: 1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY
Sbjct: 1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304
Score = 187 (70.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 661 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPY 719
Score = 65 (27.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 92 VNTFGYIAKAIG----PH--DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
+N FG + A+G P+ + T+L NN + RQ A+V +TC +
Sbjct: 911 LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKL 970
Query: 143 ---LPALMNEYRVPEL-NVQNGVLKALSFLFEYIG--EMG---KDYIYAVTPLLED 189
L ++ EY E V +L AL + IG +M KD + +TP+L++
Sbjct: 971 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKN 1026
Score = 55 (24.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/175 (17%), Positives = 70/175 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T +A +G ++++ ++++LK + Q R I + + L
Sbjct: 831 RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE 890
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ Y E ++ V L + +G+ K Y+ + + L ++ RQ
Sbjct: 891 QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ 950
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256
A I A+ + E + HL ++ + E P ++ + + A++ + +G
Sbjct: 951 AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1005
>UNIPROTKB|G3V7T6 [details] [associations]
symbol:Sf3b1 "Splicing factor 3b, subunit 1, isoform CRA_b"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR016024 RGD:620148
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CH473965
CTD:23451 KO:K12828 OMA:GVEAQYI InterPro:IPR015016 Pfam:PF08920
GeneTree:ENSGT00390000018393 RefSeq:NP_445878.1 UniGene:Rn.198843
ProteinModelPortal:G3V7T6 SMR:G3V7T6 PRIDE:G3V7T6
Ensembl:ENSRNOT00000019126 GeneID:84486 KEGG:rno:84486
NextBio:617020 Uniprot:G3V7T6
Length = 1304
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 245/294 (83%), Positives = 266/294 (90%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICF KAHK
Sbjct: 1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct: 1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct: 1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY
Sbjct: 1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304
Score = 187 (70.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 661 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPY 719
Score = 65 (27.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 92 VNTFGYIAKAIG----PH--DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
+N FG + A+G P+ + T+L NN + RQ A+V +TC +
Sbjct: 911 LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKL 970
Query: 143 ---LPALMNEYRVPEL-NVQNGVLKALSFLFEYIG--EMG---KDYIYAVTPLLED 189
L ++ EY E V +L AL + IG +M KD + +TP+L++
Sbjct: 971 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKN 1026
Score = 55 (24.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/175 (17%), Positives = 70/175 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T +A +G ++++ ++++LK + Q R I + + L
Sbjct: 831 RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE 890
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ Y E ++ V L + +G+ K Y+ + + L ++ RQ
Sbjct: 891 QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ 950
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256
A I A+ + E + HL ++ + E P ++ + + A++ + +G
Sbjct: 951 AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1005
>MGI|MGI:1932339 [details] [associations]
symbol:Sf3b1 "splicing factor 3b, subunit 1" species:10090
