RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10471
(318 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 133 bits (336), Expect = 3e-35
Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 13/205 (6%)
Query: 16 AILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE 75
+ I ++L+ I D + +V+ I+ + +A + + +C
Sbjct: 389 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC-- 446
Query: 76 LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ----NRVCTTVAIA 131
+ L H AIR A + + + G AT++ + +R+ T I
Sbjct: 447 -MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505
Query: 132 IVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187
+++E C +LP ++ P NV+ V K+L + + V P+L
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPIL 563
Query: 188 EDALMDRDLVHRQTACATIKHMALG 212
E D+D+ + A + ++L
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLSLA 588
Score = 60.4 bits (146), Expect = 2e-10
Identities = 41/317 (12%), Positives = 98/317 (30%), Gaps = 53/317 (16%)
Query: 1 MSSDKNLGIKIVQQIAILMGCAILP-HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR 59
+ + + + + +Q+ P ++ L+ +E E+ V++ ++ + I+
Sbjct: 58 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 117
Query: 60 GPEY-----------------------------------VSAREWMRICFELLELLKAHK 84
VS+ + L
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 177
Query: 85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV----QERQNRVCTTVAIAIVAETCSPF 140
+RRA + G AK + +V + ++ ++ R+ A +A+
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 141 TVLPALMNEYRV----PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 196
+ +M R V+ V + L + +G + + P ++ + D +
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEA 295
Query: 197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE----TSPHLVQAFMDAVEGLR 252
R A +K + +++ + P I E + H+ A + GL
Sbjct: 296 EVRAAASHKVKEFC---ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352
Query: 253 VALGPVRILQYVLQGLF 269
LG ++++L
Sbjct: 353 PILGKDNTIEHLLPLFL 369
Score = 55.4 bits (133), Expect = 1e-08
Identities = 33/253 (13%), Positives = 78/253 (30%), Gaps = 18/253 (7%)
Query: 25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAH 83
+ ++ I+ + D Q V+ ++ ++ G + + L LK
Sbjct: 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE----HLLPLFLAQLKDE 375
Query: 84 KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQN----RVCTTVAIAIVAETCSP 139
+R ++ + + IG + +LL + R+ + ++A
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435
Query: 140 FT----VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD 195
+ M ++ L L E G+ + + P + D +
Sbjct: 436 EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPN 493
Query: 196 LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255
+HR T I ++ G + H+L V + ++ +++ + L
Sbjct: 494 YLHRMTTLFCINVLSE---VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550
Query: 256 GPVRILQYVLQGL 268
+ V L
Sbjct: 551 DNSTLQSEVKPIL 563
Score = 44.6 bits (105), Expect = 3e-05
Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 13/202 (6%)
Query: 76 LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL---LNNLKVQERQNRVCTTVAIAI 132
L++ L+ +R ++ IA A+G + L L + E + + +
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGT 74
Query: 133 VAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
+LP L + V E V++ +++L + + PL++
Sbjct: 75 FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVK 132
Query: 189 DALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 248
R +AC Y L Y + +P + +A +
Sbjct: 133 RLAGGDWFTSRTSACGLFSV----CYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 188
Query: 249 EGLRVALGPVRILQYVLQGLFH 270
L + ++ +
Sbjct: 189 GEFAKVLELDNVKSEIIPMFSN 210
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 76.3 bits (187), Expect = 3e-16
Identities = 42/233 (18%), Positives = 96/233 (41%), Gaps = 16/233 (6%)
Query: 28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKA 86
+++++ + L D+ V +N I ++ IA + + +L LL K+
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIP 85
Query: 87 IRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
+ + FG +AK ++ L N ++ + + ++ + A+ +A+ +P +
Sbjct: 86 LTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMAS 144
Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
+ + + + L AL+F+ E +GE Y+ P + + L D D + R +A
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI-EAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVE 203
Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP 257
+ H+A D L ++ + +TS + + + + L + G
Sbjct: 204 ALVHLATL------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGH 250
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 50.9 bits (121), Expect = 3e-07
Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 12/190 (6%)
Query: 16 AILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC 73
AI GC ++P+L L+ + L D++ V+ + R A +
Sbjct: 385 AIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444
Query: 74 FELLELLKAHKKAIRRATVNTFGYIA----KAIGPH--DVLATLLNNLKVQERQNRVCTT 127
ELL+ + K ++ A + F + + P+ +L TL+ + +N +
Sbjct: 445 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 504
Query: 128 VAIAIVAETCSPFTVLPALMNEYRVP---ELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 184
AI +A++ P + P + N+ K L L E + +
Sbjct: 505 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 564
Query: 185 PLLEDALMDR 194
P E + R
Sbjct: 565 PYCEP-VYQR 573
Score = 44.4 bits (104), Expect = 4e-05
Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 15/191 (7%)
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIA 131
E L + IR IA D+L L + L ++ A+
Sbjct: 94 ECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQ 153
Query: 132 IVAETCSPF-----------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI 180
+ E + ++P + ++ +++ + ++ + +I
Sbjct: 154 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 213
Query: 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL 240
+ L D + R+ C + + + +++ Y+ + ++
Sbjct: 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENV 272
Query: 241 VQAFMDAVEGL 251
+ L
Sbjct: 273 ALEACEFWLTL 283
Score = 35.9 bits (82), Expect = 0.016
Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 21/273 (7%)
Query: 9 IKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSARE 68
+ + + + +LPH+ N+VE + D+ + V + +A++
Sbjct: 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-------- 287
Query: 69 WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTV 128
++L H + VN Y I + +
Sbjct: 288 ------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS 341
Query: 129 AIAI-VAETCSPFTVLPALMNEYRV----PELNVQNGVLKALSFLFEYIGEMGKDYIYAV 183
A A+ V +LP ++ + E V+ + L + E + Y+ +
Sbjct: 342 AAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401
Query: 184 TPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQA 243
P L L D+ + R C T+ A V + L L+ + I +++ + +A
Sbjct: 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461
Query: 244 FMDAVEGLRVALGP--VRILQYVLQGLFHPARK 274
A L V L Y+L L K
Sbjct: 462 ACSAFATLEEEACTELVPYLAYILDTLVFAFSK 494
Score = 35.5 bits (81), Expect = 0.020
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 23/188 (12%)
Query: 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT---VLPALMNEYRVPELNVQNGVLK 163
+ + LNN+ R + I +A +LP L + + N G
Sbjct: 91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFG 150
Query: 164 ALSFLFEYIG-----EMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC 218
AL + E ++ + + P R A A + +
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVA-----CVNQFIISR 205
Query: 219 EDALTHLLNYVWPNIF--------ETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGL 268
AL ++ N+F E ++ +A + +E L P I++Y+LQ
Sbjct: 206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRT 265
Query: 269 FHPARKVR 276
V
Sbjct: 266 QDQDENVA 273
Score = 35.2 bits (80), Expect = 0.033
Identities = 29/234 (12%), Positives = 75/234 (32%), Gaps = 30/234 (12%)
Query: 15 IAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF 74
+A + LP+ + + + + + + + +Y + + I
Sbjct: 555 VATALQSGFLPYCEPVYQRC--------VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIV- 605
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
L+LL + + G I + + ++L + ++ + + R + + +
Sbjct: 606 -ALDLLSGLAEGLG-------GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 657
Query: 135 ETCSPF------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
+ C +P L ++V N A+ + +G + YI V L
