Query psy10472
Match_columns 181
No_of_seqs 292 out of 1893
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:05:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1E-46 2.2E-51 285.6 14.2 171 5-177 11-221 (240)
2 COG1125 OpuBA ABC-type proline 100.0 1.7E-44 3.7E-49 279.2 13.9 172 3-176 8-220 (309)
3 COG1135 AbcC ABC-type metal io 100.0 5.4E-44 1.2E-48 283.0 14.0 163 9-172 19-223 (339)
4 COG1136 SalX ABC-type antimicr 100.0 3.4E-43 7.3E-48 271.4 18.0 163 9-171 18-222 (226)
5 COG3842 PotA ABC-type spermidi 100.0 1.3E-43 2.7E-48 289.5 14.9 171 5-179 14-224 (352)
6 COG1120 FepC ABC-type cobalami 100.0 5.8E-43 1.3E-47 274.8 15.3 169 7-177 13-224 (258)
7 COG1116 TauB ABC-type nitrate/ 100.0 1.7E-42 3.8E-47 268.3 15.6 158 6-169 13-211 (248)
8 COG1118 CysA ABC-type sulfate/ 100.0 1.8E-42 3.9E-47 274.0 15.3 172 6-178 12-224 (345)
9 COG1127 Ttg2A ABC-type transpo 100.0 2.2E-42 4.9E-47 265.5 15.3 172 5-178 17-232 (263)
10 COG3839 MalK ABC-type sugar tr 100.0 3.7E-42 8.1E-47 279.5 16.5 164 11-178 18-220 (338)
11 COG2884 FtsE Predicted ATPase 100.0 7.5E-42 1.6E-46 254.3 15.3 163 9-172 15-218 (223)
12 COG1117 PstB ABC-type phosphat 100.0 2.8E-42 6E-47 260.9 12.3 166 8-174 19-231 (253)
13 COG2274 SunT ABC-type bacterio 100.0 9.3E-42 2E-46 301.0 16.9 169 9-179 486-694 (709)
14 COG4988 CydD ABC-type transpor 100.0 3.7E-41 8.1E-46 285.3 17.3 168 10-179 335-541 (559)
15 PRK11174 cysteine/glutathione 100.0 7.7E-41 1.7E-45 292.9 19.0 168 9-179 363-570 (588)
16 COG3638 ABC-type phosphate/pho 100.0 3.7E-41 8E-46 258.2 13.7 169 7-177 15-233 (258)
17 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.8E-40 8.3E-45 293.0 19.9 166 9-179 466-671 (686)
18 COG1131 CcmA ABC-type multidru 100.0 2.2E-40 4.7E-45 267.7 16.2 163 8-172 17-218 (293)
19 COG1122 CbiO ABC-type cobalt t 100.0 9.1E-40 2E-44 255.6 18.5 167 9-177 17-224 (235)
20 TIGR02314 ABC_MetN D-methionin 100.0 4.7E-40 1E-44 270.6 17.0 163 9-172 18-222 (343)
21 TIGR01186 proV glycine betaine 100.0 7.4E-40 1.6E-44 271.0 18.3 169 7-176 4-214 (363)
22 PRK11176 lipid transporter ATP 100.0 6.3E-40 1.4E-44 286.8 17.8 168 9-178 356-564 (582)
23 TIGR03375 type_I_sec_LssB type 100.0 9.1E-40 2E-44 290.9 18.2 169 9-179 478-686 (694)
24 PRK10790 putative multidrug tr 100.0 1.1E-39 2.4E-44 285.8 18.2 167 9-178 354-560 (592)
25 KOG0058|consensus 100.0 6E-40 1.3E-44 283.1 16.2 174 4-179 476-689 (716)
26 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-39 2.3E-44 291.2 18.0 167 9-179 492-698 (710)
27 PRK11650 ugpC glycerol-3-phosp 100.0 1.8E-39 4E-44 268.6 18.0 165 9-177 17-220 (356)
28 cd03261 ABC_Org_Solvent_Resist 100.0 2.2E-39 4.8E-44 254.3 17.6 163 9-172 13-218 (235)
29 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.3E-39 5E-44 253.5 17.5 157 10-171 18-218 (254)
30 COG4987 CydC ABC-type transpor 100.0 4.7E-40 1E-44 275.8 14.4 168 9-178 351-558 (573)
31 COG1132 MdlB ABC-type multidru 100.0 1.2E-39 2.7E-44 284.3 17.2 170 8-179 341-550 (567)
32 PRK13537 nodulation ABC transp 100.0 1.9E-39 4E-44 263.9 16.5 166 9-177 20-223 (306)
33 TIGR03265 PhnT2 putative 2-ami 100.0 2.4E-39 5.1E-44 267.7 17.3 165 9-177 17-220 (353)
34 KOG0055|consensus 100.0 1.2E-39 2.7E-44 294.3 16.4 174 4-179 361-574 (1228)
35 cd03219 ABC_Mj1267_LivG_branch 100.0 5.1E-39 1.1E-43 252.2 17.5 168 9-177 13-228 (236)
36 KOG0057|consensus 100.0 3.1E-39 6.7E-44 271.2 17.1 169 8-179 364-572 (591)
37 PRK11432 fbpC ferric transport 100.0 4.2E-39 9.1E-44 265.9 17.5 165 9-177 19-222 (351)
38 TIGR01188 drrA daunorubicin re 100.0 4E-39 8.6E-44 261.6 17.1 166 8-176 5-208 (302)
39 COG0411 LivG ABC-type branched 100.0 3.8E-40 8.1E-45 253.9 10.4 173 6-179 14-237 (250)
40 TIGR01193 bacteriocin_ABC ABC- 100.0 2.7E-39 5.9E-44 288.4 17.6 168 9-179 487-695 (708)
41 PRK13657 cyclic beta-1,2-gluca 100.0 6.1E-39 1.3E-43 281.0 18.8 168 9-178 348-555 (588)
42 TIGR00958 3a01208 Conjugate Tr 100.0 4.4E-39 9.5E-44 287.1 17.9 167 9-179 494-700 (711)
43 PRK11160 cysteine/glutathione 100.0 6.8E-39 1.5E-43 280.0 18.7 169 9-179 353-560 (574)
44 cd03224 ABC_TM1139_LivF_branch 100.0 8.9E-39 1.9E-43 248.6 17.1 168 9-177 13-217 (222)
45 COG1124 DppF ABC-type dipeptid 100.0 4.9E-39 1.1E-43 247.7 15.1 164 10-173 21-224 (252)
46 cd03218 ABC_YhbG The ABC trans 100.0 1.1E-38 2.4E-43 249.7 16.8 163 9-171 13-213 (232)
47 TIGR00960 3a0501s02 Type II (G 100.0 4.5E-39 9.7E-44 249.5 14.4 160 9-169 16-216 (216)
48 PRK09452 potA putrescine/sperm 100.0 1.2E-38 2.7E-43 264.9 17.8 164 9-176 27-229 (375)
49 cd03252 ABCC_Hemolysin The ABC 100.0 2.8E-38 6.1E-43 248.2 18.9 163 9-172 15-217 (237)
50 PRK10851 sulfate/thiosulfate t 100.0 9.1E-39 2E-43 264.2 16.7 164 9-176 15-221 (353)
51 PRK09536 btuD corrinoid ABC tr 100.0 1.4E-38 3E-43 266.4 17.9 168 8-177 15-224 (402)
52 TIGR03411 urea_trans_UrtD urea 100.0 2.3E-38 4.9E-43 249.5 18.1 164 9-172 15-223 (242)
53 cd03263 ABC_subfamily_A The AB 100.0 1.4E-38 3.1E-43 247.2 16.7 166 9-177 15-217 (220)
54 cd03226 ABC_cobalt_CbiO_domain 100.0 1.5E-38 3.2E-43 244.9 16.6 158 9-170 13-205 (205)
55 PRK13536 nodulation factor exp 100.0 1E-38 2.2E-43 262.7 16.2 166 8-176 53-256 (340)
56 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-38 2.7E-43 247.3 15.7 161 9-169 17-218 (218)
57 PRK13647 cbiO cobalt transport 100.0 2.6E-38 5.7E-43 253.6 18.0 163 9-172 18-219 (274)
58 cd03260 ABC_PstB_phosphate_tra 100.0 1.7E-38 3.7E-43 248.0 16.3 166 9-176 13-224 (227)
59 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-38 2.8E-43 277.9 17.2 168 9-178 345-553 (571)
60 PRK13637 cbiO cobalt transport 100.0 2.4E-38 5.1E-43 255.4 17.5 163 9-172 20-226 (287)
61 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-38 3.2E-43 277.8 17.7 167 9-177 353-559 (576)
62 cd03251 ABCC_MsbA MsbA is an e 100.0 4.7E-38 1E-42 246.5 18.6 165 10-176 16-220 (234)
63 TIGR03522 GldA_ABC_ATP gliding 100.0 2E-38 4.4E-43 257.4 16.9 166 8-176 14-216 (301)
64 TIGR03258 PhnT 2-aminoethylpho 100.0 1.9E-38 4.1E-43 262.9 17.0 165 9-177 18-224 (362)
65 COG4181 Predicted ABC-type tra 100.0 2.1E-38 4.7E-43 232.7 15.2 168 4-171 18-226 (228)
66 cd03256 ABC_PhnC_transporter A 100.0 2.4E-38 5.2E-43 249.0 16.6 166 9-176 14-229 (241)
67 PRK11153 metN DL-methionine tr 100.0 3.1E-38 6.7E-43 260.4 17.9 163 9-172 18-222 (343)
68 PRK13643 cbiO cobalt transport 100.0 3.7E-38 7.9E-43 254.4 17.8 166 10-177 20-229 (288)
69 PRK13650 cbiO cobalt transport 100.0 4.1E-38 8.8E-43 253.1 17.8 163 9-172 20-221 (279)
70 cd03265 ABC_DrrA DrrA is the A 100.0 3.2E-38 6.9E-43 245.5 16.5 165 9-176 13-216 (220)
71 PRK11629 lolD lipoprotein tran 100.0 5.7E-38 1.2E-42 246.1 18.0 164 9-172 22-226 (233)
72 cd03254 ABCC_Glucan_exporter_l 100.0 6.7E-38 1.5E-42 244.8 18.3 166 9-176 16-221 (229)
73 PRK10789 putative multidrug tr 100.0 3.8E-38 8.2E-43 275.1 18.7 168 9-178 328-535 (569)
74 TIGR02315 ABC_phnC phosphonate 100.0 3.6E-38 7.7E-43 248.4 16.8 166 9-176 15-230 (243)
75 cd03296 ABC_CysA_sulfate_impor 100.0 5.1E-38 1.1E-42 247.2 17.6 161 9-172 15-218 (239)
76 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.7E-38 1.5E-42 246.2 18.2 163 9-172 16-218 (238)
77 cd03259 ABC_Carb_Solutes_like 100.0 3.6E-38 7.8E-43 244.0 16.4 160 9-171 13-211 (213)
78 PRK14250 phosphate ABC transpo 100.0 5.6E-38 1.2E-42 247.4 17.7 163 9-172 16-213 (241)
79 cd03268 ABC_BcrA_bacitracin_re 100.0 3.1E-38 6.8E-43 243.5 15.9 161 8-171 12-206 (208)
80 TIGR01846 type_I_sec_HlyB type 100.0 3.6E-38 7.7E-43 280.7 18.4 168 9-178 470-677 (694)
81 PRK11000 maltose/maltodextrin 100.0 4E-38 8.8E-43 261.8 17.2 164 9-176 16-218 (369)
82 PRK11607 potG putrescine trans 100.0 4.4E-38 9.5E-43 262.0 17.3 165 9-177 32-235 (377)
83 PRK10070 glycine betaine trans 100.0 3.8E-38 8.2E-43 263.6 17.0 163 9-171 41-245 (400)
84 cd03266 ABC_NatA_sodium_export 100.0 5E-38 1.1E-42 243.9 16.4 160 10-171 19-216 (218)
85 cd03258 ABC_MetN_methionine_tr 100.0 6.4E-38 1.4E-42 245.6 16.9 165 10-176 19-225 (233)
86 PRK13651 cobalt transporter AT 100.0 7.2E-38 1.6E-42 254.4 17.8 165 10-176 21-249 (305)
87 PRK13634 cbiO cobalt transport 100.0 6.3E-38 1.4E-42 253.3 17.3 163 9-172 20-227 (290)
88 cd03289 ABCC_CFTR2 The CFTR su 100.0 1E-37 2.2E-42 250.1 18.4 166 9-178 17-222 (275)
89 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-37 3.2E-42 241.6 18.6 162 9-171 17-218 (220)
90 PRK10895 lipopolysaccharide AB 100.0 1.2E-37 2.7E-42 245.2 18.3 164 9-172 16-218 (241)
91 PRK13635 cbiO cobalt transport 100.0 7.1E-38 1.5E-42 251.7 17.2 163 9-172 20-221 (279)
92 TIGR02211 LolD_lipo_ex lipopro 100.0 5.1E-38 1.1E-42 244.3 15.9 162 9-170 18-220 (221)
93 PRK13631 cbiO cobalt transport 100.0 9.4E-38 2E-42 255.2 18.2 167 9-177 39-261 (320)
94 TIGR03410 urea_trans_UrtE urea 100.0 9E-38 2E-42 244.3 17.3 164 9-172 13-213 (230)
95 cd03294 ABC_Pro_Gly_Bertaine T 100.0 7.7E-38 1.7E-42 250.3 17.2 165 8-172 36-242 (269)
96 PLN03130 ABC transporter C fam 100.0 6E-38 1.3E-42 297.4 19.4 168 9-179 1252-1459(1622)
97 TIGR01288 nodI ATP-binding ABC 100.0 5.6E-38 1.2E-42 255.0 16.5 162 9-172 17-216 (303)
98 PRK11614 livF leucine/isoleuci 100.0 9.2E-38 2E-42 245.4 17.2 168 9-177 18-222 (237)
99 TIGR03415 ABC_choXWV_ATP choli 100.0 3.8E-38 8.2E-43 262.1 15.8 168 8-176 36-249 (382)
100 PRK13646 cbiO cobalt transport 100.0 7.5E-38 1.6E-42 252.4 16.9 163 9-172 20-227 (286)
101 PRK14269 phosphate ABC transpo 100.0 1E-37 2.2E-42 246.5 17.3 163 9-172 15-222 (246)
102 COG3840 ThiQ ABC-type thiamine 100.0 5.2E-38 1.1E-42 232.6 14.5 156 14-172 17-211 (231)
103 PLN03232 ABC transporter C fam 100.0 5.6E-38 1.2E-42 296.8 18.7 168 9-179 1249-1456(1495)
104 COG4175 ProV ABC-type proline/ 100.0 1.6E-38 3.4E-43 252.4 12.4 167 11-178 43-251 (386)
105 PRK11300 livG leucine/isoleuci 100.0 1E-37 2.2E-42 247.5 17.1 163 9-171 18-234 (255)
106 cd03264 ABC_drug_resistance_li 100.0 6.6E-38 1.4E-42 242.2 15.4 160 9-171 13-209 (211)
107 cd03253 ABCC_ATM1_transporter 100.0 2.6E-37 5.5E-42 242.6 18.8 162 9-171 14-215 (236)
108 TIGR01192 chvA glucan exporter 100.0 1.5E-37 3.3E-42 272.0 19.3 168 9-178 348-555 (585)
109 PRK13644 cbiO cobalt transport 100.0 1.5E-37 3.3E-42 249.2 17.8 162 9-171 15-215 (274)
110 cd03246 ABCC_Protease_Secretio 100.0 1.5E-37 3.3E-42 233.5 16.7 157 9-169 15-173 (173)
111 PRK10908 cell division protein 100.0 1.5E-37 3.2E-42 242.0 16.9 162 9-171 15-217 (222)
112 cd03301 ABC_MalK_N The N-termi 100.0 1E-37 2.2E-42 241.3 15.7 160 9-171 13-211 (213)
113 COG4619 ABC-type uncharacteriz 100.0 2.2E-38 4.7E-43 232.1 11.1 167 4-171 11-214 (223)
114 cd03225 ABC_cobalt_CbiO_domain 100.0 1E-37 2.3E-42 241.0 15.4 159 9-168 14-211 (211)
115 cd03292 ABC_FtsE_transporter F 100.0 1.1E-37 2.5E-42 241.1 15.7 160 9-169 14-214 (214)
116 TIGR01842 type_I_sec_PrtD type 100.0 2.2E-37 4.7E-42 269.1 19.2 169 9-179 331-540 (544)
117 TIGR02673 FtsE cell division A 100.0 1.1E-37 2.4E-42 241.3 15.5 159 9-168 15-214 (214)
118 PRK09493 glnQ glutamine ABC tr 100.0 1.4E-37 3E-42 244.8 16.2 163 9-172 14-217 (240)
119 TIGR00972 3a0107s01c2 phosphat 100.0 1.8E-37 3.9E-42 245.2 16.9 163 9-172 14-224 (247)
120 PRK11831 putative ABC transpor 100.0 1.6E-37 3.5E-42 248.5 16.8 163 9-172 20-225 (269)
121 PRK13641 cbiO cobalt transport 100.0 2E-37 4.3E-42 250.1 17.4 166 9-176 20-229 (287)
122 PRK10584 putative ABC transpor 100.0 2.3E-37 5.1E-42 241.7 17.2 162 10-171 24-226 (228)
123 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.7E-37 6E-42 242.6 17.6 162 9-172 14-213 (236)
124 PRK13636 cbiO cobalt transport 100.0 2.3E-37 5E-42 249.2 17.5 166 9-176 19-226 (283)
125 cd03244 ABCC_MRP_domain2 Domai 100.0 4.8E-37 1.1E-41 238.8 18.7 161 9-171 17-217 (221)
126 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.3E-37 4.9E-42 243.9 16.6 163 9-172 14-217 (242)
127 PRK15079 oligopeptide ABC tran 100.0 2.3E-37 5E-42 253.9 17.3 163 9-172 34-243 (331)
128 PRK10575 iron-hydroxamate tran 100.0 1.8E-37 4E-42 247.6 16.3 162 9-171 24-228 (265)
129 PRK14247 phosphate ABC transpo 100.0 4.1E-37 8.9E-42 243.5 17.8 162 9-171 16-225 (250)
130 cd03247 ABCC_cytochrome_bd The 100.0 3.6E-37 7.9E-42 232.4 16.7 160 10-171 16-176 (178)
131 PRK11231 fecE iron-dicitrate t 100.0 2.5E-37 5.5E-42 245.4 16.4 162 9-171 15-218 (255)
132 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.7E-37 1.9E-41 235.3 18.9 161 9-171 21-203 (207)
133 PRK13652 cbiO cobalt transport 100.0 3.7E-37 7.9E-42 247.4 17.4 166 9-176 17-222 (277)
134 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-37 2.4E-42 241.1 13.9 160 9-169 13-213 (213)
135 cd03293 ABC_NrtD_SsuB_transpor 100.0 4E-37 8.7E-42 239.3 17.0 158 9-172 17-215 (220)
136 cd03269 ABC_putative_ATPase Th 100.0 1.7E-37 3.7E-42 239.7 14.7 158 9-171 13-208 (210)
137 PRK14242 phosphate transporter 100.0 3.3E-37 7E-42 244.4 16.5 163 9-172 19-229 (253)
138 TIGR03873 F420-0_ABC_ATP propo 100.0 4.4E-37 9.6E-42 244.2 17.3 163 9-172 14-218 (256)
139 PRK11247 ssuB aliphatic sulfon 100.0 4.6E-37 9.9E-42 244.4 17.3 158 9-172 25-215 (257)
140 PRK10253 iron-enterobactin tra 100.0 3.7E-37 8.1E-42 245.8 16.9 166 9-176 20-228 (265)
141 PRK14267 phosphate ABC transpo 100.0 3E-37 6.6E-42 244.6 16.2 163 9-172 17-229 (253)
142 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-37 2.8E-42 233.7 13.2 161 10-172 16-214 (245)
143 TIGR00957 MRP_assoc_pro multi 100.0 3.1E-37 6.6E-42 292.1 19.0 168 9-179 1299-1506(1522)
144 cd03235 ABC_Metallic_Cations A 100.0 1.8E-37 3.8E-42 240.1 14.3 154 9-168 12-209 (213)
145 PRK11144 modC molybdate transp 100.0 5.9E-37 1.3E-41 253.5 18.4 161 14-176 16-213 (352)
146 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.2E-37 1.6E-41 236.4 17.5 155 14-171 16-209 (211)
147 TIGR03005 ectoine_ehuA ectoine 100.0 3.9E-37 8.4E-42 243.9 16.4 163 9-172 13-228 (252)
148 PTZ00265 multidrug resistance 100.0 2.4E-37 5.2E-42 291.2 17.9 170 9-179 1181-1450(1466)
149 PTZ00243 ABC transporter; Prov 100.0 4.5E-37 9.8E-42 290.9 19.4 168 9-179 1323-1531(1560)
150 PRK14259 phosphate ABC transpo 100.0 9.2E-37 2E-41 244.1 18.2 157 9-166 26-228 (269)
151 PRK10744 pstB phosphate transp 100.0 9.3E-37 2E-41 242.9 17.9 163 9-172 26-236 (260)
152 cd03228 ABCC_MRP_Like The MRP 100.0 7.7E-37 1.7E-41 229.3 16.5 155 10-168 16-171 (171)
153 PRK13633 cobalt transporter AT 100.0 5.5E-37 1.2E-41 246.7 16.6 166 9-176 23-228 (280)
154 PRK11264 putative amino-acid A 100.0 6.3E-37 1.4E-41 242.3 16.7 163 9-172 16-225 (250)
155 PRK13649 cbiO cobalt transport 100.0 7.1E-37 1.5E-41 245.9 17.3 163 9-172 20-226 (280)
156 PRK13640 cbiO cobalt transport 100.0 9E-37 2E-41 245.7 17.7 166 9-176 20-227 (282)
157 PRK14273 phosphate ABC transpo 100.0 8.6E-37 1.9E-41 242.2 17.3 166 9-176 20-233 (254)
158 PRK10619 histidine/lysine/argi 100.0 7.2E-37 1.6E-41 243.1 16.9 163 9-172 18-233 (257)
159 PRK10247 putative ABC transpor 100.0 6.8E-37 1.5E-41 238.9 16.3 160 9-169 20-217 (225)
160 PRK13632 cbiO cobalt transport 100.0 7.9E-37 1.7E-41 244.7 17.1 162 9-171 22-222 (271)
161 cd03229 ABC_Class3 This class 100.0 9.8E-37 2.1E-41 230.1 16.5 159 9-168 13-178 (178)
162 PRK13648 cbiO cobalt transport 100.0 8.1E-37 1.8E-41 244.4 16.9 162 10-172 23-223 (269)
163 TIGR01978 sufC FeS assembly AT 100.0 7.4E-37 1.6E-41 240.8 16.4 167 9-176 13-229 (243)
164 PRK14268 phosphate ABC transpo 100.0 9.1E-37 2E-41 242.7 17.0 163 9-172 25-234 (258)
165 PRK13548 hmuV hemin importer A 100.0 1.2E-36 2.7E-41 242.0 17.8 162 9-171 15-221 (258)
166 PRK14257 phosphate ABC transpo 100.0 9.8E-37 2.1E-41 250.0 17.5 168 9-178 95-310 (329)
167 cd03215 ABC_Carb_Monos_II This 100.0 1E-36 2.2E-41 230.8 16.2 159 11-169 15-182 (182)
168 PRK13642 cbiO cobalt transport 100.0 1.3E-36 2.7E-41 244.2 17.7 162 10-172 21-221 (277)
169 PRK14235 phosphate transporter 100.0 9.7E-37 2.1E-41 243.7 17.0 163 9-172 32-243 (267)
170 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-36 2.6E-41 228.7 16.4 157 9-169 13-173 (173)
171 PRK13638 cbiO cobalt transport 100.0 7.2E-37 1.6E-41 244.9 16.0 163 9-172 14-217 (271)
172 PRK13639 cbiO cobalt transport 100.0 8.3E-37 1.8E-41 245.1 16.3 166 9-176 15-221 (275)
173 cd03288 ABCC_SUR2 The SUR doma 100.0 3E-36 6.6E-41 239.6 19.0 165 9-176 34-238 (257)
174 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-36 3.6E-41 261.8 18.8 166 9-175 24-223 (510)
175 PRK11124 artP arginine transpo 100.0 1.4E-36 3E-41 239.4 16.7 163 9-172 15-222 (242)
176 cd03257 ABC_NikE_OppD_transpor 100.0 2.5E-36 5.5E-41 235.6 18.0 161 10-171 19-226 (228)
177 TIGR02857 CydD thiol reductant 100.0 8.8E-37 1.9E-41 264.4 17.0 155 9-164 335-529 (529)
178 TIGR02769 nickel_nikE nickel i 100.0 1.7E-36 3.8E-41 242.0 17.2 166 9-176 24-235 (265)
179 PRK11308 dppF dipeptide transp 100.0 1.9E-36 4E-41 248.3 17.5 163 9-172 28-236 (327)
180 COG1137 YhbG ABC-type (unclass 100.0 5.2E-38 1.1E-42 235.6 7.5 172 6-178 14-225 (243)
181 COG1129 MglA ABC-type sugar tr 100.0 2.2E-36 4.8E-41 255.2 18.2 171 4-174 16-228 (500)
182 PRK14274 phosphate ABC transpo 100.0 2.8E-36 6.1E-41 239.9 17.8 166 9-176 25-238 (259)
183 KOG0055|consensus 100.0 7.5E-37 1.6E-41 276.3 16.3 174 4-179 998-1211(1228)
184 cd03248 ABCC_TAP TAP, the Tran 100.0 1.5E-36 3.2E-41 236.9 15.9 159 10-169 28-226 (226)
185 PRK14248 phosphate ABC transpo 100.0 2.4E-36 5.2E-41 241.5 16.9 163 9-172 34-244 (268)
186 PRK14270 phosphate ABC transpo 100.0 2.3E-36 5.1E-41 239.3 16.7 163 9-172 17-227 (251)
187 COG0410 LivF ABC-type branched 100.0 2.3E-36 5E-41 231.4 15.9 171 7-178 14-223 (237)
188 PRK14237 phosphate transporter 100.0 3.8E-36 8.2E-41 240.3 18.0 164 8-172 32-243 (267)
189 PRK13645 cbiO cobalt transport 100.0 2.9E-36 6.2E-41 243.5 17.4 162 10-172 25-232 (289)
190 PRK09700 D-allose transporter 100.0 1.8E-36 4E-41 261.5 17.2 163 9-171 18-225 (510)
191 TIGR01277 thiQ thiamine ABC tr 100.0 4.6E-36 9.9E-41 232.3 17.6 159 10-171 12-209 (213)
192 TIGR02142 modC_ABC molybdenum 100.0 4.3E-36 9.3E-41 248.6 18.5 158 14-172 15-213 (354)
193 PRK14251 phosphate ABC transpo 100.0 2.5E-36 5.4E-41 239.1 16.4 163 9-172 17-227 (251)
194 PRK10762 D-ribose transporter 100.0 3.4E-36 7.4E-41 259.3 18.5 164 9-172 17-222 (501)
195 PRK14240 phosphate transporter 100.0 4E-36 8.7E-41 237.8 17.4 163 9-172 16-226 (250)
196 PRK15093 antimicrobial peptide 100.0 2.1E-36 4.6E-41 248.3 16.4 164 9-172 20-240 (330)
197 COG3845 ABC-type uncharacteriz 100.0 1.8E-36 3.8E-41 252.3 16.0 171 4-174 12-223 (501)
198 TIGR03740 galliderm_ABC gallid 100.0 3.9E-36 8.5E-41 234.2 16.9 159 9-172 13-205 (223)
199 PRK14244 phosphate ABC transpo 100.0 2E-36 4.3E-41 239.8 15.5 163 9-172 18-229 (251)
200 PRK11022 dppD dipeptide transp 100.0 3.3E-36 7.1E-41 246.8 17.2 164 9-172 20-235 (326)
201 PRK14245 phosphate ABC transpo 100.0 2.3E-36 5E-41 239.2 15.8 163 9-172 16-226 (250)
202 PRK14253 phosphate ABC transpo 100.0 5.1E-36 1.1E-40 237.1 17.7 164 8-172 15-225 (249)
203 PRK15112 antimicrobial peptide 100.0 5E-36 1.1E-40 239.6 17.7 162 9-171 26-230 (267)
204 PRK11248 tauB taurine transpor 100.0 5.3E-36 1.2E-40 238.0 17.5 158 9-172 14-212 (255)
205 PRK14249 phosphate ABC transpo 100.0 6.5E-36 1.4E-40 236.8 17.9 163 9-172 17-227 (251)
206 PRK10771 thiQ thiamine transpo 100.0 5.8E-36 1.3E-40 234.5 17.3 160 13-176 16-214 (232)
207 PRK09473 oppD oligopeptide tra 100.0 3.6E-36 7.8E-41 246.8 16.8 167 9-176 29-246 (330)
208 PRK13549 xylose transporter AT 100.0 4.8E-36 1E-40 258.7 18.3 164 9-172 18-224 (506)
209 PRK14262 phosphate ABC transpo 100.0 4.1E-36 8.9E-41 237.7 16.4 163 9-172 16-226 (250)
210 PRK14261 phosphate ABC transpo 100.0 6E-36 1.3E-40 237.3 17.3 163 8-171 18-228 (253)
211 PRK14239 phosphate transporter 100.0 4.9E-36 1.1E-40 237.5 16.6 163 9-172 18-228 (252)
212 PRK14238 phosphate transporter 100.0 6.8E-36 1.5E-40 239.3 17.6 163 9-172 37-247 (271)
213 PRK09984 phosphonate/organopho 100.0 4.2E-36 9.1E-41 239.3 16.1 164 8-172 16-234 (262)
214 COG4152 ABC-type uncharacteriz 100.0 5.8E-37 1.3E-41 236.1 10.6 164 3-171 9-210 (300)
215 PRK14256 phosphate ABC transpo 100.0 7.6E-36 1.7E-40 236.5 17.3 163 9-172 17-228 (252)
216 TIGR02982 heterocyst_DevA ABC 100.0 4.5E-36 9.7E-41 233.5 15.6 160 9-169 18-219 (220)
217 COG4559 ABC-type hemin transpo 100.0 3E-36 6.6E-41 227.9 14.0 169 8-178 13-227 (259)
218 cd03300 ABC_PotA_N PotA is an 100.0 5.1E-36 1.1E-40 234.9 15.8 161 9-172 13-212 (232)
219 PRK14241 phosphate transporter 100.0 6.7E-36 1.5E-40 237.7 16.6 166 9-176 17-237 (258)
220 TIGR00968 3a0106s01 sulfate AB 100.0 1.2E-35 2.6E-40 233.6 17.8 161 9-172 13-212 (237)
221 TIGR01271 CFTR_protein cystic 100.0 6.8E-36 1.5E-40 282.5 19.2 167 9-179 1232-1438(1490)
222 PRK14263 phosphate ABC transpo 100.0 1.2E-35 2.7E-40 236.6 17.7 166 9-176 21-240 (261)
223 PRK10982 galactose/methyl gala 100.0 1.2E-35 2.6E-40 255.4 18.8 164 9-172 11-215 (491)
224 cd03267 ABC_NatA_like Similar 100.0 1.1E-35 2.3E-40 233.8 16.9 163 7-171 32-234 (236)
225 cd03299 ABC_ModC_like Archeal 100.0 1.2E-35 2.5E-40 233.3 16.9 160 10-172 13-211 (235)
226 COG0444 DppD ABC-type dipeptid 100.0 6.3E-36 1.4E-40 239.0 15.4 167 9-176 18-238 (316)
227 PRK14243 phosphate transporter 100.0 1.3E-35 2.8E-40 236.8 17.2 166 9-176 23-243 (264)
228 PRK14275 phosphate ABC transpo 100.0 8.6E-36 1.9E-40 240.4 16.2 163 9-172 52-262 (286)
229 PRK14271 phosphate ABC transpo 100.0 1.2E-35 2.6E-40 238.5 16.6 163 9-172 34-243 (276)
230 PRK14236 phosphate transporter 100.0 1.4E-35 3.1E-40 237.6 16.9 163 9-172 38-248 (272)
231 TIGR02868 CydC thiol reductant 100.0 4.6E-36 1E-40 259.9 15.1 142 9-152 348-529 (529)
232 PRK14272 phosphate ABC transpo 100.0 1.7E-35 3.7E-40 234.4 17.1 163 9-172 17-228 (252)
233 TIGR03608 L_ocin_972_ABC putat 100.0 5.9E-36 1.3E-40 230.3 13.9 157 8-164 10-206 (206)
234 TIGR01184 ntrCD nitrate transp 100.0 1.2E-35 2.7E-40 232.6 15.9 154 12-171 1-195 (230)
235 PRK11288 araG L-arabinose tran 100.0 1.9E-35 4.1E-40 254.7 18.6 163 9-171 17-220 (501)
236 cd03297 ABC_ModC_molybdenum_tr 100.0 1.4E-35 3.1E-40 229.6 15.8 156 14-171 16-212 (214)
237 TIGR02770 nickel_nikD nickel i 100.0 1.8E-35 3.9E-40 231.5 16.2 159 11-172 1-207 (230)
238 PRK11701 phnK phosphonate C-P 100.0 1.9E-35 4.1E-40 235.1 16.4 164 9-172 19-233 (258)
239 PRK14254 phosphate ABC transpo 100.0 2.6E-35 5.6E-40 237.5 17.2 163 9-172 52-261 (285)
240 PRK14260 phosphate ABC transpo 100.0 2.5E-35 5.4E-40 234.6 16.9 166 9-176 20-238 (259)
241 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.8E-35 1E-39 224.7 17.7 164 9-172 13-186 (200)
242 PRK13547 hmuV hemin importer A 100.0 3.7E-35 8E-40 235.2 17.7 163 9-172 14-236 (272)
243 PRK14265 phosphate ABC transpo 100.0 4E-35 8.7E-40 235.2 17.6 166 9-176 33-253 (274)
244 COG4618 ArpD ABC-type protease 100.0 6.3E-36 1.4E-40 249.5 13.2 169 8-178 348-557 (580)
245 PRK14255 phosphate ABC transpo 100.0 3E-35 6.4E-40 233.1 16.4 163 9-172 18-228 (252)
246 PRK03695 vitamin B12-transport 100.0 1.1E-34 2.3E-39 229.7 19.4 161 10-172 10-214 (248)
247 cd03213 ABCG_EPDR ABCG transpo 100.0 4.9E-35 1.1E-39 223.8 16.7 159 9-171 22-192 (194)
248 PRK14252 phosphate ABC transpo 100.0 4.7E-35 1E-39 233.7 17.0 163 9-172 29-241 (265)
249 TIGR02633 xylG D-xylose ABC tr 100.0 3.8E-35 8.2E-40 252.7 17.6 164 9-172 14-222 (500)
250 cd03234 ABCG_White The White s 100.0 5.8E-35 1.3E-39 228.1 17.0 160 8-171 19-224 (226)
251 cd03232 ABC_PDR_domain2 The pl 100.0 5.5E-35 1.2E-39 223.1 16.5 158 9-171 20-190 (192)
252 PRK14266 phosphate ABC transpo 100.0 7.3E-35 1.6E-39 230.6 17.5 163 9-172 16-226 (250)
253 PRK14258 phosphate ABC transpo 100.0 4.5E-35 9.7E-40 233.4 16.2 166 9-176 20-240 (261)
254 PRK10261 glutathione transport 100.0 3E-35 6.5E-40 259.1 16.5 163 9-172 337-545 (623)
255 PRK14246 phosphate ABC transpo 100.0 5.8E-35 1.3E-39 232.3 16.4 165 7-172 21-233 (257)
256 CHL00131 ycf16 sulfate ABC tra 100.0 9.4E-35 2E-39 230.1 17.3 167 9-176 20-236 (252)
257 PRK09700 D-allose transporter 100.0 6.6E-35 1.4E-39 251.8 17.6 162 10-172 277-490 (510)
258 PRK10522 multidrug transporter 100.0 6.5E-35 1.4E-39 253.8 17.6 163 9-176 336-534 (547)
259 cd03290 ABCC_SUR1_N The SUR do 100.0 1.6E-34 3.4E-39 224.4 17.5 159 9-168 14-218 (218)
260 PRK10419 nikE nickel transport 100.0 9.6E-35 2.1E-39 232.3 16.2 163 9-172 25-233 (268)
261 cd03231 ABC_CcmA_heme_exporter 100.0 1.3E-34 2.8E-39 222.4 16.3 155 8-164 12-198 (201)
262 PRK15056 manganese/iron transp 100.0 1.2E-34 2.6E-39 232.2 16.8 158 9-171 20-221 (272)
263 PRK14264 phosphate ABC transpo 100.0 1.4E-34 2.9E-39 235.4 17.3 166 9-176 58-284 (305)
264 cd03216 ABC_Carb_Monos_I This 100.0 1.9E-34 4.1E-39 214.9 16.2 147 9-171 13-162 (163)
265 PRK10418 nikD nickel transport 100.0 2.8E-34 6E-39 227.9 18.0 161 9-172 16-222 (254)
266 cd03250 ABCC_MRP_domain1 Domai 100.0 2.3E-34 4.9E-39 221.4 16.9 144 10-168 19-204 (204)
267 TIGR01194 cyc_pep_trnsptr cycl 100.0 1E-34 2.3E-39 252.8 16.9 159 10-172 356-551 (555)
268 PRK13549 xylose transporter AT 100.0 1.5E-34 3.2E-39 249.4 17.2 164 9-172 275-486 (506)
269 TIGR02323 CP_lyasePhnK phospho 100.0 1.8E-34 4E-39 228.7 16.2 164 9-172 16-230 (253)
270 KOG0056|consensus 100.0 1.6E-35 3.4E-40 246.6 10.4 171 7-179 549-759 (790)
271 COG1123 ATPase components of v 100.0 1.2E-34 2.6E-39 246.2 16.0 167 8-177 303-515 (539)
272 PRK10762 D-ribose transporter 100.0 3.1E-34 6.7E-39 247.2 18.3 163 10-172 266-476 (501)
273 PRK11288 araG L-arabinose tran 100.0 2.7E-34 5.8E-39 247.6 17.8 163 10-172 267-477 (501)
274 COG4604 CeuD ABC-type enteroch 100.0 5.9E-35 1.3E-39 218.9 11.5 171 5-177 10-221 (252)
275 PRK13538 cytochrome c biogenes 100.0 1.6E-34 3.5E-39 222.4 14.3 154 9-164 14-202 (204)
276 cd03233 ABC_PDR_domain1 The pl 100.0 7.8E-34 1.7E-38 218.4 17.8 163 7-171 18-200 (202)
277 PTZ00265 multidrug resistance 100.0 2E-34 4.4E-39 271.5 17.5 158 9-167 398-655 (1466)
278 PRK10938 putative molybdenum t 100.0 1.9E-34 4.1E-39 247.8 15.7 161 9-172 16-216 (490)
279 PRK10261 glutathione transport 100.0 1.2E-34 2.5E-39 255.4 14.5 163 9-171 29-249 (623)
280 TIGR02633 xylG D-xylose ABC tr 100.0 3.4E-34 7.5E-39 246.8 17.1 163 9-172 273-484 (500)
281 TIGR01166 cbiO cobalt transpor 100.0 2.2E-34 4.8E-39 219.2 14.0 146 9-155 5-190 (190)
282 PRK15134 microcin C ABC transp 100.0 2.9E-34 6.3E-39 248.8 16.3 162 9-172 299-507 (529)
283 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-33 2.8E-38 211.0 17.4 146 9-168 14-164 (166)
284 PRK15134 microcin C ABC transp 100.0 5.5E-34 1.2E-38 247.1 17.0 164 9-172 22-238 (529)
285 PRK15439 autoinducer 2 ABC tra 100.0 6E-34 1.3E-38 245.9 17.0 162 11-172 278-484 (510)
286 PRK13543 cytochrome c biogenes 100.0 6.3E-34 1.4E-38 220.6 15.4 154 9-166 24-212 (214)
287 COG4598 HisP ABC-type histidin 100.0 1.3E-34 2.8E-39 214.6 10.7 172 6-179 16-239 (256)
288 PRK09580 sufC cysteine desulfu 100.0 1.3E-33 2.7E-38 223.1 16.7 167 9-176 14-230 (248)
289 PRK13540 cytochrome c biogenes 100.0 4.9E-34 1.1E-38 219.1 13.9 152 9-162 14-197 (200)
290 TIGR02324 CP_lyasePhnL phospho 100.0 5.1E-34 1.1E-38 222.3 14.2 156 9-164 21-222 (224)
291 KOG0054|consensus 100.0 5.2E-34 1.1E-38 262.3 15.9 173 3-178 1147-1359(1381)
292 COG4525 TauB ABC-type taurine 100.0 6.2E-34 1.3E-38 213.2 13.3 160 9-174 18-218 (259)
293 TIGR03771 anch_rpt_ABC anchore 100.0 1.3E-33 2.7E-38 220.3 15.6 148 17-171 1-192 (223)
294 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.4E-33 7.4E-38 224.7 18.5 151 9-175 50-241 (282)
295 PRK09544 znuC high-affinity zi 100.0 2.2E-33 4.9E-38 222.5 17.1 149 9-171 17-200 (251)
296 TIGR01257 rim_protein retinal- 100.0 1.5E-33 3.3E-38 268.4 18.1 166 9-177 943-1145(2272)
297 COG1123 ATPase components of v 100.0 1.5E-33 3.2E-38 239.7 15.5 167 9-176 22-239 (539)
298 cd03214 ABC_Iron-Siderophores_ 100.0 1.4E-33 3.1E-38 213.2 13.2 159 9-171 12-178 (180)
299 COG4148 ModC ABC-type molybdat 100.0 1.6E-33 3.4E-38 220.8 12.4 162 14-177 16-214 (352)
300 TIGR01257 rim_protein retinal- 100.0 3.5E-33 7.5E-38 265.9 17.2 166 9-177 1952-2155(2272)
301 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-33 6.8E-38 241.9 15.4 167 9-177 297-513 (520)
302 TIGR01189 ccmA heme ABC export 100.0 3.6E-33 7.7E-38 213.9 13.8 152 9-163 13-197 (198)
303 TIGR03269 met_CoM_red_A2 methy 100.0 2.5E-33 5.5E-38 242.5 14.4 162 9-171 13-249 (520)
304 PRK13539 cytochrome c biogenes 100.0 6.4E-33 1.4E-37 214.0 15.0 153 9-166 15-200 (207)
305 PRK10982 galactose/methyl gala 100.0 1.6E-32 3.4E-37 236.0 18.0 164 9-172 261-472 (491)
306 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.6E-33 1.9E-37 215.7 14.9 151 8-171 34-222 (224)
307 PRK10535 macrolide transporter 100.0 1.3E-32 2.8E-37 243.2 17.4 164 9-172 21-224 (648)
308 PLN03211 ABC transporter G-25; 100.0 8.9E-33 1.9E-37 244.2 16.0 164 8-177 80-292 (659)
309 PRK13546 teichoic acids export 100.0 3.2E-32 7E-37 217.3 15.8 153 9-176 37-227 (264)
310 PRK15064 ABC transporter ATP-b 100.0 2.3E-32 5E-37 237.0 16.0 154 8-175 13-236 (530)
311 COG0396 sufC Cysteine desulfur 100.0 3.3E-32 7.1E-37 208.2 14.4 167 9-176 17-229 (251)
312 PRK11819 putative ABC transpor 100.0 5.3E-32 1.1E-36 235.9 17.3 153 9-175 20-244 (556)
313 TIGR01187 potA spermidine/putr 100.0 4.8E-32 1E-36 222.2 15.3 143 27-172 1-182 (325)
314 COG5265 ATM1 ABC-type transpor 100.0 8.1E-33 1.8E-37 226.7 10.6 170 8-179 275-484 (497)
315 PRK15064 ABC transporter ATP-b 100.0 1.1E-31 2.3E-36 232.8 17.6 155 9-177 332-521 (530)
316 COG4674 Uncharacterized ABC-ty 100.0 4.4E-32 9.5E-37 203.1 11.5 164 9-172 18-227 (249)
317 PRK13541 cytochrome c biogenes 100.0 7.3E-32 1.6E-36 206.2 12.9 146 12-162 16-193 (195)
318 PLN03130 ABC transporter C fam 100.0 1.3E-31 2.8E-36 254.5 17.4 153 9-177 630-824 (1622)
319 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-31 3.8E-36 232.5 16.8 154 9-176 18-243 (552)
320 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-31 2.6E-36 236.1 15.7 165 8-177 37-252 (617)
321 PRK15177 Vi polysaccharide exp 100.0 2.1E-31 4.5E-36 206.5 15.2 149 10-172 1-184 (213)
322 PLN03232 ABC transporter C fam 100.0 1.4E-31 3E-36 253.5 17.0 155 9-178 630-825 (1495)
323 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.3E-31 4.9E-36 210.4 15.6 148 9-169 7-194 (246)
324 COG1101 PhnK ABC-type uncharac 100.0 6.3E-32 1.4E-36 204.9 11.5 165 8-173 18-231 (263)
325 COG4172 ABC-type uncharacteriz 100.0 3.7E-31 8.1E-36 216.3 14.4 167 8-177 299-512 (534)
326 TIGR01271 CFTR_protein cystic 100.0 6.3E-31 1.4E-35 248.9 18.0 152 9-176 439-631 (1490)
327 COG4161 ArtP ABC-type arginine 100.0 2.5E-31 5.5E-36 194.2 11.3 165 7-172 13-222 (242)
328 TIGR00957 MRP_assoc_pro multi 100.0 7.7E-31 1.7E-35 248.8 17.9 152 9-176 651-845 (1522)
329 PRK13545 tagH teichoic acids e 100.0 8.1E-31 1.8E-35 223.6 16.2 150 9-172 37-224 (549)
330 PRK11147 ABC transporter ATPas 100.0 1.2E-30 2.5E-35 230.5 17.1 155 9-177 332-524 (635)
331 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.9E-31 8.6E-36 210.0 12.5 159 10-170 15-217 (255)
332 PRK11819 putative ABC transpor 100.0 1.7E-30 3.7E-35 226.5 17.7 153 9-175 337-527 (556)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.5E-30 3.3E-35 226.6 17.2 153 9-175 335-525 (552)
334 PRK10938 putative molybdenum t 100.0 3.9E-31 8.3E-36 227.4 13.1 162 9-171 273-483 (490)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.1E-30 4.6E-35 189.4 14.8 130 9-168 13-144 (144)
336 COG1134 TagH ABC-type polysacc 100.0 9E-31 2E-35 202.2 12.8 157 8-177 39-232 (249)
337 PRK10636 putative ABC transpor 100.0 2.4E-30 5.2E-35 228.5 17.0 154 9-176 325-512 (638)
338 TIGR00954 3a01203 Peroxysomal 100.0 2.8E-30 6.1E-35 228.8 17.5 144 9-166 465-653 (659)
339 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.1E-30 1.5E-34 188.9 15.8 143 9-168 12-157 (157)
340 COG4608 AppF ABC-type oligopep 100.0 1.4E-30 3E-35 204.3 12.3 158 9-172 26-191 (268)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 4.3E-30 9.2E-35 193.6 13.8 137 7-170 11-151 (177)
342 TIGR00956 3a01205 Pleiotropic 100.0 5E-30 1.1E-34 241.4 17.0 159 9-172 776-985 (1394)
343 TIGR00956 3a01205 Pleiotropic 100.0 4.8E-30 1E-34 241.5 14.8 167 8-177 73-296 (1394)
344 PLN03140 ABC transporter G fam 100.0 1.2E-29 2.7E-34 238.7 15.5 165 8-177 177-423 (1470)
345 PRK10636 putative ABC transpor 100.0 4E-29 8.7E-34 220.7 17.1 155 7-175 12-230 (638)
346 PRK13409 putative ATPase RIL; 100.0 2.4E-29 5.3E-34 220.0 15.2 146 11-171 354-533 (590)
347 PTZ00243 ABC transporter; Prov 100.0 4.5E-29 9.8E-34 236.8 18.0 152 9-176 673-865 (1560)
348 KOG0054|consensus 100.0 3.7E-29 7.9E-34 230.6 16.5 155 9-179 534-729 (1381)
349 COG1119 ModF ABC-type molybden 100.0 2.2E-29 4.8E-34 194.5 12.2 164 7-171 42-253 (257)
350 PLN03073 ABC transporter F fam 100.0 6.6E-29 1.4E-33 221.0 17.1 153 10-177 523-710 (718)
351 COG4136 ABC-type uncharacteriz 100.0 3.6E-29 7.8E-34 180.8 11.8 154 8-164 14-207 (213)
352 PLN03140 ABC transporter G fam 100.0 5.4E-29 1.2E-33 234.4 15.8 160 9-172 893-1102(1470)
353 COG4586 ABC-type uncharacteriz 100.0 1.9E-29 4.2E-34 197.2 9.4 161 9-171 37-237 (325)
354 COG4172 ABC-type uncharacteriz 100.0 9.4E-29 2E-33 202.2 13.2 165 8-172 22-239 (534)
355 PRK11147 ABC transporter ATPas 100.0 3E-28 6.6E-33 215.2 16.7 154 8-175 15-237 (635)
356 COG4167 SapF ABC-type antimicr 100.0 4.7E-28 1E-32 180.2 14.1 166 9-176 26-234 (267)
357 COG4133 CcmA ABC-type transpor 100.0 6.7E-29 1.5E-33 184.8 9.6 149 6-156 12-194 (209)
358 PRK13409 putative ATPase RIL; 100.0 4.4E-29 9.5E-34 218.3 10.1 154 10-167 88-287 (590)
359 cd03238 ABC_UvrA The excision 100.0 1.1E-27 2.4E-32 180.4 15.7 145 9-169 8-166 (176)
360 KOG0059|consensus 100.0 2.2E-28 4.7E-33 222.3 11.6 166 11-178 580-784 (885)
361 KOG0061|consensus 100.0 4.5E-28 9.7E-33 212.6 11.8 166 7-177 41-256 (613)
362 COG0488 Uup ATPase components 100.0 1.1E-27 2.4E-32 206.0 13.5 158 5-176 12-235 (530)
363 COG4107 PhnK ABC-type phosphon 99.9 1.1E-26 2.5E-31 171.7 12.0 164 9-172 19-233 (258)
364 COG0488 Uup ATPase components 99.9 2E-25 4.4E-30 192.1 16.5 154 9-177 335-521 (530)
365 PLN03073 ABC transporter F fam 99.9 2E-26 4.4E-31 205.2 10.2 165 9-175 190-425 (718)
366 COG4138 BtuD ABC-type cobalami 99.9 3.8E-26 8.2E-31 168.9 7.2 163 11-176 14-216 (248)
367 COG4615 PvdE ABC-type sideroph 99.9 3.7E-26 8.1E-31 186.6 7.2 156 11-173 338-530 (546)
368 COG4778 PhnL ABC-type phosphon 99.9 1.2E-25 2.6E-30 165.4 7.0 157 10-166 25-227 (235)
369 cd03278 ABC_SMC_barmotin Barmo 99.9 2.3E-24 5.1E-29 165.2 13.5 149 13-166 14-190 (197)
370 cd03270 ABC_UvrA_I The excisio 99.9 1.7E-23 3.6E-28 163.6 14.3 58 114-171 160-224 (226)
371 PF00005 ABC_tran: ABC transpo 99.9 1.6E-23 3.4E-28 151.1 10.7 115 12-134 1-119 (137)
372 cd03271 ABC_UvrA_II The excisi 99.9 1.2E-22 2.7E-27 161.4 11.8 163 10-172 9-258 (261)
373 COG1129 MglA ABC-type sugar tr 99.9 3.9E-22 8.5E-27 169.0 15.4 162 11-172 274-482 (500)
374 cd03240 ABC_Rad50 The catalyti 99.9 1.5E-21 3.3E-26 150.4 12.1 151 12-167 13-198 (204)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.4E-22 1.4E-26 156.8 9.9 147 18-165 22-242 (251)
376 KOG0065|consensus 99.9 5.1E-22 1.1E-26 181.0 9.9 161 7-171 802-1012(1391)
377 COG4178 ABC-type uncharacteriz 99.9 3.9E-21 8.4E-26 165.9 13.3 145 9-165 406-587 (604)
378 COG3845 ABC-type uncharacteriz 99.8 4E-20 8.7E-25 154.8 15.8 163 10-172 272-484 (501)
379 cd03279 ABC_sbcCD SbcCD and ot 99.8 9.3E-21 2E-25 146.8 11.3 155 13-169 18-211 (213)
380 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1E-20 2.2E-25 149.0 11.4 149 10-165 16-234 (243)
381 COG4170 SapD ABC-type antimicr 99.8 1.9E-20 4E-25 142.6 11.6 163 9-171 20-239 (330)
382 cd03283 ABC_MutS-like MutS-lik 99.8 1.2E-20 2.6E-25 144.8 6.8 132 9-157 14-153 (199)
383 KOG0927|consensus 99.8 1.7E-20 3.7E-25 158.3 7.6 152 10-175 404-590 (614)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.8 5.2E-21 1.1E-25 148.2 3.8 54 113-166 151-204 (212)
385 cd00820 PEPCK_HprK Phosphoenol 99.8 4.4E-20 9.5E-25 127.5 6.0 77 9-94 2-78 (107)
386 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.4E-19 3E-24 138.9 7.6 140 12-171 17-170 (200)
387 PRK00635 excinuclease ABC subu 99.8 4.2E-18 9E-23 161.4 15.2 62 115-177 834-902 (1809)
388 PRK00349 uvrA excinuclease ABC 99.8 2.7E-18 5.9E-23 156.2 12.4 63 114-177 854-923 (943)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.8 4.1E-18 8.9E-23 134.8 9.9 53 114-166 180-233 (247)
390 TIGR02858 spore_III_AA stage I 99.7 9.9E-18 2.1E-22 133.9 10.5 133 23-168 112-259 (270)
391 KOG2355|consensus 99.7 7.4E-17 1.6E-21 122.5 12.0 160 9-171 27-228 (291)
392 KOG0060|consensus 99.7 7.8E-17 1.7E-21 137.2 13.3 148 9-167 448-642 (659)
393 cd03243 ABC_MutS_homologs The 99.7 3E-18 6.6E-23 131.7 4.2 145 13-171 20-170 (202)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.7 4.6E-17 1E-21 124.9 10.7 155 12-168 12-192 (198)
395 KOG0066|consensus 99.7 7.2E-17 1.6E-21 134.3 10.9 150 8-171 599-781 (807)
396 KOG0062|consensus 99.7 7.7E-17 1.7E-21 135.7 10.5 151 10-174 378-562 (582)
397 PRK07721 fliI flagellum-specif 99.7 4E-16 8.6E-21 132.1 14.8 159 9-172 146-335 (438)
398 COG1245 Predicted ATPase, RNas 99.7 7.3E-17 1.6E-21 134.4 10.0 142 10-166 350-531 (591)
399 TIGR00630 uvra excinuclease AB 99.7 1.7E-16 3.6E-21 144.4 12.8 64 114-178 852-922 (924)
400 KOG0927|consensus 99.7 9.1E-17 2E-21 135.9 9.5 167 9-177 88-305 (614)
401 COG2401 ABC-type ATPase fused 99.7 2.3E-16 5E-21 130.3 11.2 152 8-171 395-589 (593)
402 cd03284 ABC_MutS1 MutS1 homolo 99.7 8.7E-17 1.9E-21 124.9 7.9 147 9-171 18-172 (216)
403 KOG0064|consensus 99.7 5.7E-16 1.2E-20 131.0 10.7 141 10-164 496-681 (728)
404 KOG0065|consensus 99.7 1.1E-15 2.5E-20 140.1 12.5 164 9-177 128-347 (1391)
405 cd03239 ABC_SMC_head The struc 99.6 2.6E-15 5.5E-20 113.4 11.6 148 12-166 12-172 (178)
406 cd03241 ABC_RecN RecN ATPase i 99.6 4.2E-15 9E-20 119.5 11.2 57 111-167 192-248 (276)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.8E-15 4E-20 117.9 8.2 140 9-171 17-172 (222)
408 cd03227 ABC_Class2 ABC-type Cl 99.6 9.6E-15 2.1E-19 108.6 9.5 136 13-166 12-155 (162)
409 KOG0062|consensus 99.6 6.6E-16 1.4E-20 130.1 3.5 158 7-175 91-279 (582)
410 cd03277 ABC_SMC5_euk Eukaryoti 99.6 8.3E-15 1.8E-19 113.6 9.3 157 12-169 14-212 (213)
411 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.2E-14 2.5E-19 112.0 8.9 125 8-157 15-156 (204)
412 TIGR03238 dnd_assoc_3 dnd syst 99.6 1.9E-15 4.1E-20 127.7 3.9 68 9-80 19-87 (504)
413 COG1245 Predicted ATPase, RNas 99.5 3.2E-14 7E-19 118.8 5.1 147 19-166 97-288 (591)
414 cd03281 ABC_MSH5_euk MutS5 hom 99.5 2.6E-13 5.5E-18 105.3 9.2 127 16-157 21-159 (213)
415 cd03287 ABC_MSH3_euk MutS3 hom 99.5 2.8E-13 6E-18 105.6 9.4 133 9-156 18-158 (222)
416 PRK00635 excinuclease ABC subu 99.5 1.4E-12 3E-17 124.5 14.3 63 115-178 1724-1793(1809)
417 TIGR01069 mutS2 MutS2 family p 99.4 5.7E-13 1.2E-17 120.0 6.0 128 15-156 314-449 (771)
418 COG0178 UvrA Excinuclease ATPa 99.4 9.9E-12 2.1E-16 109.9 13.2 64 115-179 847-917 (935)
419 COG3910 Predicted ATPase [Gene 99.3 1.4E-11 3.1E-16 92.5 10.1 155 16-171 32-208 (233)
420 cd03242 ABC_RecF RecF is a rec 99.3 3.9E-11 8.6E-16 96.1 13.1 53 114-169 213-269 (270)
421 PF02463 SMC_N: RecF/RecN/SMC 99.3 2E-11 4.4E-16 94.6 8.2 51 115-165 162-212 (220)
422 smart00534 MUTSac ATPase domai 99.3 7.5E-12 1.6E-16 95.0 5.3 123 24-160 1-130 (185)
423 cd03286 ABC_MSH6_euk MutS6 hom 99.3 1.9E-11 4E-16 95.1 7.4 134 9-157 17-158 (218)
424 TIGR02788 VirB11 P-type DNA tr 99.2 2.1E-11 4.5E-16 99.5 7.5 134 15-171 137-272 (308)
425 TIGR01026 fliI_yscN ATPase Fli 99.2 9.5E-11 2.1E-15 99.6 10.8 158 10-171 152-339 (440)
426 cd01130 VirB11-like_ATPase Typ 99.2 2.1E-11 4.5E-16 92.6 5.3 79 12-94 15-96 (186)
427 PRK00300 gmk guanylate kinase; 99.2 5.4E-11 1.2E-15 91.2 6.1 47 20-68 3-61 (205)
428 PRK07196 fliI flagellum-specif 99.2 2.9E-11 6.4E-16 102.2 4.7 160 9-171 143-332 (434)
429 KOG0063|consensus 99.1 1.4E-10 3.1E-15 96.6 8.0 143 9-166 349-532 (592)
430 PRK08533 flagellar accessory p 99.1 6.6E-10 1.4E-14 87.1 11.0 138 18-165 20-184 (230)
431 KOG0066|consensus 99.1 2.8E-11 6E-16 101.3 3.3 164 9-175 277-493 (807)
432 PRK06002 fliI flagellum-specif 99.1 1E-10 2.2E-15 99.1 5.6 159 10-171 154-342 (450)
433 PRK09825 idnK D-gluconate kina 99.1 7.8E-11 1.7E-15 88.8 4.1 67 21-93 2-69 (176)
434 PRK10078 ribose 1,5-bisphospho 99.0 6.1E-10 1.3E-14 84.5 5.7 55 22-80 2-56 (186)
435 cd01128 rho_factor Transcripti 99.0 2.5E-09 5.4E-14 84.8 9.2 153 17-171 11-213 (249)
436 PRK00064 recF recombination pr 99.0 1.1E-08 2.5E-13 85.2 12.5 48 120-169 309-359 (361)
437 PRK08149 ATP synthase SpaL; Va 99.0 8.8E-10 1.9E-14 93.1 5.5 159 10-171 140-327 (428)
438 PRK13695 putative NTPase; Prov 98.9 2.3E-09 5E-14 80.3 5.9 55 115-172 100-156 (174)
439 PRK01889 GTPase RsgA; Reviewed 98.9 1.9E-09 4.1E-14 89.7 5.9 78 13-94 186-263 (356)
440 TIGR00235 udk uridine kinase. 98.9 7.8E-10 1.7E-14 85.2 3.2 70 20-91 4-75 (207)
441 cd01120 RecA-like_NTPases RecA 98.9 1.4E-08 3E-13 74.1 9.5 36 24-59 1-36 (165)
442 TIGR02322 phosphon_PhnN phosph 98.9 4.9E-09 1.1E-13 78.7 6.8 66 22-88 1-82 (179)
443 PRK00409 recombination and DNA 98.9 5.3E-09 1.1E-13 94.8 7.9 136 14-163 318-462 (782)
444 PF13555 AAA_29: P-loop contai 98.9 1.7E-09 3.6E-14 67.4 3.1 39 12-50 12-51 (62)
445 PRK06315 type III secretion sy 98.9 2.9E-09 6.2E-14 90.4 5.5 158 10-171 153-341 (442)
446 PRK10416 signal recognition pa 98.8 4.1E-09 8.8E-14 86.4 4.8 74 20-93 112-191 (318)
447 cd01131 PilT Pilus retraction 98.8 2E-08 4.4E-13 77.0 7.9 117 24-164 3-121 (198)
448 cd01136 ATPase_flagellum-secre 98.8 7E-09 1.5E-13 85.0 5.3 159 10-171 58-245 (326)
449 PRK09270 nucleoside triphospha 98.8 8.1E-09 1.8E-13 80.8 4.8 34 20-53 31-64 (229)
450 TIGR00554 panK_bact pantothena 98.8 6.5E-09 1.4E-13 84.0 4.2 68 21-91 61-131 (290)
451 TIGR00416 sms DNA repair prote 98.8 2.5E-08 5.4E-13 85.5 7.5 136 19-168 91-247 (454)
452 PRK07960 fliI flagellum-specif 98.7 8.9E-09 1.9E-13 87.4 4.5 62 17-80 170-238 (455)
453 PLN02796 D-glycerate 3-kinase 98.7 3.7E-09 8.1E-14 86.9 1.8 53 10-62 80-143 (347)
454 PRK07594 type III secretion sy 98.7 1.1E-08 2.4E-13 86.6 4.7 50 9-59 143-192 (433)
455 PRK09099 type III secretion sy 98.7 1.6E-08 3.5E-13 85.9 5.6 50 9-59 151-200 (441)
456 PRK09862 putative ATP-dependen 98.7 9.4E-09 2E-13 88.8 3.8 55 8-62 196-250 (506)
457 TIGR03498 FliI_clade3 flagella 98.7 1.7E-08 3.6E-13 85.4 5.2 158 11-171 130-318 (418)
458 TIGR03881 KaiC_arch_4 KaiC dom 98.7 2.3E-08 5E-13 78.0 5.6 41 18-58 16-57 (229)
459 TIGR02546 III_secr_ATP type II 98.7 1.6E-08 3.5E-13 85.8 4.6 160 9-171 133-321 (422)
460 PTZ00132 GTP-binding nuclear p 98.7 5.1E-08 1.1E-12 75.3 7.0 38 24-61 11-66 (215)
461 PRK00349 uvrA excinuclease ABC 98.7 7.3E-08 1.6E-12 88.7 8.8 57 115-171 513-576 (943)
462 TIGR03497 FliI_clade2 flagella 98.7 3.6E-08 7.9E-13 83.3 5.8 158 10-171 126-313 (413)
463 KOG0063|consensus 98.7 2.3E-08 5E-13 83.7 4.5 147 20-166 98-288 (592)
464 TIGR00630 uvra excinuclease AB 98.7 9.3E-08 2E-12 87.9 8.7 57 115-171 511-574 (924)
465 PRK06995 flhF flagellar biosyn 98.7 1.7E-08 3.7E-13 86.6 3.5 41 11-51 245-285 (484)
466 cd01124 KaiC KaiC is a circadi 98.7 1.2E-08 2.5E-13 76.9 2.2 57 109-165 93-163 (187)
467 PLN02318 phosphoribulokinase/u 98.6 2.8E-08 6.1E-13 86.6 4.8 61 23-92 66-127 (656)
468 TIGR02524 dot_icm_DotB Dot/Icm 98.6 5.9E-08 1.3E-12 80.8 6.2 89 20-110 132-234 (358)
469 cd02026 PRK Phosphoribulokinas 98.6 3.7E-08 8.1E-13 79.1 4.3 55 24-81 1-55 (273)
470 PTZ00035 Rad51 protein; Provis 98.6 4.2E-08 9E-13 81.1 4.7 70 19-95 115-191 (337)
471 cd01854 YjeQ_engC YjeQ/EngC. 98.6 4.4E-08 9.5E-13 79.3 4.6 63 18-82 158-223 (287)
472 smart00382 AAA ATPases associa 98.6 2.6E-06 5.7E-11 59.6 13.1 40 21-60 1-41 (148)
473 TIGR03496 FliI_clade1 flagella 98.6 6.4E-08 1.4E-12 81.8 5.4 159 10-171 126-315 (411)
474 PRK05922 type III secretion sy 98.6 7E-08 1.5E-12 81.8 5.6 158 11-171 147-332 (434)
475 PRK08472 fliI flagellum-specif 98.6 8.2E-08 1.8E-12 81.5 5.0 159 10-171 146-333 (434)
476 PRK13830 conjugal transfer pro 98.6 1.8E-06 3.8E-11 79.1 14.0 55 117-171 658-724 (818)
477 PRK03846 adenylylsulfate kinas 98.6 5.3E-08 1.2E-12 74.5 3.6 56 20-80 22-78 (198)
478 TIGR00606 rad50 rad50. This fa 98.6 1.2E-07 2.5E-12 90.7 6.5 60 16-79 23-87 (1311)
479 PRK05688 fliI flagellum-specif 98.5 7.1E-08 1.5E-12 82.1 4.2 159 10-171 157-346 (451)
480 PRK04863 mukB cell division pr 98.5 1.4E-07 3E-12 90.2 6.5 47 12-59 18-64 (1486)
481 PRK00098 GTPase RsgA; Reviewed 98.5 1E-07 2.2E-12 77.6 4.8 62 21-83 163-227 (298)
482 PRK06793 fliI flagellum-specif 98.5 1.1E-07 2.4E-12 80.6 5.1 50 10-60 145-194 (432)
483 cd00879 Sar1 Sar1 subfamily. 98.5 9.4E-08 2E-12 72.1 4.3 48 11-59 9-64 (190)
484 TIGR00368 Mg chelatase-related 98.5 5.2E-08 1.1E-12 84.3 3.1 56 8-63 197-252 (499)
485 PRK11545 gntK gluconate kinase 98.5 3.7E-08 8.1E-13 73.2 1.5 60 28-93 1-61 (163)
486 PLN03210 Resistant to P. syrin 98.5 7.1E-07 1.5E-11 84.4 10.3 44 15-58 200-244 (1153)
487 PRK06067 flagellar accessory p 98.5 6.7E-07 1.4E-11 70.1 8.5 143 18-166 21-187 (234)
488 TIGR00101 ureG urease accessor 98.5 8.5E-08 1.9E-12 73.6 3.1 56 24-81 3-58 (199)
489 cd02025 PanK Pantothenate kina 98.5 8.9E-08 1.9E-12 74.6 2.8 32 24-55 1-34 (220)
490 cd04155 Arl3 Arl3 subfamily. 98.5 2.6E-07 5.7E-12 68.4 5.2 38 23-60 15-60 (173)
491 PRK08972 fliI flagellum-specif 98.5 1.8E-07 3.9E-12 79.3 4.7 39 10-49 151-189 (444)
492 PRK05399 DNA mismatch repair p 98.4 6E-07 1.3E-11 82.4 7.5 123 11-159 597-737 (854)
493 cd01121 Sms Sms (bacterial rad 98.4 3.7E-07 8.1E-12 76.4 5.6 41 19-59 79-120 (372)
494 TIGR03263 guanyl_kin guanylate 98.4 2.3E-07 5E-12 69.6 3.8 26 22-47 1-26 (180)
495 PRK09183 transposase/IS protei 98.4 7.6E-07 1.6E-11 71.1 6.9 36 11-47 92-127 (259)
496 PF13476 AAA_23: AAA domain; P 98.4 2.3E-07 4.9E-12 70.1 3.7 34 12-46 10-43 (202)
497 TIGR02655 circ_KaiC circadian 98.4 8.6E-08 1.9E-12 82.9 1.4 143 19-165 18-190 (484)
498 PRK06820 type III secretion sy 98.4 4.4E-07 9.5E-12 77.2 5.6 49 9-58 151-199 (440)
499 TIGR03880 KaiC_arch_3 KaiC dom 98.4 4.9E-06 1.1E-10 64.7 11.0 45 121-165 122-177 (224)
500 PRK06936 type III secretion sy 98.4 3.7E-07 8E-12 77.5 5.0 40 10-50 151-190 (439)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-46 Score=285.60 Aligned_cols=171 Identities=29% Similarity=0.439 Sum_probs=140.8
Q ss_pred ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC-ChhhhccCcEEEEccCCCCc
Q psy10472 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL-DGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~-~~~~~r~~~i~~v~q~~~l~ 83 (181)
..+...+|++||++|++||+++|+||||||||||||||++|.+|++|+|.++|+++... +...+|++ +|+|||+++||
T Consensus 11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~-vGmVFQ~fnLF 89 (240)
T COG1126 11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK-VGMVFQQFNLF 89 (240)
T ss_pred EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh-cCeeccccccc
Confidence 34557799999999999999999999999999999999999999999999999877433 34556765 99999999999
Q ss_pred cc-cHHHHhhcCCC---CCCHHH----HHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472 84 AT-SVRENIRYGDS---SVSDEQ----IEEAAKLANAHG-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 84 ~~-tv~enl~~~~~---~~~~~~----~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~ 126 (181)
|. ||.||+.++.. ..++++ ..+.++.+++.+ ++.|+|||+|||
T Consensus 90 PHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDP 169 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP 169 (240)
T ss_pred ccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCH
Confidence 86 99999998741 122222 223344444332 456789999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+...++++.+++++ +|.|+|+|||++.++.. ||||++|++|++++. ++++
T Consensus 170 Elv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~-g~p~ 221 (240)
T COG1126 170 ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE-GPPE 221 (240)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe-cCHH
Confidence 99999999999876 59999999999999977 999999999999885 4443
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=279.24 Aligned_cols=172 Identities=31% Similarity=0.483 Sum_probs=147.6
Q ss_pred CCccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 3 ~~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l 82 (181)
++....+.+++++||+|++||+++++|||||||||+||+|++|++|++|+|+|+|+++.+.+..++|++ ||||-|...|
T Consensus 8 sk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~-IGYviQqigL 86 (309)
T COG1125 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK-IGYVIQQIGL 86 (309)
T ss_pred ehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh-hhhhhhhccc
Confidence 444556789999999999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred ccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-------------------------------ccccCCCCCC
Q psy10472 83 FAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-------------------------------FISEFPSGAL 124 (181)
Q Consensus 83 ~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~L 124 (181)
||. ||.|||++-.. ..+ ++++++.++++++.. ++.++||++|
T Consensus 87 FPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgAL 166 (309)
T COG1125 87 FPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGAL 166 (309)
T ss_pred CCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCcccc
Confidence 986 99999987532 223 345566777766642 3456799999
Q ss_pred CHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 125 DNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
||.++..+.+.+..+++ ++|||+||||++++.. +|||.+|++|+++.+ +.+
T Consensus 167 DpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P 220 (309)
T COG1125 167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTP 220 (309)
T ss_pred ChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCH
Confidence 99999999999988753 8999999999999865 999999999999984 443
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-44 Score=283.05 Aligned_cols=163 Identities=31% Similarity=0.491 Sum_probs=141.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~- 84 (181)
..+|+||||+|++||+++|+|.||||||||+||+++|.+|++|+|.++|+++..++... .|+ +||++||+++|+.
