BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10472
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 45/210 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
I +DF+L IP+G A+VG SG+GKST+++LL R YD +SG I++ G D++ L+ WLR
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 71 NVIGLINQEPVLFATSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
IG ++QEP+LF+ S+ ENI YG SSV+ E+I+ A++ANA FI FP G
Sbjct: 419 K-IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
ALD E+E LVQ AL+ GRTVL+
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
IAHRLST++NA+++ VL G+I E G+HE
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEY-GKHE 566
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 124/210 (59%), Gaps = 44/210 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+ +L + GQ +A+VGSSG GKST+V LLERFYD +G++ + G ++K L+ WLR
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSS--VSDEQIEEAAKLANAHGFISEFP-------- 120
+G+++QEP+LF S+ ENI YGD+S VS E+I AAK AN H FI P
Sbjct: 1108 Q-LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 121 --------------------------------SGALDNESEKLVQAALESACKGRTVLMI 148
+ ALD ESEK+VQ AL+ A +GRT ++I
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI 1226
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178
AHRLST+QNADLIVV+Q G++ E G H+
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEH-GTHQQ 1255
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 125/212 (58%), Gaps = 42/212 (19%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R+ ILK NL++ +GQ VA+VG+SG GKST V L++R YD G ++I G D++ ++
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP----- 120
+LR +IG+++QEPVLFAT++ ENIRYG V+ ++IE+A K ANA+ FI + P
Sbjct: 460 RYLR-EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518
Query: 121 -----------------------------------SGALDNESEKLVQAALESACKGRTV 145
+ ALD ESE +VQAAL+ A +GRT
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
++IAHRLSTV+NAD+I G IVE G H+
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQ-GNHD 609
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 124/210 (59%), Gaps = 44/210 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+ +L + GQ +A+VGSSG GKST+V LLERFYD +G++ + G ++K L+ WLR
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSS--VSDEQIEEAAKLANAHGFISEFP-------- 120
+G+++QEP+LF S+ ENI YGD+S VS E+I AAK AN H FI P
Sbjct: 1108 Q-LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 121 --------------------------------SGALDNESEKLVQAALESACKGRTVLMI 148
+ ALD ESEK+VQ AL+ A +GRT ++I
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI 1226
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178
AHRLST+QNADLIVV+Q G++ E G H+
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEH-GTHQQ 1255
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 125/212 (58%), Gaps = 42/212 (19%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R+ ILK NL++ +GQ VA+VG+SG GKST V L++R YD G ++I G D++ ++
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP----- 120
+LR +IG+++QEPVLFAT++ ENIRYG V+ ++IE+A K ANA+ FI + P
Sbjct: 460 RYLR-EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518
Query: 121 -----------------------------------SGALDNESEKLVQAALESACKGRTV 145
+ ALD ESE +VQAAL+ A +GRT
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
++IAHRLSTV+NAD+I G IVE G H+
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQ-GNHD 609
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 156 bits (395), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 121/206 (58%), Gaps = 42/206 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
IL+ NLR+ AGQ VA+VGSSG GKSTI++LL R+YDV G ITI GVD++ ++ +LR
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
NV +++QEP LF ++ ENI G ++ E++ A K+ANA FI P+G
Sbjct: 493 NV-AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE +VQ AL+ A KGRT ++IAH
Sbjct: 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
RLST++NADLI+ + GQ+VE +G H
Sbjct: 612 RLSTIRNADLIISCKNGQVVE-VGDH 636
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 115/208 (55%), Gaps = 44/208 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
ILK + + GQ +A+VG SG GKST+VALLERFYD G I I G ++K L+ R
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 71 NVIGLINQEPVLFATSVRENIRYG--DSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
I +++QEP LF S+ ENI YG SSV+ Q+EEAA+LAN H FI+E P G
Sbjct: 1154 Q-IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
ALD ESEK+VQ AL+ A +GRT ++I
Sbjct: 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQH 176
AHRL+TV NAD I V+ G I+E G H
Sbjct: 1273 AHRLNTVMNADCIAVVSNGTIIEK-GTH 1299
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 122/210 (58%), Gaps = 45/210 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
I +DF+L IP+G A+VG SG+GKST+++LL R YD +SG I++ G D++ L+ WLR
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 71 NVIGLINQEPVLFATSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
IG ++QEP+LF+ S+ ENI YG SSV+ E+I+ A++ANA FI FP G
Sbjct: 450 K-IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
ALD E+E LVQ AL+ GRTVL+
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 568
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
IAH LST++NA+++ VL G+I E G+HE
Sbjct: 569 IAHHLSTIKNANMVAVLDQGKITEY-GKHE 597
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +LKD I GQKVA+VG +G+GK+TIV LL RFYDV G I + G+D++ + + L
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGA----- 123
R + IG++ Q+ +LF+T+V+EN++YG+ +DE+I+EAAKL ++ FI P G
Sbjct: 428 RSS-IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486
Query: 124 -----------------------------------LDNESEKLVQAALESACKGRTVLMI 148
+D ++EK +QAA+ +G+T ++I
Sbjct: 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRL+T++NADLI+VL+ G+IVEM G+H+
Sbjct: 547 AHRLNTIKNADLIIVLRDGEIVEM-GKHD 574
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 115/206 (55%), Gaps = 42/206 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
ILKD NL I G+ VA VG SG GKST++ L+ RFYDV+SG I I G ++K LR
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR- 414
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
N IGL+ Q+ +LF+ +V+ENI G + +DE++ EAAK+ANAH FI P G
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE ++Q AL+ K RT L++AH
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
