RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10471
(318 letters)
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 88.3 bits (217), Expect = 4e-20
Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 13/204 (6%)
Query: 17 ILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFEL 76
+ I ++L+ I D + +V+ I+ + +A + + +C
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW 449
Query: 77 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQN----RVCTTVAIAI 132
L H AIR A + + + G AT++ + R+ T I +
Sbjct: 450 LV---DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506
Query: 133 VAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
++E C +LP ++ P NV+ V K+L + + V P+LE
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILE 564
Query: 189 DALMDRDLVHRQTACATIKHMALG 212
D+D+ + A + ++L
Sbjct: 565 KLTQDQDVDVKYFAQEALTVLSLA 588
Score = 44.4 bits (103), Expect = 1e-05
Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 13/205 (6%)
Query: 76 LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNL-KVQERQNRVCTTVA----- 129
L++ L+ +R ++ IA A+G + LL L ++ V +A
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGT 74
Query: 130 -IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
+V +LP L + V E V++ +++L + D PL++
Sbjct: 75 FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVK 132
Query: 189 DALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 248
R +AC Y L Y + +P + +A +
Sbjct: 133 RLAGGDWFTSRTSACGLFSVC----YPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 188
Query: 249 EGLRVALGPVRILQYVLQGLFHPAR 273
L + ++ + A
Sbjct: 189 GEFAKVLELDNVKSEIIPMFSNLAS 213
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 41.7 bits (96), Expect = 1e-04
Identities = 24/246 (9%), Positives = 83/246 (33%), Gaps = 12/246 (4%)
Query: 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW 69
K V + + ++ +++ ++ + +G + ++
Sbjct: 798 KCVAALTRACPKEGPAVVGQFIQDVKN--SRSTDSIRLLALLSLGEVG----HHIDLSGQ 851
Query: 70 MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA 129
+ + +LE + + ++ A G I+ + L +L + Q ++ + +
Sbjct: 852 LELKSVILEAFSSPSEEVKSAASYALGSIS-VGNLPEYLPFVLQEITSQPKR-QYLLLHS 909
Query: 130 IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED 189
+ + + S + P + N + + + + + + E +G++ + P L+
Sbjct: 910 LKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKG 969
Query: 190 ALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVE 249
L+ R + +K + + + L + + + + ++ + A+
Sbjct: 970 YLISGSSYARSSVVTAVKFT-ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRV---ALV 1025
Query: 250 GLRVAL 255
A
Sbjct: 1026 TFNSAA 1031
Score = 37.8 bits (86), Expect = 0.002
Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 8/205 (3%)
Query: 10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW 69
++ + +G + +L + + + Q K Q + + I
Sbjct: 868 EVKSAASYALGSISVGNLPEYLPFVLQEI-TSQPKRQYLLLHSLKEIISSASVVGLKPYV 926
Query: 70 MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA 129
I LL+ + ++ R G + I P +L L L R A
Sbjct: 927 ENIWALLLKHCECAEEGTRNVVAECLGKLTL-IDPETLLPRLKGYLISGSSYARSSVVTA 985
Query: 130 IA-IVAETCSPFT-----VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 183
+ +++ P + + P+LNV+ L + + +D + V
Sbjct: 986 VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
Query: 184 TPLLEDALMDRDLVHRQTACATIKH 208
P L + R + R+ KH
Sbjct: 1046 LPHLYNETKVRKELIREVEMGPFKH 1070
Score = 28.6 bits (62), Expect = 1.4
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 15/147 (10%)
Query: 142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT 201
V+ ++ VQN +K L L + E + I L ++ R
Sbjct: 46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI---VDTLCTNMLSDKEQLRDI 102
Query: 202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIF------ETSPHLVQAFMDAVEGLRVAL 255
+ +K + + AL + + + +D + +
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162
Query: 256 GPV------RILQYVLQGLFHPARKVR 276
G + IL +L L P VR
Sbjct: 163 GGLLVNFHPSILTCLLPQLTSPRLAVR 189
Score = 28.2 bits (61), Expect = 1.8
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 16 AILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE 75
+L C + + +E GL D ++ ++ R++ P V R R+
Sbjct: 1088 TLLDSCLDRLDIFEFLNHVEDGLKDHYD-IKMLTFLMLVRLSTLCPSAVLQR-LDRLVEP 1145
Query: 76 LLELLKAHKKA 86
L KA
Sbjct: 1146 LRATCTTKVKA 1156
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 40.6 bits (93), Expect = 2e-04
Identities = 35/274 (12%), Positives = 72/274 (26%), Gaps = 36/274 (13%)
Query: 9 IKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSARE 68
+ I+ + + + + Q++Q N + ++ + + P V
Sbjct: 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA 595
Query: 69 WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQN 122
M + L K I +A ++G LL L +
Sbjct: 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655