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~-~IGMIFQhFnLLss 97 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQ-KIGMIFQHFNLLSS 97 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHh-hccEEecccccccc
Confidence 46999999999999999999999999999999999999999999999999998887654 444 4999999999997
Q ss_pred ccHHHHhhcCCCC--C----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDSS--V----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~~--~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.||++|++|+... . .++++.++++.+++.+ ++.|+||++|||++.
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT 177 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence 5999999997421 1 2345566677666654 456779999999999
Q ss_pred HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.++++|++.. + |.||++|||.|+.++. ||||.+|++|++++.
T Consensus 178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999875 3 9999999999999987 999999999999984
No 4
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.4e-43 Score=271.35 Aligned_cols=163 Identities=35% Similarity=0.506 Sum_probs=138.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~~ 85 (181)
..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.|+|+++..++. ..+|++.||||||++.|++.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 469999999999999999999999999999999999999999999999999988874 34677779999999999986
Q ss_pred -cHHHHhhcCC----CCC--CHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHH
Q psy10472 86 -SVRENIRYGD----SSV--SDEQIEEAAKLANAHG------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 86 -tv~enl~~~~----~~~--~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~ 128 (181)
|+.||+.++. ... ..+..+..++.+++.+ ++.|+||++||.++
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 9999998641 111 1233455555555432 35677999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
.+.+++++.++. .|+|+|+||||+..+..|||++.|++|++..
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999874 3899999999999999999999999999643
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=289.48 Aligned_cols=171 Identities=28% Similarity=0.443 Sum_probs=145.2
Q ss_pred ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
..+...+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..+++.+ +.||+|||++.|||
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k---R~ig~VFQ~YALFP 90 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---RPIGMVFQSYALFP 90 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh---cccceeecCcccCC
Confidence 344567999999999999999999999999999999999999999999999999999988653 34999999999998
Q ss_pred c-cHHHHhhcCCCC---CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 85 T-SVRENIRYGDSS---VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 85 ~-tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
. ||+|||+|+.+. .. .+++.++++.+++.+ ++.|+|.++||..
T Consensus 91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence 6 999999999651 12 235677777776654 3556799999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchhh
Q psy10472 128 SEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 128 ~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
.+.++...++++. .|.|.|+||||.+++.. +|||.+|++|+|.. .+++++.
T Consensus 171 LR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q-~gtP~ei 224 (352)
T COG3842 171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ-VGTPEEI 224 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee-cCCHHHH
Confidence 9999999998764 39999999999999855 99999999999987 5655543
No 6
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.8e-43 Score=274.84 Aligned_cols=169 Identities=30% Similarity=0.449 Sum_probs=144.5
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-AT 85 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~ 85 (181)
+.+++++|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.+++.+++.++ +|||||.+... +.
T Consensus 13 ~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~-ia~vpQ~~~~~~~~ 91 (258)
T COG1120 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK-LAYVPQSPSAPFGL 91 (258)
T ss_pred CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh-EEEeccCCCCCCCc
Confidence 35679999999999999999999999999999999999999999999999999999998887765 99999997554 56
Q ss_pred cHHHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472 86 SVRENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 86 tv~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~ 126 (181)
||+|-+.+|+.. . +.+.+.++++.+++.. ++.|+||++||.
T Consensus 92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence 999999988432 1 2234667777666544 356779999999
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.++.+++++++++. +|.|+|+|+||++.+.. ||++++|++|+++. .+.++
T Consensus 172 ~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~ 224 (258)
T COG1120 172 AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPE 224 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcc
Confidence 99999999999875 38999999999999855 99999999999998 45544
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=268.34 Aligned_cols=158 Identities=32% Similarity=0.443 Sum_probs=133.2
Q ss_pred cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~ 85 (181)
.+...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+.+.... ..++||||++.|||.
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~------~~~~~vFQ~~~LlPW 86 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG------PDIGYVFQEDALLPW 86 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC------CCEEEEeccCcccch
Confidence 34467999999999999999999999999999999999999999999999999873321 238999999999997
Q ss_pred -cHHHHhhcCCCCC------CHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDSSV------SDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~ 129 (181)
||+||+.++.... ..+++.++++.+++.++ +.|+||++||..++
T Consensus 87 ~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR 166 (248)
T COG1116 87 LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166 (248)
T ss_pred hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence 9999999984321 13346677777776553 55779999999999
Q ss_pred HHHHHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEeC--CeE
Q psy10472 130 KLVQAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQI 169 (181)
Q Consensus 130 ~~i~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i 169 (181)
..+.+.+.++ . .++|+++||||.+++-. +|||++|.+ |++
T Consensus 167 ~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999998774 4 48999999999999976 999999998 445
No 8
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=273.99 Aligned_cols=172 Identities=28% Similarity=0.454 Sum_probs=141.1
Q ss_pred cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~ 85 (181)
.+...+++|||++|+.||.++|+||||||||||||+|+||..|++|+|.++|+.+.+.+....+.++||||||++.+|+.
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 34456899999999999999999999999999999999999999999999999443333223344569999999999975
Q ss_pred -cHHHHhhcCCCC--------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 86 -SVRENIRYGDSS--------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 86 -tv~enl~~~~~~--------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
||.+||+||.+. ..+.++.+.++.+++.+ ++.|+|+++||..
T Consensus 92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~ 171 (345)
T COG1118 92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171 (345)
T ss_pred chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHH
Confidence 999999998521 12445666677666554 3567799999999
Q ss_pred HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472 128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 178 (181)
.+..+...|+++. + |.|+++||||.+++.. ||||++|++|+|.. .+++++
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq-vg~p~e 224 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ-VGPPDE 224 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee-eCCHHH
Confidence 9999999998864 4 8999999999999966 99999999999987 455443
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-42 Score=265.52 Aligned_cols=172 Identities=29% Similarity=0.498 Sum_probs=141.6
Q ss_pred ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCC
Q psy10472 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPV 81 (181)
Q Consensus 5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~ 81 (181)
.++.+.|+++|||+|++||+++|+||||||||||||+|.|+++|++|+|.++|+++.+++.. ..|++ +|++||...
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r-~GvlFQ~gA 95 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR-MGVLFQQGA 95 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh-eeEEeeccc
Confidence 34557899999999999999999999999999999999999999999999999999888764 34554 999999999
Q ss_pred Cccc-cHHHHhhcCCCC---CCHHHHHH----HHHHhcccc------------------------------ccccCCCCC
Q psy10472 82 LFAT-SVRENIRYGDSS---VSDEQIEE----AAKLANAHG------------------------------FISEFPSGA 123 (181)
Q Consensus 82 l~~~-tv~enl~~~~~~---~~~~~~~~----~~~~~~~~~------------------------------~~~~~P~~~ 123 (181)
||.. ||+||++|+.+. ..+..+++ .++.+++.. ++.|+||++
T Consensus 96 LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsG 175 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175 (263)
T ss_pred cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 9975 999999997432 22332222 223333322 356789999
Q ss_pred CCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472 124 LDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 178 (181)
|||.+...+.++++++++ |.|+++||||++.+.. |||++++.+|+|+. .++.++
T Consensus 176 LDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~-~Gt~~e 232 (263)
T COG1127 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA-EGTPEE 232 (263)
T ss_pred CCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE-eCCHHH
Confidence 999999999999998764 8999999999999866 99999999999987 455443
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-42 Score=279.49 Aligned_cols=164 Identities=30% Similarity=0.478 Sum_probs=141.8
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~e 89 (181)
+++++||+|++||+++|+||||||||||||+|+||.+|++|+|+|+|++++++++.+ +.||+|||++.|||. ||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~---R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---RGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH---CCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999999999999999988764 349999999999986 9999
Q ss_pred HhhcCCCCC------CHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHHHHH
Q psy10472 90 NIRYGDSSV------SDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKLVQA 134 (181)
Q Consensus 90 nl~~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~i~~ 134 (181)
|++|+.+.. .++++.++++.+++.++ +.|+|.++||...+..+..
T Consensus 95 Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ 174 (338)
T COG3839 95 NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRS 174 (338)
T ss_pred HhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHH
Confidence 999985421 24566777777766553 4566999999999999999
Q ss_pred HHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472 135 ALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 135 ~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 178 (181)
.++++.+ +.|+|+||||..++.. +|||.+|++|++.+ .+.+.+
T Consensus 175 ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~e 220 (338)
T COG3839 175 EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLE 220 (338)
T ss_pred HHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHH
Confidence 9988653 8999999999999865 99999999999987 455443
No 11
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.5e-42 Score=254.35 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=141.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+||||+|++||++.|+||||||||||||+|++..+|+.|+|.++|+++..++..+ +|++ ||+|||+..|++.
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~-IGvVFQD~rLL~~ 93 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ-IGVVFQDFRLLPD 93 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe-eeeEeeecccccc
Confidence 56999999999999999999999999999999999999999999999999998876543 4554 9999999999875
Q ss_pred -cHHHHhhcCCCC------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDSS------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
||+||++|+..- .-++++.++++.+++.+ ++.|+||++|||...
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 999999997421 12345666777766543 467889999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.+++.++.++. .|+||+|+|||.+.+.. -.|++.+++|+++.+
T Consensus 174 ~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 174 WEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999886 49999999999999976 789999999999863
No 12
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-42 Score=260.92 Aligned_cols=166 Identities=30% Similarity=0.455 Sum_probs=142.4
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-----ceEEECCEECCCC--ChhhhccCcEEEEccCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDLKHL--DGTWLRGNVIGLINQEP 80 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-----G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~ 80 (181)
.+.+|++||++|++++++|++||||||||||||++.++..... |+|.++|+++... +...+|++ ||+|||.|
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~-vGMVFQkP 97 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR-VGMVFQKP 97 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH-heeeccCC
Confidence 4679999999999999999999999999999999999987765 9999999999764 45677876 99999999
Q ss_pred CCccccHHHHhhcCCCCC------CHHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 81 VLFATSVRENIRYGDSSV------SDEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 81 ~l~~~tv~enl~~~~~~~------~~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+.|+.|++||++|+.+.. -++.++++++.+.+++ ++.|+|+
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 999999999999984321 1234555555544443 4667899
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG 174 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~ 174 (181)
++|||.+...+.+++.++++..|||+|||++..+.+ +|+..++..|+++|...
T Consensus 178 SALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 178 SALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred cccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 999999999999999999889999999999999977 99999999999999533
No 13
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.3e-42 Score=301.00 Aligned_cols=169 Identities=47% Similarity=0.752 Sum_probs=155.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+||.++.+.+...+|++ ||||+|++.+|.+|++
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~-ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ-VGYVLQDPFLFSGSIR 564 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh-eeEEcccchhhcCcHH
Confidence 369999999999999999999999999999999999999999999999999999999999876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||++++.+..+.+++.++++..++.+ ++.||||++||+++
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s 644 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence 99999988777788888887766554 34567999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
++.+.+.|.+..+|+|+|+|||+++.++.||||++|++|++++ .++++++
T Consensus 645 E~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~-~gs~~el 694 (709)
T COG2274 645 EAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE-QGSHEEL 694 (709)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceec-cCCHHHH
Confidence 9999999999988999999999999999999999999999999 6777654
No 14
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-41 Score=285.35 Aligned_cols=168 Identities=42% Similarity=0.641 Sum_probs=154.4
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.++.+++...||++ ++||+|+|.+|++|++|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~-i~~v~Q~p~lf~gTire 413 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ-ISWVSQNPYLFAGTIRE 413 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH-eeeeCCCCccccccHHH
Confidence 79999999999999999999999999999999999999999999999999999999889876 99999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHhccccc---------------------------------------cccCCCCCCCHHHHH
Q psy10472 90 NIRYGDSSVSDEQIEEAAKLANAHGF---------------------------------------ISEFPSGALDNESEK 130 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~P~~~LD~~~~~ 130 (181)
|+.++....+++++.++++..++.++ +.|+||++||.++++
T Consensus 414 Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~ 493 (559)
T COG4988 414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQ 493 (559)
T ss_pred HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHH
Confidence 99999877788888888887665443 446699999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 131 LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 131 ~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
.+.+.|.+..+++|+|+|||+++.+..||+|++|++|++++ .+.++++
T Consensus 494 ~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~-~g~~~~L 541 (559)
T COG4988 494 IILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVE-QGTHEEL 541 (559)
T ss_pred HHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceec-cCCHHHH
Confidence 99999999988999999999999999999999999999999 5665543
No 15
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.7e-41 Score=292.90 Aligned_cols=168 Identities=35% Similarity=0.579 Sum_probs=152.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|+++.+++...+|++ |+||+|+|.+|++|++
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH-LSWVGQNPQLPHGTLR 440 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhh-eEEecCCCcCCCcCHH
Confidence 56999999999999999999999999999999999999 999999999999999998888875 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++.+..++++++++++.+++.+ ++.|+||++||+++
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99999876677888888888766544 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
++.+.+.+++..+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus 521 e~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e-~G~~~eL 570 (588)
T PRK11174 521 EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ-QGDYAEL 570 (588)
T ss_pred HHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee-cCCHHHH
Confidence 9999999988878999999999999998899999999999998 5666543
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-41 Score=258.19 Aligned_cols=169 Identities=37% Similarity=0.483 Sum_probs=140.8
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLF 83 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~ 83 (181)
+.+++|++|||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++..++.. ++|++ +||+||+++|.
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~-iGmIfQ~~nLv 93 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD-IGMIFQQFNLV 93 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh-ceeEeccCCcc
Confidence 457799999999999999999999999999999999999999999999999998887643 45554 99999999999
Q ss_pred cc-cHHHHhhcCCC-----------CCCHH---HHHHHHHHhcccc-----------------------------ccccC
Q psy10472 84 AT-SVRENIRYGDS-----------SVSDE---QIEEAAKLANAHG-----------------------------FISEF 119 (181)
Q Consensus 84 ~~-tv~enl~~~~~-----------~~~~~---~~~~~~~~~~~~~-----------------------------~~~~~ 119 (181)
+. ||.+|+..+.. ..+++ ..-++++.+++.+ ++.|+
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE 173 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence 86 99999987631 12222 2334444444332 46788
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 120 PSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
|+++|||.+.+.+++.|++.. +|.|+|+..|+++.+.. |||++-|++|+++. +++..
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf-Dg~~~ 233 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF-DGPAS 233 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE-eCChh
Confidence 999999999999999999864 48999999999999965 99999999999998 45543
No 17
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.8e-40 Score=293.01 Aligned_cols=166 Identities=39% Similarity=0.539 Sum_probs=149.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++ ||||+|++.+|++|++
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ-LGVVLQNGRLMSGSIF 544 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc-cEEEccCCccCcccHH
Confidence 569999999999999999999999999999999999999999999999999999998888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++.+ .++++++++++.+++.+ ++.|+||++||+.+
T Consensus 545 eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 545 ENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred HHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99999866 67888888888776544 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
++.+.+.++.. ++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus 624 e~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~-~G~~~~L 671 (686)
T TIGR03797 624 QAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQ-QGTYDEL 671 (686)
T ss_pred HHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEE-ECCHHHH
Confidence 99999999876 589999999999998899999999999998 5666543
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-40 Score=267.72 Aligned_cols=163 Identities=29% Similarity=0.500 Sum_probs=139.8
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
.+.+|++|||+|++|++++|+||||||||||+|+|+|+.+|++|+|.++|.+...- ....+++ +||+||++.+++. |
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~-igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRR-IGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhh-eEEEccCCCCCcccc
Confidence 46799999999999999999999999999999999999999999999999987653 3445544 9999999998876 9
Q ss_pred HHHHhhcCCCC------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDSS------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
++||+.|.... ...++++++++.+++.. ++.|+||++|||.++..
T Consensus 95 ~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~ 174 (293)
T COG1131 95 VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE 174 (293)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHH
Confidence 99999885321 12456777887777653 35577999999999999
Q ss_pred HHHHHHHhc-CC-cEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 132 VQAALESAC-KG-RTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 132 i~~~l~~~~-~~-~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++++|+.++ +| +||+++||.++++.. ||+|++|++|+++..
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~ 218 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999875 45 899999999999977 999999999999984
No 19
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-40 Score=255.57 Aligned_cols=167 Identities=31% Similarity=0.562 Sum_probs=141.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC-CChhhhccCcEEEEccCC--CCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH-LDGTWLRGNVIGLINQEP--VLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~-~~~~~~r~~~i~~v~q~~--~l~~~ 85 (181)
.++|+++||+|++||+++|+|+||||||||+++++|+++|++|.|.++|.++.. .+...+|++ +|||||+| ++|..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~-vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK-VGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc-eEEEEECcccccccC
Confidence 579999999999999999999999999999999999999999999999998763 445666765 99999999 67788
Q ss_pred cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
||.+.++|+... .. ++++.++++.+++.+ ++.|+||++||+.+++
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 999999998532 22 344667777776644 3557799999999999
Q ss_pred HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+++.++++. + |+|+|++|||++.+.. ||++++|++|+++. .+.+.
T Consensus 176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~-~g~p~ 224 (235)
T COG1122 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA-DGDPA 224 (235)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee-cCCHH
Confidence 9999999875 3 6899999999999966 99999999999987 45443
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.7e-40 Score=270.58 Aligned_cols=163 Identities=26% Similarity=0.451 Sum_probs=137.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~- 84 (181)
.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++... .|+ .|||+||++.+|+
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~-~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARR-QIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhc-CEEEEECCcccccc
Confidence 46999999999999999999999999999999999999999999999999998766443 344 4999999999997
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.||+||+.++.. ... .+++.++++.+++.+ ++.|+||++||+.++
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 599999987532 111 234556677666543 356779999999999
Q ss_pred HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
..++++|+++. + |.|||+|||+++.+.. ||++++|++|++++.
T Consensus 177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999874 3 8999999999999966 999999999999983
No 21
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.4e-40 Score=270.97 Aligned_cols=169 Identities=30% Similarity=0.421 Sum_probs=141.0
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh---ccCcEEEEccCCCCc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPVLF 83 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~l~ 83 (181)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++...+...+ |++.++|+||++.+|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 44569999999999999999999999999999999999999999999999999988776544 234599999999999
Q ss_pred cc-cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 84 AT-SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 84 ~~-tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
+. ||+||+.++... .. .+++.++++.+++.. ++.|+|+++||+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 85 999999885321 11 234566677666544 3556799999999
Q ss_pred HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+++.+.+.+.++. + ++|||+||||++++.. ||+|++|++|++++ .+++
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~ 214 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTP 214 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCH
Confidence 9999999998764 3 8999999999998855 99999999999987 3443
No 22
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.3e-40 Score=286.80 Aligned_cols=168 Identities=47% Similarity=0.721 Sum_probs=149.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|+++.+++...++++ |+|+||++.+|++|++
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ-VALVSQNVHLFNDTIA 434 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh-ceEEccCceeecchHH
Confidence 569999999999999999999999999999999999999999999999999999888887765 9999999999999999
Q ss_pred HHhhcCCCC-CCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYGDSS-VSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~~~-~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
|||.++... .++++++++++.+++.+ ++.|+||++||++
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~ 514 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 999997543 57788888887765443 2446699999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++..+.+.+....+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 515 t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e-~g~~~~ 564 (582)
T PRK11176 515 SERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVE-RGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 99999999988877899999999999998899999999999998 565543
No 23
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.1e-40 Score=290.94 Aligned_cols=169 Identities=36% Similarity=0.611 Sum_probs=152.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+. |+||+|++.+|++|++
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~-i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN-IGYVPQDPRLFYGTLR 556 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc-cEEECCChhhhhhhHH
Confidence 469999999999999999999999999999999999999999999999999999998888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++.+..+++++.++++.+++.+ ++.|+||++||+++
T Consensus 557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 99999876667888888887765543 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
++.+.+.+.+..+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus 637 e~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e-~G~~~eL 686 (694)
T TIGR03375 637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVA-DGPKDQV 686 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEe-eCCHHHH
Confidence 9999999998877899999999999998899999999999998 5766654
No 24
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-39 Score=285.84 Aligned_cols=167 Identities=35% Similarity=0.593 Sum_probs=150.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||+|++.+|++|++
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~-i~~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG-VAMVQQDPVVLADTFL 432 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh-eEEEccCCccccchHH
Confidence 469999999999999999999999999999999999999999999999999999988888865 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
+||.++. ..++++++++++.+++.+ ++.|+||++||+++
T Consensus 433 ~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 433 ANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred HHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 9999986 466778888887766443 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.+++..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 512 ~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~-~G~~~~ 560 (592)
T PRK10790 512 EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE-QGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence 9999999998877899999999999998999999999999998 566554
No 25
>KOG0058|consensus
Probab=100.00 E-value=6e-40 Score=283.05 Aligned_cols=174 Identities=53% Similarity=0.812 Sum_probs=158.5
Q ss_pred CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
|.++..+||+|+||+|+|||.+||+||||+||||+.++|..+|.|++|+|.+||+++.++++..+|++ ||+|.|+|.||
T Consensus 476 P~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~-Ig~V~QEPvLF 554 (716)
T KOG0058|consen 476 PTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK-IGLVGQEPVLF 554 (716)
T ss_pred CCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH-eeeeeccceee
Confidence 44566789999999999999999999999999999999999999999999999999999999999865 99999999999
Q ss_pred cccHHHHhhcCCCCCCHHHHHHHHHHhcccccc----------------------------------------ccCCCCC
Q psy10472 84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHGFI----------------------------------------SEFPSGA 123 (181)
Q Consensus 84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~P~~~ 123 (181)
.+||+|||.|+....++++++.++++++..+|+ .|+.|++
T Consensus 555 s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSA 634 (716)
T KOG0058|consen 555 SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSA 634 (716)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 999999999998778889999998887766653 3446789
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
||.+++..+.+.+.+..+++|||+|.|.++.++.||+|+++++|+++| .|.++++
T Consensus 635 LDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E-~G~h~eL 689 (716)
T KOG0058|consen 635 LDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE-MGTHDEL 689 (716)
T ss_pred cchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEe-cccHHHH
Confidence 999999999999998878899999999999999999999999999999 5766554
No 26
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1e-39 Score=291.19 Aligned_cols=167 Identities=35% Similarity=0.630 Sum_probs=149.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||+|++.+|++|++
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS-VAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh-eeEEecCChhhhccHH
Confidence 569999999999999999999999999999999999999999999999999999988888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++.+..+++++.++++.+++.+ ++.|+||++||+.+
T Consensus 571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 99999865667788888887766543 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
++.+.+.++. .++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus 651 e~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~-~G~~~~L 698 (710)
T TIGR03796 651 EKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ-RGTHEEL 698 (710)
T ss_pred HHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE-ecCHHHH
Confidence 9999999976 4899999999999998899999999999998 5666543
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=268.60 Aligned_cols=165 Identities=27% Similarity=0.450 Sum_probs=138.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+++||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++...++.+ +.||||||++.+|+. ||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~---r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD---RDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHH---CCEEEEeCCccccCCCCH
Confidence 56999999999999999999999999999999999999999999999999997765432 349999999999975 99
Q ss_pred HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.|+... .. .+++.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l 173 (356)
T PRK11650 94 RENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM 173 (356)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999987431 12 234566777666544 355779999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+.++++. + |.|+|+||||++++.. ||++++|++|++++ .++++
T Consensus 174 ~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~ 220 (356)
T PRK11650 174 RLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPV 220 (356)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHH
Confidence 99998864 3 8999999999998865 99999999999987 44443
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=254.28 Aligned_cols=163 Identities=32% Similarity=0.488 Sum_probs=135.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++ .++|+||++.+|+.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~ 91 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR-RMGMLFQSGALFDS 91 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc-ceEEEccCcccCCC
Confidence 569999999999999999999999999999999999999999999999999876543 23444 49999999998875
Q ss_pred -cHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 86 -SVRENIRYGDS---SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 86 -tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
|+.||+.++.. ... .+++.++++.+++.. ++.|+||++||+.+
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 99999987521 112 223455566555433 35577999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++.+++.++++. .++|||+||||++++.. ||++++|++|++++.
T Consensus 172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 172 SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 999999998864 38999999999998865 999999999999873
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=253.49 Aligned_cols=157 Identities=26% Similarity=0.438 Sum_probs=132.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcccc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFATS 86 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~t 86 (181)
++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|++...... + .+||||||.. +-||.|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~-~~IgYVPQ~~~~d~~fP~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---R-LRIGYVPQKSSVDRSFPIT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---C-CeEEEcCcccccCCCCCcC
Confidence 69999999999999999999999999999999999999999999999987654321 2 3499999965 347889
Q ss_pred HHHHhhcCCCC----------CCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHH
Q psy10472 87 VRENIRYGDSS----------VSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNE 127 (181)
Q Consensus 87 v~enl~~~~~~----------~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~ 127 (181)
|+|-+.++... .+++.+.++++.+++.++ +.|+|++++|+.
T Consensus 94 V~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~ 173 (254)
T COG1121 94 VKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173 (254)
T ss_pred HHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHH
Confidence 99999987321 134678888888876653 557799999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++..++++|++++ +|+||++||||++.+.. ||+|+.|++. ++.
T Consensus 174 ~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~~ 218 (254)
T COG1121 174 GQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LIA 218 (254)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eEe
Confidence 9999999999875 49999999999999855 9999999765 444
No 30
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-40 Score=275.85 Aligned_cols=168 Identities=38% Similarity=0.624 Sum_probs=154.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+|+||++++||.+||+|+||||||||+.+|.|.++|++|+|.++|.++..++...+|.. +++++|.+.+|.+|++
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~-i~vl~Qr~hlF~~Tlr 429 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET-ISVLTQRVHLFSGTLR 429 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH-HhhhccchHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999988777765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
+|+.++.+..++++++++++.+++.+ ++.|+||.+||+.+
T Consensus 430 ~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 430 DNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 99999988888999999998877654 35567999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++++++.+....+|+|+|+|||++..++.||||++|++|++++ .+.+.+
T Consensus 510 E~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie-~G~~~~ 558 (573)
T COG4987 510 ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE-EGTHAE 558 (573)
T ss_pred HHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeee-cCCHHh
Confidence 9999999988888999999999999999999999999999999 565544
No 31
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-39 Score=284.31 Aligned_cols=170 Identities=53% Similarity=0.823 Sum_probs=153.6
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
.+++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++ |+||||++.+|++||
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~-I~~V~Qd~~LF~~TI 419 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR-IGIVSQDPLLFSGTI 419 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh-ccEEcccceeecccH
Confidence 3579999999999999999999999999999999999999999999999999999999998876 999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCHH
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDNE 127 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~~ 127 (181)
+|||.++.+..++++++++++.+++.++ +.|+||++||++
T Consensus 420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 9999999876778888888887654442 445689999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+++.+.+.+....+++|+|+|+|+++.+..||+|++|++|++++ .++++++
T Consensus 500 tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e-~G~h~eL 550 (567)
T COG1132 500 TEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE-RGTHEEL 550 (567)
T ss_pred hHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999987767889999999999998999999999999998 5766554
No 32
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.9e-39 Score=263.94 Aligned_cols=166 Identities=21% Similarity=0.384 Sum_probs=136.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++ .+||+||++.+++. |+
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~-~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQ-RVGVVPQFDNLDPDFTV 97 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHh-cEEEEeccCcCCCCCcH
Confidence 56999999999999999999999999999999999999999999999999986543 33444 49999999999874 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.+... ... .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l 177 (306)
T PRK13537 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177 (306)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH
Confidence 999986321 111 223455666555433 356779999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+++++++. +|+|||++||+++++.. ||||++|++|+++. .++.+
T Consensus 178 ~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~-~g~~~ 223 (306)
T PRK13537 178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA-EGAPH 223 (306)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence 99999875 58999999999999966 99999999999987 34443
No 33
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.4e-39 Score=267.66 Aligned_cols=165 Identities=28% Similarity=0.480 Sum_probs=138.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++. ++ .+||+||++.+|+. ||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r-~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR-DYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC-CEEEEeCCcccCCCCcH
Confidence 4589999999999999999999999999999999999999999999999998766543 33 49999999999985 99
Q ss_pred HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.|+... .. .+++.++++.+++.. ++.|+|+++||+..+..+
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l 173 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL 173 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 9999987321 11 345667777776554 345679999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+.|+++. + +.|+|+||||++++.. ||++++|++|++++ .++++
T Consensus 174 ~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~-~g~~~ 220 (353)
T TIGR03265 174 RTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ-VGTPQ 220 (353)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence 99998864 3 8999999999999865 99999999999987 45443
No 34
>KOG0055|consensus
Probab=100.00 E-value=1.2e-39 Score=294.30 Aligned_cols=174 Identities=55% Similarity=0.876 Sum_probs=157.8
Q ss_pred CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
|.++..++|+++||.|++|+.++|+|||||||||++++|.++|.|++|+|++||.++..++..++|.+ ||+|+|+|.||
T Consensus 361 PsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~-iglV~QePvlF 439 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ-IGLVSQEPVLF 439 (1228)
T ss_pred CCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh-cCeeeechhhh
Confidence 34455679999999999999999999999999999999999999999999999999999999988875 99999999999
Q ss_pred cccHHHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCC
Q psy10472 84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGA 123 (181)
Q Consensus 84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~ 123 (181)
..||+|||.|+.+..+.+++++++++++..+ ++.|+||++
T Consensus 440 ~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSa 519 (1228)
T KOG0055|consen 440 ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSA 519 (1228)
T ss_pred cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 9999999999987778888888887665443 355779999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
||+++++.+.+.|.+..+|+|.|+|+|+++.++.||++++|++|+|+| .+.++++
T Consensus 520 LD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE-~G~h~EL 574 (1228)
T KOG0055|consen 520 LDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE-QGTHDEL 574 (1228)
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE-ecCHHHH
Confidence 999999999999999989999999999999999999999999999999 5766654
No 35
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.1e-39 Score=252.20 Aligned_cols=168 Identities=25% Similarity=0.416 Sum_probs=137.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.....+..++|+||++.+|+. |+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 46999999999999999999999999999999999999999999999999987665444333359999999998876 99
Q ss_pred HHHhhcCCCCC-------------C---HHHHHHHHHHhcccc-----------------------------ccccCCCC
Q psy10472 88 RENIRYGDSSV-------------S---DEQIEEAAKLANAHG-----------------------------FISEFPSG 122 (181)
Q Consensus 88 ~enl~~~~~~~-------------~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~ 122 (181)
+||+.++.... . .+.+.++++.+++.. ++.|+||+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 172 (236)
T cd03219 93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA 172 (236)
T ss_pred HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99998752110 1 223455566555433 35577999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+||+.+++.+++.++++. +|+|+|++|||++.+.. ||++++|++|++++ .++.+
T Consensus 173 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 228 (236)
T cd03219 173 GLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPD 228 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHH
Confidence 999999999999998865 68999999999999866 99999999999987 34433
No 36
>KOG0057|consensus
Probab=100.00 E-value=3.1e-39 Score=271.20 Aligned_cols=169 Identities=43% Similarity=0.696 Sum_probs=153.8
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
.+++|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|.+||+++...+...+|+. ||||||+..||+.||
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~-Ig~VPQd~~LFndTI 441 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS-IGVVPQDSVLFNDTI 441 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh-eeEeCCcccccchhH
Confidence 3569999999999999999999999999999999999999 99999999999999998888876 999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
.+||.+|....+.+++.++++.+++.+ ++.|+||++||.+
T Consensus 442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~ 521 (591)
T KOG0057|consen 442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE 521 (591)
T ss_pred HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchh
Confidence 999999988888888888888776554 3456799999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+++.+++.+.....++|+|+|-|++..+..||+|+++++|++.+ .+++.++
T Consensus 522 TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e-~gth~el 572 (591)
T KOG0057|consen 522 TEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKE-YGTHSEL 572 (591)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEE-eccHHHH
Confidence 99999999988777999999999999999999999999999998 5665543
No 37
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-39 Score=265.91 Aligned_cols=165 Identities=27% Similarity=0.482 Sum_probs=138.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+.. + +.+||+||++.+|+. ||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~-r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--Q-RDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--H-CCEEEEeCCcccCCCCCH
Confidence 4689999999999999999999999999999999999999999999999999766533 2 349999999999985 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.|+.. ... .++++++++.+++.. ++.|+|+++||+..++.+
T Consensus 96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l 175 (351)
T PRK11432 96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175 (351)
T ss_pred HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 999998742 111 234566776666544 345679999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+.|+++. + |.|+|+||||++++.. ||+|++|++|++++ .++++
T Consensus 176 ~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~ 222 (351)
T PRK11432 176 REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQ 222 (351)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence 99998864 3 8999999999999855 99999999999987 45443
No 38
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4e-39 Score=261.65 Aligned_cols=166 Identities=21% Similarity=0.374 Sum_probs=137.0
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...+++ .+||+||++.+++. |
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRR-SIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-HHHHHh-hcEEecCCCCCCCCCc
Confidence 35699999999999999999999999999999999999999999999999988653 334444 49999999998875 9
Q ss_pred HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
++||+.+... ... .+++.++++.+++.. ++.|+||++||+.+++.
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 9999986421 111 234556666665533 35677999999999999
Q ss_pred HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++++++++. +|+|||++||+++++.. ||++++|++|+++. .++.
T Consensus 163 l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~ 208 (302)
T TIGR01188 163 IWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTP 208 (302)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCH
Confidence 999998874 58999999999999976 99999999999987 3443
No 39
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-40 Score=253.93 Aligned_cols=173 Identities=27% Similarity=0.412 Sum_probs=144.7
Q ss_pred cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~ 85 (181)
++.-.+++||||++++||+++|+||||||||||+++|+|+++|++|+|.++|++++.+++.+..+..|+.-||.+.+|+.
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 34457999999999999999999999999999999999999999999999999999999887766779999999999986
Q ss_pred -cHHHHhhcCCC------------CC---C---HHHHHHHHHHhcccc-----------------------------ccc
Q psy10472 86 -SVRENIRYGDS------------SV---S---DEQIEEAAKLANAHG-----------------------------FIS 117 (181)
Q Consensus 86 -tv~enl~~~~~------------~~---~---~~~~~~~~~~~~~~~-----------------------------~~~ 117 (181)
||.||+..+.. .. . .++..++++.+++.+ ++.
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL 173 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence 99999987521 01 1 122334455555433 356
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchhh
Q psy10472 118 EFPSGALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 118 ~~P~~~LD~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
|+|.++|.+.....+.+.|+++.+ |.||++|.||+..+.. ||||++|+.|+++. .+++++.
T Consensus 174 DEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA-eG~P~eV 237 (250)
T COG0411 174 DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA-EGTPEEV 237 (250)
T ss_pred cCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc-cCCHHHH
Confidence 779999999999999999998763 6999999999999865 99999999999998 5665543
No 40
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.7e-39 Score=288.44 Aligned_cols=168 Identities=37% Similarity=0.593 Sum_probs=149.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||+|++.+|++|++
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF-INYLPQEPYIFSGSIL 565 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh-eEEEecCceehhHHHH
Confidence 569999999999999999999999999999999999999999999999999999998888876 9999999999999999
Q ss_pred HHhhcCC-CCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYGD-SSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
|||.++. +..+++++.++++.+++.+ ++.|+||++||++
T Consensus 566 eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 566 ENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred HHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 9999983 4566777788877665443 2456699999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+++.+.+.++.. +++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus 646 te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~-~G~~~~L 695 (708)
T TIGR01193 646 TEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE-QGSHDEL 695 (708)
T ss_pred HHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999875 5799999999999998899999999999998 5666543
No 41
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.1e-39 Score=281.03 Aligned_cols=168 Identities=43% Similarity=0.676 Sum_probs=148.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+|++ |+|+||++.+|++|++
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN-IAVVFQDAGLFNRSIE 426 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh-eEEEecCcccccccHH
Confidence 458999999999999999999999999999999999999999999999999999988888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.+..++++++.+++.+++.+ ++.|+||++||+.+
T Consensus 427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99999865566777777776655432 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+++.+....+++|+|+|||+++.++.||+|++|++|++++ .+++++
T Consensus 507 ~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~-~g~~~~ 555 (588)
T PRK13657 507 EAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE-SGSFDE 555 (588)
T ss_pred HHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 9999999988767899999999999998899999999999998 455443
No 42
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.4e-39 Score=287.10 Aligned_cols=167 Identities=47% Similarity=0.730 Sum_probs=147.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++ |+||+|+|.+|++|++
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ-VALVGQEPVLFSGSVR 572 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh-ceEEecCccccccCHH
Confidence 469999999999999999999999999999999999999999999999999999888888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++.+..+++++.++++.+++.+ ++.|+||++||+++
T Consensus 573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 99999866666778888887765543 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
++.+.+ . ...+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus 653 e~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive-~Gt~~eL 700 (711)
T TIGR00958 653 EQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVE-MGTHKQL 700 (711)
T ss_pred HHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE-eeCHHHH
Confidence 999988 2 2346899999999999998899999999999998 5666544
No 43
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.8e-39 Score=280.01 Aligned_cols=169 Identities=34% Similarity=0.576 Sum_probs=151.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+++...+|+. |+|++|++.+|++|++
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA-ISVVSQRVHLFSATLR 431 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh-eeEEcccchhhcccHH
Confidence 469999999999999999999999999999999999999999999999999999988888865 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccccc---------------------------------------cccCCCCCCCHHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHGF---------------------------------------ISEFPSGALDNESE 129 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~P~~~LD~~~~ 129 (181)
||+.++.+..+++++.++++.+++.++ +.|+||++||++++
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 999998766677888888887766543 33559999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 130 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 130 ~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+.+.+.+.+..+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus 512 ~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~-~g~~~~l 560 (574)
T PRK11160 512 RQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIE-QGTHQEL 560 (574)
T ss_pred HHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEE-eCCHHHH
Confidence 999999998877999999999999998899999999999998 5665543
No 44
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.9e-39 Score=248.61 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=135.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++.+|+. |+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 46999999999999999999999999999999999999999999999999987665444333459999999998886 99
Q ss_pred HHHhhcCCCCC----CHHHHHHHHHHh-cccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 88 RENIRYGDSSV----SDEQIEEAAKLA-NAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 88 ~enl~~~~~~~----~~~~~~~~~~~~-~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
+||+.++.... ..+.+.++++.+ ++.. ++.|+|+++||+.+++.++
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 172 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172 (222)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence 99998753211 122233344433 1211 3567899999999999999
Q ss_pred HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
++++++. +++|+|++||+++.+.. ||++++|++|++++ .++.+
T Consensus 173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 217 (222)
T cd03224 173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAA 217 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHH
Confidence 9998865 58999999999998865 99999999999987 34443
No 45
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=247.67 Aligned_cols=164 Identities=30% Similarity=0.375 Sum_probs=136.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Cccc-c
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFAT-S 86 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~-t 86 (181)
+++++|||+|.+||+++|+|+||||||||.++|+|+.+|++|+|.++|+++........+.+.|.+|||+|. +-|. |
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 599999999999999999999999999999999999999999999999887654433334445999999994 3354 8
Q ss_pred HHHHhhcCCCC----CCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHH
Q psy10472 87 VRENIRYGDSS----VSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 87 v~enl~~~~~~----~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i 132 (181)
|.+-|.-+... ...+++.++++.+++.. ++.|+|+++||...+.++
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 98888765322 22445677777666543 467889999999999999
Q ss_pred HHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeec
Q psy10472 133 QAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEML 173 (181)
Q Consensus 133 ~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~ 173 (181)
++++.++++ +.|+|+||||+..+.. ||||++|++|+++|..
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 999988753 7899999999999987 9999999999999853
No 46
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.1e-38 Score=249.71 Aligned_cols=163 Identities=22% Similarity=0.350 Sum_probs=134.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.....++.++|+||++.+|+. |+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 46999999999999999999999999999999999999999999999999886655433333359999999998886 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.++.. ... .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 999986421 111 123445555554432 356789999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.++++++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus 173 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 99998865 58999999999998865 99999999999986
No 47
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.5e-39 Score=249.54 Aligned_cols=160 Identities=29% Similarity=0.517 Sum_probs=132.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++ .++|+||++.+|+.
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR-HIGMVFQDHRLLSD 94 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH-hceEEecCcccccc
Confidence 3599999999999999999999999999999999999999999999999988654432 2344 49999999988875
Q ss_pred -cHHHHhhcCCC--CC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.||+.++.. .. ..+++.++++.+++.. ++.|+||++||+.++
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 99999987421 11 1234556666655433 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i 169 (181)
+.+.+.++++. ++.|||+||||++.+.. ||++++|++|++
T Consensus 175 ~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 175 RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999998864 48999999999999865 999999999974
No 48
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.2e-38 Score=264.95 Aligned_cols=164 Identities=27% Similarity=0.447 Sum_probs=137.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++.. +.+||+||++.+|+. ||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~---r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN---RHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH---CCEEEEecCcccCCCCCH
Confidence 46899999999999999999999999999999999999999999999999987665432 349999999999976 99
Q ss_pred HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.|+... .. .+++.++++.+++.. ++.|+|+++||+..++.+
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l 183 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 9999987421 12 234556666666544 355679999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus 184 ~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~-g~~ 229 (375)
T PRK09452 184 QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD-GTP 229 (375)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 99998864 3 8999999999999865 999999999999874 443
No 49
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.8e-38 Score=248.23 Aligned_cols=163 Identities=46% Similarity=0.721 Sum_probs=133.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR-QVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh-cEEEEcCCchhccchHH
Confidence 46999999999999999999999999999999999999999999999999886655555554 49999999988888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHH---------h--c-----------------------------cccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKL---------A--N-----------------------------AHGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~---------~--~-----------------------------~~~~~~~~P~~~LD~~~ 128 (181)
||+.++........+..+++. + + ..-++.|+|+++||+.+
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 999885432222222222111 1 0 01135677999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
++.+.+.|+++.+|+|||++||+++.+..||++++|++|++++.
T Consensus 174 ~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 174 EHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ 217 (237)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999987678999999999999867999999999999873
No 50
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9.1e-39 Score=264.19 Aligned_cols=164 Identities=27% Similarity=0.476 Sum_probs=137.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. ++ .++|+||++.+|+. ||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~--~r-~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR-KVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH--HC-CEEEEecCcccCCCCcH
Confidence 4689999999999999999999999999999999999999999999999998765432 23 49999999999985 99
Q ss_pred HHHhhcCCCC------CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 88 RENIRYGDSS------VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 88 ~enl~~~~~~------~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.||+.|+... .. .+++.++++.+++.. ++.|+|+++||+.+
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~ 171 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV 171 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 9999986321 12 234556677666543 35577999999999
Q ss_pred HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+.+.|+++. + +.|+|+||||++++.. ||+|++|++|++++ .+++
T Consensus 172 r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~ 221 (353)
T PRK10851 172 RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTP 221 (353)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCH
Confidence 999999998864 3 8999999999999866 99999999999987 3443
No 51
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=266.38 Aligned_cols=168 Identities=20% Similarity=0.360 Sum_probs=141.6
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-ccc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~t 86 (181)
.+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+...++++ +||++|++.++ ..|
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~-ig~v~q~~~l~~~~t 93 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VASVPQDTSLSFEFD 93 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc-eEEEccCCCCCCCCC
Confidence 3579999999999999999999999999999999999999999999999999987776666654 99999999875 469
Q ss_pred HHHHhhcCCCC----------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 87 VRENIRYGDSS----------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 87 v~enl~~~~~~----------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
++||+.++... ...++++++++.+++.. ++.|+||++||+.
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 99999876321 11334667777766644 3556799999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
++..++++|+++. ++.|||++|||++.+.. |||+++|++|+++. .++++
T Consensus 174 ~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ 224 (402)
T PRK09536 174 HQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPA 224 (402)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHH
Confidence 9999999999875 58999999999999965 99999999999987 45443
No 52
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-38 Score=249.48 Aligned_cols=164 Identities=23% Similarity=0.386 Sum_probs=136.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+++.++|+||++.+|+. |+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 46999999999999999999999999999999999999999999999999887655443333459999999999986 99
Q ss_pred HHHhhcCCCC----------C----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472 88 RENIRYGDSS----------V----SDEQIEEAAKLANAHG-----------------------------FISEFPSGAL 124 (181)
Q Consensus 88 ~enl~~~~~~----------~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L 124 (181)
.||+.++... . ..+++.++++.+++.. ++.|+||++|
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L 174 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence 9999875210 0 1234456666655433 3557799999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+.++..++++++++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 175 D~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 175 TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 999999999999987667999999999999965 999999999999873
No 53
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.4e-38 Score=247.24 Aligned_cols=166 Identities=22% Similarity=0.418 Sum_probs=136.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++ .++|+||++.+++ .|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQ-SLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhh-hEEEecCcCCccccCCH
Confidence 56999999999999999999999999999999999999999999999999876532 33444 4999999999886 599
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
++|+.++.. ... .+++.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l 172 (220)
T cd03263 93 REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 999986421 111 123455565555432 356789999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+.|+++.++.|+|++||+++.+.. ||++++|++|++++ .++.+
T Consensus 173 ~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 217 (220)
T cd03263 173 WDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQ 217 (220)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHH
Confidence 9999987667999999999999865 99999999999987 45444
No 54
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-38 Score=244.87 Aligned_cols=158 Identities=30% Similarity=0.476 Sum_probs=131.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~t 86 (181)
+++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.. ...++ .++|+||++. +++.|
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~-~i~~~~q~~~~~~~~~t 88 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRK-SIGYVMQDVDYQLFTDS 88 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhc-ceEEEecChhhhhhhcc
Confidence 569999999999999999999999999999999999999999999999998753 23333 4999999974 45679
Q ss_pred HHHHhhcCCCC--CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 87 VRENIRYGDSS--VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 87 v~enl~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
+.||+.++... ...+++.++++.+++.. ++.|+|+++||+.+++.+.+.
T Consensus 89 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 168 (205)
T cd03226 89 VREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168 (205)
T ss_pred HHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 99999875321 22345667777666543 355779999999999999999
Q ss_pred HHHh-cCCcEEEEEecCchhhhc-CCeEEEEeCCeEE
Q psy10472 136 LESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170 (181)
Q Consensus 136 l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~ 170 (181)
++++ .++.|+|++||+++.+.. ||++++|++|+++
T Consensus 169 l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 169 IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9887 458999999999999865 9999999999874
No 55
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1e-38 Score=262.74 Aligned_cols=166 Identities=26% Similarity=0.413 Sum_probs=135.9
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++ .+||+||++.+++. |
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~-~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARA-RIGVVPQFDNLDLEFT 130 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhc-cEEEEeCCccCCCCCc
Confidence 346999999999999999999999999999999999999999999999999986543 33444 49999999998864 9
Q ss_pred HHHHhhcCC--CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGD--SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~--~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
+.||+.+.. .... .+.+.++++.+++.. ++.|+||++||+.++..
T Consensus 131 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~ 210 (340)
T PRK13536 131 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210 (340)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 999998531 1111 123445566555443 35677999999999999
Q ss_pred HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++++|+++. +|+|||++||+++++.. ||+|++|++|+++.. ++.
T Consensus 211 l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~-g~~ 256 (340)
T PRK13536 211 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE-GRP 256 (340)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 999998874 58999999999999966 999999999999873 443
No 56
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-38 Score=247.26 Aligned_cols=161 Identities=31% Similarity=0.454 Sum_probs=132.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++++.++|+||++.+|+.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 4699999999999999999999999999999999999999999999999988765432 2233359999999998875
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|++||+.++.. ... .+.+.++++.+++.. ++.|+|+++||+.++
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 99999987531 111 234556666665433 356779999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeE
Q psy10472 130 KLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI 169 (181)
Q Consensus 130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i 169 (181)
+.+.++++++. +++|||++||+++.+..||++++|++|++
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999998864 38999999999998877999999999974
No 57
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=253.64 Aligned_cols=163 Identities=27% Similarity=0.553 Sum_probs=135.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CCcccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VLFATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l~~~t 86 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++ .++..|
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS-KVGLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh-hEEEEecChhhhhccCc
Confidence 46999999999999999999999999999999999999999999999999987655555554 499999997 456679
Q ss_pred HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
+.+|+.|+.. ... .+++.++++.+++.. ++.|+|+++||+.++..
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 9999987532 111 234456666655533 35577999999999999
Q ss_pred HHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEee
Q psy10472 132 VQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEM 172 (181)
Q Consensus 132 i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~ 172 (181)
++++++++. +|.|||++|||++.+. .||++++|++|++++.
T Consensus 177 l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999998874 4899999999999985 4999999999999873
No 58
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.7e-38 Score=248.00 Aligned_cols=166 Identities=33% Similarity=0.525 Sum_probs=135.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY-----DVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~-----~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...+++ .++|+||++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 91 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR-RVGMVFQKPN 91 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh-hEEEEecCch
Confidence 56999999999999999999999999999999999999 999999999999886654 333444 4999999998
Q ss_pred CccccHHHHhhcCCCC---CC----HHHHHHHHHHhcccc-------------------------------ccccCCCCC
Q psy10472 82 LFATSVRENIRYGDSS---VS----DEQIEEAAKLANAHG-------------------------------FISEFPSGA 123 (181)
Q Consensus 82 l~~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~ 123 (181)
+|+.|++||+.++... .. .+++.++++.+++.. ++.|+||++
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8866999999875211 11 234455566554422 244669999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
||+.+++.+.+.|+++.+..|+|++|||++.+.. ||++++|++|++++ .+++
T Consensus 172 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 224 (227)
T cd03260 172 LDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE-FGPT 224 (227)
T ss_pred CCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE-ecCc
Confidence 9999999999999987544999999999999865 99999999999987 3443
No 59
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-38 Score=277.91 Aligned_cols=168 Identities=46% Similarity=0.705 Sum_probs=149.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+++...++++ ++|+||+|.+|++|++
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ-VALVSQDVVLFNDTIA 423 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh-ceEEccCcccccccHH
Confidence 468999999999999999999999999999999999999999999999999998888777765 9999999999999999
Q ss_pred HHhhcCCC-CCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYGDS-SVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
|||.++.. ..++++++++++.+++.+ ++.|+||++||+.
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 99999864 567788888887765433 2446699999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
+++.+++.|.+..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 504 ~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~-~g~~~~ 553 (571)
T TIGR02203 504 SERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE-RGTHNE 553 (571)
T ss_pred HHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEe-eCCHHH
Confidence 99999999988877899999999999988899999999999988 455443
No 60
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=255.45 Aligned_cols=163 Identities=26% Similarity=0.505 Sum_probs=135.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--hhhhccCcEEEEccCC--CCcc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEP--VLFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~--~l~~ 84 (181)
+++|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ....++ .+||+||++ .+|+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~-~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK-KVGLVFQYPEYQLFE 98 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhh-ceEEEecCchhcccc
Confidence 46999999999999999999999999999999999999999999999999987543 223444 499999997 4567
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhccc--c-----------------------------ccccCCCCCCCHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAH--G-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~--~-----------------------------~~~~~P~~~LD~~ 127 (181)
.||+||+.++.. ... .+++.++++.+++. . ++.|+||++||+.
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 799999987531 112 23456677777764 2 2456699999999
Q ss_pred HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++..++++++++. + |.|||++|||++++.. ||||++|++|++++.
T Consensus 179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999998864 3 8999999999999854 999999999999873
No 61
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-38 Score=277.82 Aligned_cols=167 Identities=53% Similarity=0.799 Sum_probs=148.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++. ++|+||++.+|++|++
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~-i~~~~Q~~~lf~~Ti~ 431 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR-MALVPQDPVLFAASVM 431 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh-ceEEccCCccccccHH
Confidence 469999999999999999999999999999999999999999999999999998888887765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.+..++++++++++.+++.+ ++.|+||++||+.+
T Consensus 432 ~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 99999865556777777777655432 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
++.+++.++...+++|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus 512 ~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~-~g~~~ 559 (576)
T TIGR02204 512 EQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA-QGTHA 559 (576)
T ss_pred HHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe-eecHH
Confidence 9999999988777899999999999998899999999999998 45543
No 62
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-38 Score=246.45 Aligned_cols=165 Identities=52% Similarity=0.753 Sum_probs=134.6
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|++|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR-QIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh-hEEEeCCCCeeccccHHH
Confidence 6899999999999999999999999999999999999999999999999886655445554 499999999988889999
Q ss_pred HhhcCCCCCCHHHHHHH---------HHHh--cc-----------------------------ccccccCCCCCCCHHHH
Q psy10472 90 NIRYGDSSVSDEQIEEA---------AKLA--NA-----------------------------HGFISEFPSGALDNESE 129 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~---------~~~~--~~-----------------------------~~~~~~~P~~~LD~~~~ 129 (181)
|+.++..........+. ++.+ ++ .-++.|+|+++||+.++
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 174 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE 174 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 99886432222222221 1111 11 11356779999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 130 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 130 ~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
+.+.+.|+++.++.|||++||+++.+..||++++|++|++++ .++.
T Consensus 175 ~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~-~~~~ 220 (234)
T cd03251 175 RLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVE-RGTH 220 (234)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEee-eCCH
Confidence 999999998767899999999999987799999999999987 3443
No 63
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2e-38 Score=257.40 Aligned_cols=166 Identities=20% Similarity=0.402 Sum_probs=137.8
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....++ .+||+||++.+++. |
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-~~~~~~-~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-PKEVQR-NIGYLPEHNPLYLDMY 91 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-hHHHHh-ceEEecCCCCCCCCCc
Confidence 35699999999999999999999999999999999999999999999999988653 334444 49999999999876 9
Q ss_pred HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
+.||+.+... ... .++++++++.+++.. ++.|+|+++||+.+++.
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~ 171 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE 171 (301)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 9999976321 111 234566666666543 35677999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 132 VQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 132 i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+++.++.+++++|||++||+++++.. |||+++|++|+++. .++.
T Consensus 172 l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~-~g~~ 216 (301)
T TIGR03522 172 IRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA-DKKL 216 (301)
T ss_pred HHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence 99999988768999999999999866 99999999999987 4443
No 64
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.9e-38 Score=262.87 Aligned_cols=165 Identities=26% Similarity=0.461 Sum_probs=137.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc--ceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~--G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+.+|+++||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|+++...+.. + +.++|+||++.+|+.
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~-r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K-RGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H-CCEEEEECCcccCCCC
Confidence 468999999999999999999999999999999999999999 9999999998765542 2 349999999999986
Q ss_pred cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
||+||+.|+.. ... .+++.++++.+++.. ++.|+|+++||+..+.