"Mus musculus" [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR016024 MGI:MGI:1932339 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 PROSITE:PS50077 GO:GO:0009952
GO:GO:0003682 GO:GO:0005681 GO:GO:0000398 eggNOG:COG5181
HOGENOM:HOG000166737 HOVERGEN:HBG079173 OrthoDB:EOG4RJG0Q
InterPro:IPR015016 Pfam:PF08920 EMBL:AB037890 EMBL:AK012632
IPI:IPI00623284 UniGene:Mm.279736 ProteinModelPortal:Q99NB9
SMR:Q99NB9 STRING:Q99NB9 PhosphoSite:Q99NB9 PaxDb:Q99NB9
PRIDE:Q99NB9 UCSC:uc007azx.1 InParanoid:Q99NB9 CleanEx:MM_SF3B1
Genevestigator:Q99NB9 GermOnline:ENSMUSG00000025982 Uniprot:Q99NB9
Length = 1304
Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
Identities = 244/294 (82%), Positives = 266/294 (90%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICF KAHK
Sbjct: 1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct: 1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct: 1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY
Sbjct: 1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct: 1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304
Score = 187 (70.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 661 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPY 719
Score = 65 (27.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 92 VNTFGYIAKAIG----PH--DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
+N FG + A+G P+ + T+L NN + RQ A+V +TC +
Sbjct: 911 LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKL 970
Query: 143 ---LPALMNEYRVPEL-NVQNGVLKALSFLFEYIG--EMG---KDYIYAVTPLLED 189
L ++ EY E V +L AL + IG +M KD + +TP+L++
Sbjct: 971 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKN 1026
Score = 55 (24.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/175 (17%), Positives = 70/175 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T +A +G ++++ ++++LK + Q R I + + L
Sbjct: 831 RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE 890
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ Y E ++ V L + +G+ K Y+ + + L ++ RQ
Sbjct: 891 QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ 950
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256
A I A+ + E + HL ++ + E P ++ + + A++ + +G
Sbjct: 951 AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1005
>UNIPROTKB|F1SMZ9 [details] [associations]
symbol:SF3B1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR016024 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009952 GO:GO:0003682 GO:GO:0071013
GO:GO:0005689 OMA:GVEAQYI InterPro:IPR015016 Pfam:PF08920
GeneTree:ENSGT00390000018393 EMBL:CU468160
Ensembl:ENSSSCT00000017503 Uniprot:F1SMZ9
Length = 1303
Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
Identities = 245/296 (82%), Positives = 266/296 (89%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR--GPEYVSAREWMRICFXXXXXXKA 82
P +K+L+ + L + +KVQENCIDLVGRIADR G EYVSAREWMRICF KA
Sbjct: 1008 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRIRGAEYVSAREWMRICFELLELLKA 1067
Query: 83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1068 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1127
Query: 143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct: 1128 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1187
Query: 203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQ
Sbjct: 1188 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ 1247
Query: 263 YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1248 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1303
Score = 187 (70.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 658 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPY 716