RLST+ +AD IVV++ G IVE G H
Sbjct: 535 RLSTITHADKIVVIENGHIVET-GTH 559
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 116/212 (54%), Gaps = 48/212 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L++ NL+IPAG+ VA+VG SG+GKSTI +L+ RFYD+ G+I + G DL+ LR N
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR-N 417
Query: 72 VIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+ L++Q LF +V NI Y + S EQIEEAA++A A FI++ +G
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE+ +QAAL+ K RT L+IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 151 RLSTVQNADLIVVLQAGQIV------EMLGQH 176
RLST++ AD IVV++ G IV E+L QH
Sbjct: 538 RLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG SG+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 83 RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIA 201
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 202 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 228
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG SG+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 77 RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 195
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 196 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 222
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG SG+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 83 RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 202 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 228
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG SG+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 79 RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 137
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 197
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 198 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 224
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 112/209 (53%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ L+D + + GQ +A+VG SG GKSTI+ LL RFYD+SSG I I G D+ + L
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R + IG++ Q+ VLF ++ +NIRYG + ++++E AA+ A H I FP G
Sbjct: 127 RSH-IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
ALD +E+ +QA+L C RT +++
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLSTV NAD I+V++ G IVE G+HE
Sbjct: 246 AHRLSTVVNADQILVIKDGCIVER-GRHE 273
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 114/208 (54%), Gaps = 43/208 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L++ NL+IPAG+ VA+VG SG+GKSTI +L+ RFYD+ G I + G DL+ LR N
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR-N 417
Query: 72 VIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+ L++Q LF +V NI Y + S EQIEEAA++A A FI++ +G
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE+ +QAAL+ K RT L+IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHEN 178
RLST++ AD IVV++ G IVE G H +
Sbjct: 538 RLSTIEKADEIVVVEDGVIVER-GTHND 564
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG +G+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 79 RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 137
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 197
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 198 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 224
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 110/208 (52%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG SG+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 77 RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 195
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 196 ARLSTVKNADRIIVMEKGKIVEQ-GKHK 222
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 110/208 (52%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG SG+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 83 RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 202 ARLSTVKNADRIIVMEKGKIVEQ-GKHK 228
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 110/211 (52%), Gaps = 43/211 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L + IP G+ VA+VG SG+GKSTI L RFYDV SG+I + G D++ T L
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 69 RGNVIGLINQEPVLFATSVRENIRY-GDSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
R + L++Q LF ++ NI Y + + EQIE+AA+ A+A FI P G
Sbjct: 416 RRH-FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
ALD ESE+ +QAAL+ K +TVL+
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178
IAHRLST++ AD I+V+ G+I+E G+H +
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIER-GRHAD 564
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 43/210 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK N IP+G A+VG +G+GKSTI LL RFYD + G+I I G ++ + +R +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIR-S 93
Query: 72 VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP----------- 120
+IG++ Q+ +LF +++ NI YG +DE++ +A K A + FI P
Sbjct: 94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKG 153
Query: 121 -----------------------------SGALDNESEKLVQAALESACKGRTVLMIAHR 151
+ +LD+++E L Q A+E K RT+++IAHR
Sbjct: 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213
Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
LST+ +A+ I++L G+IVE G H++ K
Sbjct: 214 LSTISSAESIILLNKGKIVEK-GTHKDLLK 242
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 99/201 (49%), Gaps = 42/201 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
IL+D + +A G SG GKSTI +LLERFY ++G ITI G + ++ R
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 71 NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFP--------- 120
IG ++Q+ + A ++REN+ YG + +DE + + LA A F+ P
Sbjct: 77 Q-IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 121 -------------------------------SGALDNESEKLVQAALESACKGRTVLMIA 149
+ +LD+ESE +VQ AL+S KGRT L+IA
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195
Query: 150 HRLSTVQNADLIVVLQAGQIV 170
HRLST+ +AD I ++ GQI
Sbjct: 196 HRLSTIVDADKIYFIEKGQIT 216
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 42/207 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L N + G VA++G +G+GKST++ L+ R D G + + +D++ + LRG
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+ I + QE VLF+ +++EN+++G +D++I EAAK+A H FI P G
Sbjct: 418 H-ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
++D +EK + L+ KG T +I
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