Sbjct: 658 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV 717
Query: 189 DALMDRDLVH--RQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL 240
+ + + + TI G G+ C + +L + ++
Sbjct: 718 EIINRPNTPKTLLENTAITI-----GRLGYVCPQEVAPMLQQFIRPWCTSLRNI 766
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 47.0 bits (110), Expect = 6e-06
Identities = 18/179 (10%), Positives = 63/179 (35%), Gaps = 3/179 (1%)
Query: 69 WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTV 128
+ + +LE + + ++ A G I+ + L +L + + + +
Sbjct: 854 QLELKSVILEAFSSPSEEVKSAASYALGSISVG-NLPEYLPFVLQEIT-SQPKRQYLLLH 911
Query: 129 AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
++ + + S + P + N + + + + + + E +G++ + P L+
Sbjct: 912 SLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLK 971
Query: 189 DALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA 247
L+ R + +K + + + L + + + + ++ + +
Sbjct: 972 GYLISGSSYARSSVVTAVKFT-ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVT 1029
Score = 42.4 bits (98), Expect = 2e-04
Identities = 48/326 (14%), Positives = 101/326 (30%), Gaps = 39/326 (11%)
Query: 2 SSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP 61
S I+ + I+ G I +L+ ++ ++ + +++E CI R P
Sbjct: 228 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287
Query: 62 EYVSAR--EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE 119
+ V + IC + L + N ++ +
Sbjct: 288 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSW 347
Query: 120 RQNRVCTTVAIAIVAETCSPF------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 173
+ R + V T TV PAL++ ++ E NV+ V A L +
Sbjct: 348 KV-RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 406
Query: 174 EMG-------------------KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214
+ + + + L + ++ + RQ + + +
Sbjct: 407 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466
Query: 215 GFGCEDALTHLLNYVWPNIFE------TSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268
G ALT + + P I +S +L + + + P +V +
Sbjct: 467 G-----ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 521
Query: 269 FHPARKVRDVYWKIYNSLYIGGQDAL 294
V D ++KI + + Q +
Sbjct: 522 PPVVACVGDPFYKITSEALLVTQQLV 547
Score = 40.9 bits (94), Expect = 5e-04
Identities = 36/254 (14%), Positives = 81/254 (31%), Gaps = 21/254 (8%)
Query: 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW 69
++ + +G + +L + + + + ++ L I+ +
Sbjct: 871 EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKP-YV 929
Query: 70 MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA 129
I LL+ + ++ R G + I P +L L L R A
Sbjct: 930 ENIWALLLKHCECAEEGTRNVVAECLGKLTL-IDPETLLPRLKGYLISGSSYARSSVVTA 988
Query: 130 IA-IVAETCSPF-----TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 183
+ +++ P + + P+LNV+ L + + +D + V
Sbjct: 989 VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
Query: 184 TPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLV 241
P L + R I+ + +G + +D L + ++ +
Sbjct: 1049 LPHLYNETKVRK--------ELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL 1100
Query: 242 Q--AFMDAVE-GLR 252
F++ VE GL+
Sbjct: 1101 DIFEFLNHVEDGLK 1114
Score = 31.2 bits (69), Expect = 0.60
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 16 AILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE 75
+L C + + +E GL D ++ ++ R++ P V R R+
Sbjct: 1091 TLLDSCLDRLDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLD-RLVEP 1148
Query: 76 LLELLKAHKKA 86
L KA
Sbjct: 1149 LRATCTTKVKA 1159
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 43.2 bits (102), Expect = 5e-05
Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 30/219 (13%)
Query: 12 VQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMR 71
++ A K + + L D + + ++ + V
Sbjct: 6 QKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--QDAVRL----- 58
Query: 72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIA 131
+E R G I D + +LNN+ + ++ V T +
Sbjct: 59 ----AIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIES 114
Query: 132 I----VAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187
++ NV+ A+ + A PLL
Sbjct: 115 TAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAI-------SVINDK---ATIPLL 164
Query: 188 EDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLL 226