Score = 65 (27.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 92 VNTFGYIAKAIG----PH--DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
+N FG + A+G P+ + T+L NN + RQ A+V +TC +
Sbjct: 908 LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKL 967
Query: 143 ---LPALMNEYRVPEL-NVQNGVLKALSFLFEYIG--EMG---KDYIYAVTPLLED 189
L ++ EY E V +L AL + IG +M KD + +TP+L++
Sbjct: 968 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKN 1023
Score = 55 (24.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/175 (17%), Positives = 70/175 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T +A +G ++++ ++++LK + Q R I + + L
Sbjct: 828 RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE 887
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ Y E ++ V L + +G+ K Y+ + + L ++ RQ
Sbjct: 888 QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ 947
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256
A I A+ + E + HL ++ + E P ++ + + A++ + +G
Sbjct: 948 AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1002
>ZFIN|ZDB-GENE-040827-3 [details] [associations]
symbol:sf3b1 "splicing factor 3b, subunit 1"
species:7955 "Danio rerio" [GO:0030318 "melanocyte differentiation"
evidence=IGI;IMP] [GO:0014032 "neural crest cell development"
evidence=IMP] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] InterPro:IPR016024 ZFIN:ZDB-GENE-040827-3
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0042981
GO:GO:0014032 GO:GO:0030318 CTD:23451 KO:K12828 InterPro:IPR015016
Pfam:PF08920 GeneTree:ENSGT00390000018393 EMBL:BX530407
IPI:IPI00489117 RefSeq:XP_684311.1 UniGene:Dr.32149
Ensembl:ENSDART00000129140 GeneID:446117 KEGG:dre:446117
NextBio:20832227 ArrayExpress:F1QGM7 Bgee:F1QGM7 Uniprot:F1QGM7
Length = 1315
Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
Identities = 243/294 (82%), Positives = 264/294 (89%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG EYVSAREWMRICF KAHK
Sbjct: 1022 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1081
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct: 1082 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1141
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct: 1142 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1201
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY
Sbjct: 1202 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1261
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YP I ND KN Y+RYEL+Y L
Sbjct: 1262 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLIFNDEKNSYVRYELEYFL 1315
Score = 187 (70.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHL++LVEIIEHGLVDEQQKV+ + +A+ Y
Sbjct: 672 RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPY 730
Score = 65 (27.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 92 VNTFGYIAKAIG----PH--DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
+N FG + A+G P+ + T+L NN + RQ A+V +TC +
Sbjct: 922 LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKL 981
Query: 143 ---LPALMNEYRVPEL-NVQNGVLKALSFLFEYIG--EMG---KDYIYAVTPLLED 189
L ++ EY E V +L AL + IG +M KD + +TP+L++
Sbjct: 982 MGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKN 1037
Score = 55 (24.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/175 (17%), Positives = 70/175 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T +A +G ++++ ++++LK + Q R I + + L
Sbjct: 842 RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE 901
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ Y E ++ V L + +G+ K Y+ + + L ++ RQ