++ T AD I+VL G+ V G H+
Sbjct: 537 KIPTALLADKILVLHEGK-VAGFGTHK 562
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 44/204 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+ + G+ A+VG +G+GKST+ ALL+ Y + G + + G L D +L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 71 NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V + QEP+LF S RENI YG + + E+I A + AH FIS FP G
Sbjct: 94 QVAA-VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 123 ---------------------------------ALDNESEKLVQAALESACK--GRTVLM 147
ALD ++ VQ L + + RTVL+
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
I H+LS + A I+ L+ G + E
Sbjct: 213 ITHQLSLAERAHHILFLKEGSVCE 236
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 44/204 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+ + G+ A+VG +G+GKST+ ALL+ Y + G + + G L D +L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 71 NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSGA------ 123
V + QEP+LF S RENI YG + + E+I A + AH FIS FP G
Sbjct: 94 QVAA-VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 124 ---------------------------LDNESEKL-------VQAALESACK--GRTVLM 147
LDN + L VQ L + + RTVL+
Sbjct: 153 TGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
I +LS + A I+ L+ G + E
Sbjct: 213 ITQQLSLAERAHHILFLKEGSVCE 236
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 44/204 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+ + G+ A+VG +G+GKST+ ALL+ Y + G + + G L D +L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 71 NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSGA------ 123
V + QEP+LF S RENI YG + + E+I A + AH FIS FP G
Sbjct: 94 QVAA-VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 124 ---------------------------LDNESEKL-------VQAALESACK--GRTVLM 147
LDN + L VQ L + + RTVL+
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
I +LS + A I+ L+ G + E
Sbjct: 213 ITQQLSLAERAHHILFLKEGSVCE 236
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 44/204 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+ + G+ A+VG +G+GKST+ ALL+ Y + G + + G L + +L
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 71 NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
V + QEP +F S++ENI YG + E+I AA + AH FIS P G
Sbjct: 92 QVAA-VGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDE 150
Query: 123 ---------------------------------ALDNESEKLVQAALESACK--GRTVLM 147
ALD S+ V+ L + + R+VL+
Sbjct: 151 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL 210
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
I LS V+ AD I+ L+ G I E
Sbjct: 211 ITQHLSLVEQADHILFLEGGAIRE 234
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 40/211 (18%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW-LR 69
+L D +L + G+ + I+G+SG GK+T++ L F SG I++SG + + +R
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 70 GNVIGLINQEPVLFA-TSVRENIRY------GDSSVSDEQIEEAAKLANAHGFISEFP-- 120
+G + QE VLF +V NI Y G ++ ++IE +L +P
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHE 138
Query: 121 -SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIAH- 150
SG ALD + + ++ + +A + G++ + ++H
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
R +Q AD I V++ G+I++ HE R+
Sbjct: 199 REEALQYADRIAVMKQGRILQTASPHELYRQ 229
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
IL++ + I GQ+V ++G +G+GKST+++ R + + G I I GV + R
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR- 93
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALD 125
G+I Q+ +F+ + R+N+ +++ SD++I + A I +FP G LD
Sbjct: 94 KAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSVIEQFP-GKLD 146
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 45/203 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWL 68
LK+ NL I G+ V+I+G SG+GKST++ ++ + G + I + LD T +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 69 RGNVIGLINQE---------------PVLF----ATSVRENIRYGDSSVSDEQIEE---- 105
R + IG + Q+ P++F A S E + + ++EE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 106 ----------------AAKLANAHGFI-SEFPSGALDNES-EKLVQAALE-SACKGRTVL 146
A LAN I ++ P+GALD+++ EK++Q + + G+TV+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
++ H ++ + + I+ L+ G++
Sbjct: 201 VVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 45/203 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWL 68
LK+ NL I G+ V+I G SG+GKST + ++ + G + I + LD T +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 69 RGNVIGLINQE---------------PVLF----ATSVRENIRYGDSSVSDEQIEE---- 105
R + IG + Q+ P++F A S E + + ++EE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 106 ----------------AAKLANAHGFI-SEFPSGALDNESEKLVQAALESACK--GRTVL 146
A LAN I ++ P+GALD+++ + + L+ + G+TV+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVV 200
Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
++ H ++ + + I+ L+ G++
Sbjct: 201 VVTHDINVARFGERIIYLKDGEV 223
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 68 --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
++ N+IG+ E V+ A + E NI G+ ++ + ++A
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLAR 172
Query: 107 AKLANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTVLMIAHRLSTVQNADLIV 162
A +A ++ + P G LD +EK + ES CK +T +++ ++ ++ AD I+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 163 VLQAG 167
+L G
Sbjct: 230 ILHEG 234
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 42/202 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
T L + NL+I G+ +A++G SG+GKST++ + Y +SG I D+ L +
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---K 73
Query: 70 GNVIGLINQEPVLFA-TSVRENI------RYGDSSVSDEQIEEAAKLANAHGFISEFP-- 120
+GL+ Q L+ +V +NI R D+++ E AK+ + ++ +P
Sbjct: 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ 133
Query: 121 -SG----------ALDNESEKL----------------VQAALESACK--GRTVLMIAH- 150
SG AL E E L V+A L+ K G T + + H
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 151 RLSTVQNADLIVVLQAGQIVEM 172
+ + AD I V++ G+I+++
Sbjct: 194 QAEALAMADRIAVIREGEILQV 215
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 45/203 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWL 68
LK+ NL I G+ V+I+G SG+GKST++ ++ + G + I + LD T +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 69 RGNVIGLINQE---------------PVLF----ATSVRENIRYGDSSVSDEQIEE---- 105