T Consensus 95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~ 174 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174 (362)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 99999998632 112 234566777766544 3556799999999999
Q ss_pred HHHHHHHHhc-C--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 131 LVQAALESAC-K--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 131 ~i~~~l~~~~-~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+.+.|+++. + |.|+|+||||++++.. ||+|++|++|+++. .++++
T Consensus 175 ~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~ 224 (362)
T TIGR03258 175 NMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQ 224 (362)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence 9999998764 3 7899999999999865 99999999999987 45443
No 65
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-38 Score=232.74 Aligned_cols=168 Identities=28% Similarity=0.399 Sum_probs=140.7
Q ss_pred CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCC
Q psy10472 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEP 80 (181)
Q Consensus 4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~ 80 (181)
.....-.+|++|+|.|++||.++|+|||||||||||-+++|+..|++|+|.+.|+++.+++. ..+|.+.+|+|||.+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 34445679999999999999999999999999999999999999999999999999988874 356777899999999
Q ss_pred CCccc-cHHHHhhcCCC------CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472 81 VLFAT-SVRENIRYGDS------SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGAL 124 (181)
Q Consensus 81 ~l~~~-tv~enl~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L 124 (181)
.+++. |..||++.+.. ........+.++.+++.. ++.++||++|
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNL 177 (228)
T COG4181 98 HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL 177 (228)
T ss_pred eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCc
Confidence 99875 99999988631 111223444555544322 4678899999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 125 DNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
|..+-.++.+++-.+. .|.|+|+||||+..+.+|+|++.|.+|++++
T Consensus 178 D~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 178 DRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 9999999999987653 4999999999999999999999999999976
No 66
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=248.98 Aligned_cols=166 Identities=34% Similarity=0.467 Sum_probs=135.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~- 84 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++ .++|+||++.+|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR-QIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh-ccEEEcccCccccc
Confidence 469999999999999999999999999999999999999999999999998876542 23444 4999999998887
Q ss_pred ccHHHHhhcCCCC-----------C---CHHHHHHHHHHhcccc-----------------------------ccccCCC
Q psy10472 85 TSVRENIRYGDSS-----------V---SDEQIEEAAKLANAHG-----------------------------FISEFPS 121 (181)
Q Consensus 85 ~tv~enl~~~~~~-----------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~ 121 (181)
.|+.+|+.++... . ..+++.++++.+++.. ++.|+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 5999999864210 1 1223445565555432 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++||+.+++.+.+.|+++. .|+|||++|||++.+.. ||++++|++|++++. ++.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~ 229 (241)
T cd03256 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD-GPP 229 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee-cCH
Confidence 9999999999999998864 38999999999999975 999999999999873 443
No 67
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=260.38 Aligned_cols=163 Identities=27% Similarity=0.458 Sum_probs=135.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~- 84 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... +++ .++|+||++.+|+
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~-~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARR-QIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhc-CEEEEeCCCccCCC
Confidence 46999999999999999999999999999999999999999999999999987765432 244 4999999999887
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.|+.||+.++.. ... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 599999987521 111 233455666655533 355779999999999
Q ss_pred HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
..++++|+++. + |+|+|++||+++.+.. ||++++|++|++++.
T Consensus 177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999998864 3 8999999999999866 999999999999873
No 68
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-38 Score=254.45 Aligned_cols=166 Identities=23% Similarity=0.462 Sum_probs=135.7
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC----ChhhhccCcEEEEccCC--CCc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL----DGTWLRGNVIGLINQEP--VLF 83 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~~~i~~v~q~~--~l~ 83 (181)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... ....+++ .+||+||++ .+|
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK-KVGVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHh-hEEEEecCcchhcc
Confidence 599999999999999999999999999999999999999999999999998532 2233454 499999997 677
Q ss_pred cccHHHHhhcCCCC--CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHH
Q psy10472 84 ATSVRENIRYGDSS--VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 84 ~~tv~enl~~~~~~--~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~ 127 (181)
+.|+.||+.|+... .. ..++.++++.+++. . ++.|+||++||+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 78999999986321 11 22345666666653 2 2456799999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
++..+.++++++. +|.|||++|||++++.. ||+|++|++|++++ .++++
T Consensus 179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~ 229 (288)
T PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS-CGTPS 229 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence 9999999998865 58999999999998855 99999999999987 35443
No 69
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-38 Score=253.15 Aligned_cols=163 Identities=28% Similarity=0.453 Sum_probs=135.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc-ccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF-ATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~-~~t 86 (181)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. ++ ..|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH-KIGMVFQNPDNQFVGAT 98 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHh-hceEEEcChHHhccccc
Confidence 35999999999999999999999999999999999999999999999999987655555554 4999999983 44 569
Q ss_pred HHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
|.||+.++... .. .+++.++++.+++.. ++.|+||++||+.+++.
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 99999886321 12 234566666666543 35577999999999999
Q ss_pred HHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 132 VQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 132 i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+.++++++. + |+|||++||+++.+..||++++|++|+++..
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 999998864 3 8999999999999866999999999999873
No 70
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-38 Score=245.47 Aligned_cols=165 Identities=22% Similarity=0.374 Sum_probs=135.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++ .++|+||++.+++. |+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRR-RIGIVFQDLSVDDELTG 90 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhh-cEEEecCCccccccCcH
Confidence 56999999999999999999999999999999999999999999999999876432 33444 49999999988875 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
++|+.++.. ... .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 999976421 111 234456666665433 355779999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.++++. + ++|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 216 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTP 216 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCCh
Confidence 99998864 4 8999999999999865 99999999999987 3443
No 71
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-38 Score=246.07 Aligned_cols=164 Identities=24% Similarity=0.379 Sum_probs=135.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... .+++.++|+||++.+|+.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 46999999999999999999999999999999999999999999999999987765432 232359999999988875
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|++||+.++.. ... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 99999986321 111 234556666665533 355779999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+.+.++++++. +|+|||++||+++.+..+|++++|++|++++.
T Consensus 182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence 99999998863 48999999999999887789999999999874
No 72
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-38 Score=244.84 Aligned_cols=166 Identities=48% Similarity=0.764 Sum_probs=135.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+.+++++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS-MIGVVLQDTFLFSGTIM 94 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh-hEEEecCCchhhhhHHH
Confidence 35999999999999999999999999999999999999999999999999887655545554 49999999998888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
||+.++.......++.++++.+++ .-++.|+|+++||+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~ 174 (229)
T cd03254 95 ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174 (229)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 999886433333333332222111 1135677999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+++.++.+.+++|||++||+++.+..||++++|++|++++ .++.
T Consensus 175 ~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~-~~~~ 221 (229)
T cd03254 175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIE-EGTH 221 (229)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEE-eCCH
Confidence 9999999988767899999999999987799999999999987 3443
No 73
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.8e-38 Score=275.11 Aligned_cols=168 Identities=34% Similarity=0.598 Sum_probs=147.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+. ++|++|++.+|++|++
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR-LAVVSQTPFLFSDTVA 406 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh-eEEEccCCeeccccHH
Confidence 469999999999999999999999999999999999999999999999999988887777765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.+..++++++++++.+++.+ ++.|+||++||+++
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 99999865566677777766554322 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.++...+++|+|+|||+++.+..||++++|++|++++ .+++++
T Consensus 487 ~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 535 (569)
T PRK10789 487 EHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ-RGNHDQ 535 (569)
T ss_pred HHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEE-ecCHHH
Confidence 9999999988777899999999999988899999999999998 455443
No 74
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.6e-38 Score=248.41 Aligned_cols=166 Identities=36% Similarity=0.483 Sum_probs=134.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~- 84 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++ .++|+||++.+|+
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR-RIGMIFQHYNLIER 93 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh-heEEEcCCCccccc
Confidence 5699999999999999999999999999999999999999999999999988665432 2343 5999999998887
Q ss_pred ccHHHHhhcCCCC-----------C---CHHHHHHHHHHhcccc-----------------------------ccccCCC
Q psy10472 85 TSVRENIRYGDSS-----------V---SDEQIEEAAKLANAHG-----------------------------FISEFPS 121 (181)
Q Consensus 85 ~tv~enl~~~~~~-----------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~ 121 (181)
.|+.||+.++... . ..+++.++++.+++.. ++.|+||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4999999865211 0 1223455555555432 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++||+.+++.+.++|+++. + ++|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~ 230 (243)
T TIGR02315 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGAP 230 (243)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCCH
Confidence 9999999999999998863 3 8999999999999865 99999999999987 4443
No 75
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-38 Score=247.19 Aligned_cols=161 Identities=28% Similarity=0.433 Sum_probs=132.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+ +.++|++|++.+|+. |+
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~-~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QE-RNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cc-cceEEEecCCcccCCCCH
Confidence 569999999999999999999999999999999999999999999999998765432 23 349999999988864 99
Q ss_pred HHHhhcCCCC--C----C----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 88 RENIRYGDSS--V----S----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 88 ~enl~~~~~~--~----~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.||+.++... . . .+.+.++++.+++.. ++.|+|+++||+.+
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9999875311 1 1 123445565555432 35677999999999
Q ss_pred HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++.+.+++.++. + |+|||++||+++.+.. ||++++|++|++++.
T Consensus 172 ~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 999999998864 3 8999999999998865 999999999999873
No 76
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6.7e-38 Score=246.22 Aligned_cols=163 Identities=59% Similarity=0.899 Sum_probs=132.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++ .++|+||++.+++.|++
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS-QIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh-hEEEECCchhhhhhhHH
Confidence 45999999999999999999999999999999999999999999999999886555444444 49999999988878999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhc----------------------------------------cccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLAN----------------------------------------AHGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~P~~~LD~~~ 128 (181)
||+.++......+.....++..+ ..-++.|+|+++||+.+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 99988643222222222111110 11145677999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
++.+.+.|+.+.+|+|+|++||+++.+..||++++|++|++++.
T Consensus 175 ~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 175 EKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 99999999887678999999999999877999999999999873
No 77
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-38 Score=243.98 Aligned_cols=160 Identities=30% Similarity=0.471 Sum_probs=132.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++ .++|+||++.+++ .|+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~-~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERR-NIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhc-cEEEEcCchhhccCCcH
Confidence 569999999999999999999999999999999999999999999999998865432 233 4999999998886 499
Q ss_pred HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.++... .. .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 9999875211 11 223455566555432 356779999999999999
Q ss_pred HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+++++++. .|+|||++|||++++.. ||++++|++|++++
T Consensus 170 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99998864 38999999999998865 99999999999876
No 78
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-38 Score=247.36 Aligned_cols=163 Identities=33% Similarity=0.547 Sum_probs=136.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR-KIGMVFQQPHLFEGTVK 94 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh-cEEEEecCchhchhhHH
Confidence 46899999999999999999999999999999999999999999999999987655445554 49999999998888999
Q ss_pred HHhhcCCCC--CCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 89 ENIRYGDSS--VSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 89 enl~~~~~~--~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
||+.++... ....++.++++.+++. . ++.|+|+++||+.+++.+.+.|
T Consensus 95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (241)
T PRK14250 95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174 (241)
T ss_pred HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 999875321 1233455566666553 2 3557799999999999999999
Q ss_pred HHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 137 ESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 137 ~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+. .|.|||++|||++.+.. ||++++|++|++++.
T Consensus 175 ~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 8864 38999999999999865 999999999999873
No 79
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.1e-38 Score=243.50 Aligned_cols=161 Identities=27% Similarity=0.443 Sum_probs=134.0
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
.+++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ...++ .++|+||++.+++ .|
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~-~i~~~~q~~~~~~~~t 88 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALR-RIGALIEAPGFYPNLT 88 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHh-hEEEecCCCccCccCc
Confidence 35699999999999999999999999999999999999999999999999887543 23343 4999999998886 59
Q ss_pred HHHHhhcCCC--CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 87 VRENIRYGDS--SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 87 v~enl~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
+.||+.++.. ....+++.++++.+++.. ++.|+||++||+.+++.+.++
T Consensus 89 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 168 (208)
T cd03268 89 ARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL 168 (208)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHH
Confidence 9999977521 123445566666555432 356789999999999999999
Q ss_pred HHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 136 LESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 136 l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++++. +++|+|++|||++.+.. ||++++|++|++++
T Consensus 169 l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 169 ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 98865 58999999999999865 99999999999876
No 80
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.6e-38 Score=280.74 Aligned_cols=168 Identities=46% Similarity=0.745 Sum_probs=149.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+. ++||+|++.+|++|++
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~-i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ-MGVVLQENVLFSRSIR 548 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh-CeEEccCCeehhhhHH
Confidence 459999999999999999999999999999999999999999999999999999988888875 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.+..+.+++.++++.+++.+ ++.|+||++||+.+
T Consensus 549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 99999865566777777777655433 24566999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++ .+++++
T Consensus 629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~-~g~~~~ 677 (694)
T TIGR01846 629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE-SGRHEE 677 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE-eCCHHH
Confidence 9999999998877899999999999998899999999999998 565544
No 81
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-38 Score=261.85 Aligned_cols=164 Identities=28% Similarity=0.486 Sum_probs=136.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+.. ++ .++|+||++.+|+. ||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~-~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ER-GVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HC-CEEEEeCCcccCCCCCH
Confidence 4689999999999999999999999999999999999999999999999998765432 23 49999999999975 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.|+.. ... .+++.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l 172 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (369)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 999998632 111 234566666666543 355779999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.|+++. + +.|+|+||||++++.. ||++++|++|++++ .+++
T Consensus 173 ~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~ 218 (369)
T PRK11000 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKP 218 (369)
T ss_pred HHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCH
Confidence 99998864 3 8999999999998865 99999999999987 3443
No 82
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=261.95 Aligned_cols=165 Identities=28% Similarity=0.486 Sum_probs=136.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++. ++ .+||+||++.+|+. ||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~--~r-~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--QR-PINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HC-CEEEEeCCCccCCCCCH
Confidence 4689999999999999999999999999999999999999999999999998765532 33 49999999999986 99
Q ss_pred HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.||+.|+... .. .+++.++++.+++.. ++.|+|+++||+..++.+
T Consensus 109 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l 188 (377)
T PRK11607 109 EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999987321 12 234556666666543 355779999999999999
Q ss_pred HHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+.++++ + .|.|+|+||||++++.. ||++++|++|++++ .++++
T Consensus 189 ~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~ 235 (377)
T PRK11607 189 QLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPE 235 (377)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHH
Confidence 9888775 3 38999999999999865 99999999999987 45443
No 83
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-38 Score=263.59 Aligned_cols=163 Identities=28% Similarity=0.438 Sum_probs=136.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~ 85 (181)
..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+... .+++.++|+||++.+|+.
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~ 120 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence 45899999999999999999999999999999999999999999999999987765433 233459999999999975
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.||+.++.. ... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 99999987531 111 234556666666543 355779999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 130 KLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.+.+.|.++. .++|||+||||++++.. ||++++|++|+++.
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 99999998864 48999999999999865 99999999999987
No 84
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5e-38 Score=243.89 Aligned_cols=160 Identities=21% Similarity=0.413 Sum_probs=133.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+++ .++|+||++.+|+. |+.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-PAEARR-RLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-HHHHHh-hEEEecCCcccCcCCCHH
Confidence 699999999999999999999999999999999999999999999999988642 334444 49999999998885 999
Q ss_pred HHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 89 ENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 89 enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
||+.+... ... .+++.++++.+++.. ++.|+|+++||+.+++.+.
T Consensus 97 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 176 (218)
T cd03266 97 ENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 99976421 111 233455666555432 3567899999999999999
Q ss_pred HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 177 ~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9998864 58999999999998865 99999999999876
No 85
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-38 Score=245.62 Aligned_cols=165 Identities=32% Similarity=0.509 Sum_probs=135.0
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-c
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA-T 85 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~-~ 85 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++ .++|+||++.+|+ .
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARR-RIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh-heEEEccCcccCCCC
Confidence 7999999999999999999999999999999999999999999999999987654322 233 4999999999987 4
Q ss_pred cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
|+.||+.++.. ... .+.+.++++.+++.. ++.|+|+++||+.++.
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 99999986421 111 223455565555432 3567799999999999
Q ss_pred HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.+.++++. + |+|||++||+++.+.. ||++++|++|++++. ++.
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~ 225 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE-GTV 225 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCH
Confidence 9999998864 3 8999999999999865 999999999999873 443
No 86
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-38 Score=254.43 Aligned_cols=165 Identities=22% Similarity=0.412 Sum_probs=133.9
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC------------------------Ch
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL------------------------DG 65 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~------------------------~~ 65 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 599999999999999999999999999999999999999999999998765211 12
Q ss_pred hhhccCcEEEEccCC--CCccccHHHHhhcCCC--CCC----HHHHHHHHHHhccc-c----------------------
Q psy10472 66 TWLRGNVIGLINQEP--VLFATSVRENIRYGDS--SVS----DEQIEEAAKLANAH-G---------------------- 114 (181)
Q Consensus 66 ~~~r~~~i~~v~q~~--~l~~~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~-~---------------------- 114 (181)
..+++ .+||+||++ .+|..||+||+.|+.. ... .+++.++++.+++. .
T Consensus 101 ~~~~~-~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 101 KEIRR-RVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHh-ceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 23444 599999986 5666799999998632 112 23456677777764 2
Q ss_pred -------ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 115 -------FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 115 -------~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++.|+||++||+.++..+++.|+++. +|+|||+||||++.+.. ||||++|++|++++ .++.
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~-~g~~ 249 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK-DGDT 249 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEE-ECCH
Confidence 35567999999999999999998864 58999999999998755 99999999999987 3443
No 87
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-38 Score=253.32 Aligned_cols=163 Identities=29% Similarity=0.460 Sum_probs=134.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC----ChhhhccCcEEEEccCC--CC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL----DGTWLRGNVIGLINQEP--VL 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~~~i~~v~q~~--~l 82 (181)
+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .....++ .+||+||++ .+
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK-KVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh-hEEEEeeCchhhh
Confidence 4599999999999999999999999999999999999999999999999988532 2233444 499999997 56
Q ss_pred ccccHHHHhhcCCCC--CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472 83 FATSVRENIRYGDSS--VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 83 ~~~tv~enl~~~~~~--~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~ 126 (181)
|+.||.||+.|+... .. .+++.++++.+++. . ++.|+||++||+
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 777999999876321 12 23456667777664 2 245679999999
Q ss_pred HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.++..+.++++++. + |.|||++|||++.+.. ||||++|++|++++.
T Consensus 179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999998874 3 8999999999999865 999999999999873
No 88
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1e-37 Score=250.10 Aligned_cols=166 Identities=24% Similarity=0.441 Sum_probs=140.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++...+...+|++ ++|+||++.+|+.|++
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~-i~~v~q~~~lf~~tv~ 94 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA-FGVIPQKVFIFSGTFR 94 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh-EEEECCCcccchhhHH
Confidence 468999999999999999999999999999999999997 78999999999987776667654 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
+|+.+.. ....++++++++.+++.. ++.|+||++||+.+
T Consensus 95 ~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~ 173 (275)
T cd03289 95 KNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173 (275)
T ss_pred HHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 9996432 234455666666555432 24566999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.|++..+++|||+|||+++.+..||||++|++|++++ .+++++
T Consensus 174 ~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~-~g~~~~ 222 (275)
T cd03289 174 YQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQ-YDSIQK 222 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEee-cCCHHH
Confidence 9999999998767899999999999887799999999999998 455543
No 89
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-37 Score=241.57 Aligned_cols=162 Identities=36% Similarity=0.582 Sum_probs=133.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++...+....++ .++|+||++.+|+.|+.
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~ 95 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR-NIGYVPQDVTLFYGTLR 95 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh-hEEEeCCCCccccchHH
Confidence 45999999999999999999999999999999999999999999999999876555444444 49999999988878999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~ 128 (181)
||+.++......+.+.++++.+++. -++.|+||++||+.+
T Consensus 96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~ 175 (220)
T cd03245 96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175 (220)
T ss_pred HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 9998763322333333333332221 135577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
++.+++.|+++.+++|||++||+++.+..||++++|++|++++
T Consensus 176 ~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 176 EERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 9999999998765689999999999876699999999999876
No 90
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=245.20 Aligned_cols=164 Identities=21% Similarity=0.310 Sum_probs=133.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.....++.++|+||++.+++. |+
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 56999999999999999999999999999999999999999999999999987655433222349999999988875 99
Q ss_pred HHHhhcCCCC---CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 88 RENIRYGDSS---VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 88 ~enl~~~~~~---~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
.||+.+.... .. ...+.++++.+++.. ++.|+||++||+.+++.
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (241)
T PRK10895 96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175 (241)
T ss_pred HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 9999875211 11 123445555544322 35677999999999999
Q ss_pred HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+++..+. +|.|+|++||+++.+.. ||++++|++|++++.
T Consensus 176 l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 176 IKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred HHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 999998765 48999999999988865 999999999999873
No 91
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-38 Score=251.74 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=135.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-C-cccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-L-FATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l-~~~t 86 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++. + +..|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR-QVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhh-heEEEEeCHHHhccccc
Confidence 45999999999999999999999999999999999999999999999999987665544444 4999999983 4 4569
Q ss_pred HHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
+.||+.++... .. .+++.++++.+++.. ++.|+|+++||+.+++.
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 99999875211 11 233556666655543 35577999999999999
Q ss_pred HHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 132 VQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 132 i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
++++|+++. + |+|||++||+++.+..||++++|++|++++.
T Consensus 179 l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 179 VLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 999998865 3 8999999999999877999999999999873
No 92
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.1e-38 Score=244.29 Aligned_cols=162 Identities=29% Similarity=0.429 Sum_probs=132.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... ++++.++|+||++.+|+.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 46999999999999999999999999999999999999999999999999987665432 232359999999988864
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|++||+.++.. ... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 99999986321 111 223455565555432 356779999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEE
Q psy10472 130 KLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIV 170 (181)
Q Consensus 130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~ 170 (181)
+.+.++|+++. .++|+|++|||++.+..||++++|++|+++
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999998864 379999999999988779999999999875
No 93
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-38 Score=255.25 Aligned_cols=167 Identities=23% Similarity=0.361 Sum_probs=135.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC----------------ChhhhccCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL----------------DGTWLRGNV 72 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~----------------~~~~~r~~~ 72 (181)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+++ .
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 117 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR-R 117 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHh-c
Confidence 3599999999999999999999999999999999999999999999999987542 1233454 4
Q ss_pred EEEEccCC--CCccccHHHHhhcCCC--CCCH----HHHHHHHHHhccc-c-----------------------------
Q psy10472 73 IGLINQEP--VLFATSVRENIRYGDS--SVSD----EQIEEAAKLANAH-G----------------------------- 114 (181)
Q Consensus 73 i~~v~q~~--~l~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~-~----------------------------- 114 (181)
++|+||++ .+|+.|++||+.++.. .... +++.++++.+++. .
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998 5777899999988632 1121 2345566666653 2
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEeecCCch
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~~~~~~ 177 (181)
++.|+||++||+.+++.+.++|.++. +|+|||+||||++.+. .||++++|++|++++ .++++
T Consensus 198 LLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~-~g~~~ 261 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK-TGTPY 261 (320)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHH
Confidence 35567999999999999999998764 5899999999999885 599999999999998 45443
No 94
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9e-38 Score=244.35 Aligned_cols=164 Identities=23% Similarity=0.357 Sum_probs=133.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+++.++|+||++.+|+. |+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence 46999999999999999999999999999999999999999999999999987665443323359999999998876 99
Q ss_pred HHHhhcCCCC--CC-HHHHHHHHHHhc-cc-----------------------------cccccCCCCCCCHHHHHHHHH
Q psy10472 88 RENIRYGDSS--VS-DEQIEEAAKLAN-AH-----------------------------GFISEFPSGALDNESEKLVQA 134 (181)
Q Consensus 88 ~enl~~~~~~--~~-~~~~~~~~~~~~-~~-----------------------------~~~~~~P~~~LD~~~~~~i~~ 134 (181)
.+|+.++... .. .+...++++.++ +. -++.|+|+++||+.+++.+.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~ 172 (230)
T TIGR03410 93 EENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172 (230)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence 9999865211 11 222234443332 11 145678999999999999999
Q ss_pred HHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 135 ALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 135 ~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+|.++. + ++|+|++||+++++.. ||++++|++|++++.
T Consensus 173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 998864 3 7999999999999976 999999999999873
No 95
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-38 Score=250.32 Aligned_cols=165 Identities=27% Similarity=0.447 Sum_probs=134.8
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~ 84 (181)
.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .+++.++|+||++.+|+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 356899999999999999999999999999999999999999999999999887654332 23345999999998886
Q ss_pred -ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 85 -TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 85 -~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.|+.||+.++.. ... .+++.++++.+++.. ++.|+||++||+.+
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~ 195 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI 195 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 499999987421 111 233455666655433 35677999999999
Q ss_pred HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++.+.+++.++. + |+|+|++||+++.+.. ||++++|++|++++.
T Consensus 196 ~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 196 RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999998864 3 8999999999998865 999999999999873
No 96
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6e-38 Score=297.40 Aligned_cols=168 Identities=33% Similarity=0.530 Sum_probs=151.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.|||.++.+++...+|++ |++|||+|.+|++|++
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~-IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV-LGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc-cEEECCCCccccccHH
Confidence 469999999999999999999999999999999999999999999999999999999999876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++. ..++++++++++.+++.+ ++.|+||++||.++
T Consensus 1331 eNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1331 FNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred HHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 9999875 457788888888776544 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+++| .++++++
T Consensus 1410 e~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE-~Gt~~eL 1459 (1622)
T PLN03130 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE-FDTPENL 1459 (1622)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999998878999999999999999999999999999999 5666543
No 97
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.6e-38 Score=255.02 Aligned_cols=162 Identities=27% Similarity=0.407 Sum_probs=132.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++ .+||+||++.+++. |+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~-~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARV-AIGVVPQFDNLDPEFTV 94 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhh-cEEEEeccccCCcCCcH
Confidence 46999999999999999999999999999999999999999999999999875432 33344 49999999988864 99
Q ss_pred HHHhhcCC--CCCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGD--SSVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~--~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.||+.+.. ..... +.+.++++.+++.. ++.|+||++||+.+++.+
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 99997531 11121 23345555554432 356779999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++++++. +|.|||++||+++++.. ||++++|++|+++..
T Consensus 175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99998864 58999999999999965 999999999999873
No 98
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-38 Score=245.39 Aligned_cols=168 Identities=22% Similarity=0.339 Sum_probs=134.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++.+|+. |+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 56999999999999999999999999999999999999999999999999987665443333459999999998875 99
Q ss_pred HHHhhcCCCCCC----HHHHHHHHHHh-cccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 88 RENIRYGDSSVS----DEQIEEAAKLA-NAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 88 ~enl~~~~~~~~----~~~~~~~~~~~-~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
.+|+.++..... .+.+.++++.+ ++.. ++.|+||++||+.+++.+.
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~ 177 (237)
T PRK11614 98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF 177 (237)
T ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence 999987531111 12233333333 1211 3567899999999999999
Q ss_pred HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+.++++. +|.|+|++||+++++.. ||++++|++|++++ .++.+
T Consensus 178 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 222 (237)
T PRK11614 178 DTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL-EDTGD 222 (237)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe-eCCHH
Confidence 9998864 58999999999998755 99999999999987 44443
No 99
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.8e-38 Score=262.06 Aligned_cols=168 Identities=23% Similarity=0.411 Sum_probs=137.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE----ECCCCChhh---hccCcEEEEccCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV----DLKHLDGTW---LRGNVIGLINQEP 80 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~----~i~~~~~~~---~r~~~i~~v~q~~ 80 (181)
...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+ ++...+... .|++.++|+||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 356899999999999999999999999999999999999999999999997 454444332 3444699999999
Q ss_pred CCcc-ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472 81 VLFA-TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGAL 124 (181)
Q Consensus 81 ~l~~-~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L 124 (181)
.+|+ .|++||+.++.. ... .+++.++++.+++.. ++.|+|+++|
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 9998 499999987631 111 234456677666543 3557799999
Q ss_pred CHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 125 DNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
|+.++..+.+.+.++. + ++|+|+||||++++.. ||++++|++|++++ .++.
T Consensus 196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~ 249 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTP 249 (382)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCH
Confidence 9999999999998764 3 8999999999999855 99999999999988 3443
No 100
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-38 Score=252.41 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=134.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCC--CC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEP--VL 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~--~l 82 (181)
+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++ .|||+||++ .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~ig~v~q~~~~~l 98 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRK-RIGMVFQFPESQL 98 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh-heEEEecChHhcc
Confidence 36999999999999999999999999999999999999999999999999986432 223454 499999997 56
Q ss_pred ccccHHHHhhcCCCC--CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472 83 FATSVRENIRYGDSS--VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 83 ~~~tv~enl~~~~~~--~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~ 126 (181)
|+.|+.||+.++... .. .+++.++++.+++. . ++.|+|+++||+
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 777999999886311 12 23345666666664 2 355679999999
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.++..+.++++++. .|+|||+||||++.+.. |||+++|++|++++.
T Consensus 179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999998864 48999999999999854 999999999999873
No 101
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=246.51 Aligned_cols=163 Identities=27% Similarity=0.468 Sum_probs=135.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+....++ .++|+||++.+|+.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~i~~~~q~~~l~~~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK-NVGMVFQQPNVFVK 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh-hEEEEecCCccccc
Confidence 469999999999999999999999999999999999974 79999999999987665445554 49999999999988
Q ss_pred cHHHHhhcCCC--C---C---CHHHHHHHHHHhcccc---------------------------------ccccCCCCCC
Q psy10472 86 SVRENIRYGDS--S---V---SDEQIEEAAKLANAHG---------------------------------FISEFPSGAL 124 (181)
Q Consensus 86 tv~enl~~~~~--~---~---~~~~~~~~~~~~~~~~---------------------------------~~~~~P~~~L 124 (181)
|++||+.++.. . . ..+++.++++.+++.. ++.|+|+++|
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999987521 1 0 1123455666666521 3456799999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+.++..+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 174 D~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 174 DPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 999999999999887668999999999998865 999999999999873
No 102
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.2e-38 Score=232.61 Aligned_cols=156 Identities=36% Similarity=0.519 Sum_probs=134.4
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR 92 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~ 92 (181)
..+++|++||+++|+|||||||||||++|+|+..|.+|+|.|+|++.+..++.+ + -++++||+.++|.. ||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--R-PVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--R-PVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--C-Chhhhhhccccchhhhhhhhhc
Confidence 578899999999999999999999999999999999999999999998766553 2 38999999999986 9999999
Q ss_pred cCCCC------CCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHHHHHHHH
Q psy10472 93 YGDSS------VSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 93 ~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
++.+. ..+++++.++..+++.++ +.|+||++|||.-+.++..++.
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~ 173 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVS 173 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHH
Confidence 98532 134556777777766553 4566999999999999999998
Q ss_pred Hhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++ ++.|++||||.++.+.. +|+++++++|+|.+.
T Consensus 174 ~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~ 211 (231)
T COG3840 174 QLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQ 211 (231)
T ss_pred HHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEee
Confidence 875 48999999999999976 999999999999873
No 103
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.6e-38 Score=296.80 Aligned_cols=168 Identities=30% Similarity=0.481 Sum_probs=151.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++...+|++ |+||||+|.+|++|++
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~-i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV-LSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh-cEEECCCCeeeCccHH
Confidence 469999999999999999999999999999999999999999999999999999998888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++. ..++++++++++.+++.+ ++.|+||++||+++
T Consensus 1328 ~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1328 FNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred HHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 9999874 467788888888766543 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+++| .++++++
T Consensus 1407 e~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE-~Gt~~eL 1456 (1495)
T PLN03232 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLE-YDSPQEL 1456 (1495)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999998778999999999999999999999999999999 5666543
No 104
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=252.44 Aligned_cols=167 Identities=31% Similarity=0.470 Sum_probs=141.8
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc-c
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~-t 86 (181)
-++|+||+|+.||+++|+|-||||||||+|++++|++|++|+|.++|.++..++.. .+|++.+++|||++.|+|. |
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 57899999999999999999999999999999999999999999999999988865 4567789999999999986 9
Q ss_pred HHHHhhcCCCC------CCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDSS------VSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~ 131 (181)
|.||+.|+..- ..+++..++++.+++.++ +.++||++|||--+.+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 99999998532 123345566777766553 4566999999999999
Q ss_pred HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472 132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 178 (181)
+.+.|.++. + ++|||+||||++++-. .|||.+|++|+|+. -+++++
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ-~Gtp~e 251 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ-VGTPEE 251 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE-eCCHHH
Confidence 998887654 3 8999999999999866 99999999999998 465543
No 105
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=247.48 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=134.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++..++|+||++.+|+. |+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 46999999999999999999999999999999999999999999999999987665444433458999999999885 99
Q ss_pred HHHhhcCCCC------------------CC---HHHHHHHHHHhcccc-----------------------------ccc
Q psy10472 88 RENIRYGDSS------------------VS---DEQIEEAAKLANAHG-----------------------------FIS 117 (181)
Q Consensus 88 ~enl~~~~~~------------------~~---~~~~~~~~~~~~~~~-----------------------------~~~ 117 (181)
.||+.++... .. .+.+.++++.+++.. ++.
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 177 (255)
T PRK11300 98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177 (255)
T ss_pred HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999874210 00 123344555554432 356
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 118 EFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 118 ~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
|+|+++||+.+++.+.++|.++. + |+|||++||+++.+.. ||++++|++|+++.
T Consensus 178 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 178 DEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 77999999999999999998864 3 8999999999999865 99999999999987
No 106
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-38 Score=242.16 Aligned_cols=160 Identities=28% Similarity=0.440 Sum_probs=133.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++++++||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++ .++|+||++.+|+. |+
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRR-RIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHh-heEEecCCCcccccCCH
Confidence 46999999999999 99999999999999999999999999999999999876554 44444 49999999998875 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.||+.+... ... .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 169 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999976321 111 234455666555432 356779999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+.++++.++.|+|++|||++.+.. ||++++|++|++++
T Consensus 170 ~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred HHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999987667999999999999865 99999999999976
No 107
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-37 Score=242.56 Aligned_cols=162 Identities=51% Similarity=0.770 Sum_probs=133.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|+.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR-AIGVVPQDTVLFNDTIG 92 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh-hEEEECCCChhhcchHH
Confidence 45999999999999999999999999999999999999999999999999987665555554 49999999999988999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
||+.++........+..+++.+++ .-++.|+|+++||+.+
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 999886432222222221111110 1135677999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
++.+.++|.++.+|.|+|++||+++.+..||++++|++|++++
T Consensus 173 ~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~ 215 (236)
T cd03253 173 EREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence 9999999988756899999999999987799999999999987
No 108
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.5e-37 Score=272.02 Aligned_cols=168 Identities=42% Similarity=0.656 Sum_probs=145.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+. ++|++|++.+|++|++
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS-IATVFQDAGLFNRSIR 426 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh-eEEEccCCccCcccHH
Confidence 458999999999999999999999999999999999999999999999999988887777765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.+..++++++++++.+++.+ ++.|+||++||+.+
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 99999865455666655554432221 34567999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.+.+..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 507 ~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 555 (585)
T TIGR01192 507 EARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE-KGSFQE 555 (585)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence 9999999988777899999999999998899999999999988 455443
No 109
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=249.20 Aligned_cols=162 Identities=27% Similarity=0.494 Sum_probs=133.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-hhhccCcEEEEccCCC--Cccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TWLRGNVIGLINQEPV--LFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~--l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..+++ .++|+||++. ++..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK-LVGIVFQNPETQFVGR 93 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh-heEEEEEChhhhcccc
Confidence 459999999999999999999999999999999999999999999999998865543 33444 5999999985 3456
Q ss_pred cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
|+.||+.++... .. .+.+.++++.+++.. ++.|+||++||+.++.
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 173 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 999999875321 11 233455566555433 3567799999999999
Q ss_pred HHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 131 LVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
.+++.++++. +|.|||++|||++.+..||++++|++|++++
T Consensus 174 ~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~ 215 (274)
T PRK13644 174 AVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL 215 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEE
Confidence 9999998865 5899999999999986699999999999987
No 110
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.5e-37 Score=233.53 Aligned_cols=157 Identities=32% Similarity=0.519 Sum_probs=130.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|++
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD-HVGYLPQDDELFSGSIA 93 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh-heEEECCCCccccCcHH
Confidence 45999999999999999999999999999999999999999999999999987766555554 49999999988888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~ 166 (181)
||+ + +....+++.-+...+ +..-++.|+|+++||+.++..+.+.++++. +|+|+|++|||++.+..||++++|++
T Consensus 94 ~~l-L--S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 170 (173)
T cd03246 94 ENI-L--SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLED 170 (173)
T ss_pred HHC-c--CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 998 2 112233333222222 334467899999999999999999998875 48999999999998867999999999
Q ss_pred CeE
Q psy10472 167 GQI 169 (181)
Q Consensus 167 G~i 169 (181)
|++
T Consensus 171 G~i 173 (173)
T cd03246 171 GRV 173 (173)
T ss_pred CCC
Confidence 974
No 111
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.5e-37 Score=242.05 Aligned_cols=162 Identities=25% Similarity=0.387 Sum_probs=133.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~- 84 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +++ .++|+||++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR-QIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh-heEEEecCcccccc
Confidence 56999999999999999999999999999999999999999999999999887654322 343 5999999998765
Q ss_pred ccHHHHhhcCC--CCCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGD--SSVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~--~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.|+.||+.++. ..... +++.++++.+++.. ++.|+|+++||+.++
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 59999998752 11111 23445555555432 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.+.++++++. ++.|+|++||+++++.. ||++++|++|+++.
T Consensus 174 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 174 EGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999998864 58999999999999976 99999999999875
No 112
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1e-37 Score=241.31 Aligned_cols=160 Identities=31% Similarity=0.479 Sum_probs=132.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. + +.++|+||++.+++. |+
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--D-RDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--c-ceEEEEecChhhccCCCH
Confidence 4699999999999999999999999999999999999999999999999998654332 2 349999999988864 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.++.. ... .+++.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 169 (213)
T cd03301 90 YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169 (213)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987521 111 223445555555432 356779999999999999
Q ss_pred HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+.++++. .++|+|++|||++++.. ||++++|++|++++
T Consensus 170 ~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 99998864 38999999999999866 99999999999986
No 113
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=232.06 Aligned_cols=167 Identities=24% Similarity=0.350 Sum_probs=141.1
Q ss_pred CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
+.....++|+++||.+.+||+++|+||||||||||+|+++.|.+|++|+++|.|++++.+.+..+|++ |+|+.|.|.||
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~-VsY~~Q~paLf 89 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ-VSYCAQTPALF 89 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHH-HHHHHcCcccc
Confidence 34455789999999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred cccHHHHhhcCC----CCCCHHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHH
Q psy10472 84 ATSVRENIRYGD----SSVSDEQIEEAAKLANAH------------------------------GFISEFPSGALDNESE 129 (181)
Q Consensus 84 ~~tv~enl~~~~----~~~~~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~ 129 (181)
+.||++|+.|+. ...+.......+..+++. -++.++||++||+.++
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 999999999973 222333333333333322 2466889999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCchhhh-cCCeEEEEeCCeEEe
Q psy10472 130 KLVQAALESAC--KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVE 171 (181)
Q Consensus 130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~ 171 (181)
+.+.+++.++. ++.++++||||..++- .+|+++.+..|++-+
T Consensus 170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999998864 4899999999999964 599999999998754
No 114
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-37 Score=240.98 Aligned_cols=159 Identities=32% Similarity=0.584 Sum_probs=130.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~t 86 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. ++..|
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR-KVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHh-hceEEecChhhhcCCCc
Confidence 56999999999999999999999999999999999999999999999999887655444454 4999999984 44569
Q ss_pred HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
+.||+.++.. ... .+.+.++++.+++.. ++.|+||++||+.+++.
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 9999987421 111 223445555555432 35677999999999999
Q ss_pred HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472 132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 168 (181)
Q Consensus 132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~ 168 (181)
+.+.++++. +++|+|++|||++++.. ||++++|++|+
T Consensus 173 ~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999998865 48999999999999976 99999999985
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.1e-37 Score=241.12 Aligned_cols=160 Identities=29% Similarity=0.477 Sum_probs=131.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++ .++|+||++.+|+.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR-KIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH-heEEEecCchhccC
Confidence 4699999999999999999999999999999999999999999999999988765432 2343 49999999998875
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.||+.++.. ... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 99999987521 111 223455565555432 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i 169 (181)
+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 173 ~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 173 WEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999998864 58999999999999875 999999999974
No 116
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.2e-37 Score=269.09 Aligned_cols=169 Identities=36% Similarity=0.571 Sum_probs=145.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+. ++|+||++.+|++|++
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~-i~~v~q~~~lf~~ti~ 409 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH-IGYLPQDVELFPGTVA 409 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh-eEEecCCcccccccHH
Confidence 468999999999999999999999999999999999999999999999999988887777764 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++....+++++.++++.+++.+ ++.|+||++||+++
T Consensus 410 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 410 ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 99987654455666666655443221 34567999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
++.+.+.+.... +++|+|++||+++.+..||+|++|++|++++ .+++++.
T Consensus 490 ~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~-~g~~~~l 540 (544)
T TIGR01842 490 EQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIAR-FGERDEV 540 (544)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEe-eCCHHHH
Confidence 999999998875 5899999999999887799999999999998 5665543
No 117
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.1e-37 Score=241.30 Aligned_cols=159 Identities=28% Similarity=0.456 Sum_probs=131.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++ .++|+||++.+|+.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR-RIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh-heEEEecChhhccC
Confidence 4699999999999999999999999999999999999999999999999998765432 2333 49999999998874
Q ss_pred -cHHHHhhcCCC--CC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.||+.++.. .. ..+++.++++.+++.. ++.|+||++||+.++
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 99999987421 11 1234455565555432 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 168 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~ 168 (181)
..+.+.++++. +++|+|++||+++++.. ||++++|++|+
T Consensus 174 ~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999998864 58999999999999876 99999999985
No 118
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-37 Score=244.80 Aligned_cols=163 Identities=25% Similarity=0.471 Sum_probs=133.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh--hhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG--TWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~--~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++ .++|+||++.+++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ-EAGMVFQQFYLFPHL 92 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh-ceEEEecccccCCCC
Confidence 469999999999999999999999999999999999999999999999998865322 23343 49999999988874
Q ss_pred cHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 SVRENIRYGDS---SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.+|+.++.. ... .+.+.++++.+++.. ++.|+||++||+.++
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99999987521 111 123445555555432 355779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+.++++++. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus 173 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 173 HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999998864 58999999999999965 999999999999873
No 119
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.8e-37 Score=245.18 Aligned_cols=163 Identities=31% Similarity=0.501 Sum_probs=134.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+.+++++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... .....++ .++|+||++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~ 92 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRR-RVGMVFQKPN 92 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHh-heEEEecCcc
Confidence 46899999999999999999999999999999999999998 99999999988643 2223343 5999999998
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH----G-----------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~ 121 (181)
+|+.|+.||+.++.. . .. .+.+.++++.+++. . ++.|+||
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 888899999986421 1 11 23345566666654 2 3456799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++++++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999987656899999999998865 999999999999873
No 120
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.6e-37 Score=248.47 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=133.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++ .++|+||++.+|+.
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~~~ 98 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK-RMSMLFQSGALFTD 98 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh-cEEEEecccccCCC
Confidence 4689999999999999999999999999999999999999999999999988665432 2233 49999999998875
Q ss_pred -cHHHHhhcCCC---CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 86 -SVRENIRYGDS---SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 86 -tv~enl~~~~~---~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
|+.||+.++.. .... +.+.++++.+++.. ++.|+||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 99999976421 1111 23344555555432 35677999999999
Q ss_pred HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++.+.++++++. + |+|||++|||++.+.. ||++++|++|++++.
T Consensus 179 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 999999998864 3 7999999999998866 999999999999873
No 121
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=250.08 Aligned_cols=166 Identities=28% Similarity=0.439 Sum_probs=134.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCC--CC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEP--VL 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~--~l 82 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....++ .++|+||++ .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig~v~q~~~~~~ 98 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRK-KVSLVFQFPEAQL 98 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh-ceEEEEeChhhhh
Confidence 46999999999999999999999999999999999999999999999999885421 223333 599999997 46
Q ss_pred ccccHHHHhhcCCC--CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472 83 FATSVRENIRYGDS--SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 83 ~~~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~ 126 (181)
|+.|+.||+.++.. ... .+++.++++.+++. . ++.|+|+++||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 66799999986421 111 23356666666664 2 355779999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+++.+.++++++. +|.|||++|||++.+.. ||++++|++|++++ .++.
T Consensus 179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~ 229 (287)
T PRK13641 179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK-HASP 229 (287)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence 99999999998875 58999999999999865 99999999999987 3443
No 122
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.3e-37 Score=241.71 Aligned_cols=162 Identities=28% Similarity=0.444 Sum_probs=133.4
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc-
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~- 85 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .+++.++|+||++.+++.
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 4899999999999999999999999999999999999999999999999987655432 233359999999988875
Q ss_pred cHHHHhhcCC--CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGD--SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~--~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
|+.||+.++. .... .+++.++++.+++.. ++.|+||++||+.+++
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 9999997642 1111 234455565555432 3567799999999999
Q ss_pred HHHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 131 LVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
.+.+.++++. + +.|||++|||++.+..||++++|++|++++
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 9999998864 3 899999999999886799999999999976
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.7e-37 Score=242.62 Aligned_cols=162 Identities=30% Similarity=0.515 Sum_probs=133.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++ .++|+||++.+++ .|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~-~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALA-RLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhh-hEEEeCCCCCCcccCcH
Confidence 5699999999999999999999999999999999999999999999999988655433 233 4999999998865 599
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.+|+.+... ... .+.+.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 999976421 111 223445555554432 356779999999999999
Q ss_pred HHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 133 QAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
.+.++++. +|.|+|++||+++.+..||++++|++|++++.
T Consensus 172 ~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 172 VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred HHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 99998864 48999999999999867999999999999873
No 124
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=249.23 Aligned_cols=166 Identities=26% Similarity=0.441 Sum_probs=134.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC--CChhhhccCcEEEEccCC--CCcc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH--LDGTWLRGNVIGLINQEP--VLFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~--~l~~ 84 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++ .++|+||++ .+++
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~-~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE-SVGMVFQDPDNQLFS 97 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh-hEEEEecCcchhhcc
Confidence 469999999999999999999999999999999999999999999999998742 22234444 499999998 4566
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.|++||+.++.. ... .+++..+++.+++.. ++.|+|+++||+.++
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 799999987421 111 233456666655533 356779999999999
Q ss_pred HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+.+.++++++. + |.|||++||+++.+.. |||+++|++|++++ .++.
T Consensus 178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~-~g~~ 226 (283)
T PRK13636 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNP 226 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence 99999998864 3 8999999999999865 99999999999987 4443
No 125
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.8e-37 Score=238.80 Aligned_cols=161 Identities=37% Similarity=0.588 Sum_probs=134.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+++.|+.
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS-RISIIPQDPVLFSGTIR 95 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh-hEEEECCCCccccchHH
Confidence 46999999999999999999999999999999999999999999999999887666555554 49999999998888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.+... ...+++.++++.+++.. ++.|+|+++||+.+
T Consensus 96 enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~ 174 (221)
T cd03244 96 SNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174 (221)
T ss_pred HHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 99986532 23333343333332211 34577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
++.+.++++++.++.|+|++||+++.+..||++++|++|++++
T Consensus 175 ~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (221)
T cd03244 175 DALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE 217 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence 9999999998766799999999999987799999999999987
No 126
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-37 Score=243.93 Aligned_cols=163 Identities=29% Similarity=0.503 Sum_probs=135.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+ .|+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR-KIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc-ceEEEccCccccCCCcH
Confidence 46899999999999999999999999999999999999999999999999887655544544 4999999999887 599
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-------------------------------ccccCCCCCCCHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-------------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~LD~~~~~ 130 (181)
+||+.++.. ... .+.+.++++.+++.. ++.|+|+++||+.+++
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 999987521 111 234456666665542 2456799999999999
Q ss_pred HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.+.+.++++. + |+|||++||+++.+.. ||++++|++|++++.
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999998864 3 8999999999998865 999999999999873
No 127
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.3e-37 Score=253.90 Aligned_cols=163 Identities=26% Similarity=0.378 Sum_probs=134.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCC--CCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEP--VLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~--~l~ 83 (181)
..+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++... +++ .++||||++ .++
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~-~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS-DIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhC-ceEEEecCchhhcC
Confidence 46899999999999999999999999999999999999999999999999998776432 344 499999998 477
Q ss_pred c-ccHHHHhhcCCC----CCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCC
Q psy10472 84 A-TSVRENIRYGDS----SVS----DEQIEEAAKLANAHG------------------------------FISEFPSGAL 124 (181)
Q Consensus 84 ~-~tv~enl~~~~~----~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~L 124 (181)
+ .|+.+|+.++.. ... .+.+.++++.+++.. ++.|+||++|
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 6 599999875311 112 223455666665521 3567799999
Q ss_pred CHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 125 DNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+.++..++++|+++. + +.|+|+||||++.+.. ||+|++|.+|++++.
T Consensus 193 D~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999998864 3 8999999999999976 999999999999983
No 128
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=247.58 Aligned_cols=162 Identities=26% Similarity=0.432 Sum_probs=134.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+++. |+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-KVAYLPQQLPAAEGMTV 102 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh-heEEeccCCCCCCCccH
Confidence 46999999999999999999999999999999999999999999999999886655555554 49999999877765 99
Q ss_pred HHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 88 RENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 88 ~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.+|+.++... . ..+++..+++.+++.. ++.|+||++||+.+
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9999875210 1 1234556666655432 35577999999999
Q ss_pred HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++.+.++|.++. + +.|+|++||+++++.. ||++++|++|++++
T Consensus 183 ~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999998864 3 8999999999999865 99999999999986
No 129
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=243.47 Aligned_cols=162 Identities=28% Similarity=0.434 Sum_probs=133.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+++ .++|+||++.++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~ 94 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR-RVQMVFQIPNPI 94 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc-cEEEEeccCccC
Confidence 4689999999999999999999999999999999999974 6999999999987665555554 499999999876
Q ss_pred c-ccHHHHhhcCCC--C--CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 84 A-TSVRENIRYGDS--S--VS----DEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 84 ~-~tv~enl~~~~~--~--~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+ .|+.||+.++.. . .. .+.+.++++.+++.. ++.|+||
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 5 599999986421 1 11 223455666665421 3456799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++||+.+++.+.+.++++.++.|+|++||+++.+.. ||++++|++|++++
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 175 ANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 999999999999999987668999999999999865 99999999999987
No 130
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.6e-37 Score=232.45 Aligned_cols=160 Identities=31% Similarity=0.493 Sum_probs=130.7
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+++ .++|+||++.+|+.|++|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSS-LISVLNQRPYLFDTTLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHh-hEEEEccCCeeecccHHH
Confidence 699999999999999999999999999999999999999999999999987544 333444 499999999988889999
Q ss_pred HhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472 90 NIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 168 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~ 168 (181)
|+....+....+++.-+...+ ...-++.|+|+++||+.+++.+++.++++.++.|+|++||+++++..||++++|++|+
T Consensus 94 ~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 173 (178)
T cd03247 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK 173 (178)
T ss_pred hhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 982111111122222222222 2344678999999999999999999988766899999999999987799999999999
Q ss_pred EEe
Q psy10472 169 IVE 171 (181)
Q Consensus 169 i~~ 171 (181)
+++
T Consensus 174 i~~ 176 (178)
T cd03247 174 IIM 176 (178)
T ss_pred EEe
Confidence 976
No 131
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=245.44 Aligned_cols=162 Identities=25% Similarity=0.450 Sum_probs=134.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+++. |+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR-RLALLPQHHLTPEGITV 93 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhh-heEEecccCCCCCCccH
Confidence 46999999999999999999999999999999999999999999999999886655544444 49999999988865 99
Q ss_pred HHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 88 RENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 88 ~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.||+.++... . ..+.+.++++.+++.. ++.|+|+++||+.+
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9999875210 0 1223455566555432 35677999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus 174 ~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 174 QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218 (255)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence 999999998864 58999999999999865 99999999999986
No 132
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.7e-37 Score=235.34 Aligned_cols=161 Identities=33% Similarity=0.575 Sum_probs=133.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+.|++
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS-SLTIIPQDPTLFSGTIR 99 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh-hEEEEecCCcccCccHH
Confidence 36999999999999999999999999999999999999999999999999886655555554 49999999998888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHH----------------------hccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKL----------------------ANAHGFISEFPSGALDNESEKLVQAALESACKGRTVL 146 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii 146 (181)
+|+.+... ...+++.++++. ....-++.|+|+++||+.++..+.++|+++.+++|+|
T Consensus 100 ~~l~~~~~-~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii 178 (207)
T cd03369 100 SNLDPFDE-YSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTIL 178 (207)
T ss_pred HHhcccCC-CCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99976532 223333333321 0112246788999999999999999999876689999
Q ss_pred EEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 147 MIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 147 ~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
++||+++.+..||++++|++|++++
T Consensus 179 i~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 179 TIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred EEeCCHHHHhhCCEEEEEECCEEEe
Confidence 9999999986699999999999987
No 133
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=247.35 Aligned_cols=166 Identities=27% Similarity=0.479 Sum_probs=135.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~t 86 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. +++.|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK-FVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh-heEEEecCccccccccc
Confidence 35999999999999999999999999999999999999999999999999886554444444 4999999974 55679
Q ss_pred HHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
+.+|+.++.. .... +.+.++++.+++.. ++.|+||++||+.+++.
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9999986421 1121 23455666655433 35677999999999999
Q ss_pred HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+.++++++. + |.|||++||+++++.. |||+++|++|++++ .++.
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~-~g~~ 222 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA-YGTV 222 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE-ECCH
Confidence 999998864 3 8999999999999854 99999999999987 3443
No 134
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-37 Score=241.05 Aligned_cols=160 Identities=28% Similarity=0.444 Sum_probs=130.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCCCCcc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPVLFA-T 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~l~~-~ 85 (181)
+++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++... ....+++ .++|+||++.+|+ .
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~ 91 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ-KVGMVFQQFNLFPHL 91 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHh-cceEEecccccCCCC
Confidence 5699999999999999999999999999999999999999999999999987531 2233444 4999999999887 5
Q ss_pred cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 SVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.||+.++. .... .+++.++++.+++.. ++.|+|+++||+.++
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 9999998752 1111 123445555554432 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i 169 (181)
+.+.++++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 172 ~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 172 GEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999875 48999999999999865 999999999974
No 135
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-37 Score=239.27 Aligned_cols=158 Identities=31% Similarity=0.459 Sum_probs=130.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .+ +.++|+||++.+|+ .|+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~-~~i~~v~q~~~~~~~~tv 90 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PG-PDRGYVFQQDALLPWLTV 90 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----cc-CcEEEEecccccccCCCH
Confidence 469999999999999999999999999999999999999999999999998753 22 34999999999887 599
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.++.. ... .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 91 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~ 170 (220)
T cd03293 91 LDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH
Confidence 999986421 111 233455565555432 356779999999999999
Q ss_pred HHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEe--CCeEEee
Q psy10472 133 QAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~--~G~i~~~ 172 (181)
+++++++ . .++|||++||+++.+.. ||++++|+ +|++++.
T Consensus 171 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 171 QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 9999876 3 38999999999998865 99999999 7999873
No 136
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-37 Score=239.69 Aligned_cols=158 Identities=23% Similarity=0.400 Sum_probs=130.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++ .++|+||++.+++. |+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~-~i~~~~q~~~~~~~~tv 87 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARN-RIGYLPEERGLYPKMKV 87 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHc-cEEEeccCCcCCcCCcH
Confidence 469999999999999999999999999999999999999999999999987642 2333 49999999998875 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.+... ... .+.+.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~ 167 (210)
T cd03269 88 IDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL 167 (210)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999976421 111 233445555554432 356789999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 168 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 168 KDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99998864 58999999999999865 99999999999876
No 137
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=244.43 Aligned_cols=163 Identities=26% Similarity=0.437 Sum_probs=132.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... ....+++ .++|+||++.
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 97 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRR-RVGMVFQKPN 97 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhh-cEEEEecCCC
Confidence 469999999999999999999999999999999999974 6899999999988542 2233444 4999999998
Q ss_pred CccccHHHHhhcCCC---CCC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|+.||+.++.. ... .+++.++++.+++.. ++.|+||
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 888899999987421 111 233445555554411 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++|+++.+++|||++|||++.+.. ||++++|++|++++.
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 178 SALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999987668999999999999865 999999999999873
No 138
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.4e-37 Score=244.17 Aligned_cols=163 Identities=23% Similarity=0.385 Sum_probs=135.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|++|++.++. .|+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR-RVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh-heEEecccCccCCCCCH
Confidence 46999999999999999999999999999999999999999999999999987766555454 4999999986654 599
Q ss_pred HHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 88 RENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 88 ~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.||+.++... . ..+++.++++.+++.. ++.|+|+++||+.+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 9999875210 1 1223455666555432 35577999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+..+.++|+++. ++.|||++||+++.+.. ||++++|++|++++.
T Consensus 173 ~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 173 QLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 999999998875 48999999999999955 999999999999873
No 139
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=244.35 Aligned_cols=158 Identities=31% Similarity=0.408 Sum_probs=132.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++ .++|+||++.+|+ .|+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~-~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARE-DTRLMFQDARLLPWKKV 98 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhC-ceEEEecCccCCCCCcH
Confidence 46999999999999999999999999999999999999999999999998653 2333 4999999999887 499
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHH
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALES 138 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~ 138 (181)
+||+.++......+++.++++.+++.. ++.|+||++||+.++..+.++|++
T Consensus 99 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 99 IDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred HHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999987632222344566666665533 356779999999999999999987
Q ss_pred h-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 139 A-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 139 ~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+ + .++|+|++|||++.+.. ||++++|++|++++.
T Consensus 179 ~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 179 LWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 6 3 38999999999999865 999999999999873
No 140
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=245.83 Aligned_cols=166 Identities=25% Similarity=0.387 Sum_probs=136.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+ .|+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR-RIGLLAQNATTPGDITV 98 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh-heEEeeccCcCCCCCcH
Confidence 46999999999999999999999999999999999999999999999999887655555444 4999999998886 499
Q ss_pred HHHhhcCCCC-------CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 88 RENIRYGDSS-------VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 88 ~enl~~~~~~-------~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
+||+.++... .. .+.+.++++.+++.. ++.|+||++||+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 9999875210 11 223455666655432 35577999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+.+.|.++. .+.|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus 179 ~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 228 (265)
T PRK10253 179 QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAP 228 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence 999999998864 38999999999998855 99999999999987 3443
No 141
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-37 Score=244.61 Aligned_cols=163 Identities=25% Similarity=0.444 Sum_probs=132.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECC--CCChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLK--HLDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~--~~~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+...+++ .++|+||++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~ 95 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRR-EVGMVFQYPN 95 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhh-ceeEEecCCc
Confidence 5699999999999999999999999999999999999987 4999999999886 233334444 4999999999
Q ss_pred Cccc-cHHHHhhcCCC--C--CC----HHHHHHHHHHhcccc---------------------------------ccccC
Q psy10472 82 LFAT-SVRENIRYGDS--S--VS----DEQIEEAAKLANAHG---------------------------------FISEF 119 (181)
Q Consensus 82 l~~~-tv~enl~~~~~--~--~~----~~~~~~~~~~~~~~~---------------------------------~~~~~ 119 (181)
+|+. |+.||+.++.. . .. .+.+.++++.+++.. ++.|+
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9875 99999986421 1 01 123455555554311 35577
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 176 P~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999987667999999999999865 999999999999873
No 142
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=233.75 Aligned_cols=161 Identities=25% Similarity=0.454 Sum_probs=134.5
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
++++||||+++.||+++|+|||||||||+||+|++++.|++|.|+++|.+....+ ...|++ ||.+|.+..++.. |++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~-IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRK-IGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhh-cceecCCcChhhhhhHH
Confidence 4899999999999999999999999999999999999999999999999987654 445554 9999977788865 999
Q ss_pred HHhhcCCC------CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 89 ENIRYGDS------SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 89 enl~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
|||.|... ...+.++++..+.+++.+ ++.|+|+++||..+++.+.
T Consensus 94 Enl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~ 173 (245)
T COG4555 94 ENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173 (245)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHH
Confidence 99998521 111334444444444332 4567899999999999999
Q ss_pred HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+.+++ +|++||++||.+++++. ||+|+++++|+++..
T Consensus 174 dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 9999876 49999999999999985 999999999999884
No 143
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.1e-37 Score=292.14 Aligned_cols=168 Identities=34% Similarity=0.520 Sum_probs=151.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+++...+|++ |++|||+|.+|++|++
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~-i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK-ITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc-CeEECCCCcccCccHH
Confidence 469999999999999999999999999999999999999999999999999999999888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
+||.... ..++++++++++.+++.+ ++.|+||++||.++
T Consensus 1378 ~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1378 MNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred HHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 9998432 466788888888776543 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+++| .++++++
T Consensus 1457 e~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE-~G~~~eL 1506 (1522)
T TIGR00957 1457 DNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE-FGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999998778999999999999999999999999999999 5666544
No 144
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.8e-37 Score=240.09 Aligned_cols=154 Identities=25% Similarity=0.419 Sum_probs=126.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC---ccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL---FAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l---~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++ .++|+||++.+ ++.
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~-~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERK-RIGYVPQRRSIDRDFPI 85 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHh-heEEeccccccccCCCC
Confidence 46999999999999999999999999999999999999999999999998753 2343 49999999876 346
Q ss_pred cHHHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472 86 SVRENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 86 tv~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~ 126 (181)
|+.||+.++... . ..++++++++.+++.. ++.|+||++||+
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 165 (213)
T cd03235 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165 (213)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999999875321 1 1234556666655432 355779999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 168 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~ 168 (181)
.+++.+.+.++++. ++.|+|++|||++++.. ||++++|++|.
T Consensus 166 ~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 166 KTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 99999999998865 68999999999999865 99999998863
No 145
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=253.55 Aligned_cols=161 Identities=27% Similarity=0.415 Sum_probs=133.9
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCCCCccc-cHH
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++.... ....++ .++|+||++.+|+. |++
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR-RIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC-CEEEEcCCcccCCCCcHH
Confidence 899999999999999999999999999999999999999999999875421 122333 49999999999975 999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHh
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESA 139 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~ 139 (181)
||+.++......+++.++++.+++.. ++.|+|+++||+.+++.+.+.|+++
T Consensus 95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL 174 (352)
T ss_pred HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99998744333455666777666543 3557799999999999999999886
Q ss_pred c-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 140 C-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 140 ~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
. + +.|+|+||||++++.. ||++++|++|++++ .+++
T Consensus 175 ~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~ 213 (352)
T PRK11144 175 AREINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPL 213 (352)
T ss_pred HHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCH
Confidence 4 3 7999999999998865 99999999999987 3443
No 146
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-37 Score=236.37 Aligned_cols=155 Identities=31% Similarity=0.443 Sum_probs=130.0
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR 92 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~ 92 (181)
++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. + +.++|+||++.+|+. |++||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--D-RPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHh--H-ccEEEEecccccCCCCcHHHHHh
Confidence 99999999999999999999999999999999999999999999998655432 3 349999999998875 9999998
Q ss_pred cCCCC------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472 93 YGDSS------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 93 ~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
++... ...+++.++++.+++.. ++.|+|+++||+.+++.+.++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 172 (211)
T cd03298 93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172 (211)
T ss_pred cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 75321 11234556666655432 35577999999999999999998
Q ss_pred Hhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++. .++|+|++||+++.+.. ||++++|++|++++
T Consensus 173 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 864 38999999999999865 99999999999876
No 147
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.9e-37 Score=243.94 Aligned_cols=163 Identities=28% Similarity=0.446 Sum_probs=133.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-------------hhhhccCcEEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-------------GTWLRGNVIGL 75 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-------------~~~~r~~~i~~ 75 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++ ...+++ .++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRN-KIGM 91 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhh-CeEE
Confidence 56999999999999999999999999999999999999999999999999886542 122343 4999
Q ss_pred EccCCCCcc-ccHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------cccc
Q psy10472 76 INQEPVLFA-TSVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISE 118 (181)
Q Consensus 76 v~q~~~l~~-~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~ 118 (181)
+||++.+|+ .|+.||+.++. .... .+.+.++++.+++.. ++.|
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999998886 59999998741 1111 223455565555432 3567
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 119 FPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 119 ~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+|+++||+.++..+.++|+++. + +.|+|++||+++.+.. ||++++|++|++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 7999999999999999998864 3 8999999999999855 999999999999873
No 148
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-37 Score=291.15 Aligned_cols=170 Identities=36% Similarity=0.634 Sum_probs=151.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----------------------------------------
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV---------------------------------------- 48 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p---------------------------------------- 48 (181)
+++|+|+||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 4699999999999999999999999999999999999998
Q ss_pred --------------CcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCCCCHHHHHHHHHHhcccc
Q psy10472 49 --------------SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG 114 (181)
Q Consensus 49 --------------~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 114 (181)
++|+|.+||.++.+++...+|++ ||||+|+|.||++|++|||.++.+..++++++++++.+++.+
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~-i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL-FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh-ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 69999999999999998888876 999999999999999999999976677888888888776554
Q ss_pred c----------------------------------------cccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCc
Q psy10472 115 F----------------------------------------ISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRL 152 (181)
Q Consensus 115 ~----------------------------------------~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~ 152 (181)
+ +.|+||++||+++++.+.+.|.... +++|+|+|||++
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 3 4466999999999999999998873 589999999999
Q ss_pred hhhhcCCeEEEEeC----CeEEeecCCchhh
Q psy10472 153 STVQNADLIVVLQA----GQIVEMLGQHENT 179 (181)
Q Consensus 153 ~~~~~~d~v~~l~~----G~i~~~~~~~~~~ 179 (181)
+.++.||+|++|++ |+++...++++++
T Consensus 1420 sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1420 ASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred HHHHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 99999999999999 8965326777654
No 149
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.5e-37 Score=290.93 Aligned_cols=168 Identities=31% Similarity=0.485 Sum_probs=149.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||||+|.+|++||+
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~-I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ-FSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc-ceEECCCCccccccHH
Confidence 359999999999999999999999999999999999999999999999999999998888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~P~~~LD~~ 127 (181)
+||..+. ..++++++++++.+++.+ ++.|+||++||++
T Consensus 1402 eNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1402 QNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480 (1560)
T ss_pred HHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHH
Confidence 9998753 456777888887665433 2445699999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++++ .++++++
T Consensus 1481 te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE-~Gt~~eL 1531 (1560)
T PTZ00243 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAE-MGSPREL 1531 (1560)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 99999999998777899999999999999999999999999999 5665544
No 150
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-37 Score=244.11 Aligned_cols=157 Identities=29% Similarity=0.455 Sum_probs=127.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~ 81 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+...+++ .++|+||++.