Sbjct: 902 QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ 961
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG 256
A I A+ + E + HL ++ + E P ++ + + A++ + +G
Sbjct: 962 AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG 1016
>TAIR|locus:2173333 [details] [associations]
symbol:AT5G64270 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0009507 "chloroplast" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR016024 EMBL:CP002688
GO:GO:0009507 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 EMBL:AB008268
HOGENOM:HOG000166737 KO:K12828 OMA:GVEAQYI InterPro:IPR015016
Pfam:PF08920 IPI:IPI00547640 RefSeq:NP_201232.1 UniGene:At.7385
ProteinModelPortal:Q9FMF9 SMR:Q9FMF9 IntAct:Q9FMF9 STRING:Q9FMF9
PRIDE:Q9FMF9 EnsemblPlants:AT5G64270.1 GeneID:836548
KEGG:ath:AT5G64270 TAIR:At5g64270 InParanoid:Q9FMF9
PhylomeDB:Q9FMF9 ProtClustDB:CLSN2686249 Genevestigator:Q9FMF9
Uniprot:Q9FMF9
Length = 1269
Score = 1201 (427.8 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 228/290 (78%), Positives = 252/290 (86%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG E+V AREWMRICF KAHK
Sbjct: 976 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHK 1035
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
K IRRATVNTFGYIAKAIGP DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct: 1036 KGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1095
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA +
Sbjct: 1096 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAAS 1155
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
+KHMALGV G GCEDAL HLLN++WPNIFETSPH++ A M+A+EG+RVALG IL Y
Sbjct: 1156 AVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALGAAVILNYC 1215
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYEL 314
LQGLFHPARKVR+VYWKIYNSLYIG QD L++AYP ++++ NVY R EL
Sbjct: 1216 LQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPEL 1265
Score = 172 (65.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV 64
++ GIKIVQQIAIL+GCA+LPHL++LVEIIEHGL DE QKV+ + +A+ Y
Sbjct: 625 RHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDENQKVRTITALSLAALAEAAAPY- 683
Query: 65 SAREWMRICFXXXXXXKAHKKAIRRATVNTFGYI 98
+ + ++H+ + A + G+I
Sbjct: 684 GIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFI 717
Score = 61 (26.5 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 2 SSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIA 57
S D N+ + + +G + P+L + I+ L ++ KV++ DL+ RIA
Sbjct: 869 SDDANVMLNGFGAVVNALGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIA 924
>DICTYBASE|DDB_G0275957 [details] [associations]
symbol:sf3b1 "splicing factor 3B subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000245
"spliceosomal complex assembly" evidence=ISS] InterPro:IPR016024
dictyBase:DDB_G0275957 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003729
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0000245
GO:GO:0005686 eggNOG:COG5181 KO:K12828 OMA:GVEAQYI
InterPro:IPR015016 Pfam:PF08920 RefSeq:XP_643385.1
ProteinModelPortal:Q86JC5 SMR:Q86JC5 STRING:Q86JC5
EnsemblProtists:DDB0233168 GeneID:8620270 KEGG:ddi:DDB_G0275957
InParanoid:Q86JC5 Uniprot:Q86JC5
Length = 1051
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 218/294 (74%), Positives = 250/294 (85%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVGRIADRG ++VS RE MRICF KAHK
Sbjct: 758 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGSDFVSDREGMRICFELLDMLKAHK 817
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