R + IG + Q+ P++F A S E + + ++EE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 106 ----------------AAKLANAHGFI-SEFPSGALDNES-EKLVQAALE-SACKGRTVL 146
A LAN I ++ P+ ALD+++ EK++Q + + G+TV+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
++ H ++ + + I+ L+ G++
Sbjct: 201 VVTHDINVARFGERIIYLKDGEV 223
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 68 --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
++ N+IG+ E V+ A + E NI G+ ++ + A
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172
Query: 107 AKLANAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
A +A ++ + P G LD +EK + ++ + +T +++ ++ ++ AD I++L
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 166 AG 167
G
Sbjct: 233 EG 234
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 68 --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
++ N+IG+ E V+ A + E NI G+ ++ + A
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172
Query: 107 AKLANAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
A +A ++ + P G LD +EK + ++ + +T +++ ++ ++ AD I++L
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 166 AG 167
G
Sbjct: 233 EG 234
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNV 72
KD NL I G+ V VG SG GKST++ ++ ++SG++ I K ++ T
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTPPAERG 76
Query: 73 IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA------------------ 107
+G++ Q L+ SV EN+ +G V ++++ + A
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 108 ----KLANAHGFISEFPSGALDNESEKLVQAALESACK----------GRTVLMIAH-RL 152
++A ++E PS L +E + AAL + GRT++ + H ++
Sbjct: 137 GQRQRVAIGRTLVAE-PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 153 STVQNADLIVVLQAGQIVEM 172
+ AD IVVL AG++ ++
Sbjct: 196 EAMTLADKIVVLDAGRVAQV 215
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 68 --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
++ N+IG+ E V+ A + E NI G+ ++ + A
Sbjct: 83 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 142
Query: 107 AKLANAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
A +A ++ + P G LD +EK + ++ + +T +++ ++ ++ AD I++L
Sbjct: 143 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 202
Query: 166 AG 167
G
Sbjct: 203 EG 204
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNV 72
KD NL I G+ V VG SG GKST++ ++ ++SG++ I K ++ T
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTPPAERG 76
Query: 73 IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA------------------ 107
+G++ Q L+ SV EN+ +G V ++++ + A
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 108 ----KLANAHGFISEFPSGALDNESEKLVQAALESACK----------GRTVLMIAH-RL 152
++A ++E PS L +E + AAL + GRT++ + H ++
Sbjct: 137 GQRQRVAIGRTLVAE-PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 153 STVQNADLIVVLQAGQIVEM 172
+ AD IVVL AG++ ++
Sbjct: 196 EAMTLADKIVVLDAGRVAQV 215
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 40/190 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 71 NVIGLINQEPVLFATSV-----------------------RENIRYGDSSVSDEQIEEA- 106
I +E ++F S ++NI G+ ++ + ++A
Sbjct: 113 GTI----KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAK 168
Query: 107 -----AKLANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTVLMIAHRLSTVQN 157
A +A ++ + P G LD +EK + ES CK +T +++ ++ ++
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKK 225
Query: 158 ADLIVVLQAG 167
AD I++L G
Sbjct: 226 ADKILILHEG 235
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 48/218 (22%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR- 69
+LK N+ I G+ V ++G SG+GKST + L D G I I G++LK D +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 70 GNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA-----------NAHGF-- 115
+G++ Q LF +V NI V E+A A AH +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 116 -----------------------ISEFPSGALDNESEKLVQAALES-ACKGRTVLMIAHR 151
+ + P+ ALD E V + ++ A +G T++++ H
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
Query: 152 LSTVQN-ADLIVVLQAGQIVEM--------LGQHENTR 180
+ + D ++ + G I+E QHE T+
Sbjct: 198 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTK 235
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 48/218 (22%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR- 69
+LK N+ I G+ V ++G SG+GKST + L D G I I G++LK D +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 70 GNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA-----------NAHGF-- 115
+G++ Q LF +V NI V E+A A AH +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 116 -----------------------ISEFPSGALDNESEKLVQAALES-ACKGRTVLMIAHR 151
+ + P+ ALD E V + ++ A +G T++++ H
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
Query: 152 LSTVQN-ADLIVVLQAGQIVEM--------LGQHENTR 180
+ + D ++ + G I+E QHE T+
Sbjct: 219 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTK 256
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNV 72
KD NL I G+ V VG SG GKST++ ++ ++SG++ I K ++ T
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTPPAERG 76
Query: 73 IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA------------------ 107
+G++ Q L+ SV EN+ +G V ++++ + A
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 108 ----KLANAHGFISEFPSGALDNESEKLVQAALESACK----------GRTVLMIAH-RL 152
++A ++E PS L ++ + AAL + GRT++ + H ++
Sbjct: 137 GQRQRVAIGRTLVAE-PSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 153 STVQNADLIVVLQAGQIVEM 172
+ AD IVVL AG++ ++
Sbjct: 196 EAMTLADKIVVLDAGRVAQV 215
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 38/189 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 94
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE-AAKLA------------------- 110
I +E ++F S E RY S + Q+EE +K A
Sbjct: 95 GTI----KENIIFGVSYDE-YRY-RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 148
Query: 111 -----------NAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNA 158
+A ++ + P G LD +EK + ++ + +T +++ ++ ++ A
Sbjct: 149 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 208
Query: 159 DLIVVLQAG 167
D I++L G
Sbjct: 209 DKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 38/189 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE-AAKLA------------------- 110
I +E ++F S E RY S + Q+EE +K A
Sbjct: 83 GTI----KENIIFGVSYDE-YRY-RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136