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 104 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRR-RIGMVFQQPN 104 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhh-ceEEEccCCc
Confidence 468999999999999999999999999999999999987 689999999998753 23344454 4999999999
Q ss_pred CccccHHHHhhcCCCC--CC---HHHHHHHHHHhccc---------------------------------cccccCCCCC
Q psy10472 82 LFATSVRENIRYGDSS--VS---DEQIEEAAKLANAH---------------------------------GFISEFPSGA 123 (181)
Q Consensus 82 l~~~tv~enl~~~~~~--~~---~~~~~~~~~~~~~~---------------------------------~~~~~~P~~~ 123 (181)
+|+.|++||+.++... .. .+.+.++++.+++. -++.|+|+++
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 8878999999875321 11 22334445544331 0356779999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
||+.+++.+.++|++++++.|||++||+++.+.. ||++++|++
T Consensus 185 LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 185 LDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 9999999999999987667999999999999865 999999996
No 151
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-37 Score=242.89 Aligned_cols=163 Identities=29% Similarity=0.481 Sum_probs=133.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+...+++ .++|+||++.
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 104 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRA-KVGMVFQKPT 104 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhc-ceEEEecCCc
Confidence 468999999999999999999999999999999999986 589999999998753 22334454 4999999998
Q ss_pred CccccHHHHhhcCCC---CCC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAH----G-----------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~ 121 (181)
+|+.|+++|+.++.. ... .++++++++.+++. . ++.|+|+
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 184 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 888899999987521 111 13345566665531 1 3567799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 185 ~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 185 SALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999987667899999999999865 999999999999873
No 152
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-37 Score=229.33 Aligned_cols=155 Identities=48% Similarity=0.707 Sum_probs=129.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|+.|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~~~~~~~~~t~~e 94 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK-NIAYVPQDPFLFSGTIRE 94 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh-hEEEEcCCchhccchHHH
Confidence 6899999999999999999999999999999999999999999999999887665555554 499999999888889999
Q ss_pred HhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472 90 NIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 168 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~ 168 (181)
|+ + +....+++.-+...+ ...-++.|+|+++||+.++..+.++++++.+++|+|++||+++.+..||++++|++|+
T Consensus 95 ~l-L--S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 95 NI-L--SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred Hh-h--CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 98 2 111223332222222 3345678999999999999999999988766799999999999986699999999984
No 153
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-37 Score=246.70 Aligned_cols=166 Identities=28% Similarity=0.471 Sum_probs=135.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-hhhccCcEEEEccCCC--Cccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TWLRGNVIGLINQEPV--LFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~--l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++ .++|+||++. ++..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~-~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN-KAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhh-heEEEecChhhhhccc
Confidence 469999999999999999999999999999999999999999999999998865332 33444 4999999984 5556
Q ss_pred cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
|+.+|+.|+... .. .++++++++.+++.. ++.|+|+++||+.++.
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 899999886321 11 234556666665543 3557799999999999
Q ss_pred HHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 131 LVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 131 ~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.+.++++. .|.|||++||+++.+..||++++|++|+++.. ++.
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~-g~~ 228 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME-GTP 228 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe-cCH
Confidence 9999999864 38999999999999867999999999999873 443
No 154
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.3e-37 Score=242.32 Aligned_cols=163 Identities=27% Similarity=0.433 Sum_probs=132.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--------hhhhccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--------GTWLRGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--------~~~~r~~~i~~v~q~~ 80 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++ .++|+||++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~-~i~~v~q~~ 94 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQ-HVGFVFQNF 94 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhh-hEEEEecCc
Confidence 46999999999999999999999999999999999999999999999999875432 123343 499999999
Q ss_pred CCcc-ccHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCC
Q psy10472 81 VLFA-TSVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGA 123 (181)
Q Consensus 81 ~l~~-~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~ 123 (181)
.+|+ .|+.||+.++. .... .+.+.++++.+++.. ++.|+||++
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8887 59999997641 1111 123445555555432 356779999
Q ss_pred CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
||+.+++.+.++++++. ++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999998865 48999999999999865 999999999999873
No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-37 Score=245.93 Aligned_cols=163 Identities=28% Similarity=0.450 Sum_probs=132.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCC--CC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEP--VL 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~--~l 82 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++ .|+|+||++ .+
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~i~~~~q~~~~~~ 98 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK-KVGLVFQFPESQL 98 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHh-heEEEeeChhhhh
Confidence 36999999999999999999999999999999999999999999999999886532 233444 499999997 56
Q ss_pred ccccHHHHhhcCCC--CCCH----HHHHHHHHHhcccc------------------------------ccccCCCCCCCH
Q psy10472 83 FATSVRENIRYGDS--SVSD----EQIEEAAKLANAHG------------------------------FISEFPSGALDN 126 (181)
Q Consensus 83 ~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~ 126 (181)
|+.|++||+.++.. .... +.+.++++.+++.. ++.|+||++||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 67799999986421 1111 22345555555531 355779999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.+++.+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.
T Consensus 179 ~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999998864 48999999999999865 999999999999873
No 156
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-37 Score=245.67 Aligned_cols=166 Identities=24% Similarity=0.409 Sum_probs=135.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCCChhhhccCcEEEEccCCC--Cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDGTWLRGNVIGLINQEPV--LF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~ 83 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...+....++ .+||+||++. ++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~-~ig~v~q~~~~~~~ 98 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE-KVGIVFQNPDNQFV 98 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh-heEEEEECHHHhhc
Confidence 459999999999999999999999999999999999999998 89999999987655444444 4999999984 34
Q ss_pred cccHHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 84 ATSVRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 84 ~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
+.|+.||+.++.. .... +++.++++.+++.. ++.|+|+++||+.+
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~ 178 (282)
T PRK13640 99 GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178 (282)
T ss_pred cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 5699999987521 1222 23455666665543 35567999999999
Q ss_pred HHHHHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+.+.|+++. + |+|||++||+++.+..||++++|++|++++. ++.
T Consensus 179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~-g~~ 227 (282)
T PRK13640 179 KEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ-GSP 227 (282)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 999999998864 3 8999999999999867999999999999873 443
No 157
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=242.20 Aligned_cols=166 Identities=27% Similarity=0.397 Sum_probs=133.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +...+++ .++|+||++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 98 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRR-KIGMVFQTPN 98 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhh-ceEEEeeccc
Confidence 4699999999999999999999999999999999999997 489999999987532 2223444 4999999998
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|++||+.++.. . .. .+.+.++++.+++. -++.|+|+
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 887899999987531 1 11 22344455544431 03567799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++||+.++..++++|++++++.|+|++||+++++.. ||++++|++|++++ .++.
T Consensus 179 ~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 233 (254)
T PRK14273 179 SALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESST 233 (254)
T ss_pred cccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence 999999999999999988668999999999999865 99999999999987 3443
No 158
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=243.10 Aligned_cols=163 Identities=25% Similarity=0.383 Sum_probs=133.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-------------hhhhccCcEEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-------------GTWLRGNVIGL 75 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-------------~~~~r~~~i~~ 75 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++ .++|
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 96 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRT-RLTM 96 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhh-ceEE
Confidence 56999999999999999999999999999999999999999999999999875311 123343 4999
Q ss_pred EccCCCCccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc------------------------------ccc
Q psy10472 76 INQEPVLFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG------------------------------FIS 117 (181)
Q Consensus 76 v~q~~~l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~------------------------------~~~ 117 (181)
+||++.+++. |++||+.++. .... .+++.++++.+++.. ++.
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999875 9999997631 1111 233455666655432 345
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 118 EFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 118 ~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+||++||+.+++.+.++|+++. +|+|||+||||++.+.. |||+++|++|++++.
T Consensus 177 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 67999999999999999998875 48999999999999976 999999999999873
No 159
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.8e-37 Score=238.94 Aligned_cols=160 Identities=23% Similarity=0.376 Sum_probs=132.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ-QVSYCAQTPTLFGDTVY 98 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh-ccEEEecccccccccHH
Confidence 56999999999999999999999999999999999999999999999999887666554454 49999999998888999
Q ss_pred HHhhcCC----CCCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472 89 ENIRYGD----SSVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQA 134 (181)
Q Consensus 89 enl~~~~----~~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~ 134 (181)
||+.+.. .....+++.++++.+++.. ++.|+||++||+.+++.+.+
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 9997641 1112334556676666531 35577999999999999999
Q ss_pred HHHHhc--CCcEEEEEecCchhhhcCCeEEEEe--CCeE
Q psy10472 135 ALESAC--KGRTVLMIAHRLSTVQNADLIVVLQ--AGQI 169 (181)
Q Consensus 135 ~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~--~G~i 169 (181)
+++++. .+.|+|++||+++.+..||++++|+ .|++
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM 217 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence 998864 3899999999999987799999995 4444
No 160
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-37 Score=244.70 Aligned_cols=162 Identities=27% Similarity=0.470 Sum_probs=133.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc-ccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF-ATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~-~~t 86 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. .| ..|
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK-KIGIIFQNPDNQFIGAT 100 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc-ceEEEEeCHHHhcCccc
Confidence 46999999999999999999999999999999999999999999999999987655445555 4999999984 44 469
Q ss_pred HHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
++||+.++.. .... +.+.++++.+++.. ++.|+|+++||+.+++.
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9999987521 1121 22445555555432 35577999999999999
Q ss_pred HHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 132 VQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 132 i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
++++++++. + ++|+|++||+++.+..||++++|++|++.+
T Consensus 181 l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 181 IKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIA 222 (271)
T ss_pred HHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEE
Confidence 999998864 3 589999999999886799999999999986
No 161
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-37 Score=230.14 Aligned_cols=159 Identities=38% Similarity=0.542 Sum_probs=130.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--hhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++ .++|++|++.+|+.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~ 91 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRR-RIGMVFQDFALFPHL 91 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhh-cEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999999999999999887654 333444 59999999988865
Q ss_pred cHHHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeE
Q psy10472 86 SVRENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLI 161 (181)
Q Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v 161 (181)
|++||+.+..+....+++.-+...+ ...-++.|+|+++||+.++..+.++++++. + +.|+|++||+++.+.. ||++
T Consensus 92 t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 171 (178)
T cd03229 92 TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRV 171 (178)
T ss_pred CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 9999997642222233333233332 234467899999999999999999998864 4 7999999999999975 9999
Q ss_pred EEEeCCe
Q psy10472 162 VVLQAGQ 168 (181)
Q Consensus 162 ~~l~~G~ 168 (181)
++|++|+
T Consensus 172 ~~l~~g~ 178 (178)
T cd03229 172 VVLRDGK 178 (178)
T ss_pred EEEeCCC
Confidence 9999884
No 162
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-37 Score=244.36 Aligned_cols=162 Identities=28% Similarity=0.420 Sum_probs=133.6
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Ccc-ccH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFA-TSV 87 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~-~tv 87 (181)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. +|+ .|+
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK-HIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh-heeEEEeChHHhcccccH
Confidence 4899999999999999999999999999999999999999999999999987655555555 4999999985 454 589
Q ss_pred HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.+|+.++... .. .+++.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999875211 11 123455666655432 355779999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
.+.++++. + |+|+|++||+++.+..||++++|++|++++.
T Consensus 182 ~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 182 LDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred HHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 99998864 3 8999999999998867999999999999873
No 163
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.4e-37 Score=240.79 Aligned_cols=167 Identities=28% Similarity=0.323 Sum_probs=133.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++...+.....+..++|+||++.+++.
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 46999999999999999999999999999999999995 799999999999987665444333348999999998876
Q ss_pred cHHHHhhcCCCC---------CC----HHHHHHHHHHhccc-c------------------------------ccccCCC
Q psy10472 86 SVRENIRYGDSS---------VS----DEQIEEAAKLANAH-G------------------------------FISEFPS 121 (181)
Q Consensus 86 tv~enl~~~~~~---------~~----~~~~~~~~~~~~~~-~------------------------------~~~~~P~ 121 (181)
|+.+|+.+.... .. .+++.++++.+++. . ++.|+||
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 172 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999998753110 01 12344555555442 1 2456799
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~ 176 (181)
++||+.+++.+.++|+++. +|.|||++|||++.+.. ||++++|++|++++ .++.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~ 229 (243)
T TIGR01978 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDV 229 (243)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCH
Confidence 9999999999999998875 58999999999999864 79999999999987 3443
No 164
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=242.68 Aligned_cols=163 Identities=28% Similarity=0.475 Sum_probs=132.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+ ...+++ .++|+||++.
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 103 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRK-NVGMVFQKPN 103 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhh-hEEEEecCCc
Confidence 4689999999999999999999999999999999999985 7999999999875432 223343 5999999998
Q ss_pred CccccHHHHhhcCCC--CCCH----HHHHHHHHHhccc----c-----------------------------ccccCCCC
Q psy10472 82 LFATSVRENIRYGDS--SVSD----EQIEEAAKLANAH----G-----------------------------FISEFPSG 122 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~----~-----------------------------~~~~~P~~ 122 (181)
+|+.|++||+.++.. .... +.+.++++.+++. . ++.|+||+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 888899999987521 1111 2345566655441 1 35577999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+||+.++..+.++++++.+++|||++|||++.+.. ||++++|++|++++.
T Consensus 184 ~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 184 ALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred ccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999887668999999999999865 999999999999873
No 165
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=241.97 Aligned_cols=162 Identities=27% Similarity=0.404 Sum_probs=132.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv 87 (181)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.++ ..|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR-RRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhh-heEEEccCCcCCCCCCH
Confidence 56999999999999999999999999999999999999999999999999887655544444 499999999875 4599
Q ss_pred HHHhhcCCCC--C----CHHHHHHHHHHhcc-----------------------------------ccccccCCCCCCCH
Q psy10472 88 RENIRYGDSS--V----SDEQIEEAAKLANA-----------------------------------HGFISEFPSGALDN 126 (181)
Q Consensus 88 ~enl~~~~~~--~----~~~~~~~~~~~~~~-----------------------------------~~~~~~~P~~~LD~ 126 (181)
+||+.++... . ..+.+.++++.+++ .-++.|+||++||+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 9999875321 1 11223444433221 23456789999999
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+++.+.++|+++. ++.|||++|||++.+.. ||++++|++|++++
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999998864 48999999999999865 99999999999987
No 166
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-37 Score=250.01 Aligned_cols=168 Identities=27% Similarity=0.446 Sum_probs=136.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.|+|+++... ....+++ .++|+||+++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~-~i~~v~q~~~ 173 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRT-RIGMVFQKPT 173 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhc-cEEEEecCCc
Confidence 459999999999999999999999999999999999986 5799999999998632 2234454 4999999999
Q ss_pred CccccHHHHhhcCCC--CCC-HH----HHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS--SVS-DE----QIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~~~-~~----~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|++||+.|+.. ... .+ .+..+++.+++.. ++.|+|+
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt 253 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 999999999997532 111 11 1344455544321 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++||+.+...+.+.|+.+.+++|+|+|||+++.+.. ||||++|++|++++ .+.+++
T Consensus 254 s~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~~ 310 (329)
T PRK14257 254 SALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETKT 310 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999887778999999999999876 99999999999998 454443
No 167
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1e-36 Score=230.83 Aligned_cols=159 Identities=24% Similarity=0.342 Sum_probs=128.4
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc-cc
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA-TS 86 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~-~t 86 (181)
+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++ .+++ .|
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 94 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence 8999999999999999999999999999999999999999999999999876653332233599999995 3555 59
Q ss_pred HHHHhhcCCC--CCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeE
Q psy10472 87 VRENIRYGDS--SVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLI 161 (181)
Q Consensus 87 v~enl~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v 161 (181)
++||+.++.. ....+++.-+...+ +..-++.|+|+++||+.+++.+.+.++++. ++.|+|++||+++.+.. ||++
T Consensus 95 ~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v 174 (182)
T cd03215 95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRI 174 (182)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999987531 11123332222222 234467899999999999999999998864 48999999999998866 9999
Q ss_pred EEEeCCeE
Q psy10472 162 VVLQAGQI 169 (181)
Q Consensus 162 ~~l~~G~i 169 (181)
++|++|++
T Consensus 175 ~~l~~G~i 182 (182)
T cd03215 175 LVMYEGRI 182 (182)
T ss_pred EEecCCcC
Confidence 99999974
No 168
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=244.24 Aligned_cols=162 Identities=27% Similarity=0.442 Sum_probs=133.4
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--CccccH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATSV 87 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~tv 87 (181)
++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. ++..|+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR-KIGMVFQNPDNQFVGATV 99 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc-ceEEEEECHHHhhccCCH
Confidence 4899999999999999999999999999999999999999999999999987655444554 4999999984 445699
Q ss_pred HHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.||+.++.. .... +++.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987521 1122 23455555554432 355779999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
.++++++. + |.|+|++||+++.+..||++++|++|++++.
T Consensus 180 ~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 99998874 3 8999999999999877999999999999873
No 169
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-37 Score=243.70 Aligned_cols=163 Identities=30% Similarity=0.490 Sum_probs=133.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +...+++ .++|+||++.
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 110 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA-RVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhh-ceEEEecCCC
Confidence 4689999999999999999999999999999999999975 899999999988542 2333444 4999999999
Q ss_pred CccccHHHHhhcCCC--CC--C----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472 82 LFATSVRENIRYGDS--SV--S----DEQIEEAAKLANAHG---------------------------------FISEFP 120 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~~--~----~~~~~~~~~~~~~~~---------------------------------~~~~~P 120 (181)
+|+.|+.||+.++.. .. . .+++.++++.+++.. ++.|+|
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 887899999987421 10 1 223455666655521 345679
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++||+.+++.+.++|+++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus 191 t~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 191 CSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred CcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999987667899999999999865 999999999999873
No 170
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=228.68 Aligned_cols=157 Identities=28% Similarity=0.497 Sum_probs=129.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++ .++|+||++.+|+. |+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKR-RIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-Hhhhc-cEEEEecCCccccCCcH
Confidence 46899999999999999999999999999999999999999999999999886544 33444 49999999988875 99
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL 164 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l 164 (181)
.||+.+. ....+++.-+...+ +..-++.|+|+++||+.+++.+.++++++. +|.|+|++|||++++.. ||++++|
T Consensus 91 ~~~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l 168 (173)
T cd03230 91 RENLKLS--GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168 (173)
T ss_pred HHHhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 9998732 11223332222222 334567899999999999999999999864 57999999999999875 9999999
Q ss_pred eCCeE
Q psy10472 165 QAGQI 169 (181)
Q Consensus 165 ~~G~i 169 (181)
++|++
T Consensus 169 ~~g~i 173 (173)
T cd03230 169 NNGRI 173 (173)
T ss_pred eCCCC
Confidence 99964
No 171
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=244.90 Aligned_cols=163 Identities=25% Similarity=0.413 Sum_probs=130.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC--CChhhhccCcEEEEccCCC--Ccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV--LFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~--l~~ 84 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++ .++|+||++. ++.
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ-QVATVFQDPEQQIFY 92 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh-heEEEeeChhhcccc
Confidence 569999999999999999999999999999999999999999999999998742 12223443 4999999985 344
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.|+.+|+.++.. ... .+.+.++++.+++.. ++.|+||++||+.++
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 589999976411 111 123345555555432 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
..+.++|+++. +|.|||++|||++.+.. ||++++|++|++++.
T Consensus 173 ~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999998864 58999999999999865 999999999999873
No 172
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-37 Score=245.06 Aligned_cols=166 Identities=28% Similarity=0.471 Sum_probs=134.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCC--CCcc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP--VLFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~--~l~~ 84 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...+++ .|+|+||++ .+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK-TVGIVFQNPDDQLFA 93 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh-heEEEeeChhhhhcc
Confidence 4599999999999999999999999999999999999999999999999988522 1223444 499999997 3566
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.|+.||+.++.. ... .+++.++++.+++.+ ++.|+||++||+.++
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 799999987421 111 133455666665533 355779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
..+.+++.++. ++.|||++|||++.+.. ||++++|++|++++ .++.
T Consensus 174 ~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 221 (275)
T PRK13639 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTP 221 (275)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence 99999998875 48999999999999865 99999999999987 3443
No 173
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-36 Score=239.59 Aligned_cols=165 Identities=35% Similarity=0.536 Sum_probs=134.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|++
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~-~i~~v~q~~~l~~~tv~ 112 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS-RLSIILQDPILFSGSIR 112 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh-hEEEECCCCcccccHHH
Confidence 46999999999999999999999999999999999999999999999999987766555554 49999999998888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
+|+.+... .....+..+++.+++ .-++.|+|+++||+.+
T Consensus 113 ~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 191 (257)
T cd03288 113 FNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191 (257)
T ss_pred HhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 99875422 122222222221111 1135577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+.++++.+.++.|+|++||+++.+..||++++|++|++++ .++.
T Consensus 192 ~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~-~g~~ 238 (257)
T cd03288 192 ENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE-CDTP 238 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEE-eCCH
Confidence 9999999988767899999999999987799999999999987 3443
No 174
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-36 Score=261.78 Aligned_cols=166 Identities=27% Similarity=0.428 Sum_probs=138.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|+++...+....+++.++|+||++.+++. |+
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 46899999999999999999999999999999999999999999999999987665544444459999999988875 99
Q ss_pred HHHhhcCCCCC--CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 88 RENIRYGDSSV--SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 88 ~enl~~~~~~~--~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
+||+.++.... ..+++.++++.+++.. ++.|+||++||+.+++.+.++|
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 99998864221 1234555666655532 3567799999999999999999
Q ss_pred HHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 137 ESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 137 ~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
+++. +|+|||++|||++.+.. ||++++|++|++++ .++
T Consensus 184 ~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~ 223 (510)
T PRK15439 184 RELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGK 223 (510)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecC
Confidence 8864 58999999999999865 99999999999987 343
No 175
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=239.41 Aligned_cols=163 Identities=24% Similarity=0.380 Sum_probs=131.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC---C---ChhhhccCcEEEEccCCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH---L---DGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~---~---~~~~~r~~~i~~v~q~~~l 82 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ....+++ .++|+||++.+
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~-~i~~~~q~~~~ 93 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR-NVGMVFQQYNL 93 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh-heEEEecCccc
Confidence 469999999999999999999999999999999999999999999999998631 1 1123344 49999999998
Q ss_pred ccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCC
Q psy10472 83 FAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALD 125 (181)
Q Consensus 83 ~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD 125 (181)
|+. |+.||+.+.. .... .+++.++++.+++.. ++.|+|+++||
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 875 9999997421 1111 223444555554432 35677999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+++.+.++++++. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus 174 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 174 PEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999998875 48999999999999865 999999999999873
No 176
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.5e-36 Score=235.58 Aligned_cols=161 Identities=30% Similarity=0.407 Sum_probs=129.8
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCC--CCcc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEP--VLFA 84 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~--~l~~ 84 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++ .++|+||++ .+++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK-EIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhc-cEEEEecCchhhcCC
Confidence 68999999999999999999999999999999999999999999999999876553 23343 599999998 3454
Q ss_pred -ccHHHHhhcCCC----CCCHH---H-HHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472 85 -TSVRENIRYGDS----SVSDE---Q-IEEAAKLANAH-G-----------------------------FISEFPSGALD 125 (181)
Q Consensus 85 -~tv~enl~~~~~----~~~~~---~-~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD 125 (181)
.|+++|+.++.. ....+ . ..++++.+++. . ++.|+||++||
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 599999975311 11111 1 12455555542 1 35577999999
Q ss_pred HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.+++.+.+.++++. + |.|||++||+++.+.. ||++++|++|++++
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999998864 3 8999999999999875 99999999999876
No 177
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.8e-37 Score=264.40 Aligned_cols=155 Identities=40% Similarity=0.641 Sum_probs=139.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+|++ ++||+|++.+|++|++
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~-i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ-IAWVPQHPFLFAGTIA 413 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh-eEEEcCCCcccCcCHH
Confidence 469999999999999999999999999999999999999999999999999999888888765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.+..+++++.++++.+++.+ ++.|+||++||+++
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 99999865556777778877665543 24466999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 164 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l 164 (181)
++.+.+.+....+++|+|+|||+++.+..||+|++|
T Consensus 494 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999998877789999999999999889999875
No 178
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.7e-36 Score=241.98 Aligned_cols=166 Identities=27% Similarity=0.382 Sum_probs=134.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCC--Cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPV--LF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~--l~ 83 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +++ .++|+||++. ++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRR-DVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhh-ceEEEecChhhhcC
Confidence 56999999999999999999999999999999999999999999999999987655432 343 4999999973 45
Q ss_pred c-ccHHHHhhcCC---CCC----CHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472 84 A-TSVRENIRYGD---SSV----SDEQIEEAAKLANAH-G-----------------------------FISEFPSGALD 125 (181)
Q Consensus 84 ~-~tv~enl~~~~---~~~----~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD 125 (181)
+ .|+.||+.++. ... ..+++.++++.+++. . ++.|+|+++||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 4 49999986531 111 123455666666653 2 35577999999
Q ss_pred HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+.+++.+.+.|+++. + |+|||++|||++.+.. ||++++|++|++++ .++.
T Consensus 183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 235 (265)
T TIGR02769 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDV 235 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCH
Confidence 999999999998864 3 8999999999999965 99999999999987 3443
No 179
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=248.25 Aligned_cols=163 Identities=28% Similarity=0.359 Sum_probs=134.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCC--CCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEP--VLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~--~l~ 83 (181)
..+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++.. .+|+ .|+||||++ .++
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~-~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQ-KIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhC-CEEEEEcCchhhcC
Confidence 4689999999999999999999999999999999999999999999999999877643 2444 499999998 466
Q ss_pred cc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCCC
Q psy10472 84 AT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG------------------------------FISEFPSGALD 125 (181)
Q Consensus 84 ~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD 125 (181)
+. |+.+++.+.. .... .+++.++++.+++.. ++.|+||++||
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 64 9998886421 1111 234566666666531 35677999999
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.++..++++|.++. .|.|+|+||||++.+.. ||+|++|++|++++.
T Consensus 187 ~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 187 VSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999998864 38999999999999976 999999999999984
No 180
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-38 Score=235.58 Aligned_cols=172 Identities=20% Similarity=0.318 Sum_probs=142.1
Q ss_pred cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~ 85 (181)
.+.++|+++|||+|++||+++|+|||||||||.+.++.|+.+|++|+|.++|.+++.++.....+..|||+||++.+|..
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~ 93 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhc
Confidence 34578999999999999999999999999999999999999999999999999999998766555679999999999976
Q ss_pred -cHHHHhhcCCC----CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 86 -SVRENIRYGDS----SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 86 -tv~enl~~~~~----~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
||+|||..... ... +.+++..++.+.+.. ++.|+||+++||.
T Consensus 94 LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi 173 (243)
T COG1137 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173 (243)
T ss_pred CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch
Confidence 99999975421 111 122334554443322 3567899999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhh-hcCCeEEEEeCCeEEeecCCchh
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~-~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
+...+.++++.++ +|..|+++-|+..+. ..|||.+++.+|++.. .+.+++
T Consensus 174 aV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla-~G~p~e 225 (243)
T COG1137 174 AVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA-EGSPEE 225 (243)
T ss_pred hHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEe-cCCHHH
Confidence 9999999999875 599999999999876 4599999999999998 465543
No 181
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=255.21 Aligned_cols=171 Identities=26% Similarity=0.330 Sum_probs=143.4
Q ss_pred CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
+.++..++|++|||++.+||+++|+|.||||||||+|+|+|.++|++|+|.++|+.+...++.+.+...|+.|+|+..++
T Consensus 16 K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 16 KSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred EEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 34455689999999999999999999999999999999999999999999999999987787777777899999999999
Q ss_pred cc-cHHHHhhcCCCCC------C----HHHHHHHHHHhcc-----------------------------ccccccCCCCC
Q psy10472 84 AT-SVRENIRYGDSSV------S----DEQIEEAAKLANA-----------------------------HGFISEFPSGA 123 (181)
Q Consensus 84 ~~-tv~enl~~~~~~~------~----~~~~~~~~~~~~~-----------------------------~~~~~~~P~~~ 123 (181)
+. ||.||+.++.... + .++..++++.+++ .-++.|+||++
T Consensus 96 p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaa 175 (500)
T COG1129 96 PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175 (500)
T ss_pred CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 86 9999998874221 1 1223344444433 11467889999
Q ss_pred CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472 124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG 174 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~ 174 (181)
|+....+.+++++++++ +|.++|+|||.++++.. ||||.+|+||+.+....
T Consensus 176 Lt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999875 69999999999999966 99999999999987433
No 182
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=239.94 Aligned_cols=166 Identities=26% Similarity=0.406 Sum_probs=132.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--V---SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p---~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +...+++ .++|+||++.
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~ 103 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRK-NIGMVFQKGN 103 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhh-ceEEEecCCc
Confidence 469999999999999999999999999999999999987 3 599999999987532 2233444 4999999999
Q ss_pred CccccHHHHhhcCCCC---CCH----HHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDSS---VSD----EQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~~---~~~----~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|++||+.++... ... +++.++++.+++.. ++.|+||
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 8888999999875211 111 22344455544311 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++. +++
T Consensus 184 ~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 238 (259)
T PRK14274 184 SALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC-NDT 238 (259)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 999999999999999987668999999999999865 999999999999873 443
No 183
>KOG0055|consensus
Probab=100.00 E-value=7.5e-37 Score=276.34 Aligned_cols=174 Identities=56% Similarity=0.891 Sum_probs=158.8
Q ss_pred CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
|.++..+||+|+||+|++|+.+||+|||||||||.+.+|-++|.|++|.|.+||+++.+++..++|++ +|.|.|+|.||
T Consensus 998 PsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~-i~lVsQEP~LF 1076 (1228)
T KOG0055|consen 998 PTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ-IGLVSQEPVLF 1076 (1228)
T ss_pred CCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh-cceeccCchhh
Confidence 44566789999999999999999999999999999999999999999999999999999999999986 99999999999
Q ss_pred cccHHHHhhcCCCCCCHHHHHHHHHHhccccccc----------------------------------------cCCCCC
Q psy10472 84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHGFIS----------------------------------------EFPSGA 123 (181)
Q Consensus 84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~P~~~ 123 (181)
+.|++|||.||....+.+++.+|++.+++..|+. |+.|++
T Consensus 1077 ~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1077 NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 9999999999954468889999998887666543 446679
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
||.++++.+.+.|.+...|+|.|+|.|.++.++.||.|+++++|+|+| .|+++++
T Consensus 1157 LDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE-~GtH~~L 1211 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE-QGTHDEL 1211 (1228)
T ss_pred hhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe-cccHHHH
Confidence 999999999999999989999999999999999999999999999999 6877654
No 184
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.5e-36 Score=236.91 Aligned_cols=159 Identities=43% Similarity=0.619 Sum_probs=129.8
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+.|++|
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS-KVSLVGQEPVLFARSLQD 106 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh-hEEEEecccHHHhhhHHH
Confidence 5999999999999999999999999999999999999999999999998876554444444 499999999888889999
Q ss_pred HhhcCCCCCCHHH---------HHHHHHHh--cccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 90 NIRYGDSSVSDEQ---------IEEAAKLA--NAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 90 nl~~~~~~~~~~~---------~~~~~~~~--~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.++........ ++++++.+ ++.. ++.|+|+++||+.++
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 9987643222111 12233333 2221 355779999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeE
Q psy10472 130 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 169 (181)
Q Consensus 130 ~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i 169 (181)
+.+.+.++.+.++.|+|++||+++++..||++++|++|++
T Consensus 187 ~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 187 QQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999987667999999999999867999999999874
No 185
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=241.50 Aligned_cols=163 Identities=26% Similarity=0.391 Sum_probs=131.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++...+ ...+++ .++|+||++.
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 112 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRR-EIGMVFQKPN 112 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhc-cEEEEecCCc
Confidence 569999999999999999999999999999999999864 79999999999885422 223344 4999999999
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|++||+.++.. . .. .+.+.++++.+++. -++.|+||
T Consensus 113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 192 (268)
T PRK14248 113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192 (268)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 888899999986421 1 11 12234444443331 13567799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.+.++++++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus 193 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 193 SALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred cccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999987667899999999998865 999999999999873
No 186
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=239.34 Aligned_cols=163 Identities=28% Similarity=0.458 Sum_probs=132.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++...+ ....++ .++|+||++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~ 95 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRK-RVGMVFQKPN 95 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHh-heEEEecCCC
Confidence 4689999999999999999999999999999999999875 7999999999885432 223343 4999999999
Q ss_pred CccccHHHHhhcCCC--CC-C----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS--SV-S----DEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~~-~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|++||+.++.. .. . .+++.++++.+++.. ++.|+|+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 888899999987521 11 1 123445555554310 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 176 ~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 999999999999999887657899999999999865 999999999999874
No 187
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=231.35 Aligned_cols=171 Identities=24% Similarity=0.328 Sum_probs=142.2
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+..++|++|||++++||+++|+||||+|||||||+|+|+.+|.+|+|.|+|++++..++.+..+..|+||||...+|+.
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 3357999999999999999999999999999999999999999999999999999998877666779999999999985
Q ss_pred cHHHHhhcCCCCCC----HH-HHHHHHHHh------------------------------ccccccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGDSSVS----DE-QIEEAAKLA------------------------------NAHGFISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~~~~~----~~-~~~~~~~~~------------------------------~~~~~~~~~P~~~LD~~~~~ 130 (181)
||+||+.++..... .+ .++++.+++ ...-++.|+|+.+|-|.-.+
T Consensus 94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~ 173 (237)
T COG0410 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173 (237)
T ss_pred cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHH
Confidence 99999998632111 11 133333322 11225678999999999999
Q ss_pred HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472 131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+++++ + |.||++|.++...+.. +||.++|++|+++. .++.++
T Consensus 174 ~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~-~G~~~e 223 (237)
T COG0410 174 EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL-SGTAAE 223 (237)
T ss_pred HHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE-ecCHHH
Confidence 9999999876 3 7899999999999865 99999999999998 455443
No 188
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=240.28 Aligned_cols=164 Identities=27% Similarity=0.429 Sum_probs=132.7
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP 80 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~ 80 (181)
.+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +....++ .++|+||++
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~ 110 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRK-HIGMVFQRP 110 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhc-ceEEEecCC
Confidence 3579999999999999999999999999999999999996 5899999999988532 2223444 499999999
Q ss_pred CCccccHHHHhhcCCCC---CC----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472 81 VLFATSVRENIRYGDSS---VS----DEQIEEAAKLANAHG---------------------------------FISEFP 120 (181)
Q Consensus 81 ~l~~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P 120 (181)
.+|+.|++||+.++... .. .+++.++++.+++.. ++.|+|
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 190 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 88888999999875211 11 123344455544321 355779
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++||+.++..+.++|+++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 191 t~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 191 ASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred cccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999987667999999999999855 999999999999873
No 189
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=243.47 Aligned_cols=162 Identities=23% Similarity=0.456 Sum_probs=130.6
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC----C-ChhhhccCcEEEEccCC--CC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH----L-DGTWLRGNVIGLINQEP--VL 82 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~----~-~~~~~r~~~i~~v~q~~--~l 82 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . +...+++ .++|++|++ .+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~-~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRK-EIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhc-cEEEEEeCcchhh
Confidence 49999999999999999999999999999999999999999999999998742 1 1233444 499999997 35
Q ss_pred ccccHHHHhhcCCC--CCCH----HHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472 83 FATSVRENIRYGDS--SVSD----EQIEEAAKLANAH-G-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 83 ~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~ 126 (181)
++.|+.||+.++.. .... +.+.++++.+++. + ++.|+|+++||+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 56799999987531 1111 2334555555552 2 355779999999
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.+++.++++|+++. .++|||++||+++.+.. ||++++|++|++++.
T Consensus 184 ~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999998764 38999999999998865 999999999999873
No 190
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=261.47 Aligned_cols=163 Identities=25% Similarity=0.380 Sum_probs=135.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....+++.++|+||++.+++. |+
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV 97 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence 46899999999999999999999999999999999999999999999999987665443333459999999988875 99
Q ss_pred HHHhhcCCC------CC---C----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCC
Q psy10472 88 RENIRYGDS------SV---S----DEQIEEAAKLANAHG-----------------------------FISEFPSGALD 125 (181)
Q Consensus 88 ~enl~~~~~------~~---~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD 125 (181)
+||+.++.. .. . .+++.++++.+++.. ++.|+||++||
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD 177 (510)
T PRK09700 98 LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177 (510)
T ss_pred HHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999987531 10 1 123455666665533 35677999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.++..++++|++++ +|+|||+||||++.+.. ||++++|++|+++.
T Consensus 178 ~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 178 NKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 999999999998864 58999999999999965 99999999999976
No 191
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.6e-36 Score=232.34 Aligned_cols=159 Identities=31% Similarity=0.483 Sum_probs=131.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
..+.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++ .++|+||++.+|+. |+.
T Consensus 12 ~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~-~i~~v~q~~~~~~~~t~~ 88 (213)
T TIGR01277 12 HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQR-PVSMLFQENNLFAHLTVR 88 (213)
T ss_pred CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhcc-ceEEEeccCccCCCCcHH
Confidence 3578999999999999999999999999999999999999999999999876433 2333 49999999998875 999
Q ss_pred HHhhcCCC---C---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 89 ENIRYGDS---S---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 89 enl~~~~~---~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
||+.++.. . ...+++.++++.+++.. ++.|+||++||+.++..+.
T Consensus 89 en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 168 (213)
T TIGR01277 89 QNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168 (213)
T ss_pred HHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 99976421 1 11234555666655432 3557799999999999999
Q ss_pred HHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 134 AALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 134 ~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++++++. + +.|+|+|||+++++.. ||++++|++|++++
T Consensus 169 ~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 169 ALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9998864 3 7999999999999865 99999999999987
No 192
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.3e-36 Score=248.63 Aligned_cols=158 Identities=30% Similarity=0.446 Sum_probs=130.8
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhccCcEEEEccCCCCccc-cHH
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+. ...++ .++|+||++.+|+. |++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR-RIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC-CeEEEecCCccCCCCcHH
Confidence 9999999999999999999999999999999999999999999998854321 12333 49999999999975 999
Q ss_pred HHhhcCCCCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 89 ENIRYGDSSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 89 enl~~~~~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
||+.++..... .+++.++++.+++.. ++.|+|+++||+.+++.+++.
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 99998632211 223566666665543 355779999999999999999
Q ss_pred HHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 136 LESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 136 l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+++. + ++|+|+||||++++.. ||++++|++|++++.
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 98864 3 8999999999999865 999999999999873
No 193
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=239.12 Aligned_cols=163 Identities=29% Similarity=0.426 Sum_probs=132.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +...+++ .++|++|++.
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 95 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRK-EVGMVFQQPT 95 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhc-cEEEEecCCc
Confidence 569999999999999999999999999999999999997 4799999999987532 2223344 4999999999
Q ss_pred CccccHHHHhhcCCC---CCC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAH----G-----------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~ 121 (181)
+|+.|++||+.++.. ... .+.+.++++.+++. . ++.|+|+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 888899999986521 111 12344555555541 1 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.+.+.++++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 176 ~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999999999987667999999999999865 999999999999873
No 194
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=259.34 Aligned_cols=164 Identities=25% Similarity=0.380 Sum_probs=135.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++...+....+++.++|+||++.+++. |+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI 96 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence 46999999999999999999999999999999999999999999999999986544333333459999999988875 99
Q ss_pred HHHhhcCCCC------CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 88 RENIRYGDSS------VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 88 ~enl~~~~~~------~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
+||+.++... .. .+++.++++.+++.. ++.|+||++||+.+
T Consensus 97 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 176 (501)
T PRK10762 97 AENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTE 176 (501)
T ss_pred HHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence 9999875321 11 123456666665543 35577999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++.+.++++++. +|.|||+||||++.+.. ||++++|++|+++..
T Consensus 177 ~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 177 TESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999998864 48999999999999865 999999999999863
No 195
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=237.78 Aligned_cols=163 Identities=30% Similarity=0.468 Sum_probs=131.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +...+++ .++|+||++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 94 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRK-RVGMVFQQPN 94 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhc-cEEEEecCCc
Confidence 4699999999999999999999999999999999999763 699999999988642 2233444 4999999998
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|+.+|+.++.. . .. .+.+.++++.+++. -++.|+|+
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 888899999987521 1 11 22334444444321 13557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++++++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 175 SALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999887668999999999998865 999999999999873
No 196
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=248.31 Aligned_cols=164 Identities=24% Similarity=0.334 Sum_probs=133.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC----CCcceEEECCEECCCCChhhh---ccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD----VSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~----p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~ 81 (181)
..+|++|||+|++||+++|+|+||||||||+++|+|+++ |++|+|.|+|+++..++...+ +++.|+||||++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 469999999999999999999999999999999999986 589999999999877665432 3345999999986
Q ss_pred --Cccc-cHHHHhhcCC-----CC----C---CHHHHHHHHHHhcccc--------------------------------
Q psy10472 82 --LFAT-SVRENIRYGD-----SS----V---SDEQIEEAAKLANAHG-------------------------------- 114 (181)
Q Consensus 82 --l~~~-tv~enl~~~~-----~~----~---~~~~~~~~~~~~~~~~-------------------------------- 114 (181)
+++. ||.+|+.+.. .. . ..+++.++++.+++..
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 4454 8999886421 00 0 1234566777776642
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++.|+||++||+.++..++++|+++. .|.|+|+||||++.+.. ||+|++|++|++++.
T Consensus 180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 35577999999999999999999864 38999999999999965 999999999999984
No 197
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=252.30 Aligned_cols=171 Identities=26% Similarity=0.382 Sum_probs=142.5
Q ss_pred CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
+.++...++++|||+|++||+.||+|+||||||||+++|.|+++|++|+|+++|+.+.-.++.+..+..||+|+|++.|+
T Consensus 12 K~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv 91 (501)
T COG3845 12 KRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91 (501)
T ss_pred EEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccc
Confidence 34455668999999999999999999999999999999999999999999999999887777766666799999999999
Q ss_pred cc-cHHHHhhcCCCC-----CC----HHHHHHHHHHhcc-----------------------------ccccccCCCCCC
Q psy10472 84 AT-SVRENIRYGDSS-----VS----DEQIEEAAKLANA-----------------------------HGFISEFPSGAL 124 (181)
Q Consensus 84 ~~-tv~enl~~~~~~-----~~----~~~~~~~~~~~~~-----------------------------~~~~~~~P~~~L 124 (181)
+. ||.|||.++... .+ .+++.++.+..++ .-++.|+||+-|
T Consensus 92 ~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVL 171 (501)
T COG3845 92 PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171 (501)
T ss_pred cccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 86 999999988532 11 2233333333322 225778899999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472 125 DNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG 174 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~ 174 (181)
-|...+++++.++.++ +|+|||+|||.+.++.. |||+-+|+.|+++....
T Consensus 172 TP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 172 TPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999875 69999999999999976 99999999999876433
No 198
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.9e-36 Score=234.16 Aligned_cols=159 Identities=25% Similarity=0.414 Sum_probs=132.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . + +.++|+||++.+++ .|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~-~~~~~~~q~~~~~~~~t~ 87 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-L-HKIGSLIESPPLYENLTA 87 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-c-ccEEEEcCCCCccccCCH
Confidence 5699999999999999999999999999999999999999999999999876432 1 2 24999999998887 499
Q ss_pred HHHhhcCC--CCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 88 RENIRYGD--SSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 88 ~enl~~~~--~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
+||+.++. ......++.++++.+++.. ++.|+|+++||+.+++.+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L 167 (223)
T TIGR03740 88 RENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167 (223)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH
Confidence 99997642 1123445566666655432 3567799999999999999999
Q ss_pred HHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 137 ESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 137 ~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++. ++.|+|++|||++++.. ||++++|++|++++.
T Consensus 168 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 168 RSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 8875 48999999999999865 999999999999873
No 199
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=239.76 Aligned_cols=163 Identities=29% Similarity=0.517 Sum_probs=132.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCCh--hhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLDG--TWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~~--~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++...+. ..+++ .++|+||++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 96 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA-KVGMVFQKPN 96 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh-hEEEEecCcc
Confidence 469999999999999999999999999999999999986 479999999998754321 22343 4999999999
Q ss_pred CccccHHHHhhcCC--CC--CC----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472 82 LFATSVRENIRYGD--SS--VS----DEQIEEAAKLANAHG---------------------------------FISEFP 120 (181)
Q Consensus 82 l~~~tv~enl~~~~--~~--~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P 120 (181)
+|+.|+.+|+.++. .. .. .+.+.++++.+++.. ++.|+|
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 88889999998641 11 11 223445566655421 245679
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++||+.+++.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 177 CSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999887668999999999999865 999999999999873
No 200
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-36 Score=246.78 Aligned_cols=164 Identities=24% Similarity=0.343 Sum_probs=132.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC----CCcceEEECCEECCCCChhhh---ccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD----VSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~----p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~ 81 (181)
..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..++...+ |++.|+||||++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 359999999999999999999999999999999999997 489999999999987765432 3345999999984
Q ss_pred --Cccc-cHHHHhhcC----CCCC---CHHHHHHHHHHhcccc--------------------------------ccccC
Q psy10472 82 --LFAT-SVRENIRYG----DSSV---SDEQIEEAAKLANAHG--------------------------------FISEF 119 (181)
Q Consensus 82 --l~~~-tv~enl~~~----~~~~---~~~~~~~~~~~~~~~~--------------------------------~~~~~ 119 (181)
+++. |+.+++... .... ..+++.++++.+++.. ++.|+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5554 777665432 1111 1234566677766632 35677
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 120 PSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
||++||+.++..++++|+++. .|.|+|+||||++.+.. ||+|++|.+|++++.
T Consensus 180 Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 180 PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999998864 38999999999999865 999999999999984
No 201
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=239.22 Aligned_cols=163 Identities=28% Similarity=0.420 Sum_probs=131.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC---CCC--CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF---YDV--SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl---~~p--~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++...+ ...+++ .++|+||++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK-NVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh-heEEEecCCc
Confidence 4689999999999999999999999999999999997 455 5899999999886432 223344 4999999998
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|+.||+.++.. . .. .+.++++++.+++.. ++.|+||
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 887899999986421 1 11 223455666555421 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999987668999999999999855 999999999999873
No 202
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=237.06 Aligned_cols=164 Identities=30% Similarity=0.473 Sum_probs=131.9
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCC-CChhhhccCcEEEEccCCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKH-LDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~-~~~~~~r~~~i~~v~q~~~ 81 (181)
.+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+...+++ .++|+||++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~-~i~~~~q~~~ 93 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI-KVGMVFQKPN 93 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh-heeEEecCCC
Confidence 35699999999999999999999999999999999999986 59999999998752 23334444 4999999999
Q ss_pred CccccHHHHhhcCCC--C-CCH----HHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VSD----EQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~~----~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|+.||+.++.. . ... +++.++++.+++. -++.|+|+
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 173 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 888899999987521 1 111 2233344433321 13567799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++++++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 174 SALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999988667999999999999866 999999999999873
No 203
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5e-36 Score=239.61 Aligned_cols=162 Identities=22% Similarity=0.379 Sum_probs=131.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Cccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~- 85 (181)
+++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++...+....+ +.++|+||++. +++.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRS-QRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHh-ccEEEEecCchhhcCcch
Confidence 4699999999999999999999999999999999999999999999999988643333333 35999999985 4454
Q ss_pred cHHHHhhcCCC---CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHH
Q psy10472 86 SVRENIRYGDS---SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 86 tv~enl~~~~~---~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~ 128 (181)
|+.+|+.+... ... .+++.++++.+++. . ++.|+|+++||+.+
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 89999865311 111 23455667666652 2 35577999999999
Q ss_pred HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++.+.+.|.++. + |.|||++||+++.+.. ||++++|++|++++
T Consensus 185 ~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 185 RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999998864 3 8999999999999976 99999999999987
No 204
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-36 Score=238.02 Aligned_cols=158 Identities=29% Similarity=0.459 Sum_probs=130.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... +. .++|+||++.+++. |+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~-~~~~v~q~~~~~~~~tv 87 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GA-ERGVVFQNEGLLPWRNV 87 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CC-cEEEEeCCCccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987532 12 38999999988874 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.+|+.++.. ... .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 167 (255)
T PRK11248 88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167 (255)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 999987421 111 233455666555432 356779999999999999
Q ss_pred HHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEe--CCeEEee
Q psy10472 133 QAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~--~G~i~~~ 172 (181)
.++|+++ + +|+|+|++|||++.+.. ||++++|+ +|++++.
T Consensus 168 ~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 168 QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 9999886 3 48999999999999865 99999998 5999873
No 205
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-36 Score=236.79 Aligned_cols=163 Identities=26% Similarity=0.456 Sum_probs=132.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++...+ ...+++ .++|+||++.
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~ 95 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRK-RVGMVFQQPN 95 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhc-eEEEEecCCc
Confidence 46999999999999999999999999999999999999997 699999999875422 223444 4999999999
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|+.||+.++.. . .. .+.+.++++.+++. -++.|+|+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 888899999987531 1 11 12233344444321 13557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus 176 ~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999887668999999999999876 999999999999873
No 206
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-36 Score=234.53 Aligned_cols=160 Identities=29% Similarity=0.473 Sum_probs=131.2
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHh
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENI 91 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl 91 (181)
.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. + +.++|+||++.+|+. |+.||+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~tv~e~l 92 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--R-RPVSMLFQENNLFSHLTVAQNI 92 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--h-ccEEEEecccccccCCcHHHHH
Confidence 489999999999999999999999999999999999999999999987654322 2 349999999998875 999999
Q ss_pred hcCCCC---CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 92 RYGDSS---VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 92 ~~~~~~---~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
.++... .. .+++.++++.+++.. ++.|+|+++||+.+++.+.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l 172 (232)
T PRK10771 93 GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLV 172 (232)
T ss_pred hcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 875211 11 234556666665432 3557799999999999999999
Q ss_pred HHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 137 ESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 137 ~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+++. + |+|+|++||+++++.. ||++++|++|++++ .++.
T Consensus 173 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~g~~ 214 (232)
T PRK10771 173 SQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW-DGPT 214 (232)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence 8863 3 8999999999999865 99999999999987 3443
No 207
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.6e-36 Score=246.84 Aligned_cols=167 Identities=28% Similarity=0.392 Sum_probs=134.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhh---ccCcEEEEccCC--
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWL---RGNVIGLINQEP-- 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~-- 80 (181)
..+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..++...+ |++.|+||||++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 45899999999999999999999999999999999999996 9999999999987765443 334599999998
Q ss_pred CCccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc--------------------------------ccccCC
Q psy10472 81 VLFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG--------------------------------FISEFP 120 (181)
Q Consensus 81 ~l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~--------------------------------~~~~~P 120 (181)
.+++. |+.+|+.+.. .... .+++.++++.+++.. ++.|+|
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45564 8888775421 1112 123455566555431 355779
Q ss_pred CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
|++||+.++..++++|+++. + |.|+|+||||++.+.. ||++++|++|++++. ++.
T Consensus 189 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g~~ 246 (330)
T PRK09473 189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-GNA 246 (330)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 99999999999999998864 3 8999999999999865 999999999999984 443
No 208
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-36 Score=258.68 Aligned_cols=164 Identities=24% Similarity=0.372 Sum_probs=136.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+....+++.++|+||++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL 97 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence 4699999999999999999999999999999999999996 8999999999987655443333459999999988875
Q ss_pred cHHHHhhcCCCC-----CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 86 SVRENIRYGDSS-----VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 86 tv~enl~~~~~~-----~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
|++||+.++... .. .+++.++++.+++.. ++.|+||++||+.
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 999999876321 11 134556666666533 3567799999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++..+.++|.++. +|.|||++|||++.+.. ||++++|++|+++..
T Consensus 178 ~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 178 ETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 9999999998864 58999999999999865 999999999999873
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=237.73 Aligned_cols=163 Identities=28% Similarity=0.460 Sum_probs=131.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...+++ .++|+||++.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 94 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRK-KVGMVFQKPT 94 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhh-hEEEEecCCc
Confidence 5689999999999999999999999999999999999884 8999999999875422 123344 4999999999
Q ss_pred CccccHHHHhhcCCC---CCC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|++||+.++.. ... .+.+.++++.+++. -++.|+|+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 888899999986421 111 12234444444331 13557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|+++..
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred cccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999987667899999999998755 999999999999873
No 210
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=237.26 Aligned_cols=163 Identities=29% Similarity=0.451 Sum_probs=131.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEP 80 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~ 80 (181)
.+.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +....++ .++|+||++
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~ 96 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRR-KIGMVFQRP 96 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhc-eEEEEecCC
Confidence 35699999999999999999999999999999999999763 489999999998654 2233344 499999999
Q ss_pred CCccccHHHHhhcCCCC---CC----HHHHHHHHHHhccc---------------------------------cccccCC
Q psy10472 81 VLFATSVRENIRYGDSS---VS----DEQIEEAAKLANAH---------------------------------GFISEFP 120 (181)
Q Consensus 81 ~l~~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P 120 (181)
.+|+.|++||+.++... .. .+.+.++++.+++. -++.|+|
T Consensus 97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (253)
T PRK14261 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176 (253)
T ss_pred ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 98888999999875321 11 12234444444321 1356779
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+++||+.+++.+.++++.+.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 177 ~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 177 CSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred cccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999887667899999999999865 99999999999987
No 211
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-36 Score=237.49 Aligned_cols=163 Identities=26% Similarity=0.389 Sum_probs=129.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CC---CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DV---SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p---~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.... ...+++ .++|+||++.
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~ 96 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRK-EIGMVFQQPN 96 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhh-cEEEEecCCc
Confidence 46999999999999999999999999999999999985 46 5999999999885422 223444 4999999999
Q ss_pred CccccHHHHhhcCC---CCCC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGD---SSVS----DEQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|++||+.++. .... .+++.++++.+++. -++.|+|+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 88889999998642 1111 12233444444321 13567799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus 177 ~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 177 SALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred cccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999887667899999999998865 999999999999873
No 212
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-36 Score=239.32 Aligned_cols=163 Identities=26% Similarity=0.411 Sum_probs=130.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++... +...+++ .++|+||++.
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~ 115 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRT-NVGMVFQKPN 115 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhh-hEEEEecCCc
Confidence 469999999999999999999999999999999999987 6999999999987532 2233444 4999999999
Q ss_pred CccccHHHHhhcCCC--CC-CH----HHHHHHHHHhcc---------------------------------ccccccCCC
Q psy10472 82 LFATSVRENIRYGDS--SV-SD----EQIEEAAKLANA---------------------------------HGFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~~-~~----~~~~~~~~~~~~---------------------------------~~~~~~~P~ 121 (181)
+|+.|+.||+.++.. .. .. +.+.++++.+++ .-++.|+|+
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 888899999986421 11 11 112333332211 113567899
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++|+++.++.|+|++|||++.+.. ||++++|++|++++.
T Consensus 196 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 196 SALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred CcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999887667999999999999865 999999999999873
No 213
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.2e-36 Score=239.32 Aligned_cols=164 Identities=26% Similarity=0.331 Sum_probs=132.7
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCC-----hhhhccCcEEEEccC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLD-----GTWLRGNVIGLINQE 79 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~-----~~~~r~~~i~~v~q~ 79 (181)
.+++|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... ...+++ .++|+||+
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~-~i~~~~q~ 94 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRA-NTGYIFQQ 94 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHh-heEEEccc
Confidence 356999999999999999999999999999999999999986 499999999875432 123333 49999999
Q ss_pred CCCccc-cHHHHhhcCCCC--------------CCHHHHHHHHHHhcccc-----------------------------c
Q psy10472 80 PVLFAT-SVRENIRYGDSS--------------VSDEQIEEAAKLANAHG-----------------------------F 115 (181)
Q Consensus 80 ~~l~~~-tv~enl~~~~~~--------------~~~~~~~~~~~~~~~~~-----------------------------~ 115 (181)
+.+|+. |+.+|+.++... ...+++.++++.+++.. +
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 174 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVI 174 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 988875 999999865210 01234455666655432 3
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 116 ISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 116 ~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.|+|+++||+.+++.+.+.|+++. +|+|+|++|||++.+.. ||++++|++|++++.
T Consensus 175 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred EecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 5677999999999999999998874 38999999999998755 999999999999873
No 214
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-37 Score=236.12 Aligned_cols=164 Identities=22% Similarity=0.419 Sum_probs=136.6
Q ss_pred CCccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 3 ~~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l 82 (181)
.+..+.+.+++|+||++++|++.+++|||||||||.+|+|+|+++|++|+|.|+|.+++.. .+. +|||+|.+-.|
T Consensus 9 tK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~-rIGyLPEERGL 83 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKN-RIGYLPEERGL 83 (300)
T ss_pred hhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhh-hcccChhhhcc
Confidence 3445667899999999999999999999999999999999999999999999999987542 233 49999999999
Q ss_pred ccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472 83 FAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 83 ~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~ 126 (181)
++. ||.|.+.|... ... ..++..+++.+++.+ ++.|+||++|||
T Consensus 84 y~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP 163 (300)
T COG4152 84 YPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP 163 (300)
T ss_pred CccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh
Confidence 985 99999988532 122 223445555544322 466889999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+.+.+.+.+.+++ +|.|||++||.++.++. ||++++|++|+.+-
T Consensus 164 VN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~ 210 (300)
T COG4152 164 VNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVL 210 (300)
T ss_pred hhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEE
Confidence 99999999998875 59999999999999977 99999999999876
No 215
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-36 Score=236.51 Aligned_cols=163 Identities=26% Similarity=0.432 Sum_probs=131.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--V---SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p---~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++...+ ...+++ .++|+||++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~ 95 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRR-RVGMVFQKPN 95 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhc-cEEEEecCCC
Confidence 469999999999999999999999999999999999986 4 6899999999886432 223444 4999999999
Q ss_pred Cccc-cHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472 82 LFAT-SVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFP 120 (181)
Q Consensus 82 l~~~-tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P 120 (181)
+|+. |+.||+.++.. . .. .+++.++++.+++.. ++.|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8874 99999986421 1 11 123455555555321 355779
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++||+.+++.+.+.|+++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus 176 ~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 176 ASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999988667899999999999855 999999999999873
No 216
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.5e-36 Score=233.46 Aligned_cols=160 Identities=28% Similarity=0.455 Sum_probs=131.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~- 84 (181)
+.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+ +.++|+||++.+|+
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR-RNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH-hheEEEcCChhhcCC
Confidence 5699999999999999999999999999999999999999999999999988655432 233 35999999999887
Q ss_pred ccHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 85 TSVRENIRYGDS---SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 85 ~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.|+.||+.++.. ... .+.+.++++.+++.. ++.|+|+++||+.+
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 599999986521 111 123455666655433 35677999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeE
Q psy10472 129 EKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI 169 (181)
Q Consensus 129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i 169 (181)
++.+.+.|+++. .++|+|++||+++....||++++|++|++
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 177 GRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999998764 38999999999987666999999999986
No 217
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-36 Score=227.95 Aligned_cols=169 Identities=25% Similarity=0.410 Sum_probs=141.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-cccc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-FATS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-~~~t 86 (181)
.+.+|+++||++++||+.+|+||||||||||||.|+|.+.|++|++.++|.++..+++.++.++ -++++|+..+ |+.|
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~-raVlpQ~s~laFpFt 91 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH-RAVLPQNSSLAFPFT 91 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHH-hhhcccCcccccceE
Confidence 3679999999999999999999999999999999999999999999999999999988876655 5899999876 7889
Q ss_pred HHHHhhcCCCCC----C--HH--HHHHHHHHhcccc-----------------------------------ccccCCCCC
Q psy10472 87 VRENIRYGDSSV----S--DE--QIEEAAKLANAHG-----------------------------------FISEFPSGA 123 (181)
Q Consensus 87 v~enl~~~~~~~----~--~~--~~~~~~~~~~~~~-----------------------------------~~~~~P~~~ 123 (181)
|+|-+.+|.... . ++ ..++++...++.. ++.|+||++
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 999999984211 1 11 2345554433222 356789999
Q ss_pred CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEeecCCchh
Q psy10472 124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
||...+...+.+.+++. +|..|+.|-||++.+. +||||++|.+|+++. .+++++
T Consensus 172 LDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~ 227 (259)
T COG4559 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQD 227 (259)
T ss_pred cchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHH
Confidence 99999999999999975 5899999999999985 599999999999998 455543
No 218
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-36 Score=234.91 Aligned_cols=161 Identities=29% Similarity=0.468 Sum_probs=133.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. + +.++|++|++.+|+. |+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--K-RPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--h-cceEEEecccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999988755432 3 349999999998865 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.+|+.++.. ... .+++..+++.+++.. ++.|+|+++||+.+++.+
T Consensus 90 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l 169 (232)
T cd03300 90 FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999986421 111 234455666555543 355779999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.++++++. + |.|||++||+++++.. ||++++|++|++.+.
T Consensus 170 ~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 170 QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99998864 3 8999999999999865 999999999999873
No 219
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=237.65 Aligned_cols=166 Identities=28% Similarity=0.458 Sum_probs=132.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .....+++ .++|+||++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 95 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRR-TIGMVFQRPN 95 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhc-ceEEEccccc
Confidence 4699999999999999999999999999999999999974 79999999998753 22333444 4999999998
Q ss_pred Cccc-cHHHHhhcCCC---CCC----HHHHHHHHHHhccc----c-----------------------------ccccCC
Q psy10472 82 LFAT-SVRENIRYGDS---SVS----DEQIEEAAKLANAH----G-----------------------------FISEFP 120 (181)
Q Consensus 82 l~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P 120 (181)
+|+. |++||+.++.. ... .+.+.++++.+++. . ++.|+|
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8875 99999986421 111 12344555555431 1 355779
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe------CCeEEeecCCc
Q psy10472 121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ------AGQIVEMLGQH 176 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~------~G~i~~~~~~~ 176 (181)
+++||+.++..+.++|+++++++|+|++||+++.+.. ||++++|+ +|++++ .++.