+ L D + R A A+ + + D +
Sbjct: 165 INLLKDPNGDVRNWAAF-----AININKYDNSDIRDCFV 198
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 44.0 bits (103), Expect = 5e-05
Identities = 26/204 (12%), Positives = 58/204 (28%), Gaps = 26/204 (12%)
Query: 15 IAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF 74
+A +G +L+ + L V + + I++ E +
Sbjct: 625 LAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD-AMMN 683
Query: 75 ELLELLKAHK--KAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQNRVCT 126
L +++ + ++ A ++ FG IA IG D++A + + +
Sbjct: 684 VLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEA 743
Query: 127 TVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL 186
V E ++ + V F+ +
Sbjct: 744 LDYQIKVLEAV--LDAYVGIVAGLHDKPEALFPYVGTIFQFI---------------AQV 786
Query: 187 LEDALMDRDLVHRQTACATIKHMA 210
ED + + + A I +A
Sbjct: 787 AEDPQLYSEDATSRAAVGLIGDIA 810
Score = 38.3 bits (88), Expect = 0.003
Identities = 41/293 (13%), Positives = 88/293 (30%), Gaps = 63/293 (21%)
Query: 16 AILMGCA---ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRI 72
+I+ G ++ + I + + D+ +V+E +GRIAD E + ++ +
Sbjct: 395 SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454
Query: 73 CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI 132
+ L L ++ KV + + +
Sbjct: 455 VVQAC------------------------------LIGLQDHPKVATNCSWTIINLVEQL 484
Query: 133 VAETCSPFT-----VLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP 185
T SP ++ L+ E N + AL+ + EY + + +++
Sbjct: 485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544
Query: 186 LLEDALM------------DRDLVHRQTACATIKHMALGVYGFG--CEDALTHLLNYVWP 231
+ D L + ++ + +A + E L+ +
Sbjct: 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFF- 603
Query: 232 NIFET--SPHLVQAFMDAVEGLRVALGPV------RILQYVLQGLFHPARKVR 276
+ E S + A+ L +LG Y+L+ L V
Sbjct: 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Score = 35.2 bits (80), Expect = 0.026
Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 18/150 (12%)
Query: 72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQN-RVCT 126
I L L + + I A IA PH +++ +++N ++ +N + +
Sbjct: 96 IKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRAS 155
Query: 127 TVAIAIVAETCSPF---------TVLPALMNEYRVPELN--VQNGVLKALSFLFEYIGE- 174
+A+ + E+ P +L A++ + E + V+ L AL+ +I
Sbjct: 156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215
Query: 175 -MGKDYIYAVTPLLEDALMDRDLVHRQTAC 203
+ + ++ +A D+ + A
Sbjct: 216 MEREGERNYLMQVVCEATQAEDIEVQAAAF 245
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 41.5 bits (97), Expect = 2e-04
Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 29/225 (12%)
Query: 6 NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS 65
L ++I +++ ++P L L L + + + +G I E
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKL-------LGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 66 AREWMRICFELLELLKAHKKAIRRATVNTFGYIA-------KAIGPHDVLATLLNNLKVQ 118
LL K I++ T I + + H ++ L+ L
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370
Query: 119 ERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRVPELNVQNGVLKALSFLFE 170
+ + + AI + ++ LMN + + +L A+S +F+
Sbjct: 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430
Query: 171 YIGEMGKDYIYAVT-------PLLEDALMDRDLVHRQTACATIKH 208
++G+ ++ +E + + + I+
Sbjct: 431 AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 39.6 bits (92), Expect = 0.001
Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 28/225 (12%)
Query: 6 NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS 65
N+ Q +++ +P L L +V+E I +G +A +Y
Sbjct: 157 NIASGTSAQTKVVVDADAVPLFIQL-------LYTGSVEVKEQAIWALGNVAGDSTDY-- 207
Query: 66 AREWMRICF---ELLELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNL 115
R+++ C +L L ++K ++ R T + + P L TL +
Sbjct: 208 -RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 116 KVQERQNRVCTTVAIAIVAETCSPFT-------VLPALMNEYRVPELNVQNGVLKALSFL 168
+ + V AI+ +++ + L+ VQ L+A+ +
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 169 FEYIGEMGKDYIYA-VTPLLEDALMDRDLVHRQTACATIKHMALG 212
+ I A V P L L ++ AC TI ++ G
Sbjct: 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Score = 34.2 bits (78), Expect = 0.056