Query: 111 -----------NAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNA 158
+A ++ + P G LD +EK + ++ + +T +++ ++ ++ A
Sbjct: 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 196
Query: 159 DLIVVLQAG 167
D I++L G
Sbjct: 197 DKILILHEG 205
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 32/186 (17%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG +W
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 68 --LRGNVIGLINQEPVLFATSV--------------RENIRYGDSSVSDEQIEEA----- 106
++ N+I ++ + + + + ++NI G+ ++ + A
Sbjct: 113 GTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 172
Query: 107 -AKLANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTVLMIAHRLSTVQNADLI 161
A +A ++ + P G LD +EK + ES CK +T +++ ++ ++ AD I
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 162 VVLQAG 167
++L G
Sbjct: 230 LILHEG 235
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R L IP G VA+VG G GKS++++ L D G++ I G
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ 74
Query: 66 TW-----LRGNVI-GLINQEP----VLFATSVRENIRYGDSSVSDEQIEEAAKLA----- 110
W LR N++ G +EP V+ A ++ ++ S E E+ L+
Sbjct: 75 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 134
Query: 111 ----------NAHGFISEFPSGALDNESEKLVQAAL---ESACKGRTVLMIAHRLSTVQN 157
NA ++ + P A+D K + + + K +T +++ H +S +
Sbjct: 135 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ 194
Query: 158 ADLIVVLQAGQIVEM 172
D+I+V+ G+I EM
Sbjct: 195 VDVIIVMSGGKISEM 209
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LK+ NL I G+ +AI GS+G+GK++++ L+ + S G I SG +W
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 68 --LRGNVIGL---------------INQEPVLFATSVRENIRYGDSSVSDEQIEEA---- 106
++ N+IG+ + Q+ FA ++N G+ V+ + A
Sbjct: 113 GTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAE--QDNTVLGEGGVTLSGGQRARISL 170
Query: 107 --AKLANAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQNADLI 161
A +A ++ + P G LD +E+ Q CK +T +++ ++ ++ AD I
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRKADKI 228
Query: 162 VVLQAG 167
++L G
Sbjct: 229 LILHQG 234
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ ++ D +L I +G+ VAI+G +G GKST++ LL + S G + G +L L
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEA 106
+ + F SV E I+ G + Q +A
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQA 121
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LK+ NL I G+ +AI GS+G+GK++++ L+ + S G I SG +W
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 68 --LRGNVIGLINQEPVLFATSVR--------------ENIRYGDSSVSDEQIEEA----- 106
++ N+I ++ + + + V+ +N G+ V+ + A
Sbjct: 113 GTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 172
Query: 107 -AKLANAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQNADLIV 162
A +A ++ + P G LD +E+ Q CK +T +++ ++ ++ AD I+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 163 VLQAG 167
+L G
Sbjct: 231 ILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LK+ NL I G+ +AI GS+G+GK++++ L+ + S G I SG +W+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLA-------------------- 110
I +E ++F S E RY + + ++ K A
Sbjct: 113 GTI----KENIIFGVSYDE-YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 111 ----------NAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN 157
+A ++ + P G LD +E+ Q CK +T +++ ++ ++
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRK 225
Query: 158 ADLIVVLQAG 167
AD I++L G
Sbjct: 226 ADKILILHQG 235
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
L + +L +PAGQ ++G+SG GKST++ + + G++ + G +L L + L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 71 -NVIGLINQE---------------PVLFATSVRENIR-----------YGDSSVS---- 99
IG+I Q P+ + ++ ++ GD S
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 100 -----DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACK--GRTVLMIAHR 151
+++ A LA N + + + ALD + + + L+ + G T+L+I H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 152 LSTVQN-ADLIVVLQAGQIVE 171
+ V+ D + V+ G+++E
Sbjct: 224 MDVVKRICDCVAVISNGELIE 244
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
L + +L +PAGQ ++G+SG GKST++ + + G++ + G +L L + L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 71 -NVIGLINQE---------------PVLFATSVRENIR-----------YGDSSVS---- 99
IG+I Q P+ + ++ ++ GD S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 140
Query: 100 -----DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACK--GRTVLMIAHR 151
+++ A LA N + + + ALD + + + L+ + G T+L+I H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200
Query: 152 LSTVQN-ADLIVVLQAGQIVE 171
+ V+ D + V+ G+++E
Sbjct: 201 MDVVKRICDCVAVISNGELIE 221
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LK+ NL I G+ +AI GS+G+GK++++ L+ + S G I SG +W+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLA-------------------- 110
I +E ++F S E RY + + ++ K A
Sbjct: 113 GTI----KENIIFGVSYDE-YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 111 ----------NAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN 157
+A ++ + P G LD +E+ Q CK +T +++ ++ ++
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRK 225
Query: 158 ADLIVVLQAG 167
AD I++L G
Sbjct: 226 ADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+LK+ NL I G+ +AI GS+G+GK++++ L+ + S G I SG +W
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 68 --LRGNVIGLINQEPVLFATSVR--------------ENIRYGDSSVSDEQIEEA----- 106
++ N+I ++ + + + V+ +N G+ V+ + A
Sbjct: 113 GTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 172
Query: 107 -AKLANAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQNADLIV 162
A +A ++ + P G LD +E+ Q CK +T +++ ++ ++ AD I+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 163 VLQAG 167
+L G
Sbjct: 231 ILHQG 235
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LKD N G+ +VG +G+GK+T++ +L ++G I + G D LR
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDG---SPADPFLLRK 81
Query: 71 NVIGLINQEPV--LFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFIS----- 117
NV G + Q P + +V E++ + D S ++I++ +L G +
Sbjct: 82 NV-GYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLN 140
Query: 118 ------------------------EFPSGALDNESEKLVQAALES-ACKGRTVLMIAHRL 152
+ P LD S++ + LES +G+ ++++ H L
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHEL 200
Query: 153 STVQNADLIVVLQAGQI 169
+ + D I+ + G I
Sbjct: 201 EYLDDMDFILHISNGTI 217
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGT 66
K IL+ +L + G+ AI+G +G+GKST+ A L Y+V+ G + G DL L