K IRRA VNTFGYIAKAIGP +VLATLLNNLKVQ+RQNRVCTTVAIAIVAETC+P+TVLP
Sbjct: 818 KGIRRAAVNTFGYIAKAIGPQEVLATLLNNLKVQDRQNRVCTTVAIAIVAETCAPYTVLP 877
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
L+NEYR+PELNVQNGVLK+LSFLFEYIGEMGKDYIYAVT LLEDALMDRD VHRQTAC+
Sbjct: 878 GLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMDRDAVHRQTACS 937
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
IKH++LGV G GCED+LTHLLNYVWPN+FETSPH++ AF++AVEGLR ALGP ILQY
Sbjct: 938 AIKHISLGVMGLGCEDSLTHLLNYVWPNVFETSPHVINAFLEAVEGLRFALGPNTILQYT 997
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQGLFHP+RKVR++YWK+YN LYI QDAL YPR ++ N Y RYELD+V+
Sbjct: 998 LQGLFHPSRKVRNIYWKLYNMLYISSQDALTPCYPRTLDENDNKYQRYELDFVI 1051
Score = 177 (67.4 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQIAILMGCAILPHLKNLV I+EHGL DEQ KV+ + +A+ Y
Sbjct: 407 RHTGIKIVQQIAILMGCAILPHLKNLVVIVEHGLTDEQPKVRTITALAISALAEAATPY 465
>WB|WBGene00011605 [details] [associations]
symbol:T08A11.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR016024 GO:GO:0008340
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0002119 GO:GO:0040011
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 EMBL:Z50874
KO:K12828 OMA:GVEAQYI InterPro:IPR015016 Pfam:PF08920
GeneTree:ENSGT00390000018393 EMBL:Z50875 PIR:T24140
RefSeq:NP_497853.1 ProteinModelPortal:G5EEQ8 SMR:G5EEQ8
EnsemblMetazoa:T08A11.2 GeneID:175549 KEGG:cel:CELE_T08A11.2
CTD:175549 WormBase:T08A11.2 NextBio:888628 Uniprot:G5EEQ8
Length = 1322
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 211/294 (71%), Positives = 248/294 (84%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P +K+L+ + L + +KVQENCIDLVG IADRG E+VSAREWMRICF KAHK
Sbjct: 1029 PPIKDLLPRLTPILKNRHEKVQENCIDLVGAIADRGSEFVSAREWMRICFELLELLKAHK 1088
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
K+IRRA +NTFG+IAKAIGPHDVLATLLNNLKVQERQ RVCTTVAIAIV+ETC+PFTVLP
Sbjct: 1089 KSIRRAAINTFGFIAKAIGPHDVLATLLNNLKVQERQLRVCTTVAIAIVSETCAPFTVLP 1148
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
A+MNEYRVPE+NVQNGVLKALSF+FEYIGEM KDYIYAV PLL DALM+RD VHRQ A
Sbjct: 1149 AIMNEYRVPEINVQNGVLKALSFMFEYIGEMAKDYIYAVVPLLIDALMERDQVHRQIAVD 1208
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
+ H+A+GVYGFGCEDAL HLLNYVWPN+ E SPHL+Q ++ A EG+RV+LGP+++LQY
Sbjct: 1209 AVAHLAIGVYGFGCEDALIHLLNYVWPNMLENSPHLIQRWVFACEGMRVSLGPIKVLQYC 1268
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
LQ L+HPARKVR+ WK++N+L +G DALI+AYPRI+N N Y+RYELDY L
Sbjct: 1269 LQALWHPARKVREPVWKVFNNLILGSADALIAAYPRIENTPTNQYVRYELDYNL 1322
Score = 161 (61.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ GIKIVQQ+AILMGCA+LPHLK LV+I+E GL DEQQKV+ + +A+ Y
Sbjct: 679 RHTGIKIVQQMAILMGCAVLPHLKALVDIVESGLDDEQQKVRTITALCLAALAEASSPY 737
>UNIPROTKB|G4NCP7 [details] [associations]
symbol:MGG_00356 "Splicing factor 3B subunit 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR016024 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CM001235 GO:GO:0043581
KO:K12828 InterPro:IPR015016 Pfam:PF08920 RefSeq:XP_003718725.1
ProteinModelPortal:G4NCP7 EnsemblFungi:MGG_00356T0 GeneID:2674968
KEGG:mgr:MGG_00356 Uniprot:G4NCP7
Length = 1215
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 192/294 (65%), Positives = 237/294 (80%)
Query: 12 VQQIAILMGCAIL-PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM 70
++ I ++G + + P +K+L+ + L + +KVQEN IDLVGRIADRGPE V+AREWM
Sbjct: 911 LRSIVTVVGISQMQPPIKDLLPRLTPILRNRHEKVQENTIDLVGRIADRGPESVNAREWM 970
Query: 71 RICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI 130
RICF KAHKK IRRA NTFG+IAKAIGP DVLATLLNNL+VQERQ+RV T VAI