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 27/207 (13%)
Query: 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
LP L L + + + + ++D E + A +RI L+ELL
Sbjct: 258 ALPTLAKL-------IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310
Query: 83 HKKAIRRATVNTFGYIA-------KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAE 135
++ + G I + + VL L L + + I+ +
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370
Query: 136 TCSPFT-------VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA-----V 183
+ ++P L+ V E + A+S G D I
Sbjct: 371 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG-GLQRPDIIRYLVSQGC 429
Query: 184 TPLLEDALMDRDLVHRQTACATIKHMA 210
L D L D + ++++
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENIL 456
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 28/160 (17%), Positives = 45/160 (28%), Gaps = 70/160 (43%)
Query: 13 QQIAIL-MGCAILPHLKNLVEIIEHGLVDEQQKVQ-------------------ENCIDL 52
Q A+ M A LK GL+ E+ +++
Sbjct: 1732 TQPALTLMEKAAFEDLK------SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 53 VGRIADRG-------PEYVSAREWMRIC----------FELLELLKAHKKAIRRAT---- 91
V RG P R + F E L+ + + + T
Sbjct: 1786 V---FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVVERVGKRTGWLV 1841
Query: 92 --VNTFGY--------IA---KAIGPHDVLATLLNNLKVQ 118
VN Y A +A+ D + +LN +K+Q
Sbjct: 1842 EIVN---YNVENQQYVAAGDLRAL---DTVTNVLNFIKLQ 1875
Score = 38.9 bits (90), Expect = 0.002
Identities = 36/234 (15%), Positives = 59/234 (25%), Gaps = 81/234 (34%)
Query: 95 F-GYIAKAIGPH------DVLATLLNNLKVQERQ----NRVCTTVAIAIVAETCSPFTVL 143
F GY++ + P VL L E N + A + +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 144 PALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAC 203
+ N + + K+ S LF +GE G + A+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAI-------------------- 159
Query: 204 ATIKHMALGVYGFG----CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR 259
FG +D L + +++T LV +
Sbjct: 160 ------------FGGQGNTDDYFEELRD-----LYQTYHVLVGDLIKFSAET-------- 194
Query: 260 ILQYVLQGLFHPARKVRDVY--------WKIYNSLYIGGQDALISA---YPRIQ 302
L L V+ W + N +D L+S P I
Sbjct: 195 -----LSELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSIPISCPLIG 242
Score = 36.2 bits (83), Expect = 0.016
Identities = 44/302 (14%), Positives = 98/302 (32%), Gaps = 104/302 (34%)
Query: 25 PHLKNLVEIIEHGL------VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC---FE 75
+ +L++ L + +KV ++++ + P ++++
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL--ENPSNTPDKDYLLSIPISCP 239
Query: 76 LLELLK-AHKKAIRRATVNTFGYIAKAIG--PHDVLATLLNNLKVQERQNRVCTTVAIAI 132
L+ +++ AH + AK +G P ++ + L + T + +
Sbjct: 240 LIGVIQLAH-----------YVVTAKLLGFTPGELRSYL-----------KGATGHSQGL 277
Query: 133 VAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM 192
V V A + + + V KA++ LF +IG +
Sbjct: 278 VT------AVAIAETDSWE----SFFVSVRKAITVLF-FIG-------------VR---- 309
Query: 193 DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL- 251
+ ++ L ED+L + E P + M ++ L
Sbjct: 310 ----CYEAYPNTSLPPSIL-------EDSLENN---------EGVP----SPMLSISNLT 345
Query: 252 RVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMK--NVY 309
+ + + L PA K ++ SL G ++ ++S P+ + N+
Sbjct: 346 QEQV--QDYVNKTNSHL--PAGK------QVEISLVNGAKNLVVSGPPQ---SLYGLNLT 392
Query: 310 LR 311
LR
Sbjct: 393 LR 394
Score = 30.8 bits (69), Expect = 0.76
Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 79/220 (35%)
Query: 85 KAIRRATVNTFGYIAK--AIGPHD--VLATLLNNLKVQERQNRVCT-------TVAIAIV 133
+ + V Y+ K + P V +L+N +N V + + + +
Sbjct: 342 SNLTQEQVQD--YVNKTNSHLPAGKQVEISLVNG-----AKNLVVSGPPQSLYGLNLTLR 394
Query: 134 AETCSPFTVLPALMNEYRVP----ELNVQNGVLKALSFLFEYIGEMGKDYIYAV--TPLL 187
P+ +++ R+P +L N FL + + + LL
Sbjct: 395 KAKA------PSGLDQSRIPFSERKLKFSN------RFLP----------VASPFHSHLL 432
Query: 188 EDA--LMDRDLVHRQTACATIKHMALGVYGF-------GCEDALTHLLNYV-------WP 231
A L+++DLV + K + + VY +++ + W
Sbjct: 433 VPASDLINKDLV-KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 232 NIFETSP-H--------------LVQAFMDAVEGLRVALG 256
+ H L D G+RV +
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDG-TGVRVIVA 530
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 37.3 bits (86), Expect = 0.002