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 67 WLRGNVIGLINQEPV 81
G I + Q PV
Sbjct: 93 DRAGEGIFMAFQYPV 107
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGT 66
K IL+ +L + G+ AI+G +G+GKST+ A L Y+V+ G + G DL L
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 67 WLRGNVIGLINQEPV 81
G I + Q PV
Sbjct: 74 DRAGEGIFMAFQYPV 88
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTW 67
LK N+ I G+ AI+G +G GKST+ SSG I D K +D G
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF---DNKPIDYSRKGIM 80
Query: 68 LRGNVIGLINQEP--VLFATSVRENIRYGDSSVSDEQIEEAAKLANA 112
IG++ Q+P LF+ SV +++ +G ++ + E ++ NA
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA 127
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L + +L +PAGQ ++G+SG GKST++ + + G++ + G +L L + L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
+K +L++P GQ V ++G++G GK+T ++ + G I +G D+ + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 72 VIGLINQEPVLFAT-SVRENIRYGDSSVSDEQ 102
I L+ + +F +V EN+ G + D++
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKE 113
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L + +L++ +G+ I+G +G GK+ + L+ F+ SG I + G D+ L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP---EKH 72
Query: 72 VIGLINQEPVLFA-TSVRENIRYG 94
I + Q LF +V++N+ +G
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFG 96
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHL 63
+TILK NL +P G+ A++G +G GKST+ +L + Y V G I + G ++ L
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL 72
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 34/135 (25%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALL---------ERFYD----VSSGNITISGV 58
L + N+ I G++ I+G SG GK+T + ++ E ++D S+G + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 59 DLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYG--DSSVSDEQI----EEAAKLAN 111
D K IG++ Q L+ + ENI + + +S E+I EE AK+ +
Sbjct: 81 DRK-----------IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD 129
Query: 112 AHGFISEFP---SGA 123
H ++ FP SGA
Sbjct: 130 IHHVLNHFPRELSGA 144
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex
(Aq_297) From Aquifex Aeolicus Vf5
Length = 224
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TW 67
ILK +L + G+ V+I+G+SG+GKST++ +L + G + + G ++ + + +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 68 LRGNVIGLINQ 78
LR +G + Q
Sbjct: 79 LRNRKLGFVFQ 89
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 31/129 (24%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALL---------ERFYD----VSSGNITISGV 58
L + N+ I G++ I+G SG GK+T + ++ E ++D S+G + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 59 DLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYG--DSSVSDEQI----EEAAKLAN 111
D K IG++ Q L+ + ENI + + +S E+I EE AK+ +
Sbjct: 81 DRK-----------IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD 129
Query: 112 AHGFISEFP 120
H ++ FP
Sbjct: 130 IHHVLNHFP 138
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
++ + +I G+ V ++G SG+GK+TI+ L+ + G++ I G + L +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP---QKR 87
Query: 72 VIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP 120
+GL+ Q LF +V +N+ +G D ++ E + + + FP
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP 143
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
G ++ KTILK + +I G K + G +G GK+T++ +L + +SG + + G
Sbjct: 28 GRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 44/202 (21%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L++ +L I G+ + + G++G+GKST++ ++ + +SG++ G K G +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---GYEI 76
Query: 69 RGNVIGLINQEP--VLFATSVRENIRYG-----------------------DSSVSDEQI 103
R N IG+ Q P FA V + + + D +++
Sbjct: 77 RRN-IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 135
Query: 104 E------EAAKLANAHGFISEF-------PSGALDNESE-KLVQAALESACKGRTVLMIA 149
E ++A A + E P LD E + L++ + G+TV++I+
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 150 HRLSTVQN-ADLIVVLQAGQIV 170
H + TV N D +VVL+ G+ V
Sbjct: 196 HDIETVINHVDRVVVLEKGKKV 217
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 44/202 (21%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L++ +L I G+ + + G++G+GKST++ ++ + +SG++ G K G +
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---GYEI 78
Query: 69 RGNVIGLINQEP--VLFATSVRENIRYG-----------------------DSSVSDEQI 103
R N IG+ Q P FA V + + + D +++
Sbjct: 79 RRN-IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 137
Query: 104 E------EAAKLANAHGFISEF-------PSGALDNESE-KLVQAALESACKGRTVLMIA 149
E ++A A + E P LD E + L++ + G+TV++I+
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 150 HRLSTVQN-ADLIVVLQAGQIV 170
H + TV N D +VVL+ G+ V
Sbjct: 198 HDIETVINHVDRVVVLEKGKKV 219
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
G+ VA++G SG GK+T + +L Y +SG I V + + + +G++ Q
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE---VGMVFQNYA 85
Query: 82 LFA-TSVRENIRY 93
L+ +V ENI +
Sbjct: 86 LYPHMTVFENIAF 98
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
Length = 240
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 27 IVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-T 85
++G +G GKS + L+ G + ++G D+ L RG IG + Q+ LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-RG--IGFVPQDYALFPHL 85
Query: 86 SVRENIRYG 94
SV NI YG
Sbjct: 86 SVYRNIAYG 94
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ +++IP G VA+ G SG+GKST+V
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTI 38
LK+ ++ IP G+ V + G SG+GKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 142 GRTVLMIAHRLSTVQNADLIVVL------QAGQIV 170
G TVL+I H L ++ AD I+ L + GQIV
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIV 932
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K ILK + I G+ ++G +G GK+T + ++ SSG +T+ G
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG----------- 76
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG-----FISEFPSGA 123
NV+ +EP VR+ I Y EEA N G F++ F + +
Sbjct: 77 -KNVV----EEP----HEVRKLISYLP--------EEAGAYRNMQGIEYLRFVAGFYASS 119
Query: 124 LDNESEKLVQAALESACKGRTVLMIAHRLST 154
+E E++V+ A E A G I R+ST
Sbjct: 120 -SSEIEEMVERATEIAGLGEK---IKDRVST 146
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ +++IP G VA+ G SG+GKST+V
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTI 38