T Consensus 176 t~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~ 237 (258)
T PRK14241 176 CSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDT 237 (258)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCH
Confidence 9999999999999999887667899999999999865 99999997 799987 4443
No 220
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.2e-35 Score=233.60 Aligned_cols=161 Identities=31% Similarity=0.510 Sum_probs=133.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+ +.++|+||++.+|+. |+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~-~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RD-RKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hh-cCEEEEecChhhccCCcH
Confidence 469999999999999999999999999999999999999999999999998865432 23 359999999999875 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.||+.+... ... .+.+.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 90 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 169 (237)
T TIGR00968 90 RDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169 (237)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987532 111 223455555554432 355779999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.+++.+.. + ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 170 ~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 170 RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 99998864 3 7999999999999865 999999999999873
No 221
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.8e-36 Score=282.46 Aligned_cols=167 Identities=24% Similarity=0.450 Sum_probs=148.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+|+||||||||+++|+|+++ .+|+|.|||.++.+++...+|++ ++||||+|.+|++|++
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~-is~IpQdp~LF~GTIR 1309 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKA-FGVIPQKVFIFSGTFR 1309 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhc-eEEEeCCCccCccCHH
Confidence 569999999999999999999999999999999999997 79999999999999998888876 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
+||.... ..++++++++++.+++.+ ++.|+||++||+++
T Consensus 1310 ~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271 1310 KNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred HHhCccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 9997653 456788888888766543 24566999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
...+.+.|+...+++|||+|||+++.+..||+|++|++|++++ .+.++++
T Consensus 1389 e~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE-~g~p~~L 1438 (1490)
T TIGR01271 1389 LQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ-YDSIQKL 1438 (1490)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999998878899999999999999999999999999998 4655443
No 222
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=236.64 Aligned_cols=166 Identities=25% Similarity=0.396 Sum_probs=134.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ....+++ .++|+||++.
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 99 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRR-YIGMVFQQPN 99 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhh-ceEEEecCCc
Confidence 4699999999999999999999999999999999999986 799999999987542 2223344 4999999999
Q ss_pred CccccHHHHhhcCCCC--C---CHHHHHHHHHHhcccc---------------------------------ccccCCCCC
Q psy10472 82 LFATSVRENIRYGDSS--V---SDEQIEEAAKLANAHG---------------------------------FISEFPSGA 123 (181)
Q Consensus 82 l~~~tv~enl~~~~~~--~---~~~~~~~~~~~~~~~~---------------------------------~~~~~P~~~ 123 (181)
+|..|+.||+.++... . ..+.+.++++.+++.. ++.|+||++
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsg 179 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 8878999999875311 1 1234455555554321 345679999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe--------CCeEEeecCCc
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ--------AGQIVEMLGQH 176 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~--------~G~i~~~~~~~ 176 (181)
||+.++..+.+.++++.++.|+|++||+++.+.. ||++++|+ +|++++ .++.
T Consensus 180 LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~ 240 (261)
T PRK14263 180 LDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGPT 240 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCCH
Confidence 9999999999999987668999999999998865 99999996 899988 4443
No 223
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=255.43 Aligned_cols=164 Identities=23% Similarity=0.339 Sum_probs=134.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.....++.++|+||++.+++. ||
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV 90 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence 56999999999999999999999999999999999999999999999999986554333223359999999987765 99
Q ss_pred HHHhhcCCC---C--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 88 RENIRYGDS---S--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 88 ~enl~~~~~---~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.||+.++.. . .. .+++.++++.+++.. ++.|+||++||+.++
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 999987531 1 11 123455566555432 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+.++++++. +|.|+|++|||++++.. ||++++|++|++++.
T Consensus 171 ~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 171 NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 99999998864 58999999999999865 999999999999873
No 224
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.1e-35 Score=233.75 Aligned_cols=163 Identities=21% Similarity=0.364 Sum_probs=129.2
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEc-cCCCCcc-
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLIN-QEPVLFA- 84 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~-q~~~l~~- 84 (181)
+.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++ .++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~~~~-~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLR-RIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hhhcc-cEEEEcCCccccCCC
Confidence 3457999999999999999999999999999999999999999999999998764322 23343 499998 5566765
Q ss_pred ccHHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.|+.||+.+... .... +.+..+++.+++.. ++.|+|+++||+.++
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 189 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ 189 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 499999876421 1111 22344555444322 356789999999999
Q ss_pred HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.+.++|+++. + +.|||++||+++++.. ||++++|++|++++
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999998864 3 7899999999999865 99999999999876
No 225
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-35 Score=233.33 Aligned_cols=160 Identities=26% Similarity=0.470 Sum_probs=132.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVR 88 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~ 88 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+.. + +.++|+||++.+|+ .|+.
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~t~~ 89 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--K-RDISYVPQNYALFPHMTVY 89 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh--H-cCEEEEeecCccCCCccHH
Confidence 389999999999999999999999999999999999999999999999988654432 3 35999999998886 5999
Q ss_pred HHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 89 ENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 89 enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
||+.++... .. .+.+.++++.+++.. ++.|+|+++||+.+++.+.
T Consensus 90 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~ 169 (235)
T cd03299 90 KNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169 (235)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH
Confidence 999864211 11 223445565555432 3557799999999999999
Q ss_pred HHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 134 AALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 134 ~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.++++. + ++|+|++||+++++.. ||++++|++|++++.
T Consensus 170 ~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 170 EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9998864 3 8999999999999865 999999999999873
No 226
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=239.03 Aligned_cols=167 Identities=28% Similarity=0.435 Sum_probs=133.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-C----CcceEEECCEECCCCChh---hhccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-V----SSGNITISGVDLKHLDGT---WLRGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p----~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~ 80 (181)
..+++||||+|++||+++|+|.|||||||+.+.|+|+++ | .+|+|.|+|+++..++.. ++|.+.|+||||+|
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 469999999999999999999999999999999999998 4 579999999999888865 45667799999998
Q ss_pred C--Cccc-cHHHHhhcC----CCC-CC---HHHHHHHHHHhcccc--------------------------------ccc
Q psy10472 81 V--LFAT-SVRENIRYG----DSS-VS---DEQIEEAAKLANAHG--------------------------------FIS 117 (181)
Q Consensus 81 ~--l~~~-tv~enl~~~----~~~-~~---~~~~~~~~~~~~~~~--------------------------------~~~ 117 (181)
. |-|. ||.+.+.-. ... .. .+++.++++.+++.. ++.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 3 3343 776555432 111 11 223445555554432 467
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 118 EFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 118 ~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
|+||++||...+.+++++|++++ .|.++|+||||+..+.. ||||++|..|+|+|. ++.
T Consensus 178 DEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~ 238 (316)
T COG0444 178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPV 238 (316)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCH
Confidence 88999999999999999999875 39999999999999866 999999999999994 543
No 227
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=236.84 Aligned_cols=166 Identities=28% Similarity=0.442 Sum_probs=131.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+...+++ .++|+||++.
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 101 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR-RIGMVFQKPN 101 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh-hEEEEccCCc
Confidence 468999999999999999999999999999999999986 489999999998753 22333444 4999999998
Q ss_pred CccccHHHHhhcCCCC--CC---HHHHHHHHHHhccc---------------------------------cccccCCCCC
Q psy10472 82 LFATSVRENIRYGDSS--VS---DEQIEEAAKLANAH---------------------------------GFISEFPSGA 123 (181)
Q Consensus 82 l~~~tv~enl~~~~~~--~~---~~~~~~~~~~~~~~---------------------------------~~~~~~P~~~ 123 (181)
+|+.|+.||+.++... .. .+++.++++.+++. -++.|+|+++
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8878999999875321 11 12233333333321 1356779999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe---------CCeEEeecCCc
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMLGQH 176 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~---------~G~i~~~~~~~ 176 (181)
||+.+++.+.++|..+.++.|||++||+++.+.. ||++++|+ +|++++ .++.
T Consensus 182 LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~ 243 (264)
T PRK14243 182 LDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDRT 243 (264)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCCH
Confidence 9999999999999987667899999999999865 99999998 799987 4443
No 228
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-36 Score=240.41 Aligned_cols=163 Identities=26% Similarity=0.421 Sum_probs=130.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.... ...+++ .++|+||++.
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 130 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK-KIGMVFQKPN 130 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh-cEEEECCCCC
Confidence 458999999999999999999999999999999999864 49999999999875422 123343 4999999999
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH----G-----------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~ 121 (181)
+|+.|+.||+.++.. . .. .+.+.++++.+++. + ++.|+|+
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 887899999987521 1 11 12334444444331 0 3567799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.+.+.++++.++.|||++|||++++.. ||++++|++|++++.
T Consensus 211 ~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 211 SALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999987667899999999999865 999999999999873
No 229
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=238.49 Aligned_cols=163 Identities=23% Similarity=0.406 Sum_probs=131.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCCh-hhhccCcEEEEccCCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDG-TWLRGNVIGLINQEPVL 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~l 82 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+++ .++|+||++.+
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~-~i~~v~q~~~l 112 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR-RVGMLFQRPNP 112 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh-heEEeccCCcc
Confidence 5699999999999999999999999999999999999986 79999999998865432 23444 49999999998
Q ss_pred ccccHHHHhhcCCC---CCCHH----HHHHHHHHhcccc---------------------------------ccccCCCC
Q psy10472 83 FATSVRENIRYGDS---SVSDE----QIEEAAKLANAHG---------------------------------FISEFPSG 122 (181)
Q Consensus 83 ~~~tv~enl~~~~~---~~~~~----~~~~~~~~~~~~~---------------------------------~~~~~P~~ 122 (181)
|+.|+++|+.++.. ..... .+.++++.+++.. ++.|+|++
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~ 192 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 88899999987521 11221 1233444444321 35577999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+||+.+++.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus 193 ~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 193 ALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999887656899999999999865 999999999999873
No 230
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=237.57 Aligned_cols=163 Identities=28% Similarity=0.457 Sum_probs=132.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +...+++ .++|+||++.
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 116 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR-RVGMVFQRPN 116 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc-cEEEEecCCc
Confidence 468999999999999999999999999999999999987 4899999999988642 2233444 5999999998
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|+.||+.++.. . .. .+.+.++++.+++.. ++.|+|+
T Consensus 117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 196 (272)
T PRK14236 117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196 (272)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 887899999986421 1 11 123445555544321 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++++++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 197 ~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 197 SALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 999999999999999987667899999999999865 999999999999873
No 231
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.6e-36 Score=259.92 Aligned_cols=142 Identities=35% Similarity=0.580 Sum_probs=128.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.++ ...+|++ |+||||+|.+|++|++
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~-i~~V~Q~~~lF~~TI~ 425 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRR-ISVFAQDAHLFDTTVR 425 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhh-eEEEccCcccccccHH
Confidence 3599999999999999999999999999999999999999999999999999999 8888865 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~~~ 128 (181)
|||.++.+..++++++++++.+++.++ +.|+||++||+++
T Consensus 426 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 426 DNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 999998766678888888887765542 4456999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCc
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRL 152 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~ 152 (181)
++.+.+.+.+..+++|+|+|||++
T Consensus 506 e~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 506 ESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999877899999999985
No 232
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=234.39 Aligned_cols=163 Identities=26% Similarity=0.418 Sum_probs=129.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ....+++ .++|+||++.
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 95 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRR-RVGMVFQKPN 95 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhc-eeEEEeccCc
Confidence 56999999999999999999999999999999999999874 89999999988642 2233444 4999999999
Q ss_pred Cccc-cHHHHhhcCCC--C-CCHH----HHHHHHHHhccc---------------------------------cccccCC
Q psy10472 82 LFAT-SVRENIRYGDS--S-VSDE----QIEEAAKLANAH---------------------------------GFISEFP 120 (181)
Q Consensus 82 l~~~-tv~enl~~~~~--~-~~~~----~~~~~~~~~~~~---------------------------------~~~~~~P 120 (181)
+|+. |+.||+.++.. . ...+ ...++++.+++. -++.|+|
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8875 99999976421 1 1121 122222222211 1356779
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 176 ~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 176 TSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999987667999999999999875 999999999999873
No 233
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.9e-36 Score=230.31 Aligned_cols=157 Identities=28% Similarity=0.459 Sum_probs=126.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCcc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~ 84 (181)
.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++. ...+++.++|++|++.+|+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 3569999999999999999999999999999999999999999999999998654332 2222335999999999887
Q ss_pred -ccHHHHhhcCCC--CC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472 85 -TSVRENIRYGDS--SV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES 128 (181)
Q Consensus 85 -~tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~ 128 (181)
.|++||+.++.. .. ..+++.++++.+++.. ++.|+|+++||+.+
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 599999987421 11 1233455666555432 35677999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE
Q psy10472 129 EKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL 164 (181)
Q Consensus 129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l 164 (181)
++.+.+.++++. ++.|+|++||+++.+..||++++|
T Consensus 170 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 170 RDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999998864 489999999999977679999875
No 234
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.2e-35 Score=232.56 Aligned_cols=154 Identities=29% Similarity=0.412 Sum_probs=127.0
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHH
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVREN 90 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~en 90 (181)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. + .+|+||++.+|+. |+.||
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~-~~~v~q~~~l~~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----D-RMVVFQNYSLLPWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----h-heEEecCcccCCCCCHHHH
Confidence 579999999999999999999999999999999999999999999998765321 1 4899999998874 99999
Q ss_pred hhcCC----CCCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 91 IRYGD----SSVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 91 l~~~~----~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
+.++. ..... +.+.++++.+++.. ++.|+|+++||+.+++.+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 97641 11121 23455566555432 3567799999999999999
Q ss_pred HHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 134 AALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 134 ~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.|.++. + |+|||++||+++.+.. ||++++|++|++++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 9998763 3 8999999999999865 99999999999976
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=254.70 Aligned_cols=163 Identities=25% Similarity=0.393 Sum_probs=134.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++.+++. |+
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence 46999999999999999999999999999999999999999999999999986544332223359999999988875 99
Q ss_pred HHHhhcCCC----C-CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 88 RENIRYGDS----S-VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 88 ~enl~~~~~----~-~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.+|+.++.. . .. .+++.++++.+++.. ++.|+||++||+.++
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (501)
T PRK11288 97 AENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176 (501)
T ss_pred HHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence 999987531 1 11 234556666665532 356779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.+.++|+++. +|+|||+||||++++.. ||++++|++|+++.
T Consensus 177 ~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 177 EQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999998864 58999999999999866 99999999999976
No 236
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=229.64 Aligned_cols=156 Identities=26% Similarity=0.371 Sum_probs=127.2
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCCCCccc-cHH
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++ .++|+||++.+|+. |+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR-KIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh-cEEEEecCCccCCCCCHH
Confidence 99999999 999999999999999999999999999999999999875322 112333 49999999998864 999
Q ss_pred HHhhcCCCCC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 89 ENIRYGDSSV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 89 enl~~~~~~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
+|+.++.... ..+++.++++.+++.. ++.|+||++||+.+++.+.++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 9998753211 1233455666555432 356779999999999999999
Q ss_pred HHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 136 LESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 136 l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++++. + |+|+|++||+++++.. ||++++|++|++++
T Consensus 174 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 98864 3 8999999999999865 99999999999976
No 237
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.8e-35 Score=231.52 Aligned_cols=159 Identities=30% Similarity=0.398 Sum_probs=127.9
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV----SSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA 84 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~ 84 (181)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..+++.++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh---hhhhheeEEEecCchhhcCc
Confidence 58999999999999999999999999999999999999 899999999987543 233335999999985 344
Q ss_pred -ccHHHHhhcCCC---CCC---HHHHHHHHHHhccc---c-----------------------------ccccCCCCCCC
Q psy10472 85 -TSVRENIRYGDS---SVS---DEQIEEAAKLANAH---G-----------------------------FISEFPSGALD 125 (181)
Q Consensus 85 -~tv~enl~~~~~---~~~---~~~~~~~~~~~~~~---~-----------------------------~~~~~P~~~LD 125 (181)
.|+.+|+.+... ... .+++.++++.+++. . ++.|+||++||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 489998764311 111 23355666666554 1 35577999999
Q ss_pred HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+++.+.+.++++. + ++|||++||+++.+.. ||++++|++|++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999998864 3 7999999999999865 999999999999873
No 238
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.9e-35 Score=235.09 Aligned_cols=164 Identities=22% Similarity=0.312 Sum_probs=129.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE-----CCCCChhhh---ccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD-----LKHLDGTWL---RGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~~---r~~~i~~v~q~~ 80 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+.... +++.++|+||++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 469999999999999999999999999999999999999999999999998 665543321 233599999998
Q ss_pred C--Ccc-ccHHHHhhcCC---CCCC----HHHHHHHHHHhcccc------------------------------ccccCC
Q psy10472 81 V--LFA-TSVRENIRYGD---SSVS----DEQIEEAAKLANAHG------------------------------FISEFP 120 (181)
Q Consensus 81 ~--l~~-~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P 120 (181)
. ++. .|+.+|+.+.. .... .+.+.++++.+++.. ++.|+|
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4 444 38888876421 1111 223445555555421 355779
Q ss_pred CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++||+.+++.+.+.++.+. + |.|+|++||+++.+.. ||++++|++|++++.
T Consensus 179 t~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999998764 3 8999999999999975 999999999999873
No 239
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=237.54 Aligned_cols=163 Identities=29% Similarity=0.500 Sum_probs=131.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +...+++ .++|+||++.
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~-~i~~v~q~~~ 130 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRR-RIGMVFQKPN 130 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhc-cEEEEecCCc
Confidence 469999999999999999999999999999999999987 6899999999987542 2233444 5999999998
Q ss_pred CccccHHHHhhcCCC--CC---CHHHHHHHHHHhcccc---------------------------------ccccCCCCC
Q psy10472 82 LFATSVRENIRYGDS--SV---SDEQIEEAAKLANAHG---------------------------------FISEFPSGA 123 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~~---~~~~~~~~~~~~~~~~---------------------------------~~~~~P~~~ 123 (181)
+|+.|+.||+.++.. .. ..++++++++.+++.. ++.|+|+++
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~ 210 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 887899999986421 11 1234455565554320 355779999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEE-EEeCCeEEee
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIV-VLQAGQIVEM 172 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~-~l~~G~i~~~ 172 (181)
||+.+++.+.++|+++.++.|+|++||+++.+.. |||++ +|++|++++.
T Consensus 211 LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 211 LDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 9999999999999987656899999999999865 99975 5799999873
No 240
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=234.56 Aligned_cols=166 Identities=28% Similarity=0.432 Sum_probs=132.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++... ....+++ .++|+||++.
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 98 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRR-QIGMVFQRPN 98 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhh-heEEEecccc
Confidence 4689999999999999999999999999999999999985 489999999987532 2233444 4999999999
Q ss_pred CccccHHHHhhcCCC---CCC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|+.||+.++.. ... .+.+.++++.+++.. ++.|+||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 888899999976421 111 123344555444310 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe-----CCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-----AGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~-----~G~i~~~~~~~ 176 (181)
++||+.++..+.+.|+.+.+++|+|++||+++++.. ||++++|+ +|++++ .++.
T Consensus 179 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~ 238 (259)
T PRK14260 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVT 238 (259)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCH
Confidence 999999999999999887667999999999999865 99999998 599987 4443
No 241
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.8e-35 Score=224.75 Aligned_cols=164 Identities=29% Similarity=0.384 Sum_probs=132.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++++++||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+....++..++|+||++.+++.
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 4699999999999999999999999999999999999 5899999999999987766444333349999999988876
Q ss_pred cHHHHhhcCCCCCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh--cC
Q psy10472 86 SVRENIRYGDSSVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ--NA 158 (181)
Q Consensus 86 tv~enl~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~--~~ 158 (181)
++.+++.......+ .+++.-+...+ +..-++.|+||++||+.++..+.++|+++. +++|+|++||+++.+. .|
T Consensus 93 ~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~ 172 (200)
T cd03217 93 KNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKP 172 (200)
T ss_pred cHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhC
Confidence 88888743221222 22222222222 334467899999999999999999998875 4899999999999986 69
Q ss_pred CeEEEEeCCeEEee
Q psy10472 159 DLIVVLQAGQIVEM 172 (181)
Q Consensus 159 d~v~~l~~G~i~~~ 172 (181)
|++++|++|++++.
T Consensus 173 d~i~~l~~G~i~~~ 186 (200)
T cd03217 173 DRVHVLYDGRIVKS 186 (200)
T ss_pred CEEEEEECCEEEEE
Confidence 99999999999873
No 242
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-35 Score=235.15 Aligned_cols=163 Identities=29% Similarity=0.409 Sum_probs=131.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC--------cceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--------SGNITISGVDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~--------~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++...+...+++ .++|+||++
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~v~q~~ 92 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLAR-LRAVLPQAA 92 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHh-hcEEecccC
Confidence 46999999999999999999999999999999999999998 999999999887655544454 489999998
Q ss_pred CC-ccccHHHHhhcCCCC-------C---CHHHHHHHHHHhcc-------------------------------------
Q psy10472 81 VL-FATSVRENIRYGDSS-------V---SDEQIEEAAKLANA------------------------------------- 112 (181)
Q Consensus 81 ~l-~~~tv~enl~~~~~~-------~---~~~~~~~~~~~~~~------------------------------------- 112 (181)
.+ ++.|+.||+.++... . ..+.+.++++.+++
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 64 557999999875210 0 11223444433322
Q ss_pred -ccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 113 -HGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 113 -~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.-++.|+||++||+.+++.+.++++++. + ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 2244578999999999999999998864 4 8999999999999865 999999999999873
No 243
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=235.21 Aligned_cols=166 Identities=27% Similarity=0.431 Sum_probs=131.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ....+++ .++|+||++.
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~-~i~~v~q~~~ 111 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRR-QVGMVFQRPN 111 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhh-cEEEEccCCc
Confidence 4689999999999999999999999999999999999863 699999999987532 2223344 4999999998
Q ss_pred CccccHHHHhhcCCCC--C---CHHHHHHHHHHhccc---------------------------------cccccCCCCC
Q psy10472 82 LFATSVRENIRYGDSS--V---SDEQIEEAAKLANAH---------------------------------GFISEFPSGA 123 (181)
Q Consensus 82 l~~~tv~enl~~~~~~--~---~~~~~~~~~~~~~~~---------------------------------~~~~~~P~~~ 123 (181)
+|+.|+.+|+.++... . ..+.+.++++.+++. -++.|+|+++
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 8877999999875211 1 112233344443321 1356779999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe---------CCeEEeecCCc
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMLGQH 176 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~---------~G~i~~~~~~~ 176 (181)
||+.+++.+.++|+++.++.|||++|||++.+.. ||++++|+ +|++++ .++.
T Consensus 192 LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~~ 253 (274)
T PRK14265 192 LDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FSPT 253 (274)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eCCH
Confidence 9999999999999987667999999999999865 99999998 899988 4443
No 244
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.3e-36 Score=249.51 Aligned_cols=169 Identities=37% Similarity=0.582 Sum_probs=148.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
.+++++++||++.+||.++|+||||||||||.|+|.|..+|.+|.|.+||-++.+++...+-++ |||+||+-.||++||
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~h-iGYLPQdVeLF~GTI 426 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH-IGYLPQDVELFDGTI 426 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccc-cCcCcccceecCCcH
Confidence 3689999999999999999999999999999999999999999999999999999998888765 999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCHH
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDNE 127 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~~ 127 (181)
.|||+-.....+.+.+.++.+..+..++ +.|+|.++||.+
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 9999865555666777777766654442 456699999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
.+..+.+.|...+ +|.|+|+|||.++.+..+|+|++|++|++.. +++.++
T Consensus 507 GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~-FG~r~e 557 (580)
T COG4618 507 GEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA-FGPREE 557 (580)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHh-cCCHHH
Confidence 9999999998764 6999999999999999999999999999876 555443
No 245
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=233.08 Aligned_cols=163 Identities=28% Similarity=0.432 Sum_probs=129.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--V---SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p---~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++... ....+++ .++|+||++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~ 96 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRK-QVGMVFQQPN 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcC-eEEEEECCCc
Confidence 469999999999999999999999999999999999975 5 599999999988532 2223444 5999999998
Q ss_pred CccccHHHHhhcCC--CC-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472 82 LFATSVRENIRYGD--SS-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~--~~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~ 121 (181)
+|+.|+++|+.++. .. .. .+.+.++++.+++. -++.|+|+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 88889999998642 11 11 12233333333221 13567799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.+.++|+++.++.|+|+|||+++.+.. ||++++|++|++++.
T Consensus 177 ~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999887656899999999999865 999999999999873
No 246
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-34 Score=229.67 Aligned_cols=161 Identities=22% Similarity=0.348 Sum_probs=129.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVR 88 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~ 88 (181)
.+|+++||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++ .++|+||++.++. .|+.
T Consensus 10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELAR-HRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhh-heEEecccCccCCCccHH
Confidence 37999999999999999999999999999999999986 4999999999987665555444 4899999986664 5999
Q ss_pred HHhhcCCCC-CC----HHHHHHHHHHhc------------------------------------cccccccCCCCCCCHH
Q psy10472 89 ENIRYGDSS-VS----DEQIEEAAKLAN------------------------------------AHGFISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~~~-~~----~~~~~~~~~~~~------------------------------------~~~~~~~~P~~~LD~~ 127 (181)
+|+.++... .. .+++.++++.++ ..-++.|+|+++||+.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 999875321 11 122333333221 1334568899999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++.+.++++++. ++.|+|++||+++.+.. ||++++|++|++++.
T Consensus 168 ~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 168 QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999998875 58999999999998855 999999999999873
No 247
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.9e-35 Score=223.77 Aligned_cols=159 Identities=29% Similarity=0.440 Sum_probs=129.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..+++ .++|+||++.+|+.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~-~i~~~~q~~~~~~~~ 97 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRK-IIGYVPQDDILHPTL 97 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hhhhh-eEEEccCcccCCCCC
Confidence 56999999999999999999999999999999999999 9999999999998753 23344 49999999988875
Q ss_pred cHHHHhhcCCC--CCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hhh-
Q psy10472 86 SVRENIRYGDS--SVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TVQ- 156 (181)
Q Consensus 86 tv~enl~~~~~--~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~-~~~- 156 (181)
|+.||+.++.. ..+ .+++.-+...+ ...-++.|+|+++||+.+++.+.++++++. +++|+|++||+++ .+.
T Consensus 98 t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 177 (194)
T cd03213 98 TVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFE 177 (194)
T ss_pred cHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHH
Confidence 99999986421 122 22222222222 334467899999999999999999998865 4899999999996 565
Q ss_pred cCCeEEEEeCCeEEe
Q psy10472 157 NADLIVVLQAGQIVE 171 (181)
Q Consensus 157 ~~d~v~~l~~G~i~~ 171 (181)
.||++++|++|++.+
T Consensus 178 ~~d~v~~l~~G~i~~ 192 (194)
T cd03213 178 LFDKLLLLSQGRVIY 192 (194)
T ss_pred hcCEEEEEeCCEEEe
Confidence 499999999999875
No 248
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=233.67 Aligned_cols=163 Identities=26% Similarity=0.420 Sum_probs=131.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCC----CChhhhccCcEEEEccC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKH----LDGTWLRGNVIGLINQE 79 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~----~~~~~~r~~~i~~v~q~ 79 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .....+++ .++|+||+
T Consensus 29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~-~i~~~~q~ 107 (265)
T PRK14252 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRM-RISMVFQK 107 (265)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhc-cEEEEccC
Confidence 4699999999999999999999999999999999999875 79999999987642 12223444 49999999
Q ss_pred CCCccccHHHHhhcCCC--CC-----CHHHHHHHHHHhccc----c-----------------------------ccccC
Q psy10472 80 PVLFATSVRENIRYGDS--SV-----SDEQIEEAAKLANAH----G-----------------------------FISEF 119 (181)
Q Consensus 80 ~~l~~~tv~enl~~~~~--~~-----~~~~~~~~~~~~~~~----~-----------------------------~~~~~ 119 (181)
+.+|+.|++||+.++.. .. ..+.+..+++.+++. . ++.|+
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 187 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99888899999986521 11 123344455444431 0 35577
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+++||+.+++.+.+.++++.++.|+|+|||+++++.. ||++++|++|++++.
T Consensus 188 Pt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 188 PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999987667899999999999865 999999999999874
No 249
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.8e-35 Score=252.74 Aligned_cols=164 Identities=27% Similarity=0.376 Sum_probs=134.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+....+++.++|+||++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 5699999999999999999999999999999999999987 7999999999987655443333459999999988875
Q ss_pred cHHHHhhcCCCC------CC----HHHHHHHHHHhcccc------------------------------ccccCCCCCCC
Q psy10472 86 SVRENIRYGDSS------VS----DEQIEEAAKLANAHG------------------------------FISEFPSGALD 125 (181)
Q Consensus 86 tv~enl~~~~~~------~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD 125 (181)
|+.||+.++... .. .+++.++++.+++.. ++.|+||++||
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 999999875311 11 123455666665532 34567999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+++.+.++|++++ +|+|||+||||++++.. ||++++|++|+++..
T Consensus 174 ~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 999999999998864 58999999999999866 999999999999863
No 250
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.8e-35 Score=228.07 Aligned_cols=160 Identities=28% Similarity=0.441 Sum_probs=128.4
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
.+++++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ..+++ .++|+||++.+|+
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~~-~i~~~~q~~~~~~ 94 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQK-CVAYVRQDDILLP 94 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhcc-cEEEeCCCCccCc
Confidence 3679999999999999999999999999999999999999 999999999998742 23444 5999999999888
Q ss_pred c-cHHHHhhcCCC----C-CCH----HHHHH-HHHHhcccc-----------------------------ccccCCCCCC
Q psy10472 85 T-SVRENIRYGDS----S-VSD----EQIEE-AAKLANAHG-----------------------------FISEFPSGAL 124 (181)
Q Consensus 85 ~-tv~enl~~~~~----~-~~~----~~~~~-~~~~~~~~~-----------------------------~~~~~P~~~L 124 (181)
. |+.||+.++.. . ... ....+ .++.+++.. ++.|+|+++|
T Consensus 95 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 95 GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 6 99999986421 1 011 11222 444433321 3557799999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecCc-hhhh-cCCeEEEEeCCeEEe
Q psy10472 125 DNESEKLVQAALESAC-KGRTVLMIAHRL-STVQ-NADLIVVLQAGQIVE 171 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~-~~~tii~vtHd~-~~~~-~~d~v~~l~~G~i~~ 171 (181)
|+.++..+.++++++. ++.|+|++||++ +.+. .||++++|++|++++
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999998864 489999999998 4664 599999999999986
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-35 Score=223.09 Aligned_cols=158 Identities=24% Similarity=0.413 Sum_probs=127.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ...++ .++|++|++.+|+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~-~i~~~~q~~~~~~~~ 94 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQR-STGYVEQQDVHSPNL 94 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhh-ceEEecccCccccCC
Confidence 46999999999999999999999999999999999986 489999999999874 23343 49999999988875
Q ss_pred cHHHHhhcCCC--CCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh-h-h
Q psy10472 86 SVRENIRYGDS--SVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLST-V-Q 156 (181)
Q Consensus 86 tv~enl~~~~~--~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~-~-~ 156 (181)
|++||+.++.. ..+ .+++.-+...+ ...-++.|+|+++||+.+++.+++.+++++ +++|+|++||+++. + .
T Consensus 95 tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~ 174 (192)
T cd03232 95 TVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFE 174 (192)
T ss_pred cHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHh
Confidence 99999987421 122 22222222222 234467899999999999999999998865 48999999999984 5 4
Q ss_pred cCCeEEEEeC-CeEEe
Q psy10472 157 NADLIVVLQA-GQIVE 171 (181)
Q Consensus 157 ~~d~v~~l~~-G~i~~ 171 (181)
.||++++|++ |++++
T Consensus 175 ~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 175 KFDRLLLLKRGGKTVY 190 (192)
T ss_pred hCCEEEEEcCCCeEEe
Confidence 5999999999 99976
No 252
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-35 Score=230.59 Aligned_cols=163 Identities=29% Similarity=0.477 Sum_probs=131.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+.. |++|+|.++|+++...+ ....++ .++|+||++.
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~ 94 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRK-KVGMVFQKPN 94 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhh-heEEEecCCc
Confidence 469999999999999999999999999999999999864 48999999999876422 233444 4999999999
Q ss_pred CccccHHHHhhcCCC---CCCH----HHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS---SVSD----EQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~---~~~~----~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|+.+|+.++.. .... +++.++++.+++.. ++.|+|+
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 888899999986521 1111 22334444443311 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.++..+.++|+++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus 175 ~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 175 SALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 999999999999999987668999999999999866 999999999999873
No 253
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=233.37 Aligned_cols=166 Identities=27% Similarity=0.451 Sum_probs=132.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHL--DGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~ 81 (181)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... +...+++ .++|+||++.
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~ 98 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRR-QVSMVHPKPN 98 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhc-cEEEEecCCc
Confidence 46899999999999999999999999999999999999985 89999999987432 2233444 4999999998
Q ss_pred CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472 82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~ 121 (181)
+|+.|+.||+.++.. . .. .+.+.++++.+++.. ++.|+|+
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~ 178 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 888899999976421 1 11 223445555554321 3557799
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeC-----CeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA-----GQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~-----G~i~~~~~~~ 176 (181)
++||+.+++.+.+.++.++ ++.|+|+|||+++.+.. ||++++|++ |++++ .++.
T Consensus 179 ~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~ 240 (261)
T PRK14258 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLT 240 (261)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE-eCCH
Confidence 9999999999999998753 48999999999999865 999999999 99987 4444
No 254
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=259.07 Aligned_cols=163 Identities=25% Similarity=0.320 Sum_probs=134.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCC--CCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEP--VLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~--~l~ 83 (181)
..+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++ .|+|+||++ .++
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~-~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR-DIQFIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcC-CeEEEecCchhhcC
Confidence 3589999999999999999999999999999999999999999999999998765432 2333 599999997 467
Q ss_pred cc-cHHHHhhcCC---CCCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472 84 AT-SVRENIRYGD---SSVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALD 125 (181)
Q Consensus 84 ~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD 125 (181)
+. ||.+|+.++. .... .+++.++++.+++. . ++.|+||++||
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 64 9999997642 1111 23455667776663 2 35677999999
Q ss_pred HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.++..++++|+++. + |.|||+||||++.+.. ||+|++|++|++++.
T Consensus 496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999998864 3 8999999999999866 999999999999873
No 255
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-35 Score=232.31 Aligned_cols=165 Identities=26% Similarity=0.468 Sum_probs=131.9
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC------EECCCCChhhhccCcEEEEccCC
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG------VDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g------~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
+.+++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| +++...+...+++ .++|+||++
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~-~i~~~~q~~ 99 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK-EVGMVFQQP 99 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc-ceEEEccCC
Confidence 335699999999999999999999999999999999999999997777666 4444344444454 499999999
Q ss_pred CCccc-cHHHHhhcCCC---CCCH----HHHHHHHHHhcccc---------------------------------ccccC
Q psy10472 81 VLFAT-SVRENIRYGDS---SVSD----EQIEEAAKLANAHG---------------------------------FISEF 119 (181)
Q Consensus 81 ~l~~~-tv~enl~~~~~---~~~~----~~~~~~~~~~~~~~---------------------------------~~~~~ 119 (181)
.+|+. |+++|+.++.. .... +.+.++++.+++.. ++.|+
T Consensus 100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE 179 (257)
T PRK14246 100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE 179 (257)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 98875 99999987521 1111 23455566655521 24567
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
||++||+.+++.+.+.+.++.++.|+|+|||+++.+.. ||++++|++|++++.
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 180 PTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred CCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999887667999999999999955 999999999999874
No 256
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=9.4e-35 Score=230.13 Aligned_cols=167 Identities=26% Similarity=0.378 Sum_probs=133.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....++..++|+||++.+++.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 4699999999999999999999999999999999998 6899999999999987665444333248899999988876
Q ss_pred cHHHHhhcCCCC---------CC----HHHHHHHHHHhcccc-------------------------------ccccCCC
Q psy10472 86 SVRENIRYGDSS---------VS----DEQIEEAAKLANAHG-------------------------------FISEFPS 121 (181)
Q Consensus 86 tv~enl~~~~~~---------~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~ 121 (181)
|+.+|+.+.... .. .+.+.++++.+++.. ++.|+||
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 899998754210 01 123345555544421 3456799
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~ 176 (181)
++||+.+++.+.++|+++. +|.|||++||+++.+.. ||++++|++|++++. +++
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~-~~~ 236 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT-GDA 236 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe-cCh
Confidence 9999999999999998864 58999999999998864 899999999999873 443
No 257
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-35 Score=251.81 Aligned_cols=162 Identities=17% Similarity=0.338 Sum_probs=132.6
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-hhccCcEEEEccCC---CCccc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-WLRGNVIGLINQEP---VLFAT 85 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~~i~~v~q~~---~l~~~ 85 (181)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..++ .++|+||++ .+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK-GMAYITESRRDNGFFPN 355 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC-CcEEccCccccCCCcCC
Confidence 489999999999999999999999999999999999999999999999988654432 2333 499999984 57765
Q ss_pred -cHHHHhhcCCCC------------CC---HHHHHHHHHHhccc-c-----------------------------ccccC
Q psy10472 86 -SVRENIRYGDSS------------VS---DEQIEEAAKLANAH-G-----------------------------FISEF 119 (181)
Q Consensus 86 -tv~enl~~~~~~------------~~---~~~~~~~~~~~~~~-~-----------------------------~~~~~ 119 (181)
|+.||+.++... .. .+.+.++++.+++. + ++.|+
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 999999875210 01 12345667777664 2 35577
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 120 PSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
||++||+.+++.++++|+++. +|.|||+||||++.+.. ||++++|++|+++..
T Consensus 436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999998864 58999999999999865 999999999999874
No 258
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.5e-35 Score=253.75 Aligned_cols=163 Identities=21% Similarity=0.284 Sum_probs=135.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++|++|++.+|++|++
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~ 414 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL-FSAVFTDFHLFDQLLG 414 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh-eEEEecChhHHHHhhc
Confidence 358999999999999999999999999999999999999999999999999988887777765 9999999999999998
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------ccccccCCCCCCCHHHHHHHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------HGFISEFPSGALDNESEKLVQA 134 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~P~~~LD~~~~~~i~~ 134 (181)
+| + ...+++.++++++.+++ .-++.|+||++||+++++.+.+
T Consensus 415 ~n---~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~ 490 (547)
T PRK10522 415 PE---G-KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ 490 (547)
T ss_pred cc---c-CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 88 1 11223333333333222 1145678999999999999999
Q ss_pred HHHHh-c-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 135 ALESA-C-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 135 ~l~~~-~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.+. + +++|+|+|||+++.+..||++++|++|++++..+.+
T Consensus 491 ~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~ 534 (547)
T PRK10522 491 VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEE 534 (547)
T ss_pred HHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCc
Confidence 88653 3 489999999999988889999999999999865543
No 259
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-34 Score=224.39 Aligned_cols=159 Identities=23% Similarity=0.344 Sum_probs=125.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~~ 85 (181)
.++++++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+. ...+++.++|++|++.+|+.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 469999999999999999999999999999999999999999999999988754432 11122359999999988877
Q ss_pred cHHHHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCC
Q psy10472 86 SVRENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALD 125 (181)
Q Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD 125 (181)
|++||+.++... ..++..++++.+++. -++.|+|+++||
T Consensus 94 t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 94 TVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred cHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 999999886322 222223333332211 035577999999
Q ss_pred HHHHHHHHH--HHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472 126 NESEKLVQA--ALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQ 168 (181)
Q Consensus 126 ~~~~~~i~~--~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~ 168 (181)
+.+++.+++ +++.+. ++.|+|++||+++.+..||++++|++|.
T Consensus 173 ~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 173 IHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999988 566554 4899999999999887799999999873
No 260
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=9.6e-35 Score=232.33 Aligned_cols=163 Identities=29% Similarity=0.407 Sum_probs=131.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCC--Cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPV--LF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~--l~ 83 (181)
+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++ .++|+||++. ++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRR-DIQMVFQDSISAVN 103 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHh-cEEEEEcChhhccC
Confidence 5699999999999999999999999999999999999999999999999988765432 2344 4999999983 44
Q ss_pred c-ccHHHHhhcCCC---CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472 84 A-TSVRENIRYGDS---SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALD 125 (181)
Q Consensus 84 ~-~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD 125 (181)
+ .|+.+|+.+... ... ...+.++++.+++. . ++.|+|+++||
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 4 499999864211 111 12345566655543 1 35677999999
Q ss_pred HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+++.+.++++++. + +.|+|++||+++.+.. ||++++|++|++++.
T Consensus 184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 999999999998864 3 8999999999999975 999999999999873
No 261
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.3e-34 Score=222.44 Aligned_cols=155 Identities=23% Similarity=0.393 Sum_probs=127.6
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
.+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++ .++|++|++.+++ .|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIAR-GLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhh-heEEeccccccCCCcC
Confidence 356899999999999999999999999999999999999999999999999875432 23443 4999999998875 59
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
++||+.+.......++++++++.+++.. ++.|+|+++||+.+++.+.+.++
T Consensus 90 v~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 169 (201)
T cd03231 90 VLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169 (201)
T ss_pred HHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9999987643234455666666665533 35577999999999999999998
Q ss_pred Hhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472 138 SAC-KGRTVLMIAHRLSTVQN-ADLIVVL 164 (181)
Q Consensus 138 ~~~-~~~tii~vtHd~~~~~~-~d~v~~l 164 (181)
++. +|.|+|++||+...... |++++++
T Consensus 170 ~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 170 GHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHhCCCEEEEEecCchhhhhccceeEec
Confidence 764 58999999999887754 9999887
No 262
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=232.17 Aligned_cols=158 Identities=25% Similarity=0.433 Sum_probs=126.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC---ccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL---FAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l---~~~ 85 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++|+||++.+ ++.
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~~~~~~~ 95 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPV 95 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEEEeccccccccCCCc
Confidence 469999999999999999999999999999999999999999999999998642 1222349999999865 234
Q ss_pred cHHHHhhcCCC-------CC---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472 86 SVRENIRYGDS-------SV---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 86 tv~enl~~~~~-------~~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~ 126 (181)
++.+|+.++.. .. ..+.+.++++.+++.. ++.|+|+++||+
T Consensus 96 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~ 175 (272)
T PRK15056 96 LVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175 (272)
T ss_pred chhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 78888865311 01 1223455666655432 355779999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+++.+.++|+++. +|+|||++||+++.+.. ||+++++ +|++++
T Consensus 176 ~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 176 KTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 99999999998874 58999999999998865 9999877 899987
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=235.37 Aligned_cols=166 Identities=30% Similarity=0.471 Sum_probs=132.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.... ...+++ .++|+||++.
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~-~i~~v~q~~~ 136 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRK-RVGMVFQSPN 136 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhh-ceEEEccCCc
Confidence 469999999999999999999999999999999999986 68999999999875422 233444 4999999999
Q ss_pred CccccHHHHhhcCCCC--------------C--C---HHHHHHHHHHhccc-----------------------------
Q psy10472 82 LFATSVRENIRYGDSS--------------V--S---DEQIEEAAKLANAH----------------------------- 113 (181)
Q Consensus 82 l~~~tv~enl~~~~~~--------------~--~---~~~~~~~~~~~~~~----------------------------- 113 (181)
+|+.|++||+.++... . . .+.+.++++.+++.
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 8888999999875210 0 0 12344455544331
Q ss_pred ----cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeE-EEEeCCeEEeecCCc
Q psy10472 114 ----GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLI-VVLQAGQIVEMLGQH 176 (181)
Q Consensus 114 ----~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v-~~l~~G~i~~~~~~~ 176 (181)
-++.|+|+++||+.++..+.++|+++.++.|+|++||+++.+.. ||++ ++|++|++++ .++.
T Consensus 217 ~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~-~g~~ 284 (305)
T PRK14264 217 VDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE-YDDT 284 (305)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE-eCCH
Confidence 13567799999999999999999987667899999999999865 9997 5779999987 3443
No 264
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.9e-34 Score=214.91 Aligned_cols=147 Identities=29% Similarity=0.436 Sum_probs=119.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..+.+++.++|+||
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------- 82 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------- 82 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence 4699999999999999999999999999999999999999999999999998766543333345999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEe
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQ 165 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~ 165 (181)
+ +....+++.-+...+ +..-++.|+|+++||+.+++.+.+.++++. ++.|+|++|||++.+.. ||++++|+
T Consensus 83 --L----S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~ 156 (163)
T cd03216 83 --L----SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156 (163)
T ss_pred --c----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 1 111123332222222 334567899999999999999999998874 58999999999998865 99999999
Q ss_pred CCeEEe
Q psy10472 166 AGQIVE 171 (181)
Q Consensus 166 ~G~i~~ 171 (181)
+|++++
T Consensus 157 ~g~i~~ 162 (163)
T cd03216 157 DGRVVG 162 (163)
T ss_pred CCEEEe
Confidence 999875
No 265
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.8e-34 Score=227.92 Aligned_cols=161 Identities=26% Similarity=0.411 Sum_probs=129.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV----SSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~ 83 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ..+++.++|+||++. .|
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~---~~~~~~i~~v~q~~~~~~ 92 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC---ALRGRKIATIMQNPRSAF 92 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc---ccccceEEEEecCCcccc
Confidence 4689999999999999999999999999999999999999 999999999987532 223335999999984 34
Q ss_pred -c-ccHHHHhhcC----CCCCCHHHHHHHHHHhcccc--------------------------------ccccCCCCCCC
Q psy10472 84 -A-TSVRENIRYG----DSSVSDEQIEEAAKLANAHG--------------------------------FISEFPSGALD 125 (181)
Q Consensus 84 -~-~tv~enl~~~----~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~P~~~LD 125 (181)
+ .|+.+|+.+. ......+++.++++.+++.. ++.|+|+++||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 172 (254)
T PRK10418 93 NPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 (254)
T ss_pred CccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 4 3888887542 11122345566666666532 34567999999
Q ss_pred HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+++.+.+.|+.+. + |.|||++||+++.+.. ||++++|++|++++.
T Consensus 173 ~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 173 VVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999998864 3 8999999999999865 999999999999873
No 266
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-34 Score=221.43 Aligned_cols=144 Identities=31% Similarity=0.524 Sum_probs=118.4
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||++.+|+.|++|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------~i~~~~q~~~l~~~t~~e 84 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SIAYVSQEPWIQNGTIRE 84 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------EEEEEecCchhccCcHHH
Confidence 699999999999999999999999999999999999999999999998 299999999999889999
Q ss_pred HhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHHH
Q psy10472 90 NIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNESE 129 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~~ 129 (181)
|+.++... ..+...++++.+++. -++.|+|+++||+.++
T Consensus 85 nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 163 (204)
T cd03250 85 NILFGKPF-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163 (204)
T ss_pred HhccCCCc-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 99986432 222223332222110 1355679999999999
Q ss_pred HHHHH-HHHHh-cCCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472 130 KLVQA-ALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQ 168 (181)
Q Consensus 130 ~~i~~-~l~~~-~~~~tii~vtHd~~~~~~~d~v~~l~~G~ 168 (181)
+.+.+ +++.. .++.|||++||+++.+..||++++|++|+
T Consensus 164 ~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99988 45655 34799999999999887799999999985
No 267
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1e-34 Score=252.82 Aligned_cols=159 Identities=24% Similarity=0.289 Sum_probs=136.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+. ++|++|++.+|++|+++
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~-i~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL-FSAIFADFHLFDDLIGP 434 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh-CcEEccChhhhhhhhhc
Confidence 58999999999999999999999999999999999999999999999999998887777765 99999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHhcccc-----------------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472 90 NIRYGDSSVSDEQIEEAAKLANAHG-----------------------------------FISEFPSGALDNESEKLVQA 134 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~P~~~LD~~~~~~i~~ 134 (181)
|.. +...+++++++++.+++.+ ++.|+||++||+++++.+.+
T Consensus 435 n~~---~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~ 511 (555)
T TIGR01194 435 DEG---EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYE 511 (555)
T ss_pred ccc---cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 952 2234555666666655433 34567999999999999988
Q ss_pred HH-HHh-cCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 135 AL-ESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 135 ~l-~~~-~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
.+ +.. .+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 512 ~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 512 ELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 65 334 458999999999998888999999999999873
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=249.45 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=132.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~ 84 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+.....++.++|+||++ .+++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 468999999999999999999999999999999999998 599999999998864433222223499999996 3665
Q ss_pred -ccHHHHhhcCCC----C---CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCC
Q psy10472 85 -TSVRENIRYGDS----S---VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSG 122 (181)
Q Consensus 85 -~tv~enl~~~~~----~---~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~ 122 (181)
.|+.||+.++.. . .. .+++.++++.+++. . ++.|+||+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~ 434 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR 434 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 499999986421 0 11 12355667776653 2 35577999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+||+.+++.++++++.+. +|+|||++|||++++.. ||++++|++|+++..
T Consensus 435 ~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 435 GIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred CcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999998864 58999999999999866 999999999999863
No 269
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.8e-34 Score=228.65 Aligned_cols=164 Identities=23% Similarity=0.296 Sum_probs=128.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE-----CCCCChhhh---ccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD-----LKHLDGTWL---RGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~~---r~~~i~~v~q~~ 80 (181)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|++ +...+.... +++.++|++|++
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 468999999999999999999999999999999999999999999999976 554443321 223599999997
Q ss_pred C--Ccc-ccHHHHhhcC-----CCC--CCHHHHHHHHHHhccc-c-----------------------------ccccCC
Q psy10472 81 V--LFA-TSVRENIRYG-----DSS--VSDEQIEEAAKLANAH-G-----------------------------FISEFP 120 (181)
Q Consensus 81 ~--l~~-~tv~enl~~~-----~~~--~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P 120 (181)
. ++. .|+.+|+.+. ... ...+.+.++++.+++. . ++.|+|
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4 333 3788887531 111 1123445555555542 1 356779
Q ss_pred CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++||+.+++.+.+++++.. + +.|+|+|||+++.+.. ||++++|++|++++.
T Consensus 176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 99999999999999998753 3 8999999999999975 999999999999873
No 270
>KOG0056|consensus
Probab=100.00 E-value=1.6e-35 Score=246.59 Aligned_cols=171 Identities=46% Similarity=0.735 Sum_probs=153.4
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS 86 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t 86 (181)
+.+++|+||||++.+|+.+||+||||+||||++|+|.+++..++|.|.|||++++......+|+. ||.||||..+|+.|
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~-IGVVPQDtvLFNdT 627 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS-IGVVPQDTVLFNDT 627 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh-cCcccCcceeecce
Confidence 34789999999999999999999999999999999999999999999999999998888888876 99999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCH
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDN 126 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~ 126 (181)
+..||.|+....+.+++.++++.++..+ .+.|+.|++||.
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 9999999987777888777776554433 134557889999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
.+++.+...+.+++.++|.|+|.|.++.+-.||.|+++++|+|+| .|.++++
T Consensus 708 ~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvE-rG~HeeL 759 (790)
T KOG0056|consen 708 NTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVE-RGRHEEL 759 (790)
T ss_pred ccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEee-cCcHHHH
Confidence 999999999999999999999999999999999999999999999 6777654
No 271
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=246.23 Aligned_cols=167 Identities=31% Similarity=0.426 Sum_probs=134.3
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCC--C
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPV--L 82 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~--l 82 (181)
...+++||||++.+||+++|+|+||||||||.|+|+|+.+|++|+|.++|.+ ..++. ...|+ .+-++||+|. |
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~-~~QmvFQdp~~SL 380 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRR-RIQMVFQDPYSSL 380 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccchhhhhhh-heEEEEeCccccc
Confidence 4568999999999999999999999999999999999999999999999987 33332 23344 4899999984 4
Q ss_pred ccc-cHHHHhhcCCC---CC----CHHHHHHHHHHhcccc------------------------------ccccCCCCCC
Q psy10472 83 FAT-SVRENIRYGDS---SV----SDEQIEEAAKLANAHG------------------------------FISEFPSGAL 124 (181)
Q Consensus 83 ~~~-tv~enl~~~~~---~~----~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~L 124 (181)
-|. ||.+++..+.. .. .++++.+.++.+++.. ++.|+|+++|
T Consensus 381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaL 460 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460 (539)
T ss_pred CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcccc
Confidence 454 99999876421 11 1233555566555432 3567799999
Q ss_pred CHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 125 DNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
|+..+..+.++|+++++ |.|.|+||||+..+.. ||||++|++|+|++. ++.+
T Consensus 461 Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~ 515 (539)
T COG1123 461 DVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTE 515 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHH
Confidence 99999999999998753 8999999999999987 999999999999994 5433
No 272
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=247.21 Aligned_cols=163 Identities=19% Similarity=0.314 Sum_probs=132.8
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc-c
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA-T 85 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~-~ 85 (181)
.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.....++.+||+||++ .+++ .
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 46999999999999999999999999999999999999999999999999876543322223499999996 4565 5
Q ss_pred cHHHHhhcCCC----C----CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCC
Q psy10472 86 SVRENIRYGDS----S----VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGA 123 (181)
Q Consensus 86 tv~enl~~~~~----~----~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~ 123 (181)
|+.+|+.++.. . .. .+++.++++.+++. . ++.|+||++
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 99999986421 0 11 22355667776663 2 355779999
Q ss_pred CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
||+.+++.+.++|+++. +|.|||++|||++++.. ||++++|++|+++..
T Consensus 426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999998874 58999999999999866 999999999999863
No 273
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=247.60 Aligned_cols=163 Identities=20% Similarity=0.294 Sum_probs=133.0
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC---Ccc-c
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV---LFA-T 85 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~---l~~-~ 85 (181)
.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.....++.++|+||++. +|+ .
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 489999999999999999999999999999999999999999999999988644333332335999999973 665 5
Q ss_pred cHHHHhhcCCCC---------CC---HHHHHHHHHHhccc-c-----------------------------ccccCCCCC
Q psy10472 86 SVRENIRYGDSS---------VS---DEQIEEAAKLANAH-G-----------------------------FISEFPSGA 123 (181)
Q Consensus 86 tv~enl~~~~~~---------~~---~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~ 123 (181)
|+.||+.++... .. .+.+.++++.+++. . ++.|+||++
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 999999874210 01 12355677777662 2 355779999
Q ss_pred CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
||+.+++.++++|.++. +|.|||+||||++++.. ||++++|++|+++..
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999998864 58999999999999965 999999999999874
No 274
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-35 Score=218.86 Aligned_cols=171 Identities=26% Similarity=0.470 Sum_probs=146.0
Q ss_pred ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
..+.+.+++++|++|++|.+++++|||||||||||.++++|+++++|+|+++|.++...+...+.++ ++.+-|+..+-.
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~-lSILkQ~N~i~~ 88 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK-LSILKQENHINS 88 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH-HHHHHhhchhhh
Confidence 3455779999999999999999999999999999999999999999999999999999888887765 899999887765
Q ss_pred c-cHHHHhhcCCCCC--------CHHHHHHHHHHhccccc-----------------------------cccCCCCCCCH
Q psy10472 85 T-SVRENIRYGDSSV--------SDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDN 126 (181)
Q Consensus 85 ~-tv~enl~~~~~~~--------~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~ 126 (181)
. ||+|-+.||+..+ ++..+.++++.+++.++ +.++|.++||.
T Consensus 89 rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDm 168 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168 (252)
T ss_pred eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccch
Confidence 4 9999999985322 24456778877765542 44679999999
Q ss_pred HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.....+++.++++. + |+||++|-||.+++.. +|+|+-|++|+++. .++++
T Consensus 169 kHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~-~G~~~ 221 (252)
T COG4604 169 KHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK-QGSPD 221 (252)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe-cCCHH
Confidence 99999999999875 3 9999999999999965 99999999999998 45544
No 275
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-34 Score=222.36 Aligned_cols=154 Identities=20% Similarity=0.323 Sum_probs=126.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++ .++|++|++.+++. |+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQ-DLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhh-heEEeCCccccCcCCcH
Confidence 46899999999999999999999999999999999999999999999999886543 23343 49999999988874 99
Q ss_pred HHHhhcCCCC---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 88 RENIRYGDSS---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 88 ~enl~~~~~~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
.||+.++... ...++++++++.+++.. ++.|+|+++||+.+++.+.++
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 171 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 9999875321 22345566666665532 355779999999999999999
Q ss_pred HHHhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472 136 LESAC-KGRTVLMIAHRLSTVQN-ADLIVVL 164 (181)
Q Consensus 136 l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l 164 (181)
|+++. ++.|+|++||+++++.. .+|++++
T Consensus 172 l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 172 LAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 98864 58899999999999966 5677766
No 276
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-34 Score=218.38 Aligned_cols=163 Identities=23% Similarity=0.337 Sum_probs=126.6
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
+.+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.... ...++ .++|+||++.+|
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~-~i~~~~q~~~~~ 95 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPG-EIIYVSEEDVHF 95 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcc-eEEEEecccccC
Confidence 34679999999999999999999999999999999999999 89999999999886543 23333 599999999888
Q ss_pred cc-cHHHHhhcCCCC--------CC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEE
Q psy10472 84 AT-SVRENIRYGDSS--------VS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMI 148 (181)
Q Consensus 84 ~~-tv~enl~~~~~~--------~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~v 148 (181)
+. ||+||+.++... .+ .+++.-+...+ ...-++.|+|+++||+.+++.++++++++. + +.|+|++
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 96 PTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175 (202)
T ss_pred CCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 75 999999875210 11 11222222222 233467899999999999999999999864 3 5666665
Q ss_pred -ecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 149 -AHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 149 -tHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+|+.+.+.. ||++++|++|++++
T Consensus 176 ~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 176 LYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred EcCCHHHHHHhCCeEEEEECCEEEe
Confidence 455677654 99999999999876
No 277
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2e-34 Score=271.45 Aligned_cols=158 Identities=39% Similarity=0.667 Sum_probs=135.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE-CCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI-SGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i-~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++ +|.++..++..++|++ ||||+|++.+|+.|+
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~-Ig~V~Q~~~LF~~TI 476 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK-IGVVSQDPLLFSNSI 476 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh-ccEecccccchhccH
Confidence 46999999999999999999999999999999999999999999999 5688887777777765 999999999999999
Q ss_pred HHHhhcCCC---------------------------------------------------------CCCHHHHHHHHHHh
Q psy10472 88 RENIRYGDS---------------------------------------------------------SVSDEQIEEAAKLA 110 (181)
Q Consensus 88 ~enl~~~~~---------------------------------------------------------~~~~~~~~~~~~~~ 110 (181)
+|||.++.. ...++++.++++.+
T Consensus 477 ~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~ 556 (1466)
T PTZ00265 477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV 556 (1466)
T ss_pred HHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHh
Confidence 999998631 01234566666655
Q ss_pred cccc----------------------------------------ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Q psy10472 111 NAHG----------------------------------------FISEFPSGALDNESEKLVQAALESAC--KGRTVLMI 148 (181)
Q Consensus 111 ~~~~----------------------------------------~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~v 148 (181)
++.+ ++.|+||++||+.+++.+.+.|+++. +|+|+|+|
T Consensus 557 ~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiI 636 (1466)
T PTZ00265 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636 (1466)
T ss_pred CcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 4432 34567999999999999999998874 48999999
Q ss_pred ecCchhhhcCCeEEEEeCC
Q psy10472 149 AHRLSTVQNADLIVVLQAG 167 (181)
Q Consensus 149 tHd~~~~~~~d~v~~l~~G 167 (181)
||+++.+..||+|++|++|
T Consensus 637 sHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 637 AHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred eCCHHHHHhCCEEEEEeCC
Confidence 9999999889999999986
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-34 Score=247.85 Aligned_cols=161 Identities=21% Similarity=0.227 Sum_probs=130.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC--c---
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL--F--- 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l--~--- 83 (181)
+++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...+....++ .++|+||++.+ +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK-LVSDEWQRNNTDMLSPG 94 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH-HhceeccCcchhhcccc
Confidence 46999999999999999999999999999999999999999999999998775544444444 49999998642 1
Q ss_pred ----cccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 84 ----ATSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 84 ----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
..|+.+|+.++. ...+++.++++.+++.. ++.|+||++||+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 172 (490)
T PRK10938 95 EDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172 (490)
T ss_pred hhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 348888876531 12334555555555432 4567899999999999
Q ss_pred HHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 131 LVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.+.++|++++ +|+|||++|||++.+.. ||++++|++|+++..
T Consensus 173 ~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 173 QLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999998864 48999999999999866 999999999999873
No 279
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=255.36 Aligned_cols=163 Identities=25% Similarity=0.371 Sum_probs=132.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC----------CCChh---hhccCcEEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK----------HLDGT---WLRGNVIGL 75 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~----------~~~~~---~~r~~~i~~ 75 (181)
.++|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+.. .++++.|||
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 36999999999999999999999999999999999999999999999997552 11211 233335999
Q ss_pred EccCC--CCccc-cHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-------------------------------
Q psy10472 76 INQEP--VLFAT-SVRENIRYGDS---SVS----DEQIEEAAKLANAHG------------------------------- 114 (181)
Q Consensus 76 v~q~~--~l~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~------------------------------- 114 (181)
|||++ .+++. ||.||+.++.. ... .+++.++++.+++..
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 99998 57764 99999987421 111 234566777777631
Q ss_pred -ccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 115 -FISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 115 -~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++.|+||++||+.+++.+.++++++. + |+|||+||||++.+.. ||||++|++|++++
T Consensus 189 lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 35577999999999999999999874 4 8999999999999865 99999999999987
No 280
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.4e-34 Score=246.81 Aligned_cols=163 Identities=17% Similarity=0.305 Sum_probs=132.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCCCh-hhhccCcEEEEccCC---CCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHLDG-TWLRGNVIGLINQEP---VLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~---~l~ 83 (181)
+.+|+++||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++...+. ...++ .++|+||++ .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA-GIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC-CCEEcCcchhhCCcC
Confidence 4689999999999999999999999999999999999995 89999999998864433 23344 599999996 467
Q ss_pred cc-cHHHHhhcCCC-------CCC----HHHHHHHHHHhcccc------------------------------ccccCCC
Q psy10472 84 AT-SVRENIRYGDS-------SVS----DEQIEEAAKLANAHG------------------------------FISEFPS 121 (181)
Q Consensus 84 ~~-tv~enl~~~~~-------~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~ 121 (181)
+. |+++|+.++.. ... .+++.++++.+++.. ++.|+||
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 64 99999987421 011 123556677666531 3457799
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.++++++.+. +|.|||+||||++++.. ||++++|++|+++..
T Consensus 432 ~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 432 RGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred CCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999998864 58999999999999965 999999999999863
No 281
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.2e-34 Score=219.21 Aligned_cols=146 Identities=28% Similarity=0.461 Sum_probs=115.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCC--CCcc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP--VLFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~--~l~~ 84 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....+++ .++|+||++ .+|+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQ-RVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHh-hEEEEecChhhcccc
Confidence 5699999999999999999999999999999999999999999999999987421 1123343 499999998 3566
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.|++||+.++.. ... .+++.++++.+++.. ++.|+|+++||+.++
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 799999987421 111 123455566555433 355779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhh
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTV 155 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~ 155 (181)
+.+.++|+++. +|+|||++||+++++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 99999998864 589999999998753
No 282
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.9e-34 Score=248.80 Aligned_cols=162 Identities=28% Similarity=0.426 Sum_probs=131.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCC--CCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEP--VLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~--~l~ 83 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|++ |++|+|+++|+++...+... +++ .++|+||++ .++
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRH-RIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhh-ceEEEEeCchhhcC
Confidence 46999999999999999999999999999999999998 48999999999886554322 233 499999997 366
Q ss_pred cc-cHHHHhhcCCC----CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCC
Q psy10472 84 AT-SVRENIRYGDS----SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGAL 124 (181)
Q Consensus 84 ~~-tv~enl~~~~~----~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~L 124 (181)
+. ||.||+.++.. ... .+++.++++.+++. . ++.|+||++|
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 456 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCcccc
Confidence 64 99999987421 011 23455666666653 1 3557799999
Q ss_pred CHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 125 DNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+.+++.++++|++++ + |+|||+||||++++.. ||++++|++|++++.
T Consensus 457 D~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 457 DKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred CHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 9999999999998864 3 8999999999999865 999999999999873
No 283
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.3e-33 Score=211.00 Aligned_cols=146 Identities=28% Similarity=0.403 Sum_probs=119.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|++|++.+++.|+.