Sbjct: 971 RICFELLDMLKAHKKGIRRAANNTFGFIAKAIGPQDVLATLLNNLRVQERQSRVNTAVAI 1030
Query: 131 AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA 190
I+AETC+PFTVLPALMNEYRVPELNVQNGVLK+LSF+FEYIGEM KDY+YAVTPLLEDA
Sbjct: 1031 GIIAETCAPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMAKDYVYAVTPLLEDA 1090
Query: 191 LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG 250
L+DRD VHRQTA + +KH+ALGV G GCEDA+ HLLN ++PN+FETSPH++ ++A+E
Sbjct: 1091 LIDRDQVHRQTAASVVKHIALGVVGLGCEDAMVHLLNLLYPNLFETSPHVIDRIIEAIEA 1150
Query: 251 LRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQND 304
+R+A+GP +L YV GLFHPARKVR YW++YN Y+ G DA++ YP ++ D
Sbjct: 1151 VRMAVGPGLVLNYVWAGLFHPARKVRTPYWRLYNDAYVQGADAMVPYYPTLEED 1204
Score = 136 (52.9 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ G+KIVQQI ILMGCA+LPHLK LV+ I L DEQ KV+ + +A+ Y
Sbjct: 575 RHTGVKIVQQIPILMGCAVLPHLKRLVDCIGPNLNDEQTKVRTVTSLAIAALAEAANPY 633
Score = 67 (28.6 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 36/176 (20%), Positives = 70/176 (39%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V T I + +G ++L ++ NLK + R T + + + V L
Sbjct: 745 RQVVETTVDIGQKVGAGEILERIVINLKDESEPYRKMTVETVEKIVASLGAADVGERLEE 804
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
+ E +V++ + L + +G K Y+ + + L ++ RQ
Sbjct: 805 RLIDGILHAFQEQSVEDVIMLNGFGSVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQ 864
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYV-WPNIFETSPHLVQAFMDAVEGLRVALG 256
A I +A+ + G EDAL L V + + E P ++ + + A+ + +G
Sbjct: 865 AADLISRIAMVMKQCG-EDALMGKLGVVLYEYLGEEYPEVLGSILGALRSIVTVVG 919
Score = 37 (18.1 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 142 VLPALMNEYRVPELNVQNGVLKALS 166
++ L+ E+ P+ ++ VLK +S
Sbjct: 683 IMEILLREFSSPDEEMKKVVLKVVS 707
>ASPGD|ASPL0000047410 [details] [associations]
symbol:AN2420 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR016024 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:BN001307 EMBL:AACD01000039 eggNOG:COG5181
HOGENOM:HOG000166737 KO:K12828 InterPro:IPR015016 Pfam:PF08920
OMA:PKEWMRI OrthoDB:EOG4350F5 RefSeq:XP_660024.1
ProteinModelPortal:Q5BAL0 SMR:Q5BAL0 STRING:Q5BAL0
EnsemblFungi:CADANIAT00009127 GeneID:2874860 KEGG:ani:AN2420.2
Uniprot:Q5BAL0
Length = 1224
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 191/294 (64%), Positives = 233/294 (79%)
Query: 12 VQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM 70
++ I ++G + P +++L+ + L + +KVQEN IDLVGRIADRGPE V+AREWM
Sbjct: 920 LRSIVTVVGINQMQPPIRDLLPRLTPILRNRHEKVQENTIDLVGRIADRGPESVNAREWM 979
Query: 71 RICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI 130
RICF KAHKK IRRA NTFG+IAKAIGP DVLATLLNNL+VQERQ+RVCT VAI
Sbjct: 980 RICFELLDMLKAHKKGIRRAANNTFGFIAKAIGPQDVLATLLNNLRVQERQSRVCTAVAI 1039
Query: 131 AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA 190
IVAETC+PFTVLPALMNEYRVPELNVQNGVLKA++FLFEYIGEM KDY+YAVTPLLEDA
Sbjct: 1040 GIVAETCAPFTVLPALMNEYRVPELNVQNGVLKAMTFLFEYIGEMAKDYVYAVTPLLEDA 1099
Query: 191 LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG 250
L+DRD VHRQTA +KH+ALGV G GCEDA+ HLLN V+PNIFETSPH++ ++A++
Sbjct: 1100 LIDRDQVHRQTAATVVKHIALGVVGLGCEDAMVHLLNLVFPNIFETSPHVIDRVIEAIDA 1159
Query: 251 LRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQND 304
+R+A+G ++ YV GLFH ARKVR YW++YN Y+ DA+I YP ++ D
Sbjct: 1160 IRMAVGTGTVMNYVWAGLFHSARKVRTPYWRLYNDAYVQSADAIIPYYPELEED 1213
Score = 148 (57.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 32/59 (54%), Positives = 39/59 (66%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEY 63
++ G+KIVQQI ILMGCAILPHLK LV+ I L DEQ KV+ VG +A+ Y