LK+ ++ IP G+ V + G SG+GKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 142 GRTVLMIAHRLSTVQNADLIVVL------QAGQIV 170
G TVL+I H L ++ AD I+ L + GQIV
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIV 630
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ +++IP G VA+ G SG+GKST+V
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTI 38
LK+ ++ IP G+ V + G SG+GKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 142 GRTVLMIAHRLSTVQNADLIVVL------QAGQIV 170
G TVL+I H L ++ AD I+ L + GQIV
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIV 932
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 51/200 (25%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP- 80
G I+G +G+GKST++ ++ F G + D+ + + L I Q P
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92
Query: 81 VLFATSVREN-----IRYGDSSVS-----------DEQIEEAAK---------------- 108
L +V EN I G+S ++ +E +E+A K
Sbjct: 93 PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 109 ----------------LANAHGFISEFP-SGALDNESEKLVQAALESACKGRTVLMIAHR 151
+ N + + P +G + + LE KG T L+I HR
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 152 LSTVQNA-DLIVVLQAGQIV 170
L V N D + V+ GQI+
Sbjct: 213 LDIVLNYIDHLYVMFNGQII 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 51/200 (25%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP- 80
G I+G +G+GKST++ ++ F G + D+ + + L I Q P
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92
Query: 81 VLFATSVREN-----IRYGDSSVS-----------DEQIEEAAK---------------- 108
L +V EN I G+S ++ +E +E+A K
Sbjct: 93 PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 109 ----------------LANAHGFISEFP-SGALDNESEKLVQAALESACKGRTVLMIAHR 151
+ N + + P +G + + LE KG T L+I HR
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 152 LSTVQNA-DLIVVLQAGQIV 170
L V N D + V+ GQI+
Sbjct: 213 LDIVLNYIDHLYVMFNGQII 232
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL 63
L++ NL + G+KV I+G +G+GK+T++ + SGNI I+G++++ +
Sbjct: 21 LENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKI 70
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 71/200 (35%), Gaps = 51/200 (25%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP- 80
G I+G +G+GKST++ ++ F G + D+ + + L I Q P
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92
Query: 81 VLFATSVRENIRYGDSSV----------------SDEQIEEAAK---------------- 108
L +V EN+ G+ +E +E+A K
Sbjct: 93 PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152
Query: 109 ----------------LANAHGFISEFP-SGALDNESEKLVQAALESACKGRTVLMIAHR 151
+ N + + P +G + + LE KG T L+I HR
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 152 LSTVQNA-DLIVVLQAGQIV 170
L V N D + V+ GQI+
Sbjct: 213 LDIVLNYIDHLYVMFNGQII 232
>pdb|2CJQ|A Chain A, Bovine Viral Diarrhea Virus Cp7-R12 Rna-Dependent Rna
Polymerase
Length = 720
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%)
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
+F T + ++R+ S V+ EQ+E A GF+ + G + + + LV+ +
Sbjct: 191 IFHTIAQPSLRHTYSDVTWEQLEAGVNRKGAAGFLEKKNVGEVLDSEKHLVEQLIRDLKT 250
Query: 142 GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
GR + + + D+ Q+G +V+
Sbjct: 251 GRKIRYYETAIPKNEKRDVSDDWQSGDLVD 280
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 0.55, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVA 40
L + ++R P G ++ G SG+GKST+V+
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTI 38
LKD ++++P V G SG+GKS++
Sbjct: 26 LKDISVKVPRDALVVFTGVSGSGKSSL 52
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY 46
LK+ ++ IP G V + G SG+GKS++V +E Y
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLV--METLY 632
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTI 38
LK+ +RIP + V I G SG+GKS++
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSL 40
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 115 FISEFPSGALDNES-EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 164
+I + P+ L E KLV+ +G TV++I H L ++NAD I+ L
Sbjct: 830 YILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDL 880
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNITISGVDLKHLDGTW 67
T L + + AG+ + +VG +G GKST++A R ++S G+I +G L+ T
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATK 70
Query: 68 LRGNVIGLINQEPVLFATSV 87
L + L Q+ FAT V
Sbjct: 71 LALHRAYLSQQQTPPFATPV 90
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNITISGVDLKHLDGTWLRGNVIGLINQ 78
AG+ + +VG +G GKST++A R ++S G+I +G L+ T L + L Q
Sbjct: 25 AGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 79 EPVLFATSV 87
+ FAT V
Sbjct: 82 QTPPFATPV 90
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport
Atp- Binding Protein
Length = 375
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56
T +KD +L I G+ + ++G SG GK+T + + + + G I I
Sbjct: 20 TAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIE 66
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
K + D N + ++A++G +G GKST++ +L
Sbjct: 680 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 713
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
K + D N + ++A++G +G GKST++ +L
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|B Chain B, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|C Chain C, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|D Chain D, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
Length = 338
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS----SGNITIS-----GVDLKHL 63
KD +L I G+KVAI+G G + L + DV+ SG+ T++ G+ + +
Sbjct: 7 KDCDLSIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADV 66
Query: 64 DGTWLRGNVIGLINQEPV---LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGF 115
+V+ ++ + L+ + N++ G A LA AHGF
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKG------------ATLAFAHGF 109
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
K + D N + ++A++G +G GKST++ +L
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLK----HLDGTWLRGNVIGLIN 77
K+ ++G+SG GKS LL RF D + N IS GVD K LDG ++ +
Sbjct: 10 KLLLIGNSGVGKS---CLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 78 QEPVLFATS 86
QE TS
Sbjct: 67 QERFRTITS 75
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNITISGVDLKHLDGTW 67
T L + + AG+ + +VG +G GKST++A R +S G+I +G L+ T
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATK 70
Query: 68 LRGNVIGLINQEPVLFATSV 87
L + L Q+ FAT V
Sbjct: 71 LALHRAYLSQQQTPPFATPV 90