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~~~tv~ 81 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLPLGTLR 81 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCccccccHH
Confidence 46999999999999999999999999999999999999999999999872 249999999988877999
Q ss_pred HHhhcC-CCCCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEE
Q psy10472 89 ENIRYG-DSSVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV 163 (181)
Q Consensus 89 enl~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~ 163 (181)
||+.++ ....+ .+++.-+...+ +..-++.|+|+++||+.+++.+.++++++ +.|+|++||+++....||++++
T Consensus 82 ~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~ 159 (166)
T cd03223 82 EQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLD 159 (166)
T ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEE
Confidence 999873 22222 22222222222 33456789999999999999999999876 5899999999987767999999
Q ss_pred EeCCe
Q psy10472 164 LQAGQ 168 (181)
Q Consensus 164 l~~G~ 168 (181)
|+++.
T Consensus 160 l~~~~ 164 (166)
T cd03223 160 LDGEG 164 (166)
T ss_pred EcCCC
Confidence 98763
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-34 Score=247.06 Aligned_cols=164 Identities=30% Similarity=0.443 Sum_probs=132.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCChh---hhccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDGT---WLRGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~ 80 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+.. .++++.+||+||++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 4699999999999999999999999999999999999987 799999999998765432 23334599999998
Q ss_pred C--Cccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc--------------------------------cccc
Q psy10472 81 V--LFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG--------------------------------FISE 118 (181)
Q Consensus 81 ~--l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~--------------------------------~~~~ 118 (181)
. +++. |+.+|+.+.. .... .+++.++++.+++.. ++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5 4554 8999886421 1111 234566777666632 3557
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 119 FPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 119 ~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+||++||+.+++.++++++++. + |+|||+||||++.+.. ||||++|++|++++.
T Consensus 182 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 7999999999999999998864 3 8999999999999865 999999999999873
No 285
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6e-34 Score=245.85 Aligned_cols=162 Identities=17% Similarity=0.311 Sum_probs=131.6
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCccc-c
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFAT-S 86 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~-t 86 (181)
+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++...+.....++.++|+||++ .+|+. |
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 6899999999999999999999999999999999999999999999999876554433333599999985 36664 9
Q ss_pred HHHHhhcCC----C---CC--CHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHH
Q psy10472 87 VRENIRYGD----S---SV--SDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 87 v~enl~~~~----~---~~--~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~ 127 (181)
+.+|+.... . .. ..+.++++++.+++. . ++.|+||++||+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 999985320 0 01 122345666766664 2 3557799999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++.+.++|+++. +|.|||+||||++++.. ||++++|++|+++..
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999998864 58999999999999976 999999999999864
No 286
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.3e-34 Score=220.64 Aligned_cols=154 Identities=21% Similarity=0.331 Sum_probs=125.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+ +.++|++|++.+++. |+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~-~~i~~~~q~~~~~~~~t~ 99 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRS-RFMAYLGHLPGLKADLST 99 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhh-hceEEeecCcccccCCcH
Confidence 4699999999999999999999999999999999999999999999999987542 222 349999999988875 99
Q ss_pred HHHhhcCCC---CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 88 RENIRYGDS---SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 88 ~enl~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
.||+.+... ....+.+.++++.+++.. ++.|+|+++||+.+++.+.+.
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (214)
T PRK13543 100 LENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRM 179 (214)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 999976421 112233455555554432 356779999999999999999
Q ss_pred HHHh-cCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 136 LESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 136 l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
+++. .++.|+|++|||++.+.. ||++++++.
T Consensus 180 l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 180 ISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9875 458999999999999965 999999864
No 287
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=214.57 Aligned_cols=172 Identities=26% Similarity=0.398 Sum_probs=136.5
Q ss_pred cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-------------hhhhccCc
Q psy10472 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-------------GTWLRGNV 72 (181)
Q Consensus 6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-------------~~~~r~~~ 72 (181)
.+...+|++||++.++|+++.|+|.|||||||+||||+-|..|+.|.|.++|+.+.-.. ...+|.+
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~- 94 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR- 94 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH-
Confidence 34567999999999999999999999999999999999999999999999999874211 1234544
Q ss_pred EEEEccCCCCccc-cHHHHhhcCCC----CCCHHHH---HHHHHHhcc-----------------------------ccc
Q psy10472 73 IGLINQEPVLFAT-SVRENIRYGDS----SVSDEQI---EEAAKLANA-----------------------------HGF 115 (181)
Q Consensus 73 i~~v~q~~~l~~~-tv~enl~~~~~----~~~~~~~---~~~~~~~~~-----------------------------~~~ 115 (181)
.|+|||+++|++. ||.||+..+.- ....+.+ +..+..+++ .-+
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vm 174 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVM 174 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceE
Confidence 8999999999975 99999976421 1112222 222333332 224
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchhh
Q psy10472 116 ISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 116 ~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+.|+||++|||+..-++++.+++++ +|+|+++|||.+.++.. +.+|++|++|.|.+ .++++++
T Consensus 175 LFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE-~G~P~qv 239 (256)
T COG4598 175 LFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE-EGPPEQV 239 (256)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc-cCChHHH
Confidence 6678999999999999999999886 59999999999999987 99999999999987 5666543
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.3e-33 Score=223.12 Aligned_cols=167 Identities=28% Similarity=0.366 Sum_probs=127.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|+++...+....++..++|++|++.+++.
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 56999999999999999999999999999999999995 699999999999887665544443459999999877754
Q ss_pred cHHHHhhcC-------CCC--CC----HHHHHHHHHHhccc-------------------------------cccccCCC
Q psy10472 86 SVRENIRYG-------DSS--VS----DEQIEEAAKLANAH-------------------------------GFISEFPS 121 (181)
Q Consensus 86 tv~enl~~~-------~~~--~~----~~~~~~~~~~~~~~-------------------------------~~~~~~P~ 121 (181)
+..+++.+. ... .. .+.+.++++.+++. -++.|+||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt 173 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 554443221 000 01 11223333333331 13567799
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~ 176 (181)
++||+.+++.+.+.++++. +++|||++|||++.+.. ||++++|++|++++ .++.
T Consensus 174 ~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~-~g~~ 230 (248)
T PRK09580 174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDF 230 (248)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE-eCCH
Confidence 9999999999999998875 47999999999999865 89999999999987 3443
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.9e-34 Score=219.07 Aligned_cols=152 Identities=22% Similarity=0.324 Sum_probs=123.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...+++ .++|++|++.+++ .|+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-LCTYQK-QLCFVGHRSGINPYLTL 91 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-HHHHHh-heEEeccccccCcCCCH
Confidence 5699999999999999999999999999999999999999999999999987542 233444 4999999998876 599
Q ss_pred HHHhhcCCC-CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472 88 RENIRYGDS-SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 88 ~enl~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
.+|+.++.. ......+.++++.+++.. ++.|+|+++||+.+++.+.+.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~ 171 (200)
T PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171 (200)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence 999987531 112234555555544322 35677999999999999999998
Q ss_pred Hhc-CCcEEEEEecCchhhhcCCeEE
Q psy10472 138 SAC-KGRTVLMIAHRLSTVQNADLIV 162 (181)
Q Consensus 138 ~~~-~~~tii~vtHd~~~~~~~d~v~ 162 (181)
++. ++.|+|++||+.+.+..||.-.
T Consensus 172 ~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 172 EHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHHcCCEEEEEeCCchhccccchhh
Confidence 864 5899999999999998888654
No 290
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.1e-34 Score=222.29 Aligned_cols=156 Identities=26% Similarity=0.334 Sum_probs=122.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC--CE--ECCCCChhh---hccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GV--DLKHLDGTW---LRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~--g~--~i~~~~~~~---~r~~~i~~v~q~~~ 81 (181)
.++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+... .+++.++|+||++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 369999999999999999999999999999999999999999999998 43 444443322 23345999999998
Q ss_pred Cccc-cHHHHhhcCC--CCCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCC
Q psy10472 82 LFAT-SVRENIRYGD--SSVS----DEQIEEAAKLANAHG------------------------------FISEFPSGAL 124 (181)
Q Consensus 82 l~~~-tv~enl~~~~--~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~L 124 (181)
+++. |+.||+.+.. .... .+++.++++.+++.. ++.|+|+++|
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 8875 9999997631 1111 233455566555432 3456799999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472 125 DNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL 164 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l 164 (181)
|+.+++.+.+.++++. +|+|+|++||+++.+.. ||+++.+
T Consensus 181 D~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 181 DAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999998864 48999999999998864 9999876
No 291
>KOG0054|consensus
Probab=100.00 E-value=5.2e-34 Score=262.33 Aligned_cols=173 Identities=35% Similarity=0.531 Sum_probs=155.0
Q ss_pred CCccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 3 ~~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l 82 (181)
++......||++|||+|++||.+||+|+.|||||||+.+|.++.+|.+|+|.|||.|+.++...++|++ ++.+||+|.+
T Consensus 1147 RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr-lsIIPQdPvL 1225 (1381)
T KOG0054|consen 1147 RYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR-LSIIPQDPVL 1225 (1381)
T ss_pred EeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc-CeeeCCCCce
Confidence 344455679999999999999999999999999999999999999999999999999999999999987 9999999999
Q ss_pred ccccHHHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCC
Q psy10472 83 FATSVRENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSG 122 (181)
Q Consensus 83 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~ 122 (181)
|++|+|.|+.-. ...++++++++++.+++.+. +.|+.|+
T Consensus 1226 FsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATA 1304 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATA 1304 (1381)
T ss_pred ecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccc
Confidence 999999999755 34678889999988776553 3455888
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++|+++-..+.+.|++..+++|||.|.|+++.+-.||||+||++|+++| .+.|..
T Consensus 1305 sVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E-fdsP~~ 1359 (1381)
T KOG0054|consen 1305 SVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE-FDSPAE 1359 (1381)
T ss_pred cCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee-cCChHH
Confidence 9999999999999999888999999999999999999999999999999 455543
No 292
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-34 Score=213.19 Aligned_cols=160 Identities=29% Similarity=0.475 Sum_probs=130.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
..+|+|+|++|.+||+++++|||||||||||++++|+.+|+.|+|.+||..+..-. . . -|+|||++.++|. |+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-a----e-rgvVFQ~~~LlPWl~~ 91 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-A----E-RGVVFQNEALLPWLNV 91 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-c----c-ceeEeccCccchhhHH
Confidence 45999999999999999999999999999999999999999999999999886532 1 1 3899999999997 99
Q ss_pred HHHhhcCCCC--CCH-H---HHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VSD-E---QIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~~-~---~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.||++|+... ..+ + ...+.+..+++.+ ++.|+|+++||.-+++.+
T Consensus 92 ~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~m 171 (259)
T COG4525 92 IDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171 (259)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHH
Confidence 9999998432 122 2 2233444444433 356779999999999999
Q ss_pred HHHHHH-hc-CCcEEEEEecCchhhhc-CCeEEEEe--CCeEEeecC
Q psy10472 133 QAALES-AC-KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEMLG 174 (181)
Q Consensus 133 ~~~l~~-~~-~~~tii~vtHd~~~~~~-~d~v~~l~--~G~i~~~~~ 174 (181)
.+++-+ ++ .|+.+++||||.+++-. ++++++|+ .|++++...
T Consensus 172 QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 172 QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 999866 44 49999999999999866 99999997 578887543
No 293
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.3e-33 Score=220.26 Aligned_cols=148 Identities=20% Similarity=0.345 Sum_probs=120.2
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc---cccHHHHhhc
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF---ATSVRENIRY 93 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~---~~tv~enl~~ 93 (181)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..++ .++|+||++.++ +.|+.+|+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~-~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWR-HIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhC-cEEEecccccccCCCCccHHHHHHh
Confidence 578999999999999999999999999999999999999998753 2233 499999998663 3589999976
Q ss_pred CCC-------CC---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472 94 GDS-------SV---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQA 134 (181)
Q Consensus 94 ~~~-------~~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~ 134 (181)
+.. .. ..+++.++++.+++.. ++.|+|+++||+.+++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 521 01 1234556666665543 35567999999999999999
Q ss_pred HHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 135 ALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 135 ~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.++++. ++.|+|++||+++.+.. ||+++++ +|+++.
T Consensus 155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~ 192 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA 192 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 998865 58999999999998865 9999999 899987
No 294
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.4e-33 Score=224.69 Aligned_cols=151 Identities=26% Similarity=0.426 Sum_probs=121.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++.|++
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------~i~yv~q~~~l~~~tv~ 115 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------RISFSSQFSWIMPGTIK 115 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------EEEEEeCcccccccCHH
Confidence 4699999999999999999999999999999999999999999999987 18999999998888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
||+.++... .......+++.+++ .-++.|+|+++||+.+
T Consensus 116 enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~ 194 (282)
T cd03291 116 ENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194 (282)
T ss_pred HHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 999875321 11111111111110 1145677999999999
Q ss_pred HHHHHHHH-HHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCC
Q psy10472 129 EKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 129 ~~~i~~~l-~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~ 175 (181)
+..+.+.+ ..+.++.|||++||+++.+..||++++|++|+++. .++
T Consensus 195 ~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~-~g~ 241 (282)
T cd03291 195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF-YGT 241 (282)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEE-ECC
Confidence 99998754 55556899999999999987799999999999987 344
No 295
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-33 Score=222.50 Aligned_cols=149 Identities=24% Similarity=0.356 Sum_probs=122.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc---c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA---T 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~---~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. . .++|+||++.+++ .
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-----------~-~i~~v~q~~~~~~~l~~ 84 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-----------L-RIGYVPQKLYLDTTLPL 84 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-----------c-CEEEeccccccccccCh
Confidence 46999999999999999999999999999999999999999999999861 1 3999999987764 3
Q ss_pred cHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 86 SVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
|+.+|+.+.. ....+++.++++.+++.. ++.|+|+++||+.++..+++.|
T Consensus 85 ~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 163 (251)
T PRK09544 85 TVNRFLRLRP-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163 (251)
T ss_pred hHHHHHhccc-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 7888876532 123344556666555432 3567799999999999999999
Q ss_pred HHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 137 ESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 137 ~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+++. + +.|+|++||+++++.. ||++++|++ ++++
T Consensus 164 ~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 164 DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 8764 3 8999999999999865 999999965 6766
No 296
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-33 Score=268.37 Aligned_cols=166 Identities=22% Similarity=0.375 Sum_probs=138.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....|+ .+||+||++.+++. ||
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~-~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQ-SLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhh-cEEEEecCCcCCCCCCH
Confidence 569999999999999999999999999999999999999999999999999864 3334454 49999999998875 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.++.. ... +++++++++.+++.+ ++.|+||++||+.+++.+
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l 1100 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 999987521 111 234566666666543 356779999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+++|+++++|+|||++||+++++.. |||+++|++|+++. .++..
T Consensus 1101 ~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~-~Gs~~ 1145 (2272)
T TIGR01257 1101 WDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC-SGTPL 1145 (2272)
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHH
Confidence 9999988779999999999999976 99999999999987 45443
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=239.66 Aligned_cols=167 Identities=30% Similarity=0.452 Sum_probs=132.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC----cceEEECCEECCCCChh---hhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS----SGNITISGVDLKHLDGT---WLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~----~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~ 81 (181)
..+++||||+|.+||++||+|.|||||||+.++|.|++++. +|+|.++|+++..++.. .+|.+.|+|+||+|.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 35999999999999999999999999999999999999987 89999999998877754 346667999999983
Q ss_pred -Cc-c-ccHHHHhhc----CCCCCC---HHHHHHHHHHhccc-------------------------------cccccCC
Q psy10472 82 -LF-A-TSVRENIRY----GDSSVS---DEQIEEAAKLANAH-------------------------------GFISEFP 120 (181)
Q Consensus 82 -l~-~-~tv~enl~~----~~~~~~---~~~~~~~~~~~~~~-------------------------------~~~~~~P 120 (181)
.+ | .||.+.|.- ...... .+++.++++.+++. -++.|+|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 34 4 377666543 211111 12233344444332 1467889
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 121 SGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
|++||+..+.+++++|+.+. .|.++|+||||+..+.+ ||||++|++|+++|. ++.
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~-G~~ 239 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET-GPT 239 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe-cCH
Confidence 99999999999999999875 49999999999999977 999999999999994 543
No 298
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.4e-33 Score=213.25 Aligned_cols=159 Identities=30% Similarity=0.425 Sum_probs=121.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+|| ++.. -+
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~-~i~~~~q---~l~~~gl 87 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELAR-KIAYVPQ---ALELLGL 87 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHH-HHhHHHH---HHHHcCC
Confidence 46999999999999999999999999999999999999999999999999987666555554 4999999 2211 12
Q ss_pred HHHhhcCCCCCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCe
Q psy10472 88 RENIRYGDSSVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADL 160 (181)
Q Consensus 88 ~enl~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~ 160 (181)
.+.+.-.....+ .+++.-+...+ ...-++.|+||++||+.+++.+.+.+.++. + +.|+|++||+++.+.. ||+
T Consensus 88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 222111111111 22222222222 334467899999999999999999998864 3 7899999999999855 999
Q ss_pred EEEEeCCeEEe
Q psy10472 161 IVVLQAGQIVE 171 (181)
Q Consensus 161 v~~l~~G~i~~ 171 (181)
+++|++|++++
T Consensus 168 ~~~l~~g~i~~ 178 (180)
T cd03214 168 VILLKDGRIVA 178 (180)
T ss_pred EEEEECCEEEe
Confidence 99999999875
No 299
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=220.84 Aligned_cols=162 Identities=27% Similarity=0.430 Sum_probs=134.6
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhccCcEEEEccCCCCccc-cHH
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
+++|+.+...++||.|+||||||||+|+|+|+.+|++|.|.+||.-+.+... ..-+ ++||||||+..||+. ||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~-RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK-RRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhh-heeeeEeeccccccceEEe
Confidence 6788888867999999999999999999999999999999999987754321 1122 349999999999986 999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHHHHHHHHHh
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKLVQAALESA 139 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~i~~~l~~~ 139 (181)
.|+.|+..........++.+++++..+ +.|+|.++||...+.+++-.++.+
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL 174 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL 174 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH
Confidence 999999766556666777766665443 456688999999999999999987
Q ss_pred cC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 140 CK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 140 ~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+ +..|++|||.++++.. ||+|++|++|++.+ .++-+
T Consensus 175 ~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A-~g~~e 214 (352)
T COG4148 175 RDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA-SGPLE 214 (352)
T ss_pred HHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe-cCcHH
Confidence 64 7899999999999876 99999999999987 45433
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.5e-33 Score=265.94 Aligned_cols=166 Identities=16% Similarity=0.277 Sum_probs=136.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....++ .|||+||++.+++. |+
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~-~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQ-NMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhh-hEEEEeccccCCCCCCH
Confidence 469999999999999999999999999999999999999999999999999854 2233444 49999999998875 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.+... ... ++.++++++.+++.. ++.|+|+++||+.+++.+
T Consensus 2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l 2109 (2272)
T TIGR01257 2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML 2109 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 999976321 111 223445566555433 356789999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+++|+++. +|+|||++||++++++. |||+++|++|+++. .+..+
T Consensus 2110 ~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~-~Gs~q 2155 (2272)
T TIGR01257 2110 WNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC-LGTIQ 2155 (2272)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence 99998864 58999999999999976 99999999999987 45443
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-33 Score=241.90 Aligned_cols=167 Identities=22% Similarity=0.388 Sum_probs=131.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC-CEE---CCCCCh---hhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS-GVD---LKHLDG---TWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~-g~~---i~~~~~---~~~r~~~i~~v~q~~~ 81 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+. ...++ .++|+||++.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~-~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKR-YIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhh-hEEEEccCcc
Confidence 469999999999999999999999999999999999999999999996 643 222221 12333 4999999998
Q ss_pred Cccc-cHHHHhhcCCC--CC---CHHHHHHHHHHhcccc----------------------------------ccccCCC
Q psy10472 82 LFAT-SVRENIRYGDS--SV---SDEQIEEAAKLANAHG----------------------------------FISEFPS 121 (181)
Q Consensus 82 l~~~-tv~enl~~~~~--~~---~~~~~~~~~~~~~~~~----------------------------------~~~~~P~ 121 (181)
+++. |+.||+.++.. .. ..+++.++++.+++.. ++.|+||
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 8875 99999976311 11 1233455666666631 2456799
Q ss_pred CCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 122 GALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
++||+.+++.++++|+++. + |.|||+||||++++.. ||++++|++|++++ .++.+
T Consensus 456 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~g~~~ 513 (520)
T TIGR03269 456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK-IGDPE 513 (520)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence 9999999999999998864 3 8999999999999866 99999999999987 34443
No 302
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.6e-33 Score=213.90 Aligned_cols=152 Identities=22% Similarity=0.340 Sum_probs=121.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++ .++|++|++.+++ .|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHR-NILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhh-heEEeccCcccccCCcH
Confidence 56899999999999999999999999999999999999999999999999876543 23333 4999999988887 599
Q ss_pred HHHhhcCCC--CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 88 RENIRYGDS--SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 88 ~enl~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
.+|+.+... ....+.+.++++.+++.. ++.|+|+++||+.+++.+.+++
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (198)
T TIGR01189 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170 (198)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 999976421 112334566666655433 3557799999999999999999
Q ss_pred HHh-cCCcEEEEEecCchhhhcCCeEEE
Q psy10472 137 ESA-CKGRTVLMIAHRLSTVQNADLIVV 163 (181)
Q Consensus 137 ~~~-~~~~tii~vtHd~~~~~~~d~v~~ 163 (181)
.++ .+|.|+|++||+...+ .|++++.
T Consensus 171 ~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 171 RAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred HHHHhCCCEEEEEEcccccc-cceEEee
Confidence 886 4589999999998543 3566654
No 303
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.5e-33 Score=242.47 Aligned_cols=162 Identities=27% Similarity=0.459 Sum_probs=127.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEEC-----------------------CEECC--
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITIS-----------------------GVDLK-- 61 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~-----------------------g~~i~-- 61 (181)
+++|+++||+|.+||+++|+||||||||||+|+|+|++ +|++|+|.++ |.++.
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999997 7999999997 22221
Q ss_pred -----CCCh---hhhccCcEEEEccC-CCCccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------
Q psy10472 62 -----HLDG---TWLRGNVIGLINQE-PVLFAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG----------- 114 (181)
Q Consensus 62 -----~~~~---~~~r~~~i~~v~q~-~~l~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~----------- 114 (181)
..+. ..+++ .++|+||+ +.+|+. |++||+.++.. ... .+++.++++.+++..
T Consensus 93 ~~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRK-RIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred chhhhccCHHHHHHhhh-cEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 1111 12333 49999997 567764 99999987421 111 234455666665533
Q ss_pred ------------------ccccCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 115 ------------------FISEFPSGALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 115 ------------------~~~~~P~~~LD~~~~~~i~~~l~~~-~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++.|+||++||+.+++.+.++|+++ ++ |+|||+||||++.+.. ||++++|++|+++.
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence 3567799999999999999999886 33 8999999999999865 99999999999986
No 304
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.4e-33 Score=213.96 Aligned_cols=153 Identities=18% Similarity=0.335 Sum_probs=124.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . . .++ .++|++|++.+++ .|+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~-~~~-~~~~~~~~~~~~~~~tv 90 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-D-VAE-ACHYLGHRNAMKPALTV 90 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-h-hHh-hcEEecCCCcCCCCCcH
Confidence 458999999999999999999999999999999999999999999999988642 1 1 343 4899999887765 599
Q ss_pred HHHhhcCCC--CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 88 RENIRYGDS--SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 88 ~enl~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
.+|+.+... ....+.+.++++.+++.. ++.|+|+++||+.+++.+++.|
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 91 AENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170 (207)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 999976421 122344566666655432 3557799999999999999999
Q ss_pred HHh-cCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472 137 ESA-CKGRTVLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 137 ~~~-~~~~tii~vtHd~~~~~~~d~v~~l~~ 166 (181)
+++ .++.|+|++||+++++.. |+++.++.
T Consensus 171 ~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 171 RAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred HHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 875 458999999999999877 99988854
No 305
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=236.05 Aligned_cols=164 Identities=16% Similarity=0.306 Sum_probs=128.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.....++.++|+||++ .+|+.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 358999999999999999999999999999999999999999999999999876554333234599999985 35653
Q ss_pred -cHHHH-----hhcCCC--C-CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCC
Q psy10472 86 -SVREN-----IRYGDS--S-VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSG 122 (181)
Q Consensus 86 -tv~en-----l~~~~~--~-~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~ 122 (181)
|+.+| +.+... . .. .+.+.++++.+++. . ++.|+||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 76665 332111 0 11 12334555555442 1 35677999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+||+.+++.++++++.+. +|.|||++|||++++.. ||++++|++|+++..
T Consensus 421 gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 421 GIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred ccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999998864 58999999999999865 999999999999853
No 306
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8.6e-33 Score=215.71 Aligned_cols=151 Identities=27% Similarity=0.421 Sum_probs=118.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-ccc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~t 86 (181)
.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . . ...++ ..|
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~---~-----~~~~~~~~t 100 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G---L-----GGGFNPELT 100 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c---c-----cccCCCCCc
Confidence 36799999999999999999999999999999999999999999999999875311 0 1 11223 359
Q ss_pred HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
+.||+.++.. ... .+++.++++.+++.. ++.|+|+++||+.+++.
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~ 180 (224)
T cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 9999876421 111 122344555444322 35677999999999999
Q ss_pred HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.+.+.++. ++.|||++||+++.+.. ||++++|++|++++
T Consensus 181 ~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 181 CQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999998764 47999999999999865 99999999999876
No 307
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=243.24 Aligned_cols=164 Identities=30% Similarity=0.452 Sum_probs=135.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh---ccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ +++.++|+||++.+|+.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 468999999999999999999999999999999999999999999999999887665432 33459999999999975
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
|+.||+.+... ... .++..++++.+++.. ++.|+|+++||+.++
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 99999986321 111 223345555554432 355779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+.+.++++++. ++.|+|++||+++.+..||++++|++|++++.
T Consensus 181 ~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN 224 (648)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence 99999998865 58999999999998877999999999999874
No 308
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=8.9e-33 Score=244.15 Aligned_cols=164 Identities=25% Similarity=0.363 Sum_probs=133.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC--cceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~--~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~ 85 (181)
.+++|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+||+++.. ..++ .++||+|++.+++.
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~-~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILK-RTGFVTQDDILYPH 154 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhcc-ceEEECcccccCCc
Confidence 467999999999999999999999999999999999999885 8999999998642 2333 49999999999875
Q ss_pred -cHHHHhhcCC----C-CCCH----HHHHHHHHHhcccc----------------------------------ccccCCC
Q psy10472 86 -SVRENIRYGD----S-SVSD----EQIEEAAKLANAHG----------------------------------FISEFPS 121 (181)
Q Consensus 86 -tv~enl~~~~----~-~~~~----~~~~~~~~~~~~~~----------------------------------~~~~~P~ 121 (181)
||+||+.+.. . .... ++++++++.+++.+ ++.|+||
T Consensus 155 lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 9999998742 1 1122 23456666666532 2446799
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hh-hcCCeEEEEeCCeEEeecCCch
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~-~~-~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
++||+.++..+.+.+++++ +|+|||++||+++ .+ ..||++++|++|+++. .++.+
T Consensus 235 sgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~-~G~~~ 292 (659)
T PLN03211 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF-FGKGS 292 (659)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE-ECCHH
Confidence 9999999999999999875 5899999999998 35 4599999999999987 45443
No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-32 Score=217.27 Aligned_cols=153 Identities=17% Similarity=0.286 Sum_probs=121.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|++.+++ .|+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--------------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--------------VSVIAISAGLSGQLTG 102 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--------------EeEEecccCCCCCCcH
Confidence 46899999999999999999999999999999999999999999999984 346677766665 499
Q ss_pred HHHhhcCC--CCCCHHH----HHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGD--SSVSDEQ----IEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~--~~~~~~~----~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.+|+.++. .....+. +..+++.+++.. ++.|+|+++||+.+++.+
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l 182 (264)
T PRK13546 103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC 182 (264)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 99997531 1111221 223344333222 356779999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.+.++. ++.|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus 183 ~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~-~g~~ 227 (264)
T PRK13546 183 LDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD-YGEL 227 (264)
T ss_pred HHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE-eCCH
Confidence 99998764 58999999999999866 99999999999987 3443
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=236.97 Aligned_cols=154 Identities=18% Similarity=0.379 Sum_probs=124.3
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
.+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. ..++|++|++.+++. |
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN------------ERLGKLRQDQFAFEEFT 80 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEeccCCcCCCCc
Confidence 356999999999999999999999999999999999999999999999872 138999999988765 9
Q ss_pred HHHHhhcCCCC--------------------------------------CCHHHHHHHHHHhcccc--------------
Q psy10472 87 VRENIRYGDSS--------------------------------------VSDEQIEEAAKLANAHG-------------- 114 (181)
Q Consensus 87 v~enl~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~-------------- 114 (181)
+.||+.++... ....++.++++.+++..
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 99998764210 00123445555554421
Q ss_pred ----------------ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 115 ----------------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 115 ----------------~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
++.|+||++||+.+++.+.++|.+ .+.|||+||||++.+.. ||++++|++|+++.+.+.
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~ 236 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGN 236 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCC
Confidence 355779999999999999999864 47899999999999866 999999999999532443
No 311
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-32 Score=208.19 Aligned_cols=167 Identities=29% Similarity=0.377 Sum_probs=138.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+.+|++|||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|++|..+++.+..+..+.+.||.|.-+++
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 58999999999999999999999999999999999984 789999999999999999887766779999999998988
Q ss_pred cHHHHhhcCCCC---C------CHHHHHHHHHHhcccc-------------------------------ccccCCCCCCC
Q psy10472 86 SVRENIRYGDSS---V------SDEQIEEAAKLANAHG-------------------------------FISEFPSGALD 125 (181)
Q Consensus 86 tv~enl~~~~~~---~------~~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~LD 125 (181)
++.+.+..+... . -..+++++++.+++.. .+.|+|-|+||
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 888888654211 0 1223444454444332 35577999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472 126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~ 176 (181)
..+-+.+.+.++.++ ++.++++|||..+.+.+ .|+|.+|-+|+|+. .+.+
T Consensus 177 Idalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~-sG~~ 229 (251)
T COG0396 177 IDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK-SGDP 229 (251)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe-cCCH
Confidence 999999999999876 59999999999999876 59999999999998 4443
No 312
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.3e-32 Score=235.91 Aligned_cols=153 Identities=29% Similarity=0.386 Sum_probs=124.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..+||+||++.+++. |+
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~tv 87 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------------IKVGYLPQEPQLDPEKTV 87 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEecCCCCCCCCcH
Confidence 56999999999999999999999999999999999999999999998741 239999999988875 99
Q ss_pred HHHhhcCCC----------------CCC--------------------------HHHHHHHHHHhcccc-----------
Q psy10472 88 RENIRYGDS----------------SVS--------------------------DEQIEEAAKLANAHG----------- 114 (181)
Q Consensus 88 ~enl~~~~~----------------~~~--------------------------~~~~~~~~~~~~~~~----------- 114 (181)
.||+.++.. ... ..++.++++.+++..
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG 167 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG 167 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence 999976421 000 122334444444321
Q ss_pred -----------------ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 115 -----------------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 115 -----------------~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
++.|+||++||+.++..+.+.|+++. .|||+||||++++.. ||+|++|++|+++.+.+.
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~ 244 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN 244 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCC
Confidence 35677999999999999999998764 599999999999976 999999999998743444
No 313
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.8e-32 Score=222.15 Aligned_cols=143 Identities=27% Similarity=0.473 Sum_probs=117.4
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhcCCC--CCC----
Q psy10472 27 IVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYGDS--SVS---- 99 (181)
Q Consensus 27 liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~~~~--~~~---- 99 (181)
|+|||||||||||++|+|+++|++|+|.++|+++...+.. ++ .++|+||++.+|+. |+.||+.|+.. ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~--~~-~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LR-HINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC-CEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 6899999999999999999999999999999998765432 33 49999999999975 99999998632 111
Q ss_pred HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEE
Q psy10472 100 DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESAC-K-GRTVLMI 148 (181)
Q Consensus 100 ~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~v 148 (181)
.+++.++++.+++.. ++.|+|+++||+.+++.+.+.|+++. + |+|+|+|
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 234556666665543 35577999999999999999998864 3 8999999
Q ss_pred ecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 149 AHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 149 tHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|||++++.. ||++++|++|+++..
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999865 999999999999873
No 314
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-33 Score=226.70 Aligned_cols=170 Identities=48% Similarity=0.747 Sum_probs=152.8
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
.+++|+++||++++|+.++++||||+||||++++|.+++++++|.|.++|+++.......+|+. ||.|||+..||+.|+
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a-Ig~VPQDtvLFNDti 353 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA-IGIVPQDTVLFNDTI 353 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH-hCcCcccceehhhhH
Confidence 3679999999999999999999999999999999999999999999999999988877778876 999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhcccccc----------------------------------------ccCCCCCCCHH
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHGFI----------------------------------------SEFPSGALDNE 127 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~P~~~LD~~ 127 (181)
..|+.++......+++..+++.+.+.+++ .|+.|++||..
T Consensus 354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 99999998777888887777766554433 34456899999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+++.+...|+....|.|.++|.|.++.+..||.|++|++|+|+| .|+++++
T Consensus 434 te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e-rg~h~~l 484 (497)
T COG5265 434 TEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE-RGTHEEL 484 (497)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe-cCcHHHH
Confidence 99999999999989999999999999999999999999999999 6777654
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.1e-31 Score=232.84 Aligned_cols=155 Identities=22% Similarity=0.321 Sum_probs=126.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA-T 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~-~ 85 (181)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+||++|++. +++ .
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------ANIGYYAQDHAYDFENDL 399 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------------eEEEEEcccccccCCCCC
Confidence 46899999999999999999999999999999999999999999999872 23999999974 444 4
Q ss_pred cHHHHhhcCC-CCCCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472 86 SVRENIRYGD-SSVSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQA 134 (181)
Q Consensus 86 tv~enl~~~~-~~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~ 134 (181)
|+.+|+.+.. .....+++.++++.+++. . ++.|+||++||+.+++.+.+
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 9999986532 122344556666666542 1 35677999999999999999
Q ss_pred HHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 135 ALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 135 ~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.++.+ +.|||+||||++++.. ||++++|++|+++...++..
T Consensus 480 ~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 480 ALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred HHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHH
Confidence 99876 3599999999999876 99999999999984345443
No 316
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=4.4e-32 Score=203.12 Aligned_cols=164 Identities=21% Similarity=0.389 Sum_probs=140.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC-EECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-VDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g-~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
-.+|+++||++.+||.-+|+|||||||||++.+|+|-.+|+.|+|+++| .+++.++...+.+..||-=||.|..|.. |
T Consensus 18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~lt 97 (249)
T COG4674 18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLT 97 (249)
T ss_pred eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhcc
Confidence 4689999999999999999999999999999999999999999999999 8999998877777789999999999976 9
Q ss_pred HHHHhhcCCCC--------------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCC
Q psy10472 87 VRENIRYGDSS--------------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGA 123 (181)
Q Consensus 87 v~enl~~~~~~--------------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~ 123 (181)
|+||+.++... ....++++++...++.+ ++.|+|.++
T Consensus 98 V~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAG 177 (249)
T COG4674 98 VRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAG 177 (249)
T ss_pred HHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCC
Confidence 99999765211 12335666665444322 356779999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+-.+.....-++++.++..++|++|.||++++.. |++|-+|+.|.+...
T Consensus 178 MTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 178 MTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred CcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence 9999999999999999989999999999999976 999999999999763
No 317
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=7.3e-32 Score=206.24 Aligned_cols=146 Identities=21% Similarity=0.317 Sum_probs=115.9
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHHH
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVREN 90 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~en 90 (181)
+.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... + +.++|++|++.++ ..|+.||
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~-~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----K-PYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----h-hhEEeccCCcCCCccCCHHHH
Confidence 44599999999999999999999999999999999999999999998875432 2 2489999988665 4699999
Q ss_pred hhcCCCC-CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHh-
Q psy10472 91 IRYGDSS-VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESA- 139 (181)
Q Consensus 91 l~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~- 139 (181)
+.+.... ...+++.++++.+++.. ++.|+|+++||+.+++.+.++++..
T Consensus 91 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 170 (195)
T PRK13541 91 LKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170 (195)
T ss_pred HHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9875321 12334455555544322 3567799999999999999999754
Q ss_pred cCCcEEEEEecCchhhhcCCeEE
Q psy10472 140 CKGRTVLMIAHRLSTVQNADLIV 162 (181)
Q Consensus 140 ~~~~tii~vtHd~~~~~~~d~v~ 162 (181)
.++.|+|++||+++.+..||.+.
T Consensus 171 ~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 171 NSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred hCCCEEEEEeCCccccchhheec
Confidence 45899999999999998887653
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=99.98 E-value=1.3e-31 Score=254.48 Aligned_cols=153 Identities=28% Similarity=0.505 Sum_probs=130.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-ceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-GNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
+++|+|+||+|++|++++|+||||||||||+++|+|.++|++ |+|.+.+ .|+||+|+|++|++||
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~--------------~Iayv~Q~p~LfngTI 695 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG--------------TVAYVPQVSWIFNATV 695 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC--------------eEEEEcCccccCCCCH
Confidence 468999999999999999999999999999999999999999 8997532 3999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
+|||.|+.+ .++++.+++++.+++.. ++.|+|+++||++
T Consensus 696 reNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~ 774 (1622)
T PLN03130 696 RDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAH 774 (1622)
T ss_pred HHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHH
Confidence 999999864 46777788877665433 2446699999999
Q ss_pred HHHHHH-HHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 128 SEKLVQ-AALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 128 ~~~~i~-~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
+.+.+. ++++...+++|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus 775 ~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e-~Gt~~ 824 (1622)
T PLN03130 775 VGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKE-EGTYE 824 (1622)
T ss_pred HHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEE-eCCHH
Confidence 887765 45665556899999999999998899999999999998 45544
No 319
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=1.8e-31 Score=232.46 Aligned_cols=154 Identities=28% Similarity=0.372 Sum_probs=122.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..|||+||++.+++. |+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~tv 85 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------------IKVGYLPQEPQLDPTKTV 85 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEeccCCCCCCCcH
Confidence 56999999999999999999999999999999999999999999998751 239999999988865 99
Q ss_pred HHHhhcCCCC-----------------CCH-------------------------HHHHHHHHHhccc------------
Q psy10472 88 RENIRYGDSS-----------------VSD-------------------------EQIEEAAKLANAH------------ 113 (181)
Q Consensus 88 ~enl~~~~~~-----------------~~~-------------------------~~~~~~~~~~~~~------------ 113 (181)
.||+.++... ... .++.++++.+++.
T Consensus 86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG 165 (552)
T TIGR03719 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGG 165 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHH
Confidence 9999874210 001 1122233333321
Q ss_pred ----------------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 114 ----------------GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 114 ----------------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
-++.|+||++||+.+++.+.+.|+++. .|||+||||++.+.. ||++++|++|+++...+..
T Consensus 166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 135678999999999999999998763 599999999999976 9999999999986434443
No 320
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.98 E-value=1.2e-31 Score=236.08 Aligned_cols=165 Identities=24% Similarity=0.419 Sum_probs=133.4
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
.+++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.++.. ..+++ .+||++|++.+++
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~---~~~~~-~i~yv~Q~~~~~~ 112 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRA-ISAYVQQDDLFIP 112 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH---HHHhh-hceeeccccccCc
Confidence 467999999999999999999999999999999999999885 7999999998642 33444 4999999999987
Q ss_pred c-cHHHHhhcCCCC-----CC----HHHHHHHHHHhcccc-----------------------------------ccccC
Q psy10472 85 T-SVRENIRYGDSS-----VS----DEQIEEAAKLANAHG-----------------------------------FISEF 119 (181)
Q Consensus 85 ~-tv~enl~~~~~~-----~~----~~~~~~~~~~~~~~~-----------------------------------~~~~~ 119 (181)
. ||+||+.|+... .. .++++++++.+++.+ ++.|+
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 5 999999875311 11 223556666655422 24467
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hh-hcCCeEEEEeCCeEEeecCCch
Q psy10472 120 PSGALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~-~~-~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
|+++||+.++..+++.+++++ +|+|+|+++|+++ .+ ..||++++|++|+++. .++.+
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~-~G~~~ 252 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY-LGSPD 252 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE-ECCHH
Confidence 999999999999999999875 4899999999996 45 5599999999999988 45443
No 321
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.98 E-value=2.1e-31 Score=206.49 Aligned_cols=149 Identities=19% Similarity=0.292 Sum_probs=113.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-ECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-ISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
.+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.+.+.+|+. |+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--------------~~~~~~~l~~~ltv 66 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--------------PLGANSFILPGLTG 66 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--------------ccccccccCCcCcH
Confidence 379999999999999999999999999999999999999999997 766432 12245567775 99
Q ss_pred HHHhhcCCC--CCCHHHH-HHHHHHhcc-----------------------------ccccccCCCCCCCHHHHHHHHHH
Q psy10472 88 RENIRYGDS--SVSDEQI-EEAAKLANA-----------------------------HGFISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 88 ~enl~~~~~--~~~~~~~-~~~~~~~~~-----------------------------~~~~~~~P~~~LD~~~~~~i~~~ 135 (181)
.||+.+... ....++. ..+.+.+++ .-++.|+|++++|+.+++.+.+.
T Consensus 67 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 67 EENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 999976421 1222221 111111111 12466889999999999999998
Q ss_pred HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.+..++.|+|++||+++.+.. ||++++|++|+++..
T Consensus 147 l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 147 LACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred HHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEe
Confidence 7654445789999999999865 999999999999873
No 322
>PLN03232 ABC transporter C family member; Provisional
Probab=99.98 E-value=1.4e-31 Score=253.52 Aligned_cols=155 Identities=28% Similarity=0.465 Sum_probs=130.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+. .++. .|+||+|+|++|++||+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~-~Iayv~Q~p~Lf~gTIr 696 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRG-SVAYVPQVSWIFNATVR 696 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecC-cEEEEcCccccccccHH
Confidence 5689999999999999999999999999999999999999998763 1233 49999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.|+.+ .++++.+++++.+++.. ++.|+|+++||+++
T Consensus 697 eNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t 775 (1495)
T PLN03232 697 ENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHV 775 (1495)
T ss_pred HHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 99999863 56777787877665432 34566999999999
Q ss_pred HHHHHHH-HHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~-l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 776 ~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~-~Gt~~e 825 (1495)
T PLN03232 776 AHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE-EGTFAE 825 (1495)
T ss_pred HHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEE-ecCHHH
Confidence 8877654 555557899999999999988899999999999998 455443
No 323
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=2.3e-31 Score=210.44 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=117.9
Q ss_pred ccccceeeEEec-----CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 9 KTILKDFNLRIP-----AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~-----~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
...+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++|++.++
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~ 73 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKAD 73 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCC
Confidence 447788888886 69999999999999999999999999999999999883 289999998754
Q ss_pred -cccHHHHhhcCCCC--CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 84 -ATSVRENIRYGDSS--VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 84 -~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
..|+.||+.+.... .......++++.+++.. ++.|+|+++||+.++..
T Consensus 74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~ 153 (246)
T cd03237 74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM 153 (246)
T ss_pred CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 56999999754211 11222344444444322 45678999999999999
Q ss_pred HHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472 132 VQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169 (181)
Q Consensus 132 i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i 169 (181)
+.++|+++. .++|||+||||++.+.. ||++++|+++..
T Consensus 154 l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 154 ASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 999998864 38999999999999876 999999976543
No 324
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=6.3e-32 Score=204.95 Aligned_cols=165 Identities=24% Similarity=0.369 Sum_probs=129.5
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA- 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~- 84 (181)
++++|+++|++|++|+++.|+|.||||||||+++|+|.+.|++|+|.|+|.++++++..+.. ..++-|||+|. .++
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA-~~larVfQdp~~gt~~~ 96 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA-NLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh-hHHHHHhcchhhCCccc
Confidence 46799999999999999999999999999999999999999999999999999998866543 45899999993 565
Q ss_pred ccHHHHhhcCCCC-----CC----H---HHHHHHHHHhc--c-----------------------------ccccccCCC
Q psy10472 85 TSVRENIRYGDSS-----VS----D---EQIEEAAKLAN--A-----------------------------HGFISEFPS 121 (181)
Q Consensus 85 ~tv~enl~~~~~~-----~~----~---~~~~~~~~~~~--~-----------------------------~~~~~~~P~ 121 (181)
.|+.||+.++..+ .. . +...+.+..++ + .-++.|+-|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 4999999875211 00 1 11111111111 0 113456678
Q ss_pred CCCCHHHHHHHHHHHHHh-c-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEeec
Q psy10472 122 GALDNESEKLVQAALESA-C-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEML 173 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~-~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~~ 173 (181)
++|||.+.+.+++.-.+. . .+.|.+||||+++.+- +.+|.++|++|+|+.+.
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999987764 3 3789999999999884 58999999999998643
No 325
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=216.26 Aligned_cols=167 Identities=29% Similarity=0.432 Sum_probs=138.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCC--C
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPV--L 82 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~--l 82 (181)
...++++|||++++||.++|+|+||||||||=.+|.+++++. |+|.|+|+++..++... +|++ +.+|||+|+ |
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~-mQvVFQDPygSL 376 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRR-MQVVFQDPYGSL 376 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhh-ceEEEeCCCCCC
Confidence 346899999999999999999999999999999999999886 99999999998877544 4544 999999994 4
Q ss_pred cc-ccHHHHhhcCCC----CC----CHHHHHHHHHHhcccc------------------------------ccccCCCCC
Q psy10472 83 FA-TSVRENIRYGDS----SV----SDEQIEEAAKLANAHG------------------------------FISEFPSGA 123 (181)
Q Consensus 83 ~~-~tv~enl~~~~~----~~----~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~ 123 (181)
-| +||.+-|..+.. .. ..+++.++++.++++. .+.|+||++
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSA 456 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSA 456 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchH
Confidence 45 499988876631 11 2345667777776653 356779999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 124 LDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
||..-+.++.++|+.+. .|.+-++||||+..+.. ||+|++|++|+|+|. ++.+
T Consensus 457 LD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~-G~~~ 512 (534)
T COG4172 457 LDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ-GPTE 512 (534)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee-CCHH
Confidence 99999999999999864 48999999999999976 999999999999994 5433
No 326
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=6.3e-31 Score=248.87 Aligned_cols=152 Identities=24% Similarity=0.409 Sum_probs=125.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .|+|++|+|++|++|++
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l~~~Ti~ 504 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWIMPGTIK 504 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCccCCccHH
Confidence 4689999999999999999999999999999999999999999999987 28999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~ 128 (181)
|||.|+.. .+.++..++++.+++. -++.|+|+++||+.+
T Consensus 505 eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 505 DNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred HHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 99999853 2222223332222111 135577999999999
Q ss_pred HHHHHHH-HHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~-l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++ .++.
T Consensus 584 ~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~-~g~~ 631 (1490)
T TIGR01271 584 EKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYF-YGTF 631 (1490)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEE-EcCH
Confidence 9999974 566656899999999999998899999999999987 3443
No 327
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.5e-31 Score=194.20 Aligned_cols=165 Identities=25% Similarity=0.408 Sum_probs=133.1
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC--CCCCh----hhhccCcEEEEccCC
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL--KHLDG----TWLRGNVIGLINQEP 80 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i--~~~~~----~~~r~~~i~~v~q~~ 80 (181)
+..++|.||+|+.+.||.+.++||||+|||||+|.|.-+.-|.+|+..|.|... +..+. ..+|+. +|+|||..
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~-vgmvfqqy 91 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRN-VGMVFQQY 91 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHh-hhhhhhhh
Confidence 346799999999999999999999999999999999999999999999988643 22221 245655 99999999
Q ss_pred CCccc-cHHHHhhcCCCC---CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCC
Q psy10472 81 VLFAT-SVRENIRYGDSS---VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGA 123 (181)
Q Consensus 81 ~l~~~-tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~ 123 (181)
.++|. ||.||+..+... .. ..+..+.++.+.+.+ ++.++||++
T Consensus 92 ~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaa 171 (242)
T COG4161 92 NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 (242)
T ss_pred ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccc
Confidence 99986 999998764211 11 122334444443333 355679999
Q ss_pred CCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 124 LDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|||+-..++.++++++.+ |.|-++|||..+.++. |.+|+.|++|+|++.
T Consensus 172 ldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 172 LDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred cCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 999999999999999875 9999999999999977 999999999999994
No 328
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=7.7e-31 Score=248.78 Aligned_cols=152 Identities=25% Similarity=0.449 Sum_probs=127.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|+|++|++|++
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i~yv~Q~~~l~~~Ti~ 716 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------SVAYVPQQAWIQNDSLR 716 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------------EEEEEcCCccccCCcHH
Confidence 4699999999999999999999999999999999999999999999986 29999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~ 128 (181)
|||.|+.. .++++.+++++.+++. -++.|+|+++||+.+
T Consensus 717 eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~ 795 (1522)
T TIGR00957 717 ENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795 (1522)
T ss_pred HHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 99999853 3344444444332211 135577999999999
Q ss_pred HHHHHHHHHH---hcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALES---ACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~---~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++ .+++
T Consensus 796 ~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~-~g~~ 845 (1522)
T TIGR00957 796 GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE-MGSY 845 (1522)
T ss_pred HHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe-eCCH
Confidence 9999998853 345899999999999998899999999999987 4543
No 329
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=8.1e-31 Score=223.64 Aligned_cols=150 Identities=25% Similarity=0.369 Sum_probs=118.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv 87 (181)
+++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.+. .+++ .+.+++ .|+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-----------~i~~---~~~l~~~lTV 102 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-----------LIAI---SSGLNGQLTG 102 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----------eEEe---ccccCCCCcH
Confidence 4589999999999999999999999999999999999999999999999641 0222 233444 499
Q ss_pred HHHhhcCC--CCCCHH----HHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGD--SSVSDE----QIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~--~~~~~~----~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.+.. .....+ .+.++++.+++.. ++.|+|+++||+.+++.+
T Consensus 103 ~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 99997632 111221 2334455444322 356779999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++.|+++. +|+|||++|||++.+.. ||++++|++|++++.
T Consensus 183 lelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 183 LDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99998864 58999999999999866 999999999999873
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.2e-30 Score=230.50 Aligned_cols=155 Identities=27% Similarity=0.414 Sum_probs=124.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-S 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-t 86 (181)
+++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+ |.++ .|||++|++ .+++. |
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-----------~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-----------EVAYFDQHRAELDPEKT 399 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----------EEEEEeCcccccCCCCC
Confidence 46899999999999999999999999999999999999999999998 5321 399999986 46664 9
Q ss_pred HHHHhhcCCCCC--C--HHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHHHHH
Q psy10472 87 VRENIRYGDSSV--S--DEQIEEAAKLANAH------------------------------GFISEFPSGALDNESEKLV 132 (181)
Q Consensus 87 v~enl~~~~~~~--~--~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~~~i 132 (181)
|.+|+.++.... . ...+..++..+++. -++.|+||++||+.+++.+
T Consensus 400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 999998753211 1 23344445444332 1466789999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe-CCeEEeecCCch
Q psy10472 133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-AGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~-~G~i~~~~~~~~ 177 (181)
.++++.+ +.|||+||||.+++.. ||++++|+ +|++..+.+...
T Consensus 480 ~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~ 524 (635)
T PRK11147 480 EELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYH 524 (635)
T ss_pred HHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHH
Confidence 9999876 4599999999999965 99999998 899987655443
No 331
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.9e-31 Score=210.02 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=120.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhhcc-CcEEEEc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWLRG-NVIGLIN 77 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~r~-~~i~~v~ 77 (181)
.+|+++|+ +.+||+++|+|||||||||||++|+|+++|++|+|. ++|+++........+. ..++|++
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 58999994 999999999999999999999999999999999996 7787765432221211 1378999
Q ss_pred cCCCCccccHHHHhhcCCCC-CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 78 QEPVLFATSVRENIRYGDSS-VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 78 q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
|.+.+++.++.+++.+.... ...+...++++.+++.. ++.|+|+++||+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 98877765666665443111 11233455555554432 3567799999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEE
Q psy10472 128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~ 170 (181)
+++.+.+.++++. +++|||++||+++.+.. ||++++|+ |++.
T Consensus 174 ~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 174 QRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCC
Confidence 9999999998875 48999999999999975 99999995 4454
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.7e-30 Score=226.45 Aligned_cols=153 Identities=24% Similarity=0.353 Sum_probs=123.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-S 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-t 86 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ .+||+||++ .+++. |
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~-----------~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV-----------KLAYVDQSRDALDPNKT 404 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce-----------EEEEEeCchhhcCCCCC
Confidence 4589999999999999999999999999999999999999999999854 11 399999997 56654 9
Q ss_pred HHHHhhcCCCC----CCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHH
Q psy10472 87 VRENIRYGDSS----VSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 87 v~enl~~~~~~----~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+.||+.++... ......+.+++.+++.. ++.|+||++||+.+++.+
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484 (556)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 99999875311 11223445666655531 356779999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC-CeEEeecCC
Q psy10472 133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIVEMLGQ 175 (181)
Q Consensus 133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~-G~i~~~~~~ 175 (181)
.++|..+. + |+|+||||++++.. ||++++|++ |++....+.
T Consensus 485 ~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 485 EEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred HHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCC
Confidence 99998874 3 89999999999866 999999986 788754443
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.5e-30 Score=226.61 Aligned_cols=153 Identities=22% Similarity=0.348 Sum_probs=123.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCcc-cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFA-TS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~-~t 86 (181)
+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++ .|||+||++ .+++ .|
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~-----------~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV-----------KLAYVDQSRDALDPNKT 402 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce-----------EEEEEeCCccccCCCCc
Confidence 4699999999999999999999999999999999999999999999854 11 399999997 3665 49
Q ss_pred HHHHhhcCCCC----CCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHH
Q psy10472 87 VRENIRYGDSS----VSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 87 v~enl~~~~~~----~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+.||+.++... ........+++.+++.. ++.|+||++||+.+++.+
T Consensus 403 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 482 (552)
T TIGR03719 403 VWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL 482 (552)
T ss_pred HHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence 99999875321 11223445666665531 355779999999999999
Q ss_pred HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC-CeEEeecCC
Q psy10472 133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIVEMLGQ 175 (181)
Q Consensus 133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~-G~i~~~~~~ 175 (181)
.++|+++. .|||+||||++++.. ||++++|++ |++....+.
T Consensus 483 ~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 483 EEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred HHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCC
Confidence 99999874 389999999999876 999999987 587654443
No 334
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.9e-31 Score=227.40 Aligned_cols=162 Identities=23% Similarity=0.294 Sum_probs=124.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCC-ChhhhccCcEEEEccCCCCc-c-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHL-DGTWLRGNVIGLINQEPVLF-A- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~-~~~~~r~~~i~~v~q~~~l~-~- 84 (181)
+.+|+++||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++... .....++ .++|++|++.++ .
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK-HIGYVSSSLHLDYRV 351 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh-hceEECHHHHhhccc
Confidence 4589999999999999999999999999999999998876 699999999875321 1222343 499999997654 2
Q ss_pred -ccHHHHhhcCCC-------CCC---HHHHHHHHHHhcccc------------------------------ccccCCCCC
Q psy10472 85 -TSVRENIRYGDS-------SVS---DEQIEEAAKLANAHG------------------------------FISEFPSGA 123 (181)
Q Consensus 85 -~tv~enl~~~~~-------~~~---~~~~~~~~~~~~~~~------------------------------~~~~~P~~~ 123 (181)
.++.+++.++.. ... .++++++++.+++.. ++.|+||++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 366666643210 011 234556666666543 245679999
Q ss_pred CCHHHHHHHHHHHHHhc-CC-cEEEEEecCchhhh-c-CCeEEEEeCCeEEe
Q psy10472 124 LDNESEKLVQAALESAC-KG-RTVLMIAHRLSTVQ-N-ADLIVVLQAGQIVE 171 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~-~~-~tii~vtHd~~~~~-~-~d~v~~l~~G~i~~ 171 (181)
||+.+++.+.++|+++. ++ .|||+||||++++. . ||++++|++|++++
T Consensus 432 LD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 432 LDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 99999999999998874 44 57999999999985 3 89999999999877
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=2.1e-30 Score=189.41 Aligned_cols=130 Identities=28% Similarity=0.431 Sum_probs=106.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ..++|+||
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~~---------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------VKIGYFEQ---------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------EEEEEEcc----------
Confidence 46999999999999999999999999999999999999999999999984 13999998
Q ss_pred HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
+. ....+++.-+...+ +..-++.|+|+++||+.++..+.+.++++ +.|+|++||+++.+.. ||++++|++
T Consensus 71 --lS----~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~ 142 (144)
T cd03221 71 --LS----GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELED 142 (144)
T ss_pred --CC----HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeC
Confidence 11 11123332222222 33446789999999999999999999876 4799999999999965 999999999
Q ss_pred Ce
Q psy10472 167 GQ 168 (181)
Q Consensus 167 G~ 168 (181)
|+
T Consensus 143 g~ 144 (144)
T cd03221 143 GK 144 (144)
T ss_pred CC
Confidence 85
No 336
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=9e-31 Score=202.19 Aligned_cols=157 Identities=27% Similarity=0.389 Sum_probs=118.0
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
...+|+||||++++||.++|+|+||||||||||+|+|.++|++|+|.++|+-..- -.+ .+|+-| +.|.
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l---i~l---g~Gf~p------elTG 106 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL---IEL---GAGFDP------ELTG 106 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh---hhc---ccCCCc------ccch
Confidence 3569999999999999999999999999999999999999999999999953211 110 122211 2489
Q ss_pred HHHhhcCC-----C-CCCHHHHHHHHHHhcccccccc-----------------------------CCCCCCCHHHHHHH
Q psy10472 88 RENIRYGD-----S-SVSDEQIEEAAKLANAHGFISE-----------------------------FPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------~P~~~LD~~~~~~i 132 (181)
+||+.+.. . ...++..+++.+..++.++++. +-.+..|+.-++.-
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~ 186 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence 99987631 1 1123445556665555554433 33467899988888
Q ss_pred HHHHHHh-cCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 133 QAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+.+.++ .++.|+|+||||++.++. ||++++|++|++.. .+.++
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~-~G~~~ 232 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM-EGSPE 232 (249)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE-cCCHH
Confidence 8888876 568999999999999976 99999999999988 45443
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=228.48 Aligned_cols=154 Identities=19% Similarity=0.305 Sum_probs=121.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l~~~- 85 (181)
+.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+||++|++ .+.+.
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------------IKLGYFAQHQLEFLRADE 392 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------------EEEEEecCcchhhCCccc
Confidence 46999999999999999999999999999999999999999999998641 1399999975 34443
Q ss_pred cHHHHhhcCCCCCCHHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHHHHHHHH
Q psy10472 86 SVRENIRYGDSSVSDEQIEEAAKLANAH------------------------------GFISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~~~i~~~ 135 (181)
|+.+++...........+..+++.+++. -++.|+||++||+.++..+.++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~ 472 (638)
T PRK10636 393 SPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA 472 (638)
T ss_pred hHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 8888764211112233445555555442 1466789999999999999999
Q ss_pred HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
|..+ . .|||+||||++++.. ||++++|++|+++...+..
T Consensus 473 L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 473 LIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred HHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCH
Confidence 9887 3 499999999999966 9999999999997434443
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=2.8e-30 Score=228.75 Aligned_cols=144 Identities=22% Similarity=0.403 Sum_probs=122.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ .++|++|++.+|+.|++
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~-~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KG-KLFYVPQRPYMTLGTLR 532 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CC-cEEEECCCCCCCCcCHH
Confidence 3699999999999999999999999999999999999999999998753 22 49999999999988999
Q ss_pred HHhhcCCC-------CCCHHHHHHHHHHhcccc--------------------------------------ccccCCCCC
Q psy10472 89 ENIRYGDS-------SVSDEQIEEAAKLANAHG--------------------------------------FISEFPSGA 123 (181)
Q Consensus 89 enl~~~~~-------~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~P~~~ 123 (181)
||+.++.. ...++++.++++.+++.+ ++.|+||++
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 99998631 234556667776665432 244669999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472 124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~ 166 (181)
||+.+++.+.+.+++. |+|+|+|||+++.+..||++++|+.
T Consensus 613 LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 613 VSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999998764 8999999999999888999999963
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.1e-30 Score=188.87 Aligned_cols=143 Identities=31% Similarity=0.492 Sum_probs=115.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++ .++|+||
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~-~i~~~~q---------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR-RIGYVPQ---------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHh-ceEEEee----------
Confidence 35899999999999999999999999999999999999999999999999876554444444 4999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhc-CCeEEEEe
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQ 165 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~ 165 (181)
+ +....+++.-+...+ ...-++.|+|+++||+.++..+.+.+.+..+ ++|+|++||+++.+.. ||++++|+
T Consensus 81 --l----S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 81 --L----SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLK 154 (157)
T ss_pred --C----CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 1 111122222222222 2344678999999999999999999987643 6899999999999977 89999999
Q ss_pred CCe
Q psy10472 166 AGQ 168 (181)
Q Consensus 166 ~G~ 168 (181)
+|+
T Consensus 155 ~g~ 157 (157)
T cd00267 155 DGK 157 (157)
T ss_pred CcC
Confidence 875
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=204.35 Aligned_cols=158 Identities=28% Similarity=0.370 Sum_probs=116.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
..+++||||+|++||+++|+|+||||||||-|+|+||++|++|+|+|+|+++..++....+.+ +--+.+.-. ..
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~-v~elL~~Vg-----l~ 99 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRER-VLELLEKVG-----LP 99 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHH-HHHHHHHhC-----CC
Confidence 468999999999999999999999999999999999999999999999999877663222211 110000000 00
Q ss_pred HHh--hcCCCC--CCHHHHHHHHH-HhccccccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCe
Q psy10472 89 ENI--RYGDSS--VSDEQIEEAAK-LANAHGFISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADL 160 (181)
Q Consensus 89 enl--~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~ 160 (181)
++. .++... ...+++.-+-. .++..-++.|+|+++||...+.++..++.+++ .|.|.++||||++.+.. |||
T Consensus 100 ~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 100 EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 111 111111 11233322111 23445577999999999999999999998875 39999999999999987 999
Q ss_pred EEEEeCCeEEee
Q psy10472 161 IVVLQAGQIVEM 172 (181)
Q Consensus 161 v~~l~~G~i~~~ 172 (181)
+.+|..|++++.
T Consensus 180 i~VMy~G~iVE~ 191 (268)
T COG4608 180 IAVMYLGKIVEI 191 (268)
T ss_pred EEEEecCceeEe
Confidence 999999999994
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=4.3e-30 Score=193.62 Aligned_cols=137 Identities=25% Similarity=0.270 Sum_probs=109.1
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS 86 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t 86 (181)
+.+.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|++.
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q~~~----- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQYID----- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEcccCC-----
Confidence 345678884 9999999999999999999999999999999999999999852 789999764
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEE
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIV 162 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~ 162 (181)
+ +...++++.-+...+ ...-++.|+|+++||+.+++.+.+.+.++. + +.|+|++||+++.+.. ||+++
T Consensus 72 ----L----SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 143 (177)
T cd03222 72 ----L----SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 (177)
T ss_pred ----C----CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence 1 111123333222222 334467899999999999999999998764 4 4899999999999875 99999
Q ss_pred EEeCCeEE
Q psy10472 163 VLQAGQIV 170 (181)
Q Consensus 163 ~l~~G~i~ 170 (181)
+|+++-.+
T Consensus 144 ~l~~~~~~ 151 (177)
T cd03222 144 VFEGEPGV 151 (177)
T ss_pred EEcCCCcc
Confidence 99987554
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=5e-30 Score=241.35 Aligned_cols=159 Identities=26% Similarity=0.462 Sum_probs=129.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~- 84 (181)
+.+|+|||+++++||+++|+|||||||||||++|+|+.+ |++|+|.+||+++.. .+++ .+|||+|++.+++
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~~~~-~i~yv~Q~~~~~~~ 850 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----SFQR-SIGYVQQQDLHLPT 850 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----hhhc-ceeeecccccCCCC
Confidence 569999999999999999999999999999999999997 788999999998742 3444 4999999987665
Q ss_pred ccHHHHhhcCCC-----CCCH----HHHHHHHHHhccc----------------------------------cccccCCC
Q psy10472 85 TSVRENIRYGDS-----SVSD----EQIEEAAKLANAH----------------------------------GFISEFPS 121 (181)
Q Consensus 85 ~tv~enl~~~~~-----~~~~----~~~~~~~~~~~~~----------------------------------~~~~~~P~ 121 (181)
.||+||+.+... .... ++++++++.+++. -++.|+||
T Consensus 851 ~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 599999987421 1111 2345555544331 14568899
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhh--hcCCeEEEEeCC-eEEee
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTV--QNADLIVVLQAG-QIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~--~~~d~v~~l~~G-~i~~~ 172 (181)
++||+.++..+++.|++++ +|+|||++||+++.. ..||++++|++| ++++.