Query: 123 RVCTTVAIAIVAETC----SPF--TVLPALMNEYRVPELN--VQNGVLKALSFLFEYIGE 174
+ IA ++ + + ++ L P ++ VL + IG
Sbjct: 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715
Query: 175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF 234
Y+ + L A + V +
Sbjct: 716 DFIPYLNDIMALCVAAQNTKPENGT--------------------LEALDYQIKVLEAVL 755
Query: 235 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268
+ +V D E L +G I Q++ Q
Sbjct: 756 DAYVGIVAGLHDKPEALFPYVGT--IFQFIAQVA 787
Score = 27.5 bits (59), Expect = 2.8
Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 18/192 (9%)
Query: 43 QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI 102
++ + A R VS +I L L + + I A IA
Sbjct: 67 NELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE 126
Query: 103 GPH----DVLATLLNNLKVQE-RQNRVCTTVAIAIVAETCSP---------FTVLPALMN 148
PH +++ +++N ++ + + +A+ + E+ P +L A++
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186
Query: 149 EYRVPELN--VQNGVLKALSFLFEYIGEMGKDYIYAVTPL--LEDALMDRDLVHRQTACA 204
+ E + V+ L AL+ +I + + + +A D+ + A
Sbjct: 187 GAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246
Query: 205 TIKHMALGVYGF 216
+ + Y F
Sbjct: 247 CLCKIMSKYYTF 258
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 40.4 bits (93), Expect = 3e-04
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 2 SSDKNLGIKIVQQIAILMGCAILPHLKN----LVEIIEHGLVDEQQKVQENCIDLVGRIA 57
S N + +I+I MG + P++ LVEII + + + EN +GR+
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRP--NTPKTLLENTAITIGRLG 777
Query: 58 DRGPEYVS 65
P+ V+
Sbjct: 778 YVCPQEVA 785
Score = 35.0 bits (79), Expect = 0.012
Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 24/237 (10%)
Query: 26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK 85
L+ ++++++ +Q + ++ P++ + +L LK+ +
Sbjct: 9 GLQQILQLLK-ESQSPDTTIQRTVQQKLEQLNQY-PDFNNY------LIFVLTKLKSEDE 60
Query: 86 AIRRATV----NTFGYIAKAIGPHD---VLATLLNNLKVQERQNRVCTTVAIAIVAETCS 138
R + N + + + LNN+ R + I +A
Sbjct: 61 PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE 120
Query: 139 PF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG-----EMGKDYIYAVTPLLEDA 190
+LP L + + N G AL + E ++ + + P
Sbjct: 121 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 180
Query: 191 LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA 247
R A A + + + ++ + P + + A
Sbjct: 181 FKHSSPKIRSHAVACVNQFIISRTQA-LMLHIDSFTENLFALAGDEEPEVRKNVCRA 236
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 35.9 bits (82), Expect = 0.005
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 2 SSDKNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVDEQQKVQENCIDLVGRIADR 59
+ NL ++ + L ++ +I + V++ +DL+ + DR
Sbjct: 332 HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR 391
Query: 60 GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-----DVLATLLNN 114
+I E+L L+ +IR V +A+ D + L+
Sbjct: 392 -------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRI 444
Query: 115 LKVQERQNRVCTTVAIAIVAETCSPFTV--LPALMNEYRVPELNVQNGVLKALSFLFEYI 172
+ + I I + + + + E ++K ++ +
Sbjct: 445 AGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHE-----NLVKVGGYI---L 496
Query: 173 GEMG 176
GE G
Sbjct: 497 GEFG 500
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 32.8 bits (73), Expect = 0.056
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 16 AILMGCA---ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE 62
IL G + P + + + + D V++ VGRI + PE
Sbjct: 391 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 440
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 28.9 bits (63), Expect = 1.1
Identities = 27/211 (12%), Positives = 65/211 (30%), Gaps = 18/211 (8%)
Query: 1 MSSDKNLGIKIVQQIAILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIAD 58
+S K+ + + ++M +L ++ + ++ Q + + V R
Sbjct: 537 KNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ 596
Query: 59 RGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH----------DVL 108
+ M + + A ++ + + + +G +
Sbjct: 597 HQDALQISDVVMASLLRMFQST-AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG 655
Query: 109 ATLLNNLKVQERQNRVCTTVAIAIVAETC-SPF--TVLPALMNEYRVPELN--VQNGVLK 163
L N + Q V + ++ PF V+ L+ ++ V+ +L
Sbjct: 656 IGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILS 715
Query: 164 ALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194
+ IG K Y+ V L+ A +
Sbjct: 716 VFGDIALAIGGEFKKYLEVVLNTLQQASQAQ 746
Score = 27.0 bits (58), Expect = 3.8
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 18/153 (11%)
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAI 130
+L L + + IA A P +++ L+ N+ + +
Sbjct: 94 YVLHTLG-TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLE 152
Query: 131 AI--VAETCSP-------FTVLPALMNEYRVPELNVQN--GVLKALSFLFEYIGEMGKDY 179
AI + + P +L A++ R E + AL E+