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLK----HLDGTWLRGNVIGLIN 77
K+ ++G+SG GKS LL RF D + N IS GVD K LDG ++ +
Sbjct: 10 KLLLIGNSGVGKS---CLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 78 QEPVLFATS 86
QE TS
Sbjct: 67 QERFRTITS 75
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNITISGVDLKHLDGTW 67
T L + + AG+ + +VG +G GKST++A R +S G+I +G L+ T
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATK 70
Query: 68 LRGNVIGLINQEPVLFATSV 87
L + L Q+ FAT V
Sbjct: 71 LALHRAYLSQQQTPPFATPV 90
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGVDLK 61
K+ I+G SG GKS +LL RF D S IT GVD K
Sbjct: 11 KLLIIGDSGVGKS---SLLLRFADNTFSGSYITTIGVDFK 47
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLK----HLDGTWLRGNVIGLIN 77
K+ ++G+SG GKS LL RF D + N IS GVD K LDG ++ +
Sbjct: 23 KLLLIGNSGVGKS---CLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 78 QEPVLFATS 86
QE TS
Sbjct: 80 QERFRTITS 88
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTI 38
+L+ + R P Q VA+ G+ G+GKST+
Sbjct: 11 VLERLDPRQPGRQLVALSGAPGSGKSTL 38
>pdb|2H3B|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
pdb|2H3B|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
Length = 494
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 2 AGNLRRLKTILKDFNLRIPAGQKVAIVGSSGN-----GKSTI--VALLERFY 46
+GNL L+ L DF R + Q+ A +G+S + G T+ +AL++++Y
Sbjct: 183 SGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGIALIKKYY 234
>pdb|2G95|A Chain A, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G95|B Chain B, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G96|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G96|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G97|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|2G97|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|3G8E|A Chain A, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
pdb|3G8E|B Chain B, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
Length = 491
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 2 AGNLRRLKTILKDFNLRIPAGQKVAIVGSSGN-----GKSTI--VALLERFY 46
+GNL L+ L DF R + Q+ A +G+S + G T+ +AL++++Y
Sbjct: 180 SGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGIALIKKYY 231
>pdb|2H3D|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
pdb|2H3D|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
Length = 494
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 2 AGNLRRLKTILKDFNLRIPAGQKVAIVGSSGN-----GKSTI--VALLERFY 46
+GNL L+ L DF R + Q+ A +G+S + G T+ +AL++++Y
Sbjct: 183 SGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGIALIKKYY 234
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 27/170 (15%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-- 66
K +L+ + I G V G +G GK+T++ + + G I +GV + + G
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 67 WLRGNVI--GLINQEPVLFATSVRENIRYGDSSVSD--EQIE------------------ 104
+L +I I+ E L A + ++ + + D E +E
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRR 141
Query: 105 ---EAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHR 151
+ L NA ++ + P A+D +S+ V ++ K + +++I+ R
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 101 EQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIA-HRLSTVQNAD 159
E E+ AKL N G F SGA + + ++ A+ +A KG+ +L+ A +S + A
Sbjct: 47 EAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK 106
Query: 160 LI 161
+
Sbjct: 107 FL 108
>pdb|2GVL|A Chain A, Crystal Structure Of Murine Nmprtase
pdb|2GVL|B Chain B, Crystal Structure Of Murine Nmprtase
Length = 491
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 2 AGNLRRLKTILKDFNLRIPAGQKVAIVGSSGN-----GKSTI--VALLERFY 46
+GNL L+ L DF R + Q+ A +G+S + G T+ +AL++++Y
Sbjct: 180 SGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGIALIKKYY 231
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 28/182 (15%)
Query: 12 LKDFNLRIPAGQK-----VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH---- 62
L DF L + G+ + I+G +G GK+T +L G++T L +
Sbjct: 279 LGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR 338
Query: 63 ----LDGT---WLRGNVIGLINQEPVLF-ATSVRENI-RYGDSSVSD------EQIEEAA 107
DGT +L ++ F + R N+ R +S+V+D +++ AA
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAA 398
Query: 108 KLAN-AHGFISEFPSGALDNESEKLVQAALESACKGR--TVLMIAHRLSTVQN-ADLIVV 163
LA A ++ + PS LD E +V A++ + R +I H LS AD I+V
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458
Query: 164 LQ 165
+
Sbjct: 459 FK 460
>pdb|1S4F|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|C Chain C, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|D Chain D, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
Length = 601
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
+F T + +++ V+ EQ+E A GF+ + G + + + LV+ +
Sbjct: 113 IFHTIAQPTLKHTYGEVTWEQLEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKA 172
Query: 142 GRTVLMIAHRLSTVQNADLIVVLQAGQIV 170
GR + + + D+ QAG +V
Sbjct: 173 GRKIKYYETAIPKNEKRDVSDDWQAGDLV 201
>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 619
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 117 SEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176
E P+ + E + ++ A+ A +G V+M+AH T +NA V+ +A ++ G
Sbjct: 340 DELPAYGITEEEVRGLRDAV-GASQGDAVVMVAHERVTAENALREVIRRAEMAIQ--GVP 396
Query: 177 ENTRK 181
E TRK
Sbjct: 397 EETRK 401
>pdb|1S48|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 1 (Residues 71-679) From Bvdv
pdb|1S49|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 1 (Residues 71-679) From Bovine Viral Diarrhea
Virus Complexed With Gtp
Length = 609
Score = 26.6 bits (57), Expect = 8.0, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
+F T + +++ V+ EQ+E A GF+ + G + + + LV+ +
Sbjct: 121 IFHTIAQPTLKHTYGEVTWEQLEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKA 180
Query: 142 GRTVLMIAHRLSTVQNADLIVVLQAGQIV 170
GR + + + D+ QAG +V
Sbjct: 181 GRKIKYYETAIPKNEKRDVSDDWQAGDLV 209
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 26 AIVGSSGNGKSTIVALLERFYD----VSSGNITISGVDL 60
AIVG S +GKSTI+ + + + SG + G DL
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,859,046
Number of Sequences: 62578
Number of extensions: 183872
Number of successful extensions: 1148
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 190
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)