T Consensus 931 sgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 931 SGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 9999999999999999874 589999999999863 459999999997 99874
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=4.8e-30 Score=241.50 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=132.2
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC----CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY----DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~----~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
.+++|+|+|+++++||+++|+||||||||||||+|+|+. +|.+|+|.++|+++.+.. ...|+ .++|++|++.++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~-~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRG-DVVYNAETDVHF 150 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCc-eeEEeccccccC
Confidence 356999999999999999999999999999999999986 579999999999875432 22333 499999999888
Q ss_pred cc-cHHHHhhcCCC---------CCCHH----H-HHHHHHHhcccc----------------------------------
Q psy10472 84 AT-SVRENIRYGDS---------SVSDE----Q-IEEAAKLANAHG---------------------------------- 114 (181)
Q Consensus 84 ~~-tv~enl~~~~~---------~~~~~----~-~~~~~~~~~~~~---------------------------------- 114 (181)
+. ||+||+.|+.. ....+ + .+.+++.+++.+
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 75 99999987521 11121 1 234566666543
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCc-hhhh-cCCeEEEEeCCeEEeecCCch
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRL-STVQ-NADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~-~~~~-~~d~v~~l~~G~i~~~~~~~~ 177 (181)
++.|+||++||+.++..+.+.|++++ + |+|+|+++|++ +.+. .+|++++|++|+++. .++.+
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~-~G~~~ 296 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY-FGPAD 296 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEE-ECCHH
Confidence 24467999999999999999999875 3 89999999997 4564 499999999999987 45443
No 344
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1.2e-29 Score=238.74 Aligned_cols=165 Identities=26% Similarity=0.314 Sum_probs=131.9
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
.+.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++ .++|++|++.+++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~-~i~yv~Q~d~~~~ 252 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRK-TSAYISQNDVHVG 252 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccc-eeEEecccccCCC
Confidence 466999999999999999999999999999999999999998 999999999875432 233 4999999998887
Q ss_pred c-cHHHHhhcCCCC------------CC-HH---------------------------HHHHHHHHhcccc---------
Q psy10472 85 T-SVRENIRYGDSS------------VS-DE---------------------------QIEEAAKLANAHG--------- 114 (181)
Q Consensus 85 ~-tv~enl~~~~~~------------~~-~~---------------------------~~~~~~~~~~~~~--------- 114 (181)
. ||+||+.|+... .. .+ .++.+++.+++..
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 5 999999875210 00 00 1234566666542
Q ss_pred -------------------------ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCch-hh-hcCCeEEEEe
Q psy10472 115 -------------------------FISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLS-TV-QNADLIVVLQ 165 (181)
Q Consensus 115 -------------------------~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~-~~-~~~d~v~~l~ 165 (181)
++.|+||++||+.++..+.+.|+++. .|+|+|+++|++. ++ ..||+|++|+
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 24467999999999999999999874 3899999999973 55 4599999999
Q ss_pred CCeEEeecCCch
Q psy10472 166 AGQIVEMLGQHE 177 (181)
Q Consensus 166 ~G~i~~~~~~~~ 177 (181)
+|+++. .++.+
T Consensus 413 ~G~ivy-~G~~~ 423 (1470)
T PLN03140 413 EGQIVY-QGPRD 423 (1470)
T ss_pred CceEEE-eCCHH
Confidence 999987 45543
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-29 Score=220.70 Aligned_cols=155 Identities=23% Similarity=0.308 Sum_probs=114.4
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS 86 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t 86 (181)
+.+++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. .++|++|++..+..+
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~------------~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW------------QLAWVNQETPALPQP 79 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------------EEEEEecCCCCCCCC
Confidence 44679999999999999999999999999999999999999999999998741 155555543222112
Q ss_pred HHHHhh------------------------cC-------C-C-CCCHHHHHHHHHHhccc--------------------
Q psy10472 87 VRENIR------------------------YG-------D-S-SVSDEQIEEAAKLANAH-------------------- 113 (181)
Q Consensus 87 v~enl~------------------------~~-------~-~-~~~~~~~~~~~~~~~~~-------------------- 113 (181)
+.+++. +. . . .....++..+++.+++.
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 221110 00 0 0 01123445556555542
Q ss_pred ----------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 114 ----------GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 114 ----------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
-++.|+||++||+.+...+.+.|+.+ +.|||+||||.+++.. ||++++|++|++..+.+.
T Consensus 160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~ 230 (638)
T PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGN 230 (638)
T ss_pred HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 13567799999999999999999876 4699999999999966 999999999999765453
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=2.4e-29 Score=219.96 Aligned_cols=146 Identities=23% Similarity=0.254 Sum_probs=119.4
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~e 89 (181)
.|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ + .++|+||++.++. .||+|
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~-----------~i~y~~Q~~~~~~~~tv~e 419 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L-----------KISYKPQYIKPDYDGTVED 419 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e-----------eEEEecccccCCCCCcHHH
Confidence 4899999999999999999999999999999999999999999885 1 2899999987665 59999
Q ss_pred HhhcCCCCC-CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHh
Q psy10472 90 NIRYGDSSV-SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESA 139 (181)
Q Consensus 90 nl~~~~~~~-~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~ 139 (181)
|+.++.... ......++++.+++.. ++.|+||++||+.++..+.++|+++
T Consensus 420 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 420 LLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred HHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 998752211 1233455565554432 4567899999999999999999987
Q ss_pred c--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 140 C--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 140 ~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
. .|.|+|+||||++++.. |||+++|++ ++..
T Consensus 500 ~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 500 AEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 4 38999999999999876 999999965 6644
No 347
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=4.5e-29 Score=236.76 Aligned_cols=152 Identities=25% Similarity=0.456 Sum_probs=121.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. +.|+|++|+|++|+.|++
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l~~~Tv~ 738 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWIMNATVR 738 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCccCCCcHH
Confidence 458999999999999999999999999999999999999999999762 139999999999989999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
||+.|+.. .+.++..++++.+++ .-++.|+|+++||+..
T Consensus 739 enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 739 GNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 99999743 222233333322111 0135677999999998
Q ss_pred HHHHHHH-HHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~-l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.+++. +....+|+|+|++||+++.+..||+|++|++|++++ .++.
T Consensus 818 ~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~-~G~~ 865 (1560)
T PTZ00243 818 GERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEF-SGSS 865 (1560)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE-ecCH
Confidence 8877764 333345899999999999998899999999999987 4443
No 348
>KOG0054|consensus
Probab=99.96 E-value=3.7e-29 Score=230.56 Aligned_cols=155 Identities=31% Similarity=0.535 Sum_probs=133.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.+.|+||||+|++|+.+||+||-||||||||.+|+|.++..+|+|.++|. ++|++|.|+++++||+
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--------------iaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------------VAYVPQQPWIQNGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------------EEEeccccHhhCCcHH
Confidence 34899999999999999999999999999999999999999999999983 8999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.||. ..++++.+++++.+.+.. ++.|-|.+++|.+.
T Consensus 600 eNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 600 ENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 9999995 467777788887765543 23344999999997
Q ss_pred HHHHHH-HHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 129 EKLVQA-ALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 129 ~~~i~~-~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
.+.+.+ .++..-+++|+|+|||.++.+..||+|++|++|+|.+ .|+.++.
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~-~Gty~el 729 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVE-SGTYEEL 729 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEec-ccCHHHH
Confidence 666555 5655567899999999999999999999999999998 5766543
No 349
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=194.49 Aligned_cols=164 Identities=26% Similarity=0.367 Sum_probs=131.1
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-hhhccCcEEEEccCCC--Cc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TWLRGNVIGLINQEPV--LF 83 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~--l~ 83 (181)
..+++|+|+||+|++||.++|+|||||||||||++++|.++|++|.+.+.|+.....+. .++|++ ||+|...-. +.
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~-IG~vS~~L~~~~~ 120 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR-IGLVSSELHERFR 120 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH-hCccCHHHHhhcc
Confidence 45789999999999999999999999999999999999999999999999998876655 567765 999986532 22
Q ss_pred c-ccHHHHhhcCC------C--CCCHH---HHHHHHHHhcccc-----------------------------ccccCCCC
Q psy10472 84 A-TSVRENIRYGD------S--SVSDE---QIEEAAKLANAHG-----------------------------FISEFPSG 122 (181)
Q Consensus 84 ~-~tv~enl~~~~------~--~~~~~---~~~~~~~~~~~~~-----------------------------~~~~~P~~ 122 (181)
+ .+++|-+.-+. . ..+++ +...+++.+++.. ++.|+|++
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 3 37887776431 1 22333 3344555554432 46678999
Q ss_pred CCCHHHHHHHHHHHHHhc-C--CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 123 ALDNESEKLVQAALESAC-K--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~-~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+||...++.+.+.+.++. . +.++|+|||..+++.. .++++.+++|+++.
T Consensus 201 GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 999999999999998864 2 6899999999999976 79999999999986
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=6.6e-29 Score=221.01 Aligned_cols=153 Identities=23% Similarity=0.318 Sum_probs=117.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
.+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. . .+||++|++. ...++.+
T Consensus 523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~-~igyv~Q~~~-~~l~~~~ 589 (718)
T PLN03073 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------V-RMAVFSQHHV-DGLDLSS 589 (718)
T ss_pred eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------e-eEEEEecccc-ccCCcch
Confidence 5899999999999999999999999999999999999999999998651 1 3999999862 1123333
Q ss_pred Hhh--cC--CCCCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 90 NIR--YG--DSSVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 90 nl~--~~--~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
|.. +. ......+++..+++.+++.. ++.|+||++||+.+++.+.+.
T Consensus 590 ~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~ 669 (718)
T PLN03073 590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQG 669 (718)
T ss_pred hHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 321 11 11123445556666555431 356779999999999999988
Q ss_pred HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+... + .|||+||||++++.. ||++++|++|+++...+...
T Consensus 670 L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 670 LVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred HHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 8765 3 499999999999976 99999999999985445443
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.6e-29 Score=180.76 Aligned_cols=154 Identities=21% Similarity=0.328 Sum_probs=123.0
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
.+-.|-++||+|.+||++.|+||||||||||+..+.|.+.++ +|++.++++++..++... +++|++||++.+|+
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q---Rq~GiLFQD~lLFp 90 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ---RQIGILFQDALLFP 90 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh---hheeeeeccccccc
Confidence 355788999999999999999999999999999999999875 799999999998776432 34999999999998
Q ss_pred c-cHHHHhhcCCCC--CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 T-SVRENIRYGDSS--VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~-tv~enl~~~~~~--~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
. +|.+|+.|+.+. .. +.....+++..++.+ ++.++|++.||..-+
T Consensus 91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR 170 (213)
T COG4136 91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALR 170 (213)
T ss_pred ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHH
Confidence 6 999999987432 11 222344555544433 356779999999999
Q ss_pred HHHHHHHH-Hhc-CCcEEEEEecCchhhhcCCeEEEE
Q psy10472 130 KLVQAALE-SAC-KGRTVLMIAHRLSTVQNADLIVVL 164 (181)
Q Consensus 130 ~~i~~~l~-~~~-~~~tii~vtHd~~~~~~~d~v~~l 164 (181)
.++.+..- +.. .|..+|+||||.+.+....||+-|
T Consensus 171 ~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 171 DQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999874 443 499999999999988766666655
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=5.4e-29 Score=234.42 Aligned_cols=160 Identities=24% Similarity=0.394 Sum_probs=128.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+.+|+|||+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+... ..+++ .+||++|++.+++.
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~---~~~~~-~igyv~Q~d~~~~~l 968 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFAR-ISGYCEQNDIHSPQV 968 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCCh---HHhhh-heEEEccccccCCCC
Confidence 4699999999999999999999999999999999999763 78999999987532 23343 49999999988875
Q ss_pred cHHHHhhcCCC-----CCCH----HHHHHHHHHhcccc----------------------------------ccccCCCC
Q psy10472 86 SVRENIRYGDS-----SVSD----EQIEEAAKLANAHG----------------------------------FISEFPSG 122 (181)
Q Consensus 86 tv~enl~~~~~-----~~~~----~~~~~~~~~~~~~~----------------------------------~~~~~P~~ 122 (181)
||+||+.|+.. ..+. +.++++++.+++.. ++.|+||+
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 99999987421 1121 23556666655432 34577999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh-h-hcCCeEEEEeC-CeEEee
Q psy10472 123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLST-V-QNADLIVVLQA-GQIVEM 172 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~-~-~~~d~v~~l~~-G~i~~~ 172 (181)
+||+.++..+++.|++++ +|+|||++||+++. + ..||++++|++ |+++..
T Consensus 1049 gLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1049 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 999999999999999875 58999999999984 4 45999999996 898873
No 353
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=197.23 Aligned_cols=161 Identities=22% Similarity=0.384 Sum_probs=115.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccC-CCCcc-cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQE-PVLFA-TS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~-~~l~~-~t 86 (181)
-++++||||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+-........+ .+++|+-. .+++. ..
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~--~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR--SIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH--HHHHHhhhhheeeeech
Confidence 3589999999999999999999999999999999999999999999999864432222222 26766533 33321 12
Q ss_pred HHHHhhcCC--CCCC----HHHHHHHHHHhccc-----------------------------cccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGD--SSVS----DEQIEEAAKLANAH-----------------------------GFISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~~P~~~LD~~~~~~ 131 (181)
+.+-+.... .... .++.....+.+++. -+..|+||-+||...+..
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 333221100 0001 11111111211111 245678999999999999
Q ss_pred HHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 132 VQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 132 i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.+.+++.. +++||+++||+++.+.. ||||++|+.|+++.
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 999999874 48999999999998865 99999999999987
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=9.4e-29 Score=202.24 Aligned_cols=165 Identities=31% Similarity=0.448 Sum_probs=130.4
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCChhh---hccCcEEEEccC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDGTW---LRGNVIGLINQE 79 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~ 79 (181)
...++++|||+|++||.+||+|+||||||-..+.++++++. .+|+|.|+|+++-..+... .|..+|+++||+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 35689999999999999999999999999999999999864 3799999999998777544 455679999999
Q ss_pred CC--Cccc-cHHHHh----hcCCCCCC---HHHHHHHHHHhcccc--------------------------------ccc
Q psy10472 80 PV--LFAT-SVRENI----RYGDSSVS---DEQIEEAAKLANAHG--------------------------------FIS 117 (181)
Q Consensus 80 ~~--l~~~-tv~enl----~~~~~~~~---~~~~~~~~~~~~~~~--------------------------------~~~ 117 (181)
|. |-|. |+...+ .+...-.. ++++.+.++.+++.+ ++.
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence 94 3343 665544 33322111 223333444433222 577
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 118 EFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 118 ~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+||.+||...+.+|+++|++++ + |.++++||||+..+.. ||||++|.+|+++|.
T Consensus 182 DEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred cCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 88999999999999999999875 3 9999999999999977 999999999999984
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3e-28 Score=215.17 Aligned_cols=154 Identities=23% Similarity=0.335 Sum_probs=111.6
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
.+++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. .+++++|.+.... .+
T Consensus 15 ~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~------------~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL------------IVARLQQDPPRNVEGT 82 (635)
T ss_pred CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC------------EEEEeccCCCCCCCCC
Confidence 3579999999999999999999999999999999999999999999998731 1333333321100 11
Q ss_pred HH------------------------------HHhhcC--------C-C-CCCHHHHHHHHHHhccc-------------
Q psy10472 87 VR------------------------------ENIRYG--------D-S-SVSDEQIEEAAKLANAH------------- 113 (181)
Q Consensus 87 v~------------------------------enl~~~--------~-~-~~~~~~~~~~~~~~~~~------------- 113 (181)
+. +|+.+. . . .....++.++++.+++.
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek 162 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence 21 222110 0 0 01123344555554432
Q ss_pred --------------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 114 --------------GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 114 --------------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
-++.|+||++||+.+++.+.+.|+.+. .|||+||||..++.. ||+|++|++|+++.+.+.
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~ 237 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGN 237 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCC
Confidence 146788999999999999999998773 599999999999976 999999999999864443
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=4.7e-28 Score=180.23 Aligned_cols=166 Identities=21% Similarity=0.360 Sum_probs=127.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-c-cc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-F-AT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-~-~~- 85 (181)
..+++.|||++++|+..+++|.||||||||.|+|+|+.+|++|+|.+||+.+.-- ....|.+.|-++||+|+- | |.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~-Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG-DYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccccc-chHhhhhheeeeecCCccccChhh
Confidence 3588999999999999999999999999999999999999999999999987533 344566679999999953 3 33
Q ss_pred cHHHHhhcCCCC---C----CHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHH
Q psy10472 86 SVRENIRYGDSS---V----SDEQIEEAAKLANAHG------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 86 tv~enl~~~~~~---~----~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~ 128 (181)
.+..-+..+.+. . ..+++.+-++++++.. .+.++..++||...
T Consensus 105 ~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~sm 184 (267)
T COG4167 105 RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSM 184 (267)
T ss_pred hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHH
Confidence 555555444211 1 1233344444444322 23344568999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+.++..+.-++. .|.+.|+|+.++..++. +|.|++|++|+++|+ +..
T Consensus 185 rsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~-G~t 234 (267)
T COG4167 185 RSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER-GST 234 (267)
T ss_pred HHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec-CCh
Confidence 999998876654 39999999999999987 999999999999994 543
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.7e-29 Score=184.82 Aligned_cols=149 Identities=22% Similarity=0.377 Sum_probs=121.7
Q ss_pred cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-
Q psy10472 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~- 84 (181)
++.+.++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|+|.++..... ..++ .+-|+-..+.+=+
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~-~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQ-ALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHH-HHHHhhccccccch
Confidence 355789999999999999999999999999999999999999999999999988865432 2333 3678888887765
Q ss_pred ccHHHHhhcCCCC---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 85 TSVRENIRYGDSS---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 85 ~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.|+.||+.|.... .+...+.++++.+++.+ ++.|+|+++||.+....+
T Consensus 90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l 169 (209)
T COG4133 90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169 (209)
T ss_pred hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence 4999999986321 34566788888777655 356789999999999999
Q ss_pred HHHHHHh-cCCcEEEEEecCchhhh
Q psy10472 133 QAALESA-CKGRTVLMIAHRLSTVQ 156 (181)
Q Consensus 133 ~~~l~~~-~~~~tii~vtHd~~~~~ 156 (181)
..++... .+|-.||.+||.+-.+.
T Consensus 170 ~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 170 TALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHHHHHHhcCCCEEEEecCCccCCC
Confidence 9998764 56889999999876553
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=4.4e-29 Score=218.35 Aligned_cols=154 Identities=20% Similarity=0.253 Sum_probs=118.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhh-ccCcEEEEc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWL-RGNVIGLIN 77 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~-r~~~i~~v~ 77 (181)
.+|++++ .+++|++++|+||||||||||||+|+|+++|++|+|. ++|+++........ .+..+++.+
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 166 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP 166 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence 4899999 8999999999999999999999999999999999997 89987753221100 111245445
Q ss_pred c----CCCCccccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472 78 Q----EPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGAL 124 (181)
Q Consensus 78 q----~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L 124 (181)
| .|.+|..||.||+.+. ...+++.++++.+++.. ++.|+||++|
T Consensus 167 q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~L 243 (590)
T PRK13409 167 QYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL 243 (590)
T ss_pred cchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 4 4555666999998642 11233445555444322 4667899999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCC
Q psy10472 125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAG 167 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G 167 (181)
|+.++..+.+.++++.+|+|+|+||||++.+.. ||++++|+++
T Consensus 244 D~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 244 DIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999886448999999999999976 9999999863
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.1e-27 Score=180.35 Aligned_cols=145 Identities=26% Similarity=0.346 Sum_probs=105.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+++||+|++|++++|+|||||||||||+++. +++|++.++|.. .. .++..++|++|. ...
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~-----~~~~~~~~~~q~------~~l 71 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK-----FSRNKLIFIDQL------QFL 71 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc-----cccccEEEEhHH------HHH
Confidence 56899999999999999999999999999999985 379999998752 11 112238899881 122
Q ss_pred HHhhcCC-------CCCC---HHHHHHHHHHh-c--cccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh
Q psy10472 89 ENIRYGD-------SSVS---DEQIEEAAKLA-N--AHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLST 154 (181)
Q Consensus 89 enl~~~~-------~~~~---~~~~~~~~~~~-~--~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~ 154 (181)
+.+.+.. ...+ .+++.-+...+ + ..-++.|+|+++||+.+++.+.+.++++. +|.|||++||+++.
T Consensus 72 ~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 72 IDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred HHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 2222211 0111 22222222222 3 34567899999999999999999998865 58999999999998
Q ss_pred hhcCCeEEEEeCCeE
Q psy10472 155 VQNADLIVVLQAGQI 169 (181)
Q Consensus 155 ~~~~d~v~~l~~G~i 169 (181)
+..||++++|++|+.
T Consensus 152 ~~~~d~i~~l~~g~~ 166 (176)
T cd03238 152 LSSADWIIDFGPGSG 166 (176)
T ss_pred HHhCCEEEEECCCCC
Confidence 877999999977543
No 360
>KOG0059|consensus
Probab=99.95 E-value=2.2e-28 Score=222.30 Aligned_cols=166 Identities=19% Similarity=0.352 Sum_probs=136.2
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-hhccCcEEEEccCCCCccc-cHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-WLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
+++++||.|++||+.++.|+|||||||+++++.|..+|++|+++++|.++...... ..++ .+||.||...+++. |.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~-~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK-QLGYCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh-hcccCCchhhhhhhccHH
Confidence 89999999999999999999999999999999999999999999999988654333 2444 49999999999975 999
Q ss_pred HHhhcCCC--C----CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472 89 ENIRYGDS--S----VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 89 enl~~~~~--~----~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~ 133 (181)
|.+.+..+ . .-.+.+++.++.+++.. ++.|+|++|+||.+++.++
T Consensus 659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW 738 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 99987531 1 11233455555554433 3457799999999999999
Q ss_pred HHHHHhcC-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472 134 AALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 134 ~~l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 178 (181)
+++.+.++ |+++|++||.+++++. |||+.+|-+|++.. .|.++.
T Consensus 739 ~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c-iGs~q~ 784 (885)
T KOG0059|consen 739 DIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC-IGSPQE 784 (885)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE-ecChHH
Confidence 99998765 5699999999999987 99999999999987 455443
No 361
>KOG0061|consensus
Probab=99.95 E-value=4.5e-28 Score=212.61 Aligned_cols=166 Identities=31% Similarity=0.448 Sum_probs=134.7
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC---CcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV---SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p---~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
..+++|++||..+++||++||+|||||||||||++|+|.... .+|+|.+||+.. +...+++ ..|||.|+..++
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~~~~-~s~yV~QdD~l~ 116 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRSFRK-ISGYVQQDDVLL 116 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhhhhh-eeEEEccccccc
Confidence 357899999999999999999999999999999999999874 789999999653 2344554 499999999999
Q ss_pred cc-cHHHHhhcCC----CC-----CCHHHHHHHHHHhcccc----------------------------------ccccC
Q psy10472 84 AT-SVRENIRYGD----SS-----VSDEQIEEAAKLANAHG----------------------------------FISEF 119 (181)
Q Consensus 84 ~~-tv~enl~~~~----~~-----~~~~~~~~~~~~~~~~~----------------------------------~~~~~ 119 (181)
+. ||+|++.|.. +. ...++++++++.+++.. +..|+
T Consensus 117 ~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDE 196 (613)
T KOG0061|consen 117 PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDE 196 (613)
T ss_pred ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecC
Confidence 86 9999998752 11 12345566666665442 35577
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh-h-hcCCeEEEEeCCeEEeecCCch
Q psy10472 120 PSGALDNESEKLVQAALESAC-KGRTVLMIAHRLST-V-QNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~-~-~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
||++||..++.++.+.|++++ +|+|||++-|.+.. + ...|++++|.+|+++. .|+++
T Consensus 197 PTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy-~G~~~ 256 (613)
T KOG0061|consen 197 PTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY-SGSPR 256 (613)
T ss_pred CCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE-ecCHH
Confidence 999999999999999999875 59999999999964 3 5599999999999987 45443
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=205.99 Aligned_cols=158 Identities=25% Similarity=0.362 Sum_probs=124.9
Q ss_pred ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
..+.+++|+++||+|.+|+++||||+||||||||||+|+|...|++|+|.+.+- .+++|++|++.+.+
T Consensus 12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~------------~~v~~l~Q~~~~~~ 79 (530)
T COG0488 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG------------LRVGYLSQEPPLDP 79 (530)
T ss_pred eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC------------ceEEEeCCCCCcCC
Confidence 345678999999999999999999999999999999999999999999987651 13999999999887
Q ss_pred c-cHHHHhhcCCCCCC------------------------------------HHHHHHHHHHhcc---------------
Q psy10472 85 T-SVRENIRYGDSSVS------------------------------------DEQIEEAAKLANA--------------- 112 (181)
Q Consensus 85 ~-tv~enl~~~~~~~~------------------------------------~~~~~~~~~~~~~--------------- 112 (181)
. ||.+.+..+..... +.++..++.-+++
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 5 99988766531100 0111222221211
Q ss_pred -------------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 113 -------------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 113 -------------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+-++.|+||+.||.++...+.+.|..+. | |+|+||||-.++.. |++|+.++.|++..+.+..
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 1146688999999999999999998654 5 99999999999976 9999999999998766643
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=171.67 Aligned_cols=164 Identities=23% Similarity=0.340 Sum_probs=121.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC-----EECCCCChhhh---ccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-----VDLKHLDGTWL---RGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g-----~~i~~~~~~~~---r~~~i~~v~q~~ 80 (181)
..-.++|||++.|||+.+|+|+|||||||||+||++-+.|+.|+|.+.- .++..++..+. .+..-|+|.|+|
T Consensus 19 ~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 19 GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 4467899999999999999999999999999999999999999998864 23444443321 122379999998
Q ss_pred C--Cc----cc-cHHHHhh-cCCCCC--CHHHHHHHHHHhcccc------------------------------ccccCC
Q psy10472 81 V--LF----AT-SVRENIR-YGDSSV--SDEQIEEAAKLANAHG------------------------------FISEFP 120 (181)
Q Consensus 81 ~--l~----~~-tv~enl~-~~~~~~--~~~~~~~~~~~~~~~~------------------------------~~~~~P 120 (181)
. +- .+ +|-|-++ .+.+.+ -.+...++++.+++.. ...++|
T Consensus 99 ~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEP 178 (258)
T COG4107 99 RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178 (258)
T ss_pred cccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCC
Confidence 3 21 12 4444433 222211 1233344444443221 245679
Q ss_pred CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|++||..-+..++++++.+. + +.++++||||+..+.. +||.++|++|++++.
T Consensus 179 TGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred CCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 99999999999999998864 3 8999999999999977 999999999999983
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=2e-25 Score=192.08 Aligned_cols=154 Identities=27% Similarity=0.366 Sum_probs=121.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-S 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-t 86 (181)
+.+++++||.|.+|+.++|+||||+|||||||+|+|...|.+|+|.+.-. -.+||..|+. .+++. |
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------------v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------------VKIGYFDQHRDELDPDKT 402 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------------eEEEEEEehhhhcCccCc
Confidence 57999999999999999999999999999999999999999999987531 1399999987 44444 8
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHHHHHHHHH
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLANAH------------------------------GFISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~~~i~~~l 136 (181)
+.|++.-..+......+...+..+++. -++.|+||+.||.++.+.+.+.|
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL 482 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 998887543222233444444333221 25678999999999999999999
Q ss_pred HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
..+. -|||+||||..++.. |++++.+++ ++....+...
T Consensus 483 ~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 483 LDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYE 521 (530)
T ss_pred HhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHH
Confidence 8874 699999999999977 999999998 6666445443
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=2e-26 Score=205.18 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=112.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC---CCCcceEEECCEECCCCC--h-----------hhhccCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY---DVSSGNITISGVDLKHLD--G-----------TWLRGNV 72 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~---~p~~G~i~i~g~~i~~~~--~-----------~~~r~~~ 72 (181)
+++|+|+||+|++|++++|+||||||||||||+|+|.. .|++|+|.+.++++.... . ....+..
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~ 269 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE 269 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 56999999999999999999999999999999999864 688999987665432111 0 0111223
Q ss_pred EEEEccCCCCccccHHHHhhcCC------------------------CCCCHHHHHHHHHHhcc----------------
Q psy10472 73 IGLINQEPVLFATSVRENIRYGD------------------------SSVSDEQIEEAAKLANA---------------- 112 (181)
Q Consensus 73 i~~v~q~~~l~~~tv~enl~~~~------------------------~~~~~~~~~~~~~~~~~---------------- 112 (181)
++|++|++.+...++.+|..... ......++..++..+++
T Consensus 270 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~ 349 (718)
T PLN03073 270 AQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGW 349 (718)
T ss_pred HHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHH
Confidence 67778765432211111111000 00001122222322222
Q ss_pred --------------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 113 --------------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 113 --------------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
.-++.|+||++||+.++..+.+.|+.+ +.|+|+||||.+++.. ||++++|++|++..+.++
T Consensus 350 k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~ 425 (718)
T PLN03073 350 RMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence 224678899999999999999999876 6899999999999976 999999999999754444
No 366
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=3.8e-26 Score=168.89 Aligned_cols=163 Identities=23% Similarity=0.376 Sum_probs=129.4
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccccHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFATSVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~tv~e 89 (181)
=|-.+|.++..||++-++|||||||||||-.++|+. |.+|+|.++|.++...+..++.++ -+|+.|+. ..|.+.|..
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArh-RAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH-RAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHH-HHHHhhccCCcchhhhhh
Confidence 466789999999999999999999999999999986 679999999999988777666655 37887765 456678999
Q ss_pred HhhcCCCCCC-HHHHHHHHHHhcccc------------------------------------ccccCCCCCCCHHHHHHH
Q psy10472 90 NIRYGDSSVS-DEQIEEAAKLANAHG------------------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 90 nl~~~~~~~~-~~~~~~~~~~~~~~~------------------------------------~~~~~P~~~LD~~~~~~i 132 (181)
.+.+..+... ...+.++...+++.+ ++-|+|.++||...+..+
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL 171 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL 171 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence 9988654321 223444444444332 345779999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhh-hcCCeEEEEeCCeEEeecCCc
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~-~~~d~v~~l~~G~i~~~~~~~ 176 (181)
..++..++ .|.+|||.+||++.- ..||+++.++.|++.. .+..
T Consensus 172 drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~-~G~~ 216 (248)
T COG4138 172 DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA-SGRR 216 (248)
T ss_pred HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe-ecch
Confidence 99998876 599999999999876 5599999999999987 3433
No 367
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.7e-26 Score=186.62 Aligned_cols=156 Identities=24% Similarity=0.306 Sum_probs=121.1
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH-HH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV-RE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv-~e 89 (181)
-+..||++|++||++.|+|.||||||||++++.|+++|++|+|++||+++..-+..++|+- ++-||.|.++|+.++ .|
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L-fSavFsDyhLF~~ll~~e 416 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL-FSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH-HHHHhhhHhhhHhhhCCc
Confidence 3678999999999999999999999999999999999999999999999998888888864 888999998887533 12
Q ss_pred HhhcCCCCCCHHHHHHHHH---------------------------------Hhcccc-ccccCCCCCCCHHHHHHHHHH
Q psy10472 90 NIRYGDSSVSDEQIEEAAK---------------------------------LANAHG-FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~---------------------------------~~~~~~-~~~~~P~~~LD~~~~~~i~~~ 135 (181)
+- .+.+.++..++ .++..+ +..|+=.+.-||.-++.++..
T Consensus 417 ~~------as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 417 GK------ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred cC------CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 21 11222222222 222111 223333467899999999887
Q ss_pred HH-Hhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeec
Q psy10472 136 LE-SAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEML 173 (181)
Q Consensus 136 l~-~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~ 173 (181)
+- .++ .|+||+.||||......|||++.+++|++++..
T Consensus 491 lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 64 344 599999999999999999999999999999843
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=165.44 Aligned_cols=157 Identities=23% Similarity=0.304 Sum_probs=116.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE----ECCCCChh---hhccCcEEEEccCCCC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV----DLKHLDGT---WLRGNVIGLINQEPVL 82 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~----~i~~~~~~---~~r~~~i~~v~q~~~l 82 (181)
++++++||+++.|||+++-||||||||||||+|.+-|.|++|+|.+.-. ++....+. ..|++.||||+|.-..
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999988543 22222222 3566679999997655
Q ss_pred ccc-cHHHHhhcCC--CCCC----HHHHHHHHHHhccc------------------------------cccccCCCCCCC
Q psy10472 83 FAT-SVRENIRYGD--SSVS----DEQIEEAAKLANAH------------------------------GFISEFPSGALD 125 (181)
Q Consensus 83 ~~~-tv~enl~~~~--~~~~----~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD 125 (181)
.|. +..|-++.+. .... ..+....+..+++. -++.|+||++||
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence 554 4444444321 0111 12223333333221 145678999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 126 NESEKLVQAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 126 ~~~~~~i~~~l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
..+++.+.++|.+. ++|+++|=|-||-+.-+. |||++.+..
T Consensus 185 a~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 185 ATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999875 469999999999988766 999988754
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.92 E-value=2.3e-24 Score=165.17 Aligned_cols=149 Identities=21% Similarity=0.216 Sum_probs=107.5
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---------ceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---------GNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---------G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
+++++++.+| +++|+||||||||||+++|+|+.+|.. |++.+.|++.... ..+ +.++|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANF-AEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---Cce-EEEEEEEEcCCCc
Confidence 7789999999 999999999999999999999987653 4677777665321 122 3599999998764
Q ss_pred c-----ccHHHHhhcCCC------CCC---HHHHHHHHHHh----cc-ccccccCCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy10472 84 A-----TSVRENIRYGDS------SVS---DEQIEEAAKLA----NA-HGFISEFPSGALDNESEKLVQAALESACKGRT 144 (181)
Q Consensus 84 ~-----~tv~enl~~~~~------~~~---~~~~~~~~~~~----~~-~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~t 144 (181)
. ..+.+-+..... ..+ ++++.-+...+ .- .-++.|+|+++||+..+..+.+.++++.++.|
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~t 168 (197)
T cd03278 89 YSIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQ 168 (197)
T ss_pred eeEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCE
Confidence 1 124444433210 011 11221111111 22 34678999999999999999999998766899
Q ss_pred EEEEecCchhhhcCCeEEEEeC
Q psy10472 145 VLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 145 ii~vtHd~~~~~~~d~v~~l~~ 166 (181)
||++||+++.+..||+++.+..
T Consensus 169 iIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 169 FIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred EEEEECCHHHHhhcceEEEEEe
Confidence 9999999998877999999864
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=1.7e-23 Score=163.63 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=52.5
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEe
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVE 171 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~ 171 (181)
-++.|+|+++||+.++..+.+.++++. +|.|+|+||||++.+..||++++| ++|+|++
T Consensus 160 llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 160 LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence 466789999999999999999998764 589999999999988779999999 9999987
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.90 E-value=1.6e-23 Score=151.07 Aligned_cols=115 Identities=37% Similarity=0.555 Sum_probs=93.4
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHH
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVREN 90 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~en 90 (181)
|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++. ++|++|++.+++. |+.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRR-IGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHT-EEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999999987555555554 9999999988876 89999
Q ss_pred hhcCCCCCCHHHHHHHHHHhccccccccC---CCCCCCHHHHHHHHH
Q psy10472 91 IRYGDSSVSDEQIEEAAKLANAHGFISEF---PSGALDNESEKLVQA 134 (181)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---P~~~LD~~~~~~i~~ 134 (181)
...++++++++.+++..+.... +...|..-.++.+.=
T Consensus 80 -------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~l 119 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLAL 119 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHH
T ss_pred -------cccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 2345677888888776644332 346777766665543
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.2e-22 Score=161.43 Aligned_cols=163 Identities=23% Similarity=0.304 Sum_probs=108.9
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHh-----c-CC----CCCcc-----------eEEECCEECCCCCh---
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE-----R-FY----DVSSG-----------NITISGVDLKHLDG--- 65 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~-----g-l~----~p~~G-----------~i~i~g~~i~~~~~--- 65 (181)
.-|+|||++|+.|.+++|+|+||||||||++.+. . +. .|..+ -|.++..++..-+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999999663 1 11 12211 35666666543211
Q ss_pred h-------hhcc---------------CcEEEEccCCCCc-cccHHHHhhcCCCCCCHHHHHHHH---------------
Q psy10472 66 T-------WLRG---------------NVIGLINQEPVLF-ATSVRENIRYGDSSVSDEQIEEAA--------------- 107 (181)
Q Consensus 66 ~-------~~r~---------------~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~--------------- 107 (181)
. .+|. ..+.|..++...+ ..|+.|++.|........+..+++
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 0 0110 0134444544433 458888886542111111111111
Q ss_pred --------------HHhc----cccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE----
Q psy10472 108 --------------KLAN----AHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL---- 164 (181)
Q Consensus 108 --------------~~~~----~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l---- 164 (181)
..+. ..-++.|+|+++||+...+.+.+.++++. +|.|+|+|||+++++..||+++.|
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~ 248 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEG 248 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCc
Confidence 1221 13456788999999999999999998865 589999999999998789999999
Q ss_pred --eCCeEEee
Q psy10472 165 --QAGQIVEM 172 (181)
Q Consensus 165 --~~G~i~~~ 172 (181)
++|++++.
T Consensus 249 g~~~G~iv~~ 258 (261)
T cd03271 249 GDGGGQVVAS 258 (261)
T ss_pred CCCCCEEEEe
Confidence 89999873
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=3.9e-22 Score=168.97 Aligned_cols=162 Identities=21% Similarity=0.306 Sum_probs=130.8
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc-cc
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA-TS 86 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~-~t 86 (181)
.++|+||++.+||+++|.|--|||+|-|+++|.|..++.+|+|.++|+++.-.++.+.-+..|+|||.+- .++. .+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 4789999999999999999999999999999999999999999999999887776654445799999975 5665 59
Q ss_pred HHHHhhcCCC-------CCCHH----HHHHHHHHhc------------------------------cccccccCCCCCCC
Q psy10472 87 VRENIRYGDS-------SVSDE----QIEEAAKLAN------------------------------AHGFISEFPSGALD 125 (181)
Q Consensus 87 v~enl~~~~~-------~~~~~----~~~~~~~~~~------------------------------~~~~~~~~P~~~LD 125 (181)
|.+|+.++.. ..+.. ..++..+.++ ..-++.|+||-++|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 9999977510 11111 1222222222 12256788999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~ 172 (181)
.-++.++++++++++ +|++||++|-++.++. .||||++|++|+++..
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999875 6999999999999886 5999999999999864
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.87 E-value=1.5e-21 Score=150.38 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=106.0
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHh----cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-----CC
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE----RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-----VL 82 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~----gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-----~l 82 (181)
....++++.+| +++|+|||||||||||++|. |...|..|.+..+...+.. . .. +..++++||++ ..
T Consensus 13 ~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~-~--~~-~~~v~~~f~~~~~~~~~v 87 (204)
T cd03240 13 HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-G--EV-RAQVKLAFENANGKKYTI 87 (204)
T ss_pred cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC-C--CC-cEEEEEEEEeCCCCEEEE
Confidence 34456778888 99999999999999999994 9989988877622222221 1 11 23499999987 33
Q ss_pred cc-ccHHHHhhcCCCC------------CC--H-HHHH-----HHHHH--hccccccccCCCCCCCHHHHH-HHHHHHHH
Q psy10472 83 FA-TSVRENIRYGDSS------------VS--D-EQIE-----EAAKL--ANAHGFISEFPSGALDNESEK-LVQAALES 138 (181)
Q Consensus 83 ~~-~tv~enl~~~~~~------------~~--~-~~~~-----~~~~~--~~~~~~~~~~P~~~LD~~~~~-~i~~~l~~ 138 (181)
.. .|+.+|+.+.... .+ . +++. .+++. ....-++.|+|+++||+..+. .+.+++.+
T Consensus 88 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 88 TRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred EEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 33 3899999765210 00 1 1110 11111 123446789999999999999 99999988
Q ss_pred hcC--CcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472 139 ACK--GRTVLMIAHRLSTVQNADLIVVLQAG 167 (181)
Q Consensus 139 ~~~--~~tii~vtHd~~~~~~~d~v~~l~~G 167 (181)
+.+ +.|+|++||+++.+..||+++.|++.
T Consensus 168 ~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 168 RKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred HHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 753 78999999999988779999999653
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=6.4e-22 Score=156.85 Aligned_cols=147 Identities=16% Similarity=0.260 Sum_probs=102.0
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCE-ECCCCCh-hhhccCcEEEEccCCC---------Ccc-
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGV-DLKHLDG-TWLRGNVIGLINQEPV---------LFA- 84 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~-~i~~~~~-~~~r~~~i~~v~q~~~---------l~~- 84 (181)
.+.+ .+++|+||||||||||+++|++++.|. .|++.+.+. ++..... ...+...++++||++. +.+
T Consensus 22 ~~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ 100 (251)
T cd03273 22 GFDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPE 100 (251)
T ss_pred cCCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCce
Confidence 4444 499999999999999999999999886 468888776 3322111 1123335999999852 223
Q ss_pred ccHHHHhhcCCC--------CCCHHHHHHHHHHhcc--------------------------------------------
Q psy10472 85 TSVRENIRYGDS--------SVSDEQIEEAAKLANA-------------------------------------------- 112 (181)
Q Consensus 85 ~tv~enl~~~~~--------~~~~~~~~~~~~~~~~-------------------------------------------- 112 (181)
.||.+|+.++.. ....+++.++++.+++
T Consensus 101 ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a 180 (251)
T cd03273 101 ITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI 180 (251)
T ss_pred EEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence 366666644311 0112233333333332
Q ss_pred ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 113 ---------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 113 ---------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
.-++.|+|+++||+..++.+.+.++++.+|.|+|+|||+.+....||+++-+.
T Consensus 181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 12345779999999999999999988777899999999987777899998875
No 376
>KOG0065|consensus
Probab=99.87 E-value=5.1e-22 Score=181.05 Aligned_cols=161 Identities=27% Similarity=0.412 Sum_probs=127.9
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
+.+++|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|.+..+ ..+++ .+|||.|+..-.+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R-~~GYvqQ~DiH~~ 877 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR-VSGYVEQQDIHSP 877 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc-ccceeecccccCc
Confidence 34679999999999999999999999999999999999743 347999999987643 33444 4999999886666
Q ss_pred c-cHHHHhhcCC-----CCCC---H-HHHHHHHHHhcccc----------------------------------ccccCC
Q psy10472 85 T-SVRENIRYGD-----SSVS---D-EQIEEAAKLANAHG----------------------------------FISEFP 120 (181)
Q Consensus 85 ~-tv~enl~~~~-----~~~~---~-~~~~~~~~~~~~~~----------------------------------~~~~~P 120 (181)
. ||+|-|.|.. ...+ + +.++++++.+++.. +..|+|
T Consensus 878 ~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence 4 9999998852 1111 2 44677777766543 235779
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhh--hcCCeEEEEeC-CeEEe
Q psy10472 121 SGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTV--QNADLIVVLQA-GQIVE 171 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~--~~~d~v~~l~~-G~i~~ 171 (181)
|+|||.+++-.+++.+++++ .|.||+.+-|.++.- +..|++++|++ |+.+.
T Consensus 958 TSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 958 TSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 99999999999999999876 599999999999753 56999999975 56665
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.86 E-value=3.9e-21 Score=165.89 Aligned_cols=145 Identities=23% Similarity=0.390 Sum_probs=122.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
...+++.||+|++||.+.|.||||||||||+|+|+|+.|.-+|+|.+-. ...+-|+||.|++..+|.+
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~------------~~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA------------DSALLFLPQRPYLPQGTLR 473 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC------------CCceEEecCCCCCCCccHH
Confidence 4689999999999999999999999999999999999999999886531 1237899999999999999
Q ss_pred HHhhcCCCC--CCHHHHHHHHHHhccccc-----------------------------------cccCCCCCCCHHHHHH
Q psy10472 89 ENIRYGDSS--VSDEQIEEAAKLANAHGF-----------------------------------ISEFPSGALDNESEKL 131 (181)
Q Consensus 89 enl~~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------------~~~~P~~~LD~~~~~~ 131 (181)
|-|.++... .+++++.+++..+++.++ ..|+.|++||++++..
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~ 553 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHH
Confidence 999998644 577888888888776553 2344789999999999
Q ss_pred HHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 132 VQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 132 i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
+++++++...+.|+|.|+|........++.+.+.
T Consensus 554 l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 554 LYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999998778999999999998877656555554
No 378
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=4e-20 Score=154.79 Aligned_cols=163 Identities=26% Similarity=0.411 Sum_probs=131.5
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC-CCCChhhhccCcEEEEccCC---CCc-c
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL-KHLDGTWLRGNVIGLINQEP---VLF-A 84 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i-~~~~~~~~r~~~i~~v~q~~---~l~-~ 84 (181)
..+++|||+|.+||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...+...+++..++|||.+. .+. .
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 568999999999999999999999999999999999999999999999997 66677777777899999986 344 4
Q ss_pred ccHHHHhhcCCCC---------CCHHHH----HHHHHHhccc------------------------------cccccCCC
Q psy10472 85 TSVRENIRYGDSS---------VSDEQI----EEAAKLANAH------------------------------GFISEFPS 121 (181)
Q Consensus 85 ~tv~enl~~~~~~---------~~~~~~----~~~~~~~~~~------------------------------~~~~~~P~ 121 (181)
.|+.||+.+.... .+...+ .+..+.++.. -++...||
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT 431 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence 6999999875321 112222 2333333221 02344599
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
.+||..+.+.+.+.|.+.+ +|++|+++|-|++++.. ||||.+|.+|+++..
T Consensus 432 rGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 432 RGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999988765 69999999999999865 999999999999863
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.85 E-value=9.3e-21 Score=146.81 Aligned_cols=155 Identities=18% Similarity=0.092 Sum_probs=98.2
Q ss_pred ceeeEEec-CCcEEEEECCCCCcHHHHHHHHhc-CCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc------c
Q psy10472 13 KDFNLRIP-AGQKVAIVGSSGNGKSTIVALLER-FYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF------A 84 (181)
Q Consensus 13 ~~isl~i~-~Ge~~~liG~nGsGKSTLl~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~------~ 84 (181)
.+++|+.. +|++++|+||||||||||+++|++ ++-+..+....+ .....+...... ..|+++||++... .
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~-~~v~~~f~~~~~~~~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDT-AEVSFTFQLGGKKYRVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCcc-EEEEEEEEECCeEEEEEEec
Confidence 45666544 488999999999999999999995 444444444432 111111111222 2489999986431 1
Q ss_pred -ccHHHHhh-----cC------CC---CCC---HHHHHHHHHHh-----------ccccccccCCCCCCCHHHHHHHHHH
Q psy10472 85 -TSVRENIR-----YG------DS---SVS---DEQIEEAAKLA-----------NAHGFISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 85 -~tv~enl~-----~~------~~---~~~---~~~~~~~~~~~-----------~~~~~~~~~P~~~LD~~~~~~i~~~ 135 (181)
.+..+... .+ .. ..+ .+++.-+...+ ...-++.|+|+++||+.+...+.+.
T Consensus 96 gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~ 175 (213)
T cd03279 96 GLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATA 175 (213)
T ss_pred CCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 12222211 01 00 011 11211111111 1234778999999999999999999
Q ss_pred HHHhcC-CcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472 136 LESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169 (181)
Q Consensus 136 l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i 169 (181)
+.++.+ +.|+|+|||+++.+.. ||+++++++|.+
T Consensus 176 l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 176 LELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 988754 8999999999998876 999999998853
No 380
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=1e-20 Score=148.96 Aligned_cols=149 Identities=22% Similarity=0.320 Sum_probs=98.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHh----------------cCCCCCcc--------eEEECCEECC-CC-
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE----------------RFYDVSSG--------NITISGVDLK-HL- 63 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~----------------gl~~p~~G--------~i~i~g~~i~-~~- 63 (181)
.++.+++ |++++|+||||||||||+++|+ +++.+.+| +|.+++.+-. ..
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~ 90 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID 90 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence 3555554 7899999999999999999998 44555566 6666553210 11
Q ss_pred -ChhhhccCcEEEEccCCCCccc--cHHHHhhc----CCCC----------------------------CC---HHHHHH
Q psy10472 64 -DGTWLRGNVIGLINQEPVLFAT--SVRENIRY----GDSS----------------------------VS---DEQIEE 105 (181)
Q Consensus 64 -~~~~~r~~~i~~v~q~~~l~~~--tv~enl~~----~~~~----------------------------~~---~~~~~~ 105 (181)
.....++ .+++++|++.+++. |..+...+ +... .+ ++++ .
T Consensus 91 ~~~~~i~r-~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~-~ 168 (243)
T cd03272 91 KEEVRLRR-TIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLV-A 168 (243)
T ss_pred CCEEEEEE-EEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHH-H
Confidence 1112333 38999998877652 55443221 1000 00 1111 1
Q ss_pred HHHHh-----c-cccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 106 AAKLA-----N-AHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 106 ~~~~~-----~-~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
+...+ . ..-++.|+|+++||+.+++.+++.++++.+++++|++||+.+....||++++|.
T Consensus 169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 11222 1 245678999999999999999999988766889999999977666699999985
No 381
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.9e-20 Score=142.60 Aligned_cols=163 Identities=23% Similarity=0.310 Sum_probs=124.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCEECCCCChhhhcc---CcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV----SSGNITISGVDLKHLDGTWLRG---NVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~---~~i~~v~q~~~ 81 (181)
..+++++|+++++||+-+++|.||||||-..|.|+|..+- +.-+..+++.++.++++.+.|+ +.|+++||+|.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 3589999999999999999999999999999999999764 4566778888888887765442 34889999995
Q ss_pred C--cc-ccHH----HHhhcCCC--------CCCHHHHHHHHHHhcccc--------------------------------
Q psy10472 82 L--FA-TSVR----ENIRYGDS--------SVSDEQIEEAAKLANAHG-------------------------------- 114 (181)
Q Consensus 82 l--~~-~tv~----enl~~~~~--------~~~~~~~~~~~~~~~~~~-------------------------------- 114 (181)
- -+ .+|. +||-+... ...+.+..+.+..+|..+
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrL 179 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCce
Confidence 3 33 2543 44432110 112333444555554432
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++.++||+++|+.++.+++.++..+. +|+||++++||+..+.. ||++-+|.-|+-++
T Consensus 180 LIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 180 LIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred EeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 46788999999999999999998865 48999999999999965 99999999998777
No 382
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.82 E-value=1.2e-20 Score=144.84 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=93.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+.++++++|+ .|++++|+||||||||||+|+|+|... +.+.|.++.. -.+++|...+|.. |+
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a----------~~~~~q~~~l~~~~~~ 76 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA----------SSFELPPVKIFTSIRV 76 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec----------CccCcccceEEEeccc
Confidence 3466777655 579999999999999999999988543 2235544321 1356675567765 99
Q ss_pred HHHhhcCCCCC--CHHHHHHHHHHhc---cccccccCCCCCCCHHHHHHHH-HHHHHhc-CCcEEEEEecCchhhhc
Q psy10472 88 RENIRYGDSSV--SDEQIEEAAKLAN---AHGFISEFPSGALDNESEKLVQ-AALESAC-KGRTVLMIAHRLSTVQN 157 (181)
Q Consensus 88 ~enl~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~P~~~LD~~~~~~i~-~~l~~~~-~~~tii~vtHd~~~~~~ 157 (181)
.||+.++.... ...++.++++.++ ..-++.|+|++++|+.....+. .+++.+. .+.++|++||+++.+..
T Consensus 77 ~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 77 SDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred hhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 99998875322 1234566666666 2346689999999999887654 4566553 48999999999998753
No 383
>KOG0927|consensus
Probab=99.82 E-value=1.7e-20 Score=158.31 Aligned_cols=152 Identities=22% Similarity=0.277 Sum_probs=118.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcccc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFATS 86 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~t 86 (181)
.++++++|-|..++.+++|||||||||||||++.|.+.|..|.|.-.-+. .+++.-|+. ..+..+
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------------~~~~y~Qh~~e~ldl~~s 471 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------------KLPRYNQHLAEQLDLDKS 471 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------------cchhhhhhhHhhcCcchh
Confidence 47889999999999999999999999999999999999999988644322 134444443 223447
Q ss_pred HHHHhhcCCC-CCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 87 VRENIRYGDS-SVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 87 v~enl~~~~~-~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
..|++.-... ....+.+..++..+++.+ ++.|+||++||.++...+.+.
T Consensus 472 ~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea 551 (614)
T KOG0927|consen 472 SLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551 (614)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH
Confidence 7777754333 245566777777776653 356789999999999999999
Q ss_pred HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
|..+. .++|+||||...+.. ++++++..+|.+..+.|.
T Consensus 552 iNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 552 INEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred HhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCcc
Confidence 98774 579999999999976 999999999988775553
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=5.2e-21 Score=148.18 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=47.5
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472 113 HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 113 ~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~ 166 (181)
.-++.|+|+++||+.++..+++.++++.++.|+|++||+.+....||++++|..
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 456789999999999999999999988778899999999776677999999964
No 385
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.81 E-value=4.4e-20 Score=127.45 Aligned_cols=77 Identities=22% Similarity=0.159 Sum_probs=67.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.++..++....++ .+++++|+ +|+.|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~-~~~~~~q~--lf~~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDE-LIGRNPEL--GLEIRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCC-EEEEechh--cchhhHH
Confidence 45899999999999999999999999999999986 899999999988776555443 47788887 8889999
Q ss_pred HHhhcC
Q psy10472 89 ENIRYG 94 (181)
Q Consensus 89 enl~~~ 94 (181)
|||.++
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999875
No 386
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.80 E-value=1.4e-19 Score=138.92 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=92.6
Q ss_pred cceeeEEecCCc-EEEEECCCCCcHHHHHHHHh--------cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472 12 LKDFNLRIPAGQ-KVAIVGSSGNGKSTIVALLE--------RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 12 l~~isl~i~~Ge-~~~liG~nGsGKSTLl~~l~--------gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l 82 (181)
+-++||++.+|+ +++|+||||||||||||+|+ |.+-|....+ .++|+.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------------------~~~~~~~~~~~ 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------------------SLPVFENIFAD 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------------------cCcCccEEEEe
Confidence 447899999995 79999999999999999999 6555532211 13333333222
Q ss_pred cc--ccHHHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhc
Q psy10472 83 FA--TSVRENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQN 157 (181)
Q Consensus 83 ~~--~tv~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~-~l~~~~-~~~tii~vtHd~~~~~~ 157 (181)
+. .++.+++.... ....+...++..+ +..-++.|+|++++|+..+..+.. .++.+. .+.++|++||+.+....
T Consensus 79 lg~~~~l~~~~s~fs--~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~ 156 (200)
T cd03280 79 IGDEQSIEQSLSTFS--SHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAY 156 (200)
T ss_pred cCchhhhhcCcchHH--HHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHH
Confidence 21 13333331110 1112223333322 233467899999999999888864 566654 48999999999766566
Q ss_pred CCeEEEEeCCeEEe
Q psy10472 158 ADLIVVLQAGQIVE 171 (181)
Q Consensus 158 ~d~v~~l~~G~i~~ 171 (181)
||+++.|++|++..
T Consensus 157 ~d~~~~l~~g~l~~ 170 (200)
T cd03280 157 AYKREGVENASMEF 170 (200)
T ss_pred HhcCCCeEEEEEEE
Confidence 99999999999875
No 387
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=4.2e-18 Score=161.45 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=53.0
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe------CCeEEeecCCch
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMLGQHE 177 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~------~G~i~~~~~~~~ 177 (181)
++.|+|+++||+...+.++++|+++. +|.|||+|||+++.+..||++++|. +|+++. .++++
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~-~Gtpe 902 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLA-SCSPE 902 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEE-eCCHH
Confidence 56678999999999999999998865 5899999999999996699999996 788887 34443
No 388
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.77 E-value=2.7e-18 Score=156.21 Aligned_cols=63 Identities=33% Similarity=0.495 Sum_probs=54.6
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCch
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHE 177 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~ 177 (181)
-++.|+|+++||+..+..+++.|+++. +|.|||+|||+++.+..||+++.| ++|+++. .++++
T Consensus 854 llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~-~Gt~~ 923 (943)
T PRK00349 854 LYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVA-TGTPE 923 (943)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEE-eCCHH
Confidence 356788999999999999999998874 589999999999998779999999 6899987 45443
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=4.1e-18 Score=134.79 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=46.8
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhcCCeEEEEeC
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~~~~~d~v~~l~~ 166 (181)
-++.|+|+++||+..+..+.+.+.++.+ |.++|+|||+.+.+..||++++|..
T Consensus 180 ~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 180 FFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 4567899999999999999999998754 8999999999888877999999864
No 390
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.75 E-value=9.9e-18 Score=133.95 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=95.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-hhhhccCcEEEEccCCCCccccHHHHhhcCCCCCCHH
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDE 101 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~ 101 (181)
.-++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++... ++++||+......+|.+|.. ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~------k~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGC-VNGVPQHDVGIRTDVLDGCP------KAE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHH-hcccccccccccccccccch------HHH
Confidence 568999999999999999999999999999999999987543 2344443 78888865332347776631 122
Q ss_pred HHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchh--h------------hcCCeEEEEeCC
Q psy10472 102 QIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLST--V------------QNADLIVVLQAG 167 (181)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~--~------------~~~d~v~~l~~G 167 (181)
.+..++......-++.|+|.. .+.+..+++.+..|.++|++||+... + ..++|+++|++|
T Consensus 185 ~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 344555555666677888763 34455555555569999999997665 3 227999999876
Q ss_pred e
Q psy10472 168 Q 168 (181)
Q Consensus 168 ~ 168 (181)
+
T Consensus 259 ~ 259 (270)
T TIGR02858 259 K 259 (270)
T ss_pred C
Confidence 4
No 391
>KOG2355|consensus
Probab=99.72 E-value=7.4e-17 Score=122.48 Aligned_cols=160 Identities=23% Similarity=0.379 Sum_probs=109.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-----------hhhccCcEEEEc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-----------TWLRGNVIGLIN 77 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-----------~~~r~~~i~~v~ 77 (181)
.|++-|+|++++.|....++|.||||||||||+|+|-.-...|.|.+.|.+-..-.. .+|.+. +++--
T Consensus 27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~-~~~ag 105 (291)
T KOG2355|consen 27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKT-VGIAG 105 (291)
T ss_pred CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEeccccccc-ccccc
Confidence 478999999999999999999999999999999999876677999999976432110 112211 22111
Q ss_pred cCCCCcc-ccHHHHhhcCCCCCCHHHHHHHHHHhc-----------------------c---c-cccccCCCCCCCHHHH
Q psy10472 78 QEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLAN-----------------------A---H-GFISEFPSGALDNESE 129 (181)
Q Consensus 78 q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~-----------------------~---~-~~~~~~P~~~LD~~~~ 129 (181)
+..+-. .++.+ +.|+-...+.++.++..+.+. + . -++.++-|-.||...+
T Consensus 106 -evplq~D~sae~-mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlAR 183 (291)
T KOG2355|consen 106 -EVPLQGDISAEH-MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLAR 183 (291)
T ss_pred -cccccccccHHH-HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHH
Confidence 111111 24433 333322222233233332221 1 1 1345667789999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 130 KLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
..+++.++... +|+|||++||-.+-++. +.+++.|+.|+++.
T Consensus 184 adLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 184 ADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999998754 59999999999987755 99999999999976
No 392
>KOG0060|consensus
Probab=99.72 E-value=7.8e-17 Score=137.22 Aligned_cols=148 Identities=21% Similarity=0.336 Sum_probs=116.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
..+.+|+||+|+.|+-+.|.||||||||+|+|+++|+.+-.+|++.--...- + +.+-|+||.|.+--+|.+
T Consensus 448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~-----~~lfflPQrPYmt~GTLR 518 (659)
T KOG0060|consen 448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----P-----KDLFFLPQRPYMTLGTLR 518 (659)
T ss_pred ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----C-----CceEEecCCCCccccchh
Confidence 3477889999999999999999999999999999999999999987543210 0 238899999998888999
Q ss_pred HHhhcCCC-------CCCHHHHHHHHHHhccccc----------------------------------------cccCCC
Q psy10472 89 ENIRYGDS-------SVSDEQIEEAAKLANAHGF----------------------------------------ISEFPS 121 (181)
Q Consensus 89 enl~~~~~-------~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~ 121 (181)
|.+.|+.. ..+++++.+.++.+++..+ +.|+-|
T Consensus 519 dQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T 598 (659)
T KOG0060|consen 519 DQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECT 598 (659)
T ss_pred heeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence 99999832 2345566666665543332 234467
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472 122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG 167 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G 167 (181)
+++|.+.+..+.+.+++. |.|.|-|+|..+..+.=|.++.|+.+
T Consensus 599 SAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 599 SAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred hhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 889988888888887654 89999999999988878888888753
No 393
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=3e-18 Score=131.68 Aligned_cols=145 Identities=16% Similarity=0.131 Sum_probs=92.2
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC-CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHh
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF-YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENI 91 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl 91 (181)
-..++++.+|++++|+|||||||||||++|++. +.+..|.... . . +. .+++..|....+ ...+++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~---------~-~~-~i~~~dqi~~~~--~~~d~i 85 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A---------E-SA-SIPLVDRIFTRI--GAEDSI 85 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c---------c-cc-ccCCcCEEEEEe--cCcccc
Confidence 345677889999999999999999999999943 3333342211 1 0 11 244443332222 233333
Q ss_pred hcCCCCC--CHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472 92 RYGDSSV--SDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 92 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~-~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~ 166 (181)
..+.... ...++..++..+ +..-++.|+|++++|+.....+.. +++.+. .+.++|++||+.+.+..|+++..++.
T Consensus 86 ~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~ 165 (202)
T cd03243 86 SDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKN 165 (202)
T ss_pred cCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEE
Confidence 3221111 122333444332 234467899999999998776654 455543 48999999999988888889888888
Q ss_pred CeEEe
Q psy10472 167 GQIVE 171 (181)
Q Consensus 167 G~i~~ 171 (181)
+++..
T Consensus 166 ~~~~~ 170 (202)
T cd03243 166 LHMEE 170 (202)
T ss_pred EEEEE
Confidence 88765
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=4.6e-17 Score=124.87 Aligned_cols=155 Identities=17% Similarity=0.111 Sum_probs=97.0
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc--c----
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA--T---- 85 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~--~---- 85 (181)
++++++++.+| +.+|+||||||||||+.+|...+..... ....|..+..+-........|.+.||+..++. .