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 31/83 (37%)
Query: 1 MSSDKNL---GIKIVQQIAILMGCAILP----HLKNLVEIIEHG-LVDEQQKVQENCID- 51
M + +++ + + I++ C P + +VE G +V C
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTC---PECKVYPPKIVERFSEGDVV---------CALC 48
Query: 52 -LV--GRIADRGPEYVSAREWMR 71
LV ++ D EW R
Sbjct: 49 GLVLSDKLVDTRS------EW-R 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 37.3 bits (87), Expect = 0.003
Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 47/209 (22%)
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
++ L+ +RRA G I G + L+ LK ++ R A+ +
Sbjct: 18 MYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKALKDEDAWVRRAAADALGQIG 73
Query: 135 ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194
+ + L+ + + V+ AL G++G + L AL D
Sbjct: 74 DE----RAVEPLIKALKDEDGWVRQSAAVAL-------GQIGDE---RAVEPLIKALKDE 119
Query: 195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254
D R A ALG G E A+ L++A D +R +
Sbjct: 120 DWFVRIAAA-----FALG--EIGDERAV---------------EPLIKALKDEDGWVRQS 157
Query: 255 -------LGPVRILQYVLQGLFHPARKVR 276
+G R+ + + R
Sbjct: 158 AADALGEIGGERVRAAMEKLAETGTGFAR 186
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 37.0 bits (86), Expect = 0.004
Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 47/209 (22%)
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
++ L+ +RRA G I G + L+ LK ++ R A+ +
Sbjct: 23 MYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKALKDEDAWVRRAAADALGQIG 78
Query: 135 ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194
+ + L+ + + V+ AL G++G + L AL D
Sbjct: 79 DE----RAVEPLIKALKDEDGWVRQSAAVAL-------GQIGDE---RAVEPLIKALKDE 124
Query: 195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254
D R A ALG G E A+ L++A D +R +
Sbjct: 125 DWFVRIAAA-----FALG--EIGDERAV---------------EPLIKALKDEDGWVRQS 162
Query: 255 -------LGPVRILQYVLQGLFHPARKVR 276
+G R+ + + R
Sbjct: 163 AADALGEIGGERVRAAMEKLAETGTGFAR 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 34/251 (13%), Positives = 68/251 (27%), Gaps = 87/251 (34%)
Query: 21 CAILPHLKNLVEIIEHGLV--------DEQQKVQENCIDLVGRIADRGPEYVSAR---EW 69
++ P + I L + V + ++ P+ + +
Sbjct: 378 LSVFP--PS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISIPSIY 432
Query: 70 MRICFELLELLKAHKKAIRR------------ATVNTFGYIAKAIGPHDVLATLLNNLKV 117
+ + +L H+ + Y IG H L N++
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------LKNIEH 486
Query: 118 QERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR---------VPELNVQNGVLKALSFL 168
ER T+ + ++R N +L L L
Sbjct: 487 PER-------------------MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 169 FEYIGEMGKDYIYAVTPLLE---DALMD------RDLVHRQTACATIKHMAL-----GVY 214
Y K YI P E +A++D +L+ + + +AL ++
Sbjct: 528 KFY-----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD--LLRIALMAEDEAIF 580
Query: 215 GFGCEDALTHL 225
E+A +
Sbjct: 581 ----EEAHKQV 587
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 35.6 bits (82), Expect = 0.019
Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 22/198 (11%)
Query: 6 NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS 65
L +I ++ + L L L+ KV + VG I
Sbjct: 218 YLSDGPNDKIQAVIDAGVCRRLVEL-------LMHNDYKVVSPALRAVGNIVTGDDIQTQ 270
Query: 66 AREWMRICFELLELLKAHKKAIRRATVNTFGYIA-------KAIGPHDVLATLLNNLKVQ 118
LL LL + K++I++ T I + + ++ L++ L+
Sbjct: 271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA 330
Query: 119 ERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRVPELNVQNGVLKALSFLFE 170
E + R AI S + L + V + + L L +
Sbjct: 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390
Query: 171 YIGEMGKDYIYAVTPLLE 188
+ K + P
Sbjct: 391 LGEQEAKRNGTGINPYCA 408
Score = 29.9 bits (67), Expect = 1.2
Identities = 47/259 (18%), Positives = 76/259 (29%), Gaps = 45/259 (17%)
Query: 27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA 86
+ VE ++ E +Q ++ IA +ELL + +
Sbjct: 66 VARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 87 IRRATVNTFGYIA-------KAIGPHDVLATLLNNLKVQERQNRVCTTVA----IAIVAE 135
++ V G IA + ++L LL Q R V +
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182
Query: 136 TCSPFTV----LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT-----PL 186
F L L V + +V ALS Y+ + D I AV