Sbjct: 584 RHTGVKIVQQIPILMGCAILPHLKGLVDCIADNLSDEQAKVRTVTALAVGALAEAANPY 642
Score = 78 (32.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 36/176 (20%), Positives = 71/176 (40%)
Query: 89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN 148
R V+T + + +G ++L ++NNLK + R T + + + L
Sbjct: 754 RQVVDTTVDLGQKVGAGEILERIINNLKDESEPYRKMTVETVEKTIASLGAADISERLEE 813
Query: 149 E------YRVPELNVQNGV-LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
Y E ++++ + L + +G K Y+ + + L ++ RQ
Sbjct: 814 RLIDGVLYAFQEQSIEDIIILNGFGTVVNALGTRCKPYLPQIVSTILWRLNNKSATVRQQ 873
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYV-WPNIFETSPHLVQAFMDAVEGLRVALG 256
A I +AL + G EDAL L V + + E P ++ + + A+ + +G
Sbjct: 874 AADLISRIALVMKQCG-EDALMGKLGIVLYEYLGEEYPEVLGSILGALRSIVTVVG 928
>POMBASE|SPAC27F1.09c [details] [associations]
symbol:prp10 "U2 snRNP-associated protein Sap155"
species:4896 "Schizosaccharomyces pombe" [GO:0000245 "spliceosomal
complex assembly" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] InterPro:IPR016024 PomBase:SPAC27F1.09c EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GenomeReviews:CU329670_GR GO:GO:0003729
GO:GO:0005681 GO:GO:0000245 GO:GO:0005686 GO:GO:0045292
HOGENOM:HOG000166737 KO:K12828 InterPro:IPR015016 Pfam:PF08920
EMBL:AB027815 PIR:T38467 RefSeq:NP_594538.2 IntAct:Q10178
STRING:Q10178 GeneID:2541619 KEGG:spo:SPAC27F1.09c OMA:PKEWMRI
OrthoDB:EOG4350F5 NextBio:20802713 Uniprot:Q10178
Length = 1205
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 186/299 (62%), Positives = 233/299 (77%)
Query: 12 VQQIAILMGCAIL-PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM 70
++ I ++G + + P +++L+ + L + +KVQEN IDLVG+IADRG EYVSAREWM
Sbjct: 898 IKAIVSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTIDLVGKIADRGSEYVSAREWM 957
Query: 71 RICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI 130
RICF KAHKK+IRRA VNTFGYI+KAIGP DVLATLLNNLKVQERQNRVCTTVAI
Sbjct: 958 RICFELIDMLKAHKKSIRRAAVNTFGYISKAIGPQDVLATLLNNLKVQERQNRVCTTVAI 1017
Query: 131 AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA 190
AIVAETC PFTV+PALM +YR PE+NVQNGVLK+L+F+FEYIGE +DY+YA+TPLL DA
Sbjct: 1018 AIVAETCMPFTVVPALMADYRTPEMNVQNGVLKSLAFMFEYIGEQARDYVYAITPLLADA 1077
Query: 191 LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG 250
LMDRD VHRQTA + IKH++LG G G EDA+ HLLN +WPNI E SPH++ A + ++G
Sbjct: 1078 LMDRDAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVINAVREGIDG 1137
Query: 251 LRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVY 309
+R +G I+ Y++QGLFHP+RKVR+ YW YNS Y+ DA++ YP + +D N Y
Sbjct: 1138 IRNCIGVGPIMAYLVQGLFHPSRKVRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNY 1196
Score = 159 (61.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV 64
++ G++I+QQIA+L+GC+ILPHLKNLV+ I HGL DEQQKV+ + +A+ Y
Sbjct: 562 RHTGVRIIQQIALLLGCSILPHLKNLVDCIGHGLEDEQQKVRIMTALSLSALAEAATPY- 620
Query: 65 SAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ--- 121
+ + + H+ A + G+I + P +K+ R+
Sbjct: 621 GIEAFDSVLKPLWSGVQRHRGKSLAAFLKATGFIIPLMEPEYASHFTRRIMKILLREFNS 680
Query: 122 -NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE 154
+ + + +V++ S V P + +PE
Sbjct: 681 PDEEMKKIVLKVVSQCASTDGVTPEYLRTDVLPE 714
>CGD|CAL0003514 [details] [associations]
symbol:orf19.2675 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=IEA] InterPro:IPR016024
CGD:CAL0003514 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:AACQ01000023 EMBL:AACQ01000025 eggNOG:COG5181
RefSeq:XP_720198.1 RefSeq:XP_720428.1 ProteinModelPortal:Q5AFD2