Sbjct: 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212
Query: 180 IY--AVTPLLEDALMDRDLVHRQTACATIKHMA 210
+ ++ +A D R A + +
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 27.7 bits (61), Expect = 1.6
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 175 MGKDYIYAVTPLLEDALMDRDLVHRQ-TACATIKHMALGVYGFGCEDALTHLLNYVWPNI 233
M D + L D+ A ++ + + G + H L V +
Sbjct: 117 MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASG---NVVHNLRTVKWHG 173
Query: 234 FETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
+ +F + V+ GPV V
Sbjct: 174 DSSPYPWATSFNEYVKANLTWQGPVEQHPLV 204
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 28.0 bits (61), Expect = 1.8
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIA 131
E++ L+ + ++ IA + P +L+ L + L +
Sbjct: 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAH 148
Query: 132 IVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYI 172
+ + P L E ++ L L + E I
Sbjct: 149 SIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQI 189
>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 114
Score = 26.3 bits (58), Expect = 2.1
Identities = 21/95 (22%), Positives = 27/95 (28%), Gaps = 23/95 (24%)
Query: 78 ELLKAHKKAIRR----ATVN-----------------TFGYIAKAIGPHDVLATLLNNLK 116
E A K+A RR A V Y A L T +
Sbjct: 2 EFFSAFKQASRREDDIAKVTCGMRVLFQPGSMQVKELALCYGGMADRTISALKT--TQKQ 59
Query: 117 VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR 151
+ + N A +AE S P M E+R
Sbjct: 60 LSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFR 94
>d2a1ka1 b.40.4.7 (A:32-241) Gene 32 protein (gp32) core
{Enterobacteria phage RB69 [TaxId: 12353]}
Length = 210
Score = 27.2 bits (60), Expect = 2.3
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 10/73 (13%)
Query: 23 ILPHLKN----LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE 78
LP + ++ HG + E C G D P + +L
Sbjct: 16 FLPAKTDDALPFAILVNHGFKKNGKWYIETCSSTHGDY-DSCPVCQYISKN-----DLYN 69
Query: 79 LLKAHKKAIRRAT 91
K ++R T
Sbjct: 70 TNKTEYSQLKRKT 82
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 26.7 bits (57), Expect = 3.6
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 8/136 (5%)
Query: 75 ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
EL LL H R ++ G D + + + R + I+
Sbjct: 23 ELFRLLDDHNSLKRISSARVLQ----LRGGQDAVRLAIEFCSDKNYIRRD---IGAFILG 75
Query: 135 ETCSPFTVLPALMNEYRVPELNVQN-GVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD 193
+ + N LN ++ V + Y + + D
Sbjct: 76 QIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD 135
Query: 194 RDLVHRQTACATIKHM 209
+ R+ I +
Sbjct: 136 KSTNVRRATAFAISVI 151
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.4 bits (58), Expect = 4.3
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 184 TPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP-NIFE 235
P L + D + + A V GF + A LL+Y W N+ E
Sbjct: 170 IPPLRERKEDIIPLANHFLKKFSRKYAKEVEGF-TKSAQELLLSYPWYGNVRE 221
>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid
(Brevicoryne brassicae) [TaxId: 69196]}
Length = 462
Score = 26.7 bits (58), Expect = 4.4
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 71 RICFELLELLKAHKKAIRRATVNTFGYIA 99
+I + L L A +A+ N GY
Sbjct: 386 KISY-LKNYLNATLQAMYEDKCNVIGYTV 413
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA
{Thermotoga maritima [TaxId: 2336]}
Length = 64
Score = 24.3 bits (53), Expect = 5.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 120 RQNRVCTTVAIAIVAETCSPFTVLPAL--MNEYRVPELNVQNGVLKALSFLF 169
+ N V + I+A P T + + MN +PEL + G L+ +
Sbjct: 1 KTNEVMKV--LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMG 50
>d1adta3 g.51.1.1 (A:386-529) Second Zn-domain of early E2A
DNA-binding protein, ADDBP {Human adenovirus type 5
[TaxId: 28285]}
Length = 144
Score = 25.1 bits (55), Expect = 7.8
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 192 MDRDLVHRQTACATIKHMALGVYGFGC 218
+D DL+ ++ A++ H AL V F C
Sbjct: 41 LDADLISDKSVLASVHHPALIV--FQC 65
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 24.7 bits (54), Expect = 9.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR 59
I P + +E L+ ++ +V E ++ VG +A+R
Sbjct: 81 IFPGMVKYIEETNVVLIGDKVRVSEIGVEGVGPVAER 117
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 25.7 bits (55), Expect = 9.2
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 67 REWMRICFELLELLKAH---KKAIRRATVN--TFGYIAKAIGPHDVLATLLNNLKVQERQ 121
RE + E+L+ L+ ++ ++R +N + +AI + + +
Sbjct: 106 REGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALAR 165
Query: 122 NR 123
R
Sbjct: 166 AR 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.421
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,196,446
Number of extensions: 55377
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 26
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)