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALS----YLSDGPNDKIQAVIDAGVCRR 238
Query: 187 LEDALMDRDLVHRQTACATIKHMALG-------VYGFGCEDALTHLLNYVWP-------- 231
L + LM D A + ++ G + +L HLL+
Sbjct: 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298
Query: 232 ---NIFETSPHLVQAFMDA 247
NI + +Q +DA
Sbjct: 299 TISNITAGNRAQIQTVIDA 317
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 35.6 bits (81), Expect = 0.023
Identities = 24/188 (12%), Positives = 57/188 (30%), Gaps = 10/188 (5%)
Query: 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT-------VLPALMNEYRVPELNVQN 159
VL + ++K + + R +A + E P +P L+ + P + V++
Sbjct: 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426
Query: 160 GVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE 219
+ + E + E + +Y PLL+ + R + +L +
Sbjct: 427 TAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAA 485
Query: 220 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVY 279
D + + +VQ ++ + R + + L +
Sbjct: 486 DVADDQEEPATYCLSSSFELIVQKLLETTD--RPDGHQNNLRSSAYESLMEIVKNSAKDC 543
Query: 280 WKIYNSLY 287
+
Sbjct: 544 YPAVQKTT 551
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 33.4 bits (77), Expect = 0.028
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 26/140 (18%)
Query: 76 LLELLKAHKKAIRRATVNTFGYI-AKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
+ K +RR + +A P L L+N + R A I+
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGDEAFEP---LLESLSNEDWRIRGA------AAWIIG 67
Query: 135 ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194
+ L+ V++G ++L ++G + V +E
Sbjct: 68 NFQDE-RAVEPLIKLLEDDSGFVRSGAARSL-------EQIGGE---RVRAAMEKLAETG 116
Query: 195 DLVHRQTACATIKHMALGVY 214
R+ A L +
Sbjct: 117 TGFARKVAV-----NYLETH 131
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 33.8 bits (78), Expect = 0.052
Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 31/209 (14%)
Query: 29 NLVEIIEHGLV--------DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80
+ +I+ G + +++ + + + IA G E + A L++LL
Sbjct: 46 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105
Query: 81 KAHKKAIRRATVNTFGYIAK-------AIGPHDVLATLLNNLKVQERQNRVCTTVAIAIV 133
+ + I + + IA A+ L L+ L Q A++ +
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 134 AETCSPFT-------VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT-- 184
A + LPAL+ P + L ALS I G + AV
Sbjct: 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS----NIASGGNEQKQAVKEA 221
Query: 185 ---PLLEDALMDRDLVHRQTACATIKHMA 210
LE + ++ A ++ +
Sbjct: 222 GALEKLEQLQSHENEKIQKEAQEALEKLQ 250
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 32.3 bits (73), Expect = 0.22
Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 60/237 (25%)
Query: 28 KNLVEIIEHGLVD----------EQQKVQENCIDLVGRIADRGPEYVSAREWMRIC---F 74
KN + + + G ++ +++ + E I + + R + A+ +R+
Sbjct: 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491
Query: 75 ELLELLK-AHKKAIRRATVNTFGYIA------KAIGPHDVLATLLNNLKV--QERQNRVC 125
+++LL + +ATV +A + + L+ L Q+ Q R
Sbjct: 492 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551
Query: 126 TTVAIAIVAETCSPFT--------------------------VLPALMNEYRVPELNVQN 159
E +P + P N+Q
Sbjct: 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQR 611
Query: 160 GVLKALSFLF------EYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMA 210
L L E I G T L + L R+ A A + M+
Sbjct: 612 VAAGVLCELAQDKEAAEAIEAEG------ATAPLTELLHSRNEGVATYAAAVLFRMS 662
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM
biosynthesis, lyase; 1.84A {Homo sapiens} SCOP:
c.113.1.1
Length = 286
Score = 31.2 bits (71), Expect = 0.38
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268
+ L+H +Y IF TSP V+A +E R L+
Sbjct: 68 SEKLSHPEDYGGL-IF-TSPRAVEAAELCLEQNNKTEVWERSLKEKWNAK 115
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 31.3 bits (70), Expect = 0.45
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 16 AILMGCA---ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW-MR 71
IL G + P + + + + D V++ VGRI + PE +
Sbjct: 392 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451
Query: 72 ICFELLELLKA 82
+ L+E L A
Sbjct: 452 LLQCLIEGLSA 462
Score = 30.2 bits (67), Expect = 0.90