STRING:Q5AFD2 GeneID:3637842 GeneID:3638121 KEGG:cal:CaO19.10190
KEGG:cal:CaO19.2675 Uniprot:Q5AFD2
Length = 1094
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 164/301 (54%), Positives = 208/301 (69%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P + ++ + L + +KVQE CI LVG IA + E ++A+EWMRICF KA +
Sbjct: 794 PSINQILPTLTPILKNRHEKVQEACIKLVGLIARKNSETINAKEWMRICFDLLEMLKAQR 853
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
K IR A NTFGYIAK IGP DV+ LLNNL+VQERQ RVCT VA+ IVAETC PFTVLP
Sbjct: 854 KRIRIAANNTFGYIAKTIGPQDVIVMLLNNLRVQERQLRVCTAVAMGIVAETCLPFTVLP 913
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYI-GEMGKDYIYAVTPLLEDALMDRDLVHRQTAC 203
A+MNEYR+PE NVQNGVLKA+SF+FEY+ G++ KDY++A+TPLLEDAL DRDLVHRQTA
Sbjct: 914 AIMNEYRIPEKNVQNGVLKAMSFMFEYLDGKITKDYLFAITPLLEDALTDRDLVHRQTAA 973
Query: 204 ATIKHMALGVYGF---GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 260
I H+A+ G D H LN + PNIFETSPH++ +++++ LR+ +G
Sbjct: 974 TVIFHIAMNCIGLTDKDYSDVFIHYLNLIMPNIFETSPHVISRILESIDALRLVIGNGVF 1033
Query: 261 LQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQN--DMKNV-YLRYELDYV 317
Y+ GLFHPARKVR YWKI+N+ Y+ DAL+ YPRI++ D + Y ELD
Sbjct: 1034 TNYIWSGLFHPARKVRAPYWKIFNNAYVQCSDALVPCYPRIESLPDEDEISYKLEELDLF 1093
Query: 318 L 318
L
Sbjct: 1094 L 1094
>SGD|S000004901 [details] [associations]
symbol:HSH155 "U2-snRNP associated splicing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS;IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] InterPro:IPR016024
SGD:S000004901 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003729 EMBL:BK006946 EMBL:Z49704
GO:GO:0000245 GO:GO:0005686 GO:GO:0071004 eggNOG:COG5181
HOGENOM:HOG000166737 KO:K12828 OMA:PKEWMRI OrthoDB:EOG4350F5
PIR:S54595 RefSeq:NP_014015.1 ProteinModelPortal:P49955 SMR:P49955
DIP:DIP-2628N IntAct:P49955 MINT:MINT-426520 STRING:P49955
PaxDb:P49955 PeptideAtlas:P49955 EnsemblFungi:YMR288W GeneID:855332
KEGG:sce:YMR288W CYGD:YMR288w GeneTree:ENSGT00390000018393
NextBio:979058 Genevestigator:P49955 GermOnline:YMR288W
Uniprot:P49955
Length = 971
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 160/294 (54%), Positives = 199/294 (67%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
P + ++ + L ++ +KV+ N I VG I P Y +EWMRICF K+
Sbjct: 680 PPINQILPTLTPILRNKHRKVEVNTIKFVGLIGKLAPTYAPPKEWMRICFELLELLKSTN 739
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
K IRR+ TFG+IA+AIGPHDVL LLNNLKVQERQ RVCT VAI IVA+ C P+ VLP
Sbjct: 740 KEIRRSANATFGFIAEAIGPHDVLVALLNNLKVQERQLRVCTAVAIGIVAKVCGPYNVLP 799
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
+MNEY PE NVQNGVLKA+SF+FEYIG M KDYIY +TPLLEDAL DRDLVHRQTA
Sbjct: 800 VIMNEYTTPETNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLEDALTDRDLVHRQTASN 859
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
I H+AL G G EDA HL+N + PNIFETSPH + ++ +E L ALGP + Y+
Sbjct: 860 VITHLALNCSGTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGLEALSQALGPGLFMNYI 919
Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
GLFHPA+ VR +W++YN++Y+ QDA++ YP + D Y+ ELD VL
Sbjct: 920 WAGLFHPAKNVRKAFWRVYNNMYVMYQDAMVPFYP-VTPDNNEEYIE-ELDLVL 971
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.140 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 318 312 0.00080 116 3 11 22 0.47 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 611 (65 KB)
Total size of DFA: 218 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.32u 0.07s 24.39t Elapsed: 00:00:12
Total cpu time: 24.32u 0.07s 24.39t Elapsed: 00:00:12
Start: Thu Aug 15 16:05:55 2013 End: Thu Aug 15 16:06:07 2013