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFT-------VLPALMNEYRVPELNVQN 159
VL + ++K + + R +A + E P +P L+ + P + V++
Sbjct: 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426
Query: 160 GVLKALSFLFEYIGE--MGKDYIYAVTPLLEDAL 191
+ + E + E + Y+ + L + L
Sbjct: 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 29.1 bits (66), Expect = 1.4
Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 30/208 (14%)
Query: 22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK 81
+ LP + V+ + Q+ ++ + + +IA G E + A L++LL
Sbjct: 12 SELPQM---VQQLNSP----DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64
Query: 82 AHKKAIRRATVNTFGYIA-------KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
+ + I + + IA +A+ L L+ L Q A++ +A
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 135 ETCSPFTV-------LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT--- 184
+ LPAL+ P + L ALS + G + AV
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQAVKEAG 180
Query: 185 --PLLEDALMDRDLVHRQTACATIKHMA 210
LE + ++ A ++ +
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKLQ 208
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 28.4 bits (64), Expect = 3.6
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 35 EHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT 94
+ + ++ L ++ D P ++ + L+ K + + V
Sbjct: 307 IGRGELDYPEGADSIYVLARKVNDFMPAHMYNL--------TVAALERLGKKMDGSKVAM 358
Query: 95 FG 96
G
Sbjct: 359 LG 360
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural
genomics consortium, SGC, cell cycle progression,
signal transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 26.5 bits (59), Expect = 5.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 67 REWMRICFELLELLKAHKKA 86
W + C EL+ L+ + +
Sbjct: 9 SNWKKQCKELVNLIFQCEDS 28
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 26.6 bits (59), Expect = 5.7
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 61 PEYVSAREWMRICFELLELLKAHKKA 86
+ + W + C ELL L+ + +
Sbjct: 14 AQSYDIQAWKKQCEELLNLIFQCEDS 39
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich,
DNA-binding, transcription regulation; HET: MES; 1.83A
{Citrobacter freundii} PDB: 3kot_A
Length = 219
Score = 27.2 bits (61), Expect = 6.0
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 233 IFETSPHLVQAFMDAVEGLRVALGP 257
+F++S +++A A G+ VA+ P
Sbjct: 135 VFDSSVTMLEA---AQAGMGVAIAP 156
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 27.3 bits (61), Expect = 8.4
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 33 IIEHGLVDEQQKVQENCI---DLVGRIADRGPEYVSA 66
+I L D ++ V + + +L + D PE+
Sbjct: 268 LIYEDLYD-KEYVAKYTVGFEELKAHVKDFTPEWAEK 303
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 27.0 bits (59), Expect = 8.7
Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 16/211 (7%)
Query: 118 QERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN--VQNGVLKALSFLFEYIGEM 175
+E +V + + P L +Y + + N Q + AL+ L +
Sbjct: 31 KELNQLFRNSVGDISRDDNIQIYWRDPTLFAQY-ITDSNVVAQEQAIVALNSLIDAFASS 89
Query: 176 GKDYIYAVTPLLED--ALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI 233
+ +T + L+++ L + T + G + ++T + V P
Sbjct: 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSL-CGLDTSITQSVELVIPFF 148
Query: 234 FETSPHLVQAFMDAVEGLRVALGPV---------RILQYVLQGLFHPARKVRDVYWKIYN 284
+ P L+ A + V L A G +L++V Q H R VR +
Sbjct: 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208
Query: 285 SLYIGGQDALISAYPRIQNDMKNVYLRYELD 315
+Y + + +K + ++ +L
Sbjct: 209 EIYKVTGNNSDLLEEILFKKLKPIQVK-DLH 238
>2qsx_A Putative transcriptional regulator, LYSR family; the putative
transcriptional regulator, PSI-2, structure initiative,
MCSG; 1.64A {Vibrio parahaemolyticus}
Length = 218
Score = 26.8 bits (60), Expect = 9.0
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 234 FETSPHLVQAFMDAVEGLRVALGP 257
FE +A +AL P
Sbjct: 142 FEHFYLACEA---VRMEKGLALLP 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.421
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,984,425
Number of extensions: 303901
Number of successful extensions: 825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 801
Number of HSP's successfully gapped: 61
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.3 bits)