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 89 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLS 89 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHH
Confidence 47788888887 8899999999999999999754433221 11112211110000001124888898865543 1
Q ss_pred --cHHHHhhcCCC------CCC---HHHHHHHHHH-----hccccccccCCCCCCCHHHHHHHHHHHHHh-cC---CcEE
Q psy10472 86 --SVRENIRYGDS------SVS---DEQIEEAAKL-----ANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTV 145 (181)
Q Consensus 86 --tv~enl~~~~~------~~~---~~~~~~~~~~-----~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~-~~---~~ti 145 (181)
.+.+-+..... ..+ ++++.-+... .+..-++.|+|+++||+..+..+.+.|.+. .+ +.||
T Consensus 90 ~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~i 169 (198)
T cd03276 90 QDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFI 169 (198)
T ss_pred HHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 22233333110 011 1222111111 244557789999999999999999998775 32 3689
Q ss_pred EEEecCchhhhcCCeEEEEeCCe
Q psy10472 146 LMIAHRLSTVQNADLIVVLQAGQ 168 (181)
Q Consensus 146 i~vtHd~~~~~~~d~v~~l~~G~ 168 (181)
|++||+++.+..+|+|.+|..++
T Consensus 170 ii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 170 FITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred EEECCcccccccccceeEEEecC
Confidence 99999999998889999998764
No 395
>KOG0066|consensus
Probab=99.71 E-value=7.2e-17 Score=134.30 Aligned_cols=150 Identities=24% Similarity=0.281 Sum_probs=105.9
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA- 84 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~- 84 (181)
.++++..++|-|.-...+||+||||.||||||++|.|-+.|+.|+..=+- |- +||+.-|... |-.
T Consensus 599 qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL-~iG~FdQh~~E~L~~E 666 (807)
T KOG0066|consen 599 QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RL-RIGWFDQHANEALNGE 666 (807)
T ss_pred CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------ee-eeechhhhhHHhhccc
Confidence 36788999999999999999999999999999999999999999764321 12 3888888653 222
Q ss_pred ccHHHHhhcCCCC--------------------------CCHHHHHHHHHHh---ccccccccCCCCCCCHHHHHHHHHH
Q psy10472 85 TSVRENIRYGDSS--------------------------VSDEQIEEAAKLA---NAHGFISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 85 ~tv~enl~~~~~~--------------------------~~~~~~~~~~~~~---~~~~~~~~~P~~~LD~~~~~~i~~~ 135 (181)
.|..|.+.-.... ...+..+-++..+ +.+-++.++||++||.++...+.+.
T Consensus 667 etp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEA 746 (807)
T KOG0066|consen 667 ETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEA 746 (807)
T ss_pred cCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHH
Confidence 3666665321100 0011111122111 2334678999999999999999999
Q ss_pred HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
|+.+. ..|||||||-..+.. --..|++++-.|-+
T Consensus 747 Iney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 747 INEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred HHhcc--CcEEEEecccceeeecCceEEEEccCChhh
Confidence 98874 469999999998855 34567777765644
No 396
>KOG0062|consensus
Probab=99.70 E-value=7.7e-17 Score=135.69 Aligned_cols=151 Identities=19% Similarity=0.292 Sum_probs=115.8
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc--c
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT--S 86 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~--t 86 (181)
+++.++++++..-+.++++|+||+||||++|++.+-..|..|.+.+.+ |. +|+|.+|... .+.. +
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~-ri~~f~Qhhvd~l~~~v~ 445 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL-RIKYFAQHHVDFLDKNVN 445 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc-eecchhHhhhhHHHHHhH
Confidence 578889999999999999999999999999999999999999887654 22 3899999753 2332 2
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
..+.++-..+...++++++.+..+|+.+ ++.|+||+.||.++-..+-+.|
T Consensus 446 ~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al 525 (582)
T KOG0062|consen 446 AVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKAL 525 (582)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHH
Confidence 3333322222234555666555554432 4678899999999999999999
Q ss_pred HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472 137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG 174 (181)
Q Consensus 137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~ 174 (181)
+.+. ..||+||||.+++.. |+.+|+.++|++....+
T Consensus 526 ~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 526 KNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred HhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeec
Confidence 8875 469999999999977 99999999999975333
No 397
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.70 E-value=4e-16 Score=132.09 Aligned_cols=159 Identities=22% Similarity=0.305 Sum_probs=114.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE---CCC-----CChhhhccCcEEEEccC-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---LKH-----LDGTWLRGNVIGLINQE- 79 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~---i~~-----~~~~~~r~~~i~~v~q~- 79 (181)
..+++++ |.+.+|++++|+|+||+|||||+++|+++.+|+.|.|.+.|+. +.. ++...++ +.+.++.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~-r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLK-RSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhc-CeEEEEECCC
Confidence 3578999 9999999999999999999999999999999999999996544 332 2222233 348888653
Q ss_pred -CCC------ccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhc---CC
Q psy10472 80 -PVL------FAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESAC---KG 142 (181)
Q Consensus 80 -~~l------~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~---~~ 142 (181)
|.. +.. |+.|++.--... .+-.+...|.+.+.+ ...+.| +.++|+.....+.+++++.. +|
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl--~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGL--AVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHH--hcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 321 222 566776422111 123344455554433 223444 57999999999999998765 47
Q ss_pred c-----EEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 143 R-----TVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 143 ~-----tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
. ||++.+||++. ..||++..+.+|+++..
T Consensus 302 sIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls 335 (438)
T PRK07721 302 SITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLD 335 (438)
T ss_pred CeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEe
Confidence 5 99999999985 55999999999999873
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=7.3e-17 Score=134.43 Aligned_cols=142 Identities=25% Similarity=0.372 Sum_probs=101.9
Q ss_pred cccceeeEEec-----CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc
Q psy10472 10 TILKDFNLRIP-----AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF 83 (181)
Q Consensus 10 ~vl~~isl~i~-----~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~ 83 (181)
..+.+..|++. .||+++++||||-||||+.++|+|.++|++|. ..++ .++|=||--. -|
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-----------~vSyKPQyI~~~~ 414 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-----------KVSYKPQYISPDY 414 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-----------eEeecceeecCCC
Confidence 34566777665 47889999999999999999999999999997 1111 2677777532 25
Q ss_pred cccHHHHhhcCCCC------------------------------CCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHH
Q psy10472 84 ATSVRENIRYGDSS------------------------------VSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLV 132 (181)
Q Consensus 84 ~~tv~enl~~~~~~------------------------------~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i 132 (181)
++||.+.+.-..+. ..-+++.-++.+. .++-++.++|++.||.+.+..+
T Consensus 415 ~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 415 DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred CCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 66887776432110 0012222222221 2233567899999999999999
Q ss_pred HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
.+.|++.. .++|.++|.||+-.+.+ +||+++++.
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999864 47999999999999988 999999963
No 399
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.7e-16 Score=144.42 Aligned_cols=64 Identities=31% Similarity=0.479 Sum_probs=55.3
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCchh
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHEN 178 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~~ 178 (181)
-++.|+|+++||+...+.+++.++++. +|.|||++||+++.+..||+++.| ++|+++. .+++++
T Consensus 852 llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~-~G~~~~ 922 (924)
T TIGR00630 852 LYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVA-SGTPEE 922 (924)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEE-eCCHHH
Confidence 356788999999999999999998875 589999999999998779999999 7999987 455443
No 400
>KOG0927|consensus
Probab=99.69 E-value=9.1e-17 Score=135.93 Aligned_cols=167 Identities=15% Similarity=0.211 Sum_probs=101.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC--CEECCCCChhhhccCcEEEEccCC------
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLKHLDGTWLRGNVIGLINQEP------ 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~--g~~i~~~~~~~~r~~~i~~v~q~~------ 80 (181)
..+++|+.|++.+|+.++|+|+|||||||+|++|.|-..|..-++.+. .+++..-...... ..+-..++..
T Consensus 88 ~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~-~v~~~~~~e~~rle~~ 166 (614)
T KOG0927|consen 88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ-AVVMETDHERKRLEYL 166 (614)
T ss_pred ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH-HHhhhhHHHHHHHHHH
Confidence 468999999999999999999999999999999999998866555432 2222110000000 0000000000
Q ss_pred ----CC----cc---c-cHHHHhhcCCCC---------------------------CCHHHHHHHHHH--h-cccccccc
Q psy10472 81 ----VL----FA---T-SVRENIRYGDSS---------------------------VSDEQIEEAAKL--A-NAHGFISE 118 (181)
Q Consensus 81 ----~l----~~---~-tv~enl~~~~~~---------------------------~~~~~~~~~~~~--~-~~~~~~~~ 118 (181)
.. +. . ++++-+..-... ....+.+.++.. + ...-++.|
T Consensus 167 ~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD 246 (614)
T KOG0927|consen 167 AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD 246 (614)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec
Confidence 00 00 0 111111000000 000111111111 1 11224678
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472 119 FPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 119 ~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~ 177 (181)
+||++||+++..-+.+.|..+.+. ++|+++|+.+++.. |.+|+.|++++.+.+.|+.+
T Consensus 247 EPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 247 EPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred CCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence 899999999999999999877544 89999999999966 99999999999877666543
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.69 E-value=2.3e-16 Score=130.31 Aligned_cols=152 Identities=24% Similarity=0.386 Sum_probs=101.1
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--------CCCCcceEEECCEECCCCChhhhccCcEEEEccC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--------YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQE 79 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--------~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~ 79 (181)
...+++|+||+|++|++++|+|+|||||||||++|+|. ++|++|.|.+--..++ +++|-+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~------------a~iPge 462 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS------------ALIPGE 462 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh------------hccCcc
Confidence 45699999999999999999999999999999999986 6799998876432221 223322
Q ss_pred C-CCccc-cHHHHhhcCC-----------------------C----CCCHHHHHHHHHHh--ccccccccCCCCCCCHHH
Q psy10472 80 P-VLFAT-SVRENIRYGD-----------------------S----SVSDEQIEEAAKLA--NAHGFISEFPSGALDNES 128 (181)
Q Consensus 80 ~-~l~~~-tv~enl~~~~-----------------------~----~~~~~~~~~~~~~~--~~~~~~~~~P~~~LD~~~ 128 (181)
. .-|.. |+.|.+.--. + ...+.+-.++++++ +..-++.|+-.+.||+.+
T Consensus 463 ~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T 542 (593)
T COG2401 463 YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT 542 (593)
T ss_pred cccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH
Confidence 1 11222 4444432110 0 00111111111111 111234455567999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEecCchhhhc--CCeEEEEeCCeEEe
Q psy10472 129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~ 171 (181)
...+..-+..++ .|.|++++||+++.... -|.++.+.-|+...
T Consensus 543 A~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 543 AVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 999999998876 39999999999999843 79999998776543
No 402
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.68 E-value=8.7e-17 Score=124.92 Aligned_cols=147 Identities=15% Similarity=0.149 Sum_probs=95.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
..+.++++|+.++ ++++|+||||||||||||++++..-... .|.. .+.. . ..++++.| +|+. ++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~-----~g~~---vp~~--~-~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQ-----IGSF---VPAS--K-AEIGVVDR---IFTRIGA 82 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhc-----cCCe---eccc--c-ceecceee---EeccCCc
Confidence 3488999999887 8999999999999999999987542210 1111 1111 1 23777765 4554 88
Q ss_pred HHHhhcCCCCCCH--HHHHHHHHHh-ccccccccCC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEEecCchhhhcCCe
Q psy10472 88 RENIRYGDSSVSD--EQIEEAAKLA-NAHGFISEFP---SGALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQNADL 160 (181)
Q Consensus 88 ~enl~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~P---~~~LD~~~~-~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~ 160 (181)
.+|+..+...... .++..++..+ +..-++.|+| |+++|.... ..+.+.+.+. .+.++|++||+.+....+|+
T Consensus 83 ~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~ 161 (216)
T cd03284 83 SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGK 161 (216)
T ss_pred hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhc
Confidence 9999887533221 2334444433 2334568999 888887542 3344444221 37899999999876666777
Q ss_pred EEEEeCCeEEe
Q psy10472 161 IVVLQAGQIVE 171 (181)
Q Consensus 161 v~~l~~G~i~~ 171 (181)
+..+.+|++..
T Consensus 162 ~~~v~~~~~~~ 172 (216)
T cd03284 162 LPRVKNFHVAV 172 (216)
T ss_pred CCCeEEEEEEE
Confidence 76667776643
No 403
>KOG0064|consensus
Probab=99.66 E-value=5.7e-16 Score=131.01 Aligned_cols=141 Identities=24% Similarity=0.396 Sum_probs=101.9
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
.++..++|+|++|--..|+||||||||+|+|+|.|+.|...|...+ + +...|-|+||.|+.--+|.+|
T Consensus 496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P----~~~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------P----RPNNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------C----CCcceEeccCCCccCcCcccc
Confidence 3778899999999999999999999999999999999986665543 1 112389999999877679999
Q ss_pred HhhcCC-------CCCCHHHHHHHHHHhccccccc--------------------------------------cCCCCCC
Q psy10472 90 NIRYGD-------SSVSDEQIEEAAKLANAHGFIS--------------------------------------EFPSGAL 124 (181)
Q Consensus 90 nl~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~P~~~L 124 (181)
.+-++. +...+++++.+++.+.+..++. |+-|++.
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAv 643 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAV 643 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence 998874 2345666667766654433221 1234455
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE
Q psy10472 125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 164 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l 164 (181)
.++.+..+.+..+.. |.+.|-|||.+.....-.+.+-.
T Consensus 644 sidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 644 SIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred ccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 555556666665443 89999999999987754444433
No 404
>KOG0065|consensus
Probab=99.65 E-value=1.1e-15 Score=140.06 Aligned_cols=164 Identities=25% Similarity=0.341 Sum_probs=127.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC---CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV---SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p---~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~ 85 (181)
.++|+|++.-+++|+.+.++||.||||||||++++|-..- ..|+|.+||.+.....+ ++.++|++|+...++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~----~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP----KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc----CceEEeccccccccce
Confidence 4699999999999999999999999999999999998653 25699999998766543 3459999999988875
Q ss_pred -cHHHHhhcCCCC------C---CHH-----HHHHHHHHhccccc----------------------------------c
Q psy10472 86 -SVRENIRYGDSS------V---SDE-----QIEEAAKLANAHGF----------------------------------I 116 (181)
Q Consensus 86 -tv~enl~~~~~~------~---~~~-----~~~~~~~~~~~~~~----------------------------------~ 116 (181)
||+|-+.|..+. . .+. ..+.+++.+|+..- .
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 999999886311 1 111 12356666665431 1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchh-h-hcCCeEEEEeCCeEEeecCCch
Q psy10472 117 SEFPSGALDNESEKLVQAALESACK--GRTVLMIAHRLST-V-QNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 117 ~~~P~~~LD~~~~~~i~~~l~~~~~--~~tii~vtHd~~~-~-~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
-|+++.|||..+.-++.+.++.+.+ +.|.+++-|.+.. + ...|.|++|.+|+++. .++.+
T Consensus 284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy-~Gp~d 347 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY-QGPRD 347 (1391)
T ss_pred eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE-eccHH
Confidence 2447889999999999999998764 8899999888754 3 4599999999999998 45543
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.64 E-value=2.6e-15 Score=113.39 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=89.6
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-----ceEEECCEECCCCChhhhccCcEEEEccCCC-Cc-c
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF-A 84 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-----G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~-~ 84 (181)
+.+..+...++.+.+|+||||||||++|.+|.-..--.+ +.-.+...+..... . ....|.+.|.+.. ++ .
T Consensus 12 ~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~f~~~~~~~~~ 88 (178)
T cd03239 12 YRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAG--I-NSASVEITFDKSYFLVLQ 88 (178)
T ss_pred CCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCC--C-ceEEEEEEEECceEEecC
Confidence 345555554445999999999999999999864432111 11000001111111 1 1113667776652 23 2
Q ss_pred ccHHHHhhcCCCCCCHHHHH--HHHHH---hccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcC
Q psy10472 85 TSVRENIRYGDSSVSDEQIE--EAAKL---ANAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNA 158 (181)
Q Consensus 85 ~tv~enl~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~ 158 (181)
+...+.+.-+ ..+++. .++.. ....-++.|+|+++||+..++.+.+.+.++. +|.++|++||+++.+..+
T Consensus 89 ~~~~~~LS~G----e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~a 164 (178)
T cd03239 89 GKVEQILSGG----EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENA 164 (178)
T ss_pred CcCcccCCHH----HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhC
Confidence 3333332211 122221 12111 1334467899999999999999999998764 469999999999988779
Q ss_pred CeEEEEeC
Q psy10472 159 DLIVVLQA 166 (181)
Q Consensus 159 d~v~~l~~ 166 (181)
|+++.+..
T Consensus 165 drvi~i~~ 172 (178)
T cd03239 165 DKLIGVLF 172 (178)
T ss_pred CeEEEEEE
Confidence 99999975
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=4.2e-15 Score=119.48 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=50.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472 111 NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG 167 (181)
Q Consensus 111 ~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G 167 (181)
...-++.|+|+++||+..+..+.+.+....++.|+|++||++.....||+++.|.+|
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 444567899999999999999999998877789999999999977779999999876
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=1.8e-15 Score=117.94 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=84.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCcc---
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFA--- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~--- 84 (181)
+.+.+|++++++++++++|.||||+|||||+++++-.. + +. + +| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~------------la-~-~g~~vpa~~~~~~~~~ 74 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV--------L------------MA-Q-IGCFVPCDSADIPIVD 74 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH--------H------------HH-H-hCCCcCcccEEEeccc
Confidence 46899999999999999999999999999999987210 0 00 0 22 3333221111
Q ss_pred ----c-cHHHHhhcCCCCCCHH--HHHHHHHHhc-cccccccCC---CCCCCHHHHHHHH-HHHHHhcCCcEEEEEecCc
Q psy10472 85 ----T-SVRENIRYGDSSVSDE--QIEEAAKLAN-AHGFISEFP---SGALDNESEKLVQ-AALESACKGRTVLMIAHRL 152 (181)
Q Consensus 85 ----~-tv~enl~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~P---~~~LD~~~~~~i~-~~l~~~~~~~tii~vtHd~ 152 (181)
. ...+.+.-+.+....+ ++..+++.+. ..-++.|+| |+++|+....... +.+.+ ..+.++|++||+.
T Consensus 75 ~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~ 153 (222)
T cd03285 75 CILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFH 153 (222)
T ss_pred eeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechH
Confidence 0 0111111111111122 2223333222 234568999 8889998764322 43432 2478999999975
Q ss_pred hhhhcCCeEEEEeCCeEEe
Q psy10472 153 STVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 153 ~~~~~~d~v~~l~~G~i~~ 171 (181)
+....||++..+++|++..
T Consensus 154 el~~~~~~~~~i~~g~~~~ 172 (222)
T cd03285 154 ELTALADEVPNVKNLHVTA 172 (222)
T ss_pred HHHHHhhcCCCeEEEEEEE
Confidence 5555699999999999865
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.59 E-value=9.6e-15 Score=108.56 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=85.9
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCccccHHHHh
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFATSVRENI 91 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~~tv~enl 91 (181)
...++.+.++.+++|+|||||||||+++++....-..+|.+.... .. + .+ ++++....| +....
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~-~----------~g~~~~~~~~~~---i~~~~ 76 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV-K----------AGCIVAAVSAEL---IFTRL 76 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc-c----------CCCcceeeEEEE---ehhee
Confidence 344555666679999999999999999998877655555443311 10 0 11 111111000 00011
Q ss_pred hcCCCCCCHHHHHHHHHHh------ccccccccCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCchhhhcCCeEEEE
Q psy10472 92 RYGDSSVSDEQIEEAAKLA------NAHGFISEFPSGALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVL 164 (181)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~P~~~LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~~~~~~d~v~~l 164 (181)
.+ .....+...+.+.+ ...-++.|+|++++|+.....+.+.+.+. .++.++|++||+++....+|+++.|
T Consensus 77 ~l---S~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l 153 (162)
T cd03227 77 QL---SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHI 153 (162)
T ss_pred ec---cccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEE
Confidence 11 11122222222222 22446789999999999999999988765 3478999999999998889999998
Q ss_pred eC
Q psy10472 165 QA 166 (181)
Q Consensus 165 ~~ 166 (181)
+.
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 64
No 409
>KOG0062|consensus
Probab=99.59 E-value=6.6e-16 Score=130.12 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=103.3
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE--CCCC---------ChhhhccCcEEE
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD--LKHL---------DGTWLRGNVIGL 75 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~--i~~~---------~~~~~r~~~i~~ 75 (181)
+.+.+|++-++++..|-.++|+|+||+|||||||+|+. |.|.....+ +... .....| .-+
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~---~df 161 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTER---LDF 161 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHH---HHH
Confidence 34678999999999999999999999999999999997 333332211 1000 000111 235
Q ss_pred EccCCCCccc-cH---HHHhhcCCC------------CCCHHHHHHHHHH---hccccccccCCCCCCCHHHHHHHHHHH
Q psy10472 76 INQEPVLFAT-SV---RENIRYGDS------------SVSDEQIEEAAKL---ANAHGFISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 76 v~q~~~l~~~-tv---~enl~~~~~------------~~~~~~~~~~~~~---~~~~~~~~~~P~~~LD~~~~~~i~~~l 136 (181)
+.++..+... +. ..++..+.. .....+++-++.. ...+-++.|+||+.||..+..-+...|
T Consensus 162 l~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL 241 (582)
T KOG0062|consen 162 LAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYL 241 (582)
T ss_pred HHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHH
Confidence 5566544433 32 232322211 0111222222221 233456789999999999999999998
Q ss_pred HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
..+. .|+|+||||-.++.. |.-|+.+++-++-.+.|.
T Consensus 242 ~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN 279 (582)
T KOG0062|consen 242 QTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGN 279 (582)
T ss_pred hhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCc
Confidence 7764 899999999999976 999999988777554443
No 410
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=8.3e-15 Score=113.59 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=88.5
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc---------eEEECCEE-------CCCCChhhhccCcEEE
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG---------NITISGVD-------LKHLDGTWLRGNVIGL 75 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G---------~i~i~g~~-------i~~~~~~~~r~~~i~~ 75 (181)
++++.+++.+| +.+|+|||||||||||.+|...+-.... .....|.. +..-..........-+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 46677777666 8899999999999999998755421110 01111110 0000000011121225
Q ss_pred EccCCC-Cc-cccHHHHhhc-CC--C--C-------CCHHHHHHHHHH------hccccccccCCCCCCCHHHHHHHHHH
Q psy10472 76 INQEPV-LF-ATSVRENIRY-GD--S--S-------VSDEQIEEAAKL------ANAHGFISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 76 v~q~~~-l~-~~tv~enl~~-~~--~--~-------~~~~~~~~~~~~------~~~~~~~~~~P~~~LD~~~~~~i~~~ 135 (181)
++|+.. .+ ..+..|.+.- .. . . ....+...+... ....-++.|+|+++||+..+..+++.
T Consensus 93 ~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~ 172 (213)
T cd03277 93 LPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM 172 (213)
T ss_pred EchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH
Confidence 556431 12 2244433321 10 0 0 011222111111 23345778999999999999999999
Q ss_pred HHHhc-C-C-cEEEEEecCchhhh-cCC--eEEEEeCCeE
Q psy10472 136 LESAC-K-G-RTVLMIAHRLSTVQ-NAD--LIVVLQAGQI 169 (181)
Q Consensus 136 l~~~~-~-~-~tii~vtHd~~~~~-~~d--~v~~l~~G~i 169 (181)
+.... + | .|+|++||++.... .|| +|++|++|+-
T Consensus 173 l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~~ 212 (213)
T cd03277 173 LVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGPH 212 (213)
T ss_pred HHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCcc
Confidence 98764 4 4 58999999986653 355 8899999863
No 411
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=1.2e-14 Score=112.03 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=78.7
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCcc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFA-T 85 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~-~ 85 (181)
.+.+.+|++|++++|++++|+||||+|||||+++++++.- +. + +| ++ |..+. .
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~--------------------la-~-~G~~v---pa~~~~l 69 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI--------------------MA-Q-IGCFV---PAEYATL 69 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH--------------------HH-H-cCCCc---chhhcCc
Confidence 3568999999999999999999999999999999987730 00 0 11 11 11111 1
Q ss_pred cHHHHhhcCCCC----------CC--HHHHHHHHHHhc-cccccccCCCCCCCHHHHHHH-HHHHHHhc-CCcEEEEEec
Q psy10472 86 SVRENIRYGDSS----------VS--DEQIEEAAKLAN-AHGFISEFPSGALDNESEKLV-QAALESAC-KGRTVLMIAH 150 (181)
Q Consensus 86 tv~enl~~~~~~----------~~--~~~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~-~~~tii~vtH 150 (181)
++.++|...... .. ..++..++..+. -.-++.|+|+.++|+.....+ ..+++.+. .+.++|++||
T Consensus 70 ~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH 149 (204)
T cd03282 70 PIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATH 149 (204)
T ss_pred cChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 344444321100 00 112223333322 233567999999999765443 44555543 4899999999
Q ss_pred Cchhhhc
Q psy10472 151 RLSTVQN 157 (181)
Q Consensus 151 d~~~~~~ 157 (181)
+.+.+..
T Consensus 150 ~~~l~~~ 156 (204)
T cd03282 150 FRDIAAI 156 (204)
T ss_pred hHHHHHH
Confidence 9998865
No 412
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.56 E-value=1.9e-15 Score=127.72 Aligned_cols=68 Identities=26% Similarity=0.321 Sum_probs=57.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGVDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
..+|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|.++...+...+..- -+|||+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~L--R~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETL--DEIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHH--HHHHHhh
Confidence 46899999999999999999999999999999 788888888 79999999987665443322 2788865
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.48 E-value=3.2e-14 Score=118.80 Aligned_cols=147 Identities=22% Similarity=0.286 Sum_probs=94.2
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhhccC--cEEEEcc----CCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWLRGN--VIGLINQ----EPV 81 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~r~~--~i~~v~q----~~~ 81 (181)
..+|++++|+||||-||||-+|+|+|.+.|.=|+.. |.|..+...- ..+... ++..=+| -|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF-~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYF-KKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHH-HHHHcCCcceecchHHHHHHHH
Confidence 458999999999999999999999999999877531 1111111000 000000 1222233 234
Q ss_pred CccccHHHHhhcCCCCCCHH-------------------------HHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHH
Q psy10472 82 LFATSVRENIRYGDSSVSDE-------------------------QIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 82 l~~~tv~enl~~~~~~~~~~-------------------------~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~ 135 (181)
.+.++|.|-+.-.......+ ++.-++..+ +.+-++.++|++.||...+..+...
T Consensus 176 ~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~ 255 (591)
T COG1245 176 VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255 (591)
T ss_pred HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH
Confidence 45567777765321111111 111111111 1222467889999999999999999
Q ss_pred HHHhcC-CcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 136 LESACK-GRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 136 l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
++.+.+ +++||+|.||+..+.+ +|-|.++..
T Consensus 256 Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 256 IRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 999876 8999999999999987 999888853
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=2.6e-13 Score=105.26 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=81.0
Q ss_pred eEEecCC--cEEEEECCCCCcHHHHHHHHh--cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc--ccHHH
Q psy10472 16 NLRIPAG--QKVAIVGSSGNGKSTIVALLE--RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA--TSVRE 89 (181)
Q Consensus 16 sl~i~~G--e~~~liG~nGsGKSTLl~~l~--gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~--~tv~e 89 (181)
++.+.++ .+++|+||||+|||||||.++ +++ +..|....... ..++|..|...-+. .++.+
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~------------~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS------------ATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC------------cEEeeeeeeeeeeCCccChhh
Confidence 4555555 789999999999999999998 433 56676544320 12777777654442 36666
Q ss_pred HhhcCCCCCCHHHHHHHHHHhcc-ccccccCCCCCCCHHH-HHHHHHHHHHhc-C---CcEEEEEecCchhhhc
Q psy10472 90 NIRYGDSSVSDEQIEEAAKLANA-HGFISEFPSGALDNES-EKLVQAALESAC-K---GRTVLMIAHRLSTVQN 157 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~~LD~~~-~~~i~~~l~~~~-~---~~tii~vtHd~~~~~~ 157 (181)
++.... ..-+++..++..+.- .-++-|+|++++|+.. ...+..+++.+. + +.++|++||+.+.+..
T Consensus 88 ~~S~f~--~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 88 GQSAFM--IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred ccchHH--HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 653221 112333444443332 2356899999999975 444455666643 2 3589999999998754
No 415
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=2.8e-13 Score=105.61 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=85.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc-CCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER-FYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
+.+.++++|++++|++++|+||||+||||+++++++ .+.+..|...+.. .. .++|..| +|. ..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-----------~~~~~~~---i~~~~~ 82 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-----------TLSIFDS---VLTRMG 82 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-----------EEeccce---EEEEec
Confidence 468899999999999999999999999999999999 6778888765432 11 1333222 121 12
Q ss_pred HHHHhhcCCCCC--CHHHHHHHHHHhccc-cccccCCCCCCCHHHHHH-HHHHHHHhc--CCcEEEEEecCchhhh
Q psy10472 87 VRENIRYGDSSV--SDEQIEEAAKLANAH-GFISEFPSGALDNESEKL-VQAALESAC--KGRTVLMIAHRLSTVQ 156 (181)
Q Consensus 87 v~enl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~P~~~LD~~~~~~-i~~~l~~~~--~~~tii~vtHd~~~~~ 156 (181)
..|++.-+.+.. .-.++..+++.+.-. -++.|+|..+.|+..... ...+++.+. .+.++|++||+.+...
T Consensus 83 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 83 ASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 233332221111 123444555554333 356789988888665444 344555443 3789999999998754
No 416
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.45 E-value=1.4e-12 Score=124.53 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=54.6
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe------CCeEEeecCCchh
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMLGQHEN 178 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~------~G~i~~~~~~~~~ 178 (181)
++.|+||.+|++...+.+++++.++. .|.|||+|.||++.++.||+|+-|. .|+|+. .|++++
T Consensus 1724 yilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva-~Gtp~~ 1793 (1809)
T PRK00635 1724 FLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILF-SGPPKD 1793 (1809)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEE-EeCHHH
Confidence 56788999999999999999998874 6999999999999999999999994 568887 465544
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.37 E-value=5.7e-13 Score=120.03 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=83.1
Q ss_pred eeEEecCC-cEEEEECCCCCcHHHHHHHHhcC-CCCCcce-EEECCEECCCCChhhhccCcEEEEccCCCCcc--ccHHH
Q psy10472 15 FNLRIPAG-QKVAIVGSSGNGKSTIVALLERF-YDVSSGN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLFA--TSVRE 89 (181)
Q Consensus 15 isl~i~~G-e~~~liG~nGsGKSTLl~~l~gl-~~p~~G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~--~tv~e 89 (181)
+|+++.++ ++++|+||||+|||||||+++|. +.+..|. |.... . ..++|..|....+. .++.+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~-----------~-~~~~~~d~i~~~i~~~~si~~ 381 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE-----------H-SEIPYFEEIFADIGDEQSIEQ 381 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc-----------c-ccccchhheeeecChHhHHhh
Confidence 78889887 89999999999999999999998 5566662 21110 0 11444444432222 25555
Q ss_pred HhhcCCCCCCHHHHHHHHHHhc-cccccccCCCCCCCHHHHHHH-HHHHHHhc-CCcEEEEEecCchhhh
Q psy10472 90 NIRYGDSSVSDEQIEEAAKLAN-AHGFISEFPSGALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTVQ 156 (181)
Q Consensus 90 nl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~-~~~tii~vtHd~~~~~ 156 (181)
++.... ....++..++..+. -.-++.|+|++++|+.....+ ..++..+. .|+++|++||+.+...
T Consensus 382 ~LStfS--~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 382 NLSTFS--GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred hhhHHH--HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 553321 11222333444332 234568999999999988877 45666654 5899999999988654
No 418
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.37 E-value=9.9e-12 Score=109.95 Aligned_cols=64 Identities=33% Similarity=0.497 Sum_probs=54.9
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCchhh
Q psy10472 115 FISEFPSGALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHENT 179 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~~~ 179 (181)
++.|+||.+|-..-.+.+++.|.++ .+|.|||+|.|+++.++.||+|+-| ..|+|+. .++++++
T Consensus 847 YiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva-~GTPeev 917 (935)
T COG0178 847 YILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVA-SGTPEEV 917 (935)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEE-ecCHHHH
Confidence 4678899999999999999999886 4699999999999999999999999 3578888 5666543
No 419
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=92.46 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=88.8
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEECCE-ECCCCCh-----hhhccC-cEEEEccCCCCccc-
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGV-DLKHLDG-----TWLRGN-VIGLINQEPVLFAT- 85 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i~g~-~i~~~~~-----~~~r~~-~i~~v~q~~~l~~~- 85 (181)
.|++++- ++.|+|.||+||||||-.|+-... +..|.=-+.+. +.+.-.. ..++.+ ..||.+---.+++.
T Consensus 32 ~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~a 110 (233)
T COG3910 32 RLEFRAP-ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVA 110 (233)
T ss_pred hccccCc-eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHH
Confidence 3566654 999999999999999999974432 22222222221 1110000 011211 13333322222221
Q ss_pred cHHHHhh----cCCCCC----CHHH-HHHHHHHhcc-ccccccCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchh
Q psy10472 86 SVRENIR----YGDSSV----SDEQ-IEEAAKLANA-HGFISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLST 154 (181)
Q Consensus 86 tv~enl~----~~~~~~----~~~~-~~~~~~~~~~-~~~~~~~P~~~LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~ 154 (181)
+-.|.+. ++.+.. ..+. +.-..+.+.- --++.|+|.++|.|.-+..++..|+++.+ |.-+||+||.+-.
T Consensus 111 s~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL 190 (233)
T COG3910 111 SYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL 190 (233)
T ss_pred HHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 2222221 111100 0111 1222233322 23578999999999999999999998764 8999999999988
Q ss_pred hhc-CCeEEEEeCCeEEe
Q psy10472 155 VQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 155 ~~~-~d~v~~l~~G~i~~ 171 (181)
+.. --+|+.++.+.+.+
T Consensus 191 lAiP~A~I~~~~~~g~~~ 208 (233)
T COG3910 191 LAIPGAEIYEISESGIEE 208 (233)
T ss_pred eeCCCcEEEEEecCCccc
Confidence 876 67899998876644
No 420
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=3.9e-11 Score=96.14 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=41.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-C---CeEEEEeCCeE
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-A---DLIVVLQAGQI 169 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~---d~v~~l~~G~i 169 (181)
-++.|+|+++||+..++.+.+.+.... .+++++|+...+.. | ++++.+++|++
T Consensus 213 illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 213 VLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 356678999999999999999997653 46666666665544 6 78999999986
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.26 E-value=2e-11 Score=94.63 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=41.4
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 115 FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
++.|+|.++||...+..+.++|+...++.-+|++||+...+..||+.+.+.
T Consensus 162 ~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 162 LILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp EEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 366789999999999999999998877889999999999999999887763
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.26 E-value=7.5e-12 Score=94.95 Aligned_cols=123 Identities=17% Similarity=0.116 Sum_probs=68.3
Q ss_pred EEEEECCCCCcHHHHHHHHh-cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCCC--CH
Q psy10472 24 KVAIVGSSGNGKSTIVALLE-RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSV--SD 100 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~--~~ 100 (181)
+++|.||||+|||||||.++ ..+.+..|...... . ..++++-+-...+. ..+++.-+.... ..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~---------~---~~~~~~d~il~~~~--~~d~~~~~~s~fs~~~ 66 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE---------S---AELPVFDRIFTRIG--ASDSLAQGLSTFMVEM 66 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh---------h---eEecccceEEEEeC--CCCchhccccHHHHHH
Confidence 36899999999999999998 44444444322211 0 01222222111111 112221111111 12
Q ss_pred HHHHHHHHHh-ccccccccCCCCCCCHHHHHHH-HHHHHHhc-C-CcEEEEEecCchhhhcCCe
Q psy10472 101 EQIEEAAKLA-NAHGFISEFPSGALDNESEKLV-QAALESAC-K-GRTVLMIAHRLSTVQNADL 160 (181)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~-~-~~tii~vtHd~~~~~~~d~ 160 (181)
.++..++..+ +..-++.|+|++++|+.....+ ..+++.+. + +.++|++||+.+....|++
T Consensus 67 ~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 67 KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 2333444432 2234678999999999976665 45555543 3 7899999999976665664
No 423
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=1.9e-11 Score=95.11 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=84.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
+.+-+|++|++++|++++|.||||+||||+++++++..-.. .|. .+ +... ..++++ ..+|. ..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~~---~~i~~~---~~i~~~~~ 81 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAKS---MRLSLV---DRIFTRIG 81 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Cccc---cEeccc---cEEEEecC
Confidence 46889999999999999999999999999999998764221 121 00 0000 012221 12232 23
Q ss_pred HHHHhhcCCCCC--CHHHHHHHHHHhccc-cccccCCCCCCCHHHHHHHHHH-HHHhc-C-CcEEEEEecCchhhhc
Q psy10472 87 VRENIRYGDSSV--SDEQIEEAAKLANAH-GFISEFPSGALDNESEKLVQAA-LESAC-K-GRTVLMIAHRLSTVQN 157 (181)
Q Consensus 87 v~enl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~P~~~LD~~~~~~i~~~-l~~~~-~-~~tii~vtHd~~~~~~ 157 (181)
..|++..+.+.. .-.++..+++...-. -++-|+|..|+|+.....+... ++.+. . +.++|++||+++.+..
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 445554442222 123344555554333 3567889999999887666666 55543 3 8999999999998754
No 424
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.24 E-value=2.1e-11 Score=99.52 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=86.6
Q ss_pred eeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcC
Q psy10472 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG 94 (181)
Q Consensus 15 isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~ 94 (181)
+++.++.|+.++|+||+|||||||+++|+++++|..|.+.+.. ...+.... ...+.++.+...- +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~--~~~~~l~~~~~~~-----------~ 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH--PNYVHLFYSKGGQ-----------G 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC--CCEEEEEecCCCC-----------C
Confidence 5678899999999999999999999999999999999888854 22222211 1224444432110 0
Q ss_pred CCCCCHHH-HHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 95 DSSVSDEQ-IEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKG-RTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 95 ~~~~~~~~-~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~-~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
....+..+ +..++ ....+-++-++|.+ .+.+++++....| .+++.++|..+.....+|+..|..|++..
T Consensus 202 ~~~~~~~~~l~~~L-r~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~ 272 (308)
T TIGR02788 202 LAKVTPKDLLQSCL-RMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAG 272 (308)
T ss_pred cCccCHHHHHHHHh-cCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccc
Confidence 01112222 22233 24455566677775 3455666655454 46799999998666688988888777655
No 425
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.22 E-value=9.5e-11 Score=99.59 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=103.4
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---h----hhccCcEEEEccC--C
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T----WLRGNVIGLINQE--P 80 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~----~~r~~~i~~v~q~--~ 80 (181)
.+++++ |.+.+|++++|+|+||+|||||+++|+++.+|+.|.+...|+.-..... . ...++.+-++.+. +
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~ 230 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQS 230 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCC
Confidence 578888 9999999999999999999999999999999999887776654322211 0 1112223333332 2
Q ss_pred CC------ccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHhc-CCc---
Q psy10472 81 VL------FAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESAC-KGR--- 143 (181)
Q Consensus 81 ~l------~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~~-~~~--- 143 (181)
.. +.. |+.|.+.--... .+-.+..+|.+.+.+ ...+.|. .++|+.....+.+++.+.. .+.
T Consensus 231 p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl--~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSI 308 (440)
T TIGR01026 231 PLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGL--AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSI 308 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHH--hcCCCCcccccChhHHHHHHHHHHHhccCCCCee
Confidence 11 112 455665421111 123344455554432 2334454 5899999999999998764 355
Q ss_pred ----EEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 144 ----TVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 144 ----tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
||++.+||+.. ..||++..+.+|+++.
T Consensus 309 T~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivL 339 (440)
T TIGR01026 309 TAFYTVLVEGDDMNE-PIADSVRGILDGHIVL 339 (440)
T ss_pred eEEEEEEccCcCCCc-chhhhhccccceEEEE
Confidence 78888998732 2389999999999986
No 426
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.20 E-value=2.1e-11 Score=92.59 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=57.5
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-ccHH
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA-TSVR 88 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~-~tv~ 88 (181)
..-+.+.+++|+.++|+||||||||||+++|+++++|+.|.|.+.+..-...+ ....+++++|... .++ .+..
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP----HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC----CCCEEEEEEecCCCCCCCccCHH
Confidence 34455678999999999999999999999999999999999999775332221 1123667666543 333 3777
Q ss_pred HHhhcC
Q psy10472 89 ENIRYG 94 (181)
Q Consensus 89 enl~~~ 94 (181)
+.+...
T Consensus 91 ~~l~~~ 96 (186)
T cd01130 91 DLLRSA 96 (186)
T ss_pred HHHHHH
Confidence 777543
No 427
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.17 E-value=5.4e-11 Score=91.23 Aligned_cols=47 Identities=30% Similarity=0.395 Sum_probs=37.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCC------------CCcceEEECCEECCCCChhhh
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYD------------VSSGNITISGVDLKHLDGTWL 68 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~------------p~~G~i~i~g~~i~~~~~~~~ 68 (181)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++...+...+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~ 61 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEF 61 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHH
Confidence 5899999999999999999999999985 66777 57776655554444
No 428
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.16 E-value=2.9e-11 Score=102.18 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=97.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE---EECCEECCCCChh-----hhccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI---TISGVDLKHLDGT-----WLRGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i---~i~g~~i~~~~~~-----~~r~~~i~~v~q~~ 80 (181)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+.+ -.++.++..+... ...+..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3589999 9999999999999999999999999999999886433 3334333322111 12233589999998
Q ss_pred CCccc-cHHHHhhcCC-----CC-------CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh---c-CC
Q psy10472 81 VLFAT-SVRENIRYGD-----SS-------VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA---C-KG 142 (181)
Q Consensus 81 ~l~~~-tv~enl~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~---~-~~ 142 (181)
.++.. ++.++..+.. .. .+-.+...+.+.+.+ ...+.|.. +--+..-..+-.++++. . .|
T Consensus 222 s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl--~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~G 299 (434)
T PRK07196 222 SPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL--SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNG 299 (434)
T ss_pred ChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH--hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCE
Confidence 87754 8887765321 00 112233334443332 23344543 55565555666666553 2 23
Q ss_pred -cEEEEEecC-chhh-hc-CCeEEEEeCCeEEe
Q psy10472 143 -RTVLMIAHR-LSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 143 -~tii~vtHd-~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
.|.+.+-.- -+.+ .. +|.+.-+-||+|+-
T Consensus 300 SIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivL 332 (434)
T PRK07196 300 TMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVL 332 (434)
T ss_pred EeeeeeEEEccCCCCCCchhHhhhhhcceEEEE
Confidence 354444331 1122 22 67777777888864
No 429
>KOG0063|consensus
Probab=99.14 E-value=1.4e-10 Score=96.60 Aligned_cols=143 Identities=20% Similarity=0.310 Sum_probs=93.0
Q ss_pred ccccceeeEEecCCc-----EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-
Q psy10472 9 KTILKDFNLRIPAGQ-----KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL- 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge-----~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l- 82 (181)
+..+.+..|.|+.|+ ++..+|.||.|||||+++++|.++|++|. ++..+ .++|=||....
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l--------nVSykpqkispK 414 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL--------NVSYKPQKISPK 414 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc--------ceeccccccCcc
Confidence 446778888888875 68899999999999999999999999871 11111 13333443221
Q ss_pred ccccHHHHhhcC------------------------------CCCCCHHHHHHHHHHhcc--ccccccCCCCCCCHHHHH
Q psy10472 83 FATSVRENIRYG------------------------------DSSVSDEQIEEAAKLANA--HGFISEFPSGALDNESEK 130 (181)
Q Consensus 83 ~~~tv~enl~~~------------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~P~~~LD~~~~~ 130 (181)
+.+||++-+.-- ......+++..++ .+|. .-++-++|.+.||.+++.
T Consensus 415 ~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~K-OGGKpAdvYliDEpsAylDSeQRi 493 (592)
T KOG0063|consen 415 REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALAL-CLGKPADVYLIDEPSAYLDSEQRI 493 (592)
T ss_pred ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHH-hcCCCCceEEecCchhhcChHHHH
Confidence 223444332100 0001112222222 1222 235678899999999988
Q ss_pred HHHHHHHHh--cCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 131 LVQAALESA--CKGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 131 ~i~~~l~~~--~~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
..-..+++. +..+|-.+|.||.-.+.+ +|||++.+.
T Consensus 494 ~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 494 IASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 777777663 457899999999999977 999999864
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.13 E-value=6.6e-10 Score=87.13 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=79.5
Q ss_pred EecCCcEEEEECCCCCcHHHH-HHHHhcCCCCCcceEEECCEECCCCChhhhcc--CcEEEEccCCCCccccHHHHhhc-
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTI-VALLERFYDVSSGNITISGVDLKHLDGTWLRG--NVIGLINQEPVLFATSVRENIRY- 93 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTL-l~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~--~~i~~v~q~~~l~~~tv~enl~~- 93 (181)
-+++|+++.|.|+|||||||| +++++++.++....+++.... ++.++.+ ..+|+-.+... ...++.+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~~~~~g~~~~~~~-----~~~~l~~~ 90 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQMMSLGYDINKKL-----ISGKLLYI 90 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHHHHHhCCchHHHh-----hcCcEEEE
Confidence 478999999999999999999 799999887776777776432 1111111 11333221110 0001110
Q ss_pred --CCCCCC----HHHHHHHHHHh---ccccccccCCCCCC----CHHHHHHHHHHHHHhc-CCcEEEEEecCchh-----
Q psy10472 94 --GDSSVS----DEQIEEAAKLA---NAHGFISEFPSGAL----DNESEKLVQAALESAC-KGRTVLMIAHRLST----- 154 (181)
Q Consensus 94 --~~~~~~----~~~~~~~~~~~---~~~~~~~~~P~~~L----D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~----- 154 (181)
...... ...+..+++.. +..-++-|+|++.+ |+...+.+.+.++.++ .|.|+++ ||+...
T Consensus 91 ~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~ 169 (230)
T PRK08533 91 PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESV 169 (230)
T ss_pred EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eeccccccccc
Confidence 000001 12223333332 33446778899888 7777788888888764 4776555 565443
Q ss_pred ---hhc-CCeEEEEe
Q psy10472 155 ---VQN-ADLIVVLQ 165 (181)
Q Consensus 155 ---~~~-~d~v~~l~ 165 (181)
+.. ||-|+.|+
T Consensus 170 ~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 170 LTILRTAATMLIRLE 184 (230)
T ss_pred ceeEEEeeeEEEEEE
Confidence 233 68888886
No 431
>KOG0066|consensus
Probab=99.13 E-value=2.8e-11 Score=101.33 Aligned_cols=164 Identities=16% Similarity=0.243 Sum_probs=99.7
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhh----hc--cCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTW----LR--GNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~----~r--~~~i~~v~q~~ 80 (181)
+.++.+.||.|-.|..++|+||||-||||||+.|+.- --|..=.|.+..+.+..-+... ++ .++..++-...
T Consensus 277 k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~ 356 (807)
T KOG0066|consen 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEA 356 (807)
T ss_pred ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHH
Confidence 4578899999999999999999999999999999743 3344445666665543211100 00 00011111111
Q ss_pred ----CCccc--cHHHHh-------h-cCCCCCCHHHHHHHHHHh------------------------------cccccc
Q psy10472 81 ----VLFAT--SVRENI-------R-YGDSSVSDEQIEEAAKLA------------------------------NAHGFI 116 (181)
Q Consensus 81 ----~l~~~--tv~enl-------~-~~~~~~~~~~~~~~~~~~------------------------------~~~~~~ 116 (181)
.+-.+ |+.|-+ . .+.. ....+.++++.-+ ...-+.
T Consensus 357 ~L~~q~e~Gd~taaErl~~v~~ELraiGA~-sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLM 435 (807)
T KOG0066|consen 357 KLMSQIEEGDTTAAERLKEVADELRAIGAD-SAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLM 435 (807)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHhccc-cchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeee
Confidence 01111 333322 1 1111 1112222222211 112245
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 117 SEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 117 ~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
.++||+.||......+-..|.-+ .+|+++||||..++.. |..|+.|++-++..+.+.
T Consensus 436 LDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 436 LDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred ecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence 67899999998887777777666 3799999999999976 999999999888665543
No 432
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.10 E-value=1e-10 Score=99.11 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=94.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC---CEECCCCChh---hhccCcEEEEccCCCC-
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS---GVDLKHLDGT---WLRGNVIGLINQEPVL- 82 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~---g~~i~~~~~~---~~r~~~i~~v~q~~~l- 82 (181)
.+++.++ .|.+|++++|+||||||||||+++|+++.+|+.|.|.+. |.++..+... ..|++.|++++|....
T Consensus 154 ~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~ 232 (450)
T PRK06002 154 RVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESP 232 (450)
T ss_pred EEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCH
Confidence 4677775 899999999999999999999999999999999998885 4555443221 2344569999997531
Q ss_pred -------ccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh----c-CC-
Q psy10472 83 -------FAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA----C-KG- 142 (181)
Q Consensus 83 -------~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~----~-~~- 142 (181)
+.. |+.|++.--... .+-.+...+.+...+ ...+.|.. +--+..-..+-.++++. . .|
T Consensus 233 ~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl--~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GS 310 (450)
T PRK06002 233 MMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVAL--AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGS 310 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHH--hcCCCCccccCCccHHHHhhHHHHHhccCCCCCee
Confidence 222 667776532111 123344445444333 22344433 34343333444444432 1 23
Q ss_pred cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472 143 RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 143 ~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
.|.+.+.. +-+.+ .. +|.+.-+-||+|+-
T Consensus 311 IT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivL 342 (450)
T PRK06002 311 ITGIFSVLVDGDDHNDPVADSIRGTLDGHIVL 342 (450)
T ss_pred eeEEEEEEecCCCCCCccHHHHHhhcceEEEE
Confidence 45555432 22222 22 56666667777764
No 433
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.10 E-value=7.8e-11 Score=88.77 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=48.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY 93 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~ 93 (181)
+|++++|+|+||||||||+++|++++.+ +.++|.++... ...++...++.+|+...++. ++..|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 5899999999999999999999999887 58899877432 22232235677777554443 66666644
No 434
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.00 E-value=6.1e-10 Score=84.46 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=42.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
|++++|+||||||||||+++|++...| .+.+.+..+........+. .+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSEN-HIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHh-heeEcHHHH
Confidence 789999999999999999999999876 5888887776543333332 478888874
No 435
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.00 E-value=2.5e-09 Score=84.77 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=83.3
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE--ECCEECCCCChhhhccCc--E--EEEccCCCCc------c
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT--ISGVDLKHLDGTWLRGNV--I--GLINQEPVLF------A 84 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~--i~g~~i~~~~~~~~r~~~--i--~~v~q~~~l~------~ 84 (181)
+.+..|+.++|+||+|+|||||++.++.......+++. +....-...+..++.+.. + .--++.+... .
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 47889999999999999999999999998877543332 221110112233322221 1 1112222111 0
Q ss_pred c-cHHHHhhc-CCC-------------------------C-CCH-----HHHHHHHHHhcc---ccccccCCCCCCCHHH
Q psy10472 85 T-SVRENIRY-GDS-------------------------S-VSD-----EQIEEAAKLANA---HGFISEFPSGALDNES 128 (181)
Q Consensus 85 ~-tv~enl~~-~~~-------------------------~-~~~-----~~~~~~~~~~~~---~~~~~~~P~~~LD~~~ 128 (181)
. +..++... +.. . ... ....+.++..+. .+-+.-.||..+|..+
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~d~~~ 170 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALVDTGS 170 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeheecCCC
Confidence 1 22222211 100 0 000 001122222221 1222223788999654
Q ss_pred HHH-HHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 129 EKL-VQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 129 ~~~-i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
... +. +.... .+.|.|++||++.....+|.|.+|+.|.+.+
T Consensus 171 ~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 171 RMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE 213 (249)
T ss_pred cccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence 432 33 34443 4789999999999999999999999998754
No 436
>PRK00064 recF recombination protein F; Reviewed
Probab=98.97 E-value=1.1e-08 Score=85.22 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc---CCeEEEEeCCeE
Q psy10472 120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI 169 (181)
Q Consensus 120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~---~d~v~~l~~G~i 169 (181)
|++.||+..++.+.+.+... +..++++||+.+.+.. .++++.+++|++
T Consensus 309 ~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 309 VASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENAKIFHVEQGKI 359 (361)
T ss_pred chhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccCcEEEEeCCEE
Confidence 88899999999999988653 4589999999876643 458999999987
No 437
>PRK08149 ATP synthase SpaL; Validated
Probab=98.96 E-value=8.8e-10 Score=93.14 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=98.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCCChhh---hccCcEEEEccCCCC-
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDGTW---LRGNVIGLINQEPVL- 82 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l- 82 (181)
.+++++ +++.+||+++|+|+||+|||||+++|+++..++. |.|-.+|.++..+.... .+.+++++|+....-
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p 218 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFS 218 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCC
Confidence 589999 9999999999999999999999999999999987 88999998876543322 122347888875421
Q ss_pred --------cc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHh---cCC-c
Q psy10472 83 --------FA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESA---CKG-R 143 (181)
Q Consensus 83 --------~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~---~~~-~ 143 (181)
+. .|+.|++.--.+. .+-.+...+.+...+ ...+.|. .+-.+..-..+-.++++. ..| .
T Consensus 219 ~~~r~~a~~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l--~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSI 296 (428)
T PRK08149 219 SVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL--AAGELPARRGYPASVFDSLPRLLERPGATLAGSI 296 (428)
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHh--hcCCCCcccccCccHHHHHHHHHHhccCCCCCCc
Confidence 12 2566666432111 122333444444332 2334455 355555444455555543 234 4
Q ss_pred EEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472 144 TVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 144 tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
|.+.+-. +-+.+ .. +|.+.-+-||+|+-
T Consensus 297 T~~~tVl~~~dD~~dpi~d~~~~ilDg~ivL 327 (428)
T PRK08149 297 TAFYTVLLESEEEPDPIGDEIRSILDGHIYL 327 (428)
T ss_pred eEEEEEEecCCCCCCCchhhhheeccEEEEE
Confidence 5554433 11222 22 67777778888864
No 438
>PRK13695 putative NTPase; Provisional
Probab=98.92 E-value=2.3e-09 Score=80.34 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=37.8
Q ss_pred ccccCC--CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 115 FISEFP--SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 115 ~~~~~P--~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
++-|+| +..+|+...+.+.+++ ..+.++|+|+|+......+|++..+.+|++.+.
T Consensus 100 lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 100 IIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred EEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEEEEE
Confidence 556664 3444544444444333 347899999999655556999999999999874
No 439
>PRK01889 GTPase RsgA; Reviewed
Probab=98.92 E-value=1.9e-09 Score=89.68 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=59.9
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR 92 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~ 92 (181)
+.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. .. +...+.+++|+..++......++.
T Consensus 186 ~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt-~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 186 DVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TT-THRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hh-hhccEEEecCCCeecCCCchhhhc
Confidence 33444567899999999999999999999999999999999998743221 11 223488999988888766666666
Q ss_pred cC
Q psy10472 93 YG 94 (181)
Q Consensus 93 ~~ 94 (181)
+.
T Consensus 262 l~ 263 (356)
T PRK01889 262 LW 263 (356)
T ss_pred cc
Confidence 54
No 440
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.91 E-value=7.8e-10 Score=85.21 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=43.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHh
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENI 91 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl 91 (181)
++|++++|+||||||||||++.|++++++ ..+.+..++.-. .......+. ..++.+|.+..|+. .+.+.|
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l 75 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK-DQSHLEMAE-RKKTNFDHPDAFDNDLLYEHL 75 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc-ChhhCCHHH-hcCCCCCCccHhHHHHHHHHH
Confidence 57999999999999999999999999876 223333333111 111111122 25677887766654 444444
No 441
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.90 E-value=1.4e-08 Score=74.06 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=30.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~ 59 (181)
+++|.||||+|||||++.+++...+..|.+.+.+.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 378999999999999999999988877877765543
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.89 E-value=4.9e-09 Score=78.75 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=46.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE-----------CCEECCCCChhhh----ccCcEEEEccCCCCccc-
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI-----------SGVDLKHLDGTWL----RGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i-----------~g~~i~~~~~~~~----r~~~i~~v~q~~~l~~~- 85 (181)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+...+ +.+.++.++|.+..+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999987654 55544 4555444443332 23348889998777655
Q ss_pred cHH
Q psy10472 86 SVR 88 (181)
Q Consensus 86 tv~ 88 (181)
++.
T Consensus 80 ~~~ 82 (179)
T TIGR02322 80 PAE 82 (179)
T ss_pred hHH
Confidence 443
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.88 E-value=5.3e-09 Score=94.79 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=73.9
Q ss_pred eeeEEecC-CcEEEEECCCCCcHHHHHHHHhcC-CCCCcce-EEECCEECCCCChhhhccCcEEEEccCCCCc--cccHH
Q psy10472 14 DFNLRIPA-GQKVAIVGSSGNGKSTIVALLERF-YDVSSGN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLF--ATSVR 88 (181)
Q Consensus 14 ~isl~i~~-Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~--~~tv~ 88 (181)
..++.+.. +.++.|.|||++||||+||.++.. +-+..|. |-... . ..++++.+-..-+ ..++.
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~-----------~-~~i~~~~~i~~~ig~~~si~ 385 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANE-----------P-SEIPVFKEIFADIGDEQSIE 385 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCC-----------C-ccccccceEEEecCCccchh
Confidence 34555654 467999999999999999999643 1122221 00000 0 0022211111001 11233
Q ss_pred HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhc-CCeEEE
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQN-ADLIVV 163 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~-~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~ 163 (181)
.++.... ....+...++..+ .-.-++.|+|++++|+.....+.. ++..+. .+.++|++||+.+.... +++..+
T Consensus 386 ~~lStfS--~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 386 QSLSTFS--GHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hchhHHH--HHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 2222110 1122233334333 223456899999999998777754 555543 58999999999988765 554443
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.87 E-value=1.7e-09 Score=67.38 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=32.4
Q ss_pred cceeeEEecC-CcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472 12 LKDFNLRIPA-GQKVAIVGSSGNGKSTIVALLERFYDVSS 50 (181)
Q Consensus 12 l~~isl~i~~-Ge~~~liG~nGsGKSTLl~~l~gl~~p~~ 50 (181)
+++.++++.+ |+++.|.|||||||||||.++.-++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4567788886 56999999999999999999987776654
No 445
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.87 E-value=2.9e-09 Score=90.38 Aligned_cols=158 Identities=22% Similarity=0.308 Sum_probs=89.7
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEEC---CEECCCCChhhhc--cCcEEEE-----cc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITIS---GVDLKHLDGTWLR--GNVIGLI-----NQ 78 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~---g~~i~~~~~~~~r--~~~i~~v-----~q 78 (181)
.+++++ |++.+|++++|+|+||||||||+++|+++.++ +.|.|.+. |+++..+....++ ....+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 477777 99999999999999999999999999999854 44666664 4555433322222 1224566 88
Q ss_pred CCCC-----c-cccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHh---cCC-
Q psy10472 79 EPVL-----F-ATSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESA---CKG- 142 (181)
Q Consensus 79 ~~~l-----~-~~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~---~~~- 142 (181)
+|.. + ..++.|.+...... .+..+..++++.+++. ..+.|. .+--|..-..+-.++++. .+|
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~--~gepp~~~gypP~~fS~l~~llERag~~~~GS 309 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA--AGEPPARAGYTPSVFSTLPKLLERSGASDKGT 309 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC--CCCCccccCCCCchhhHhHHHHHHhcCCCCcc
Confidence 8731 1 12677777543221 1234555666666552 111121 112222233344444432 234
Q ss_pred cE----EEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 143 RT----VLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 143 ~t----ii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
.| |.+..+|+... .+|.+.-+-+|+++-
T Consensus 310 ITai~tVl~~gdD~~dp-i~d~~~~i~dg~ivL 341 (442)
T PRK06315 310 ITAFYTVLVAGDDMNEP-VADEVKSILDGHIVL 341 (442)
T ss_pred eeeeEEEEecCCCCCcc-cHHHhhhhcceEEEE
Confidence 33 33333444321 267777777888875
No 446
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.82 E-value=4.1e-09 Score=86.39 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=54.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----h-hhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----G-TWLRGNVIGLINQEPVLFAT-SVRENIRY 93 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~-~~~r~~~i~~v~q~~~l~~~-tv~enl~~ 93 (181)
++|++++++|||||||||++..|++.+.+..++|.+.+.+..... . .+..+..+.+++|.....+. ++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 568999999999999999999999999998899998887754321 1 11122348899986655543 66677643
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.81 E-value=2e-08 Score=76.95 Aligned_cols=117 Identities=24% Similarity=0.319 Sum_probs=65.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCCCC-HH
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVS-DE 101 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~~-~~ 101 (181)
++.|+||+||||||+++.|++.+.+. .|.|.....++. .. .....+++.|... +..... .+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~----~~~~~~~i~q~~v------------g~~~~~~~~ 65 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FV----HESKRSLINQREV------------GLDTLSFEN 65 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cc----ccCccceeeeccc------------CCCccCHHH
Confidence 78999999999999999998888644 677766554431 11 1111344444211 000000 12
Q ss_pred HHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE
Q psy10472 102 QIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 164 (181)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l 164 (181)
.+..++.. +..-++-++|. |++. +...++....|..++.++|..+.....+|++.+
T Consensus 66 ~i~~aLr~-~pd~ii~gEir---d~e~---~~~~l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQ-DPDVILVGEMR---DLET---IRLALTAAETGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred HHHHHhcC-CcCEEEEcCCC---CHHH---HHHHHHHHHcCCEEEEEecCCcHHHHHhHHHhh
Confidence 22333332 33344455553 4443 333343334578899999988766556776555
No 448
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.80 E-value=7e-09 Score=85.00 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=92.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE---CCCCChhhh----ccCcEEEEccC--C
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---LKHLDGTWL----RGNVIGLINQE--P 80 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~---i~~~~~~~~----r~~~i~~v~q~--~ 80 (181)
.+++.+ |.+.+|++++|+|+||+|||||+++|+|+..|+.|.+..-|+. +..+..... ..+.+-++.+. |
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~ 136 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDES 136 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCC
Confidence 578889 9999999999999999999999999999999999888776643 222111111 11223333332 2
Q ss_pred C------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhc---CC-c
Q psy10472 81 V------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESAC---KG-R 143 (181)
Q Consensus 81 ~------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~---~~-~ 143 (181)
. .+-. |+.|++.--.+. .+-.+..++.+.+.+ ...+.| ..+.++..-..+-.++.+.. .| .
T Consensus 137 ~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~--~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~GSI 214 (326)
T cd01136 137 PLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGL--AAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSI 214 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHH--hcCCCCCcCCcChHHHHHhHHHHHHhcCCCCCCe
Confidence 1 1112 556665421111 122233344443322 223445 45777777666666666532 34 4
Q ss_pred EEEEEec-Cchhhh-c-CCeEEEEeCCeEEe
Q psy10472 144 TVLMIAH-RLSTVQ-N-ADLIVVLQAGQIVE 171 (181)
Q Consensus 144 tii~vtH-d~~~~~-~-~d~v~~l~~G~i~~ 171 (181)
|.|.+.. +-+.+. . +|.+.-+-||+++-
T Consensus 215 T~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL 245 (326)
T cd01136 215 TAFYTVLVEGDDLNEPIADAVRSILDGHIVL 245 (326)
T ss_pred eeeeeeeecCCCCCcchHHhhhhccceEEEE
Confidence 6665443 112221 2 56777777888765
No 449
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.77 E-value=8.1e-09 Score=80.80 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=31.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI 53 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i 53 (181)
.+..+++|.||||||||||+++|++++++..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 4567999999999999999999999999999983
No 450
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.77 E-value=6.5e-09 Score=84.04 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=45.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHHh
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRENI 91 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~enl 91 (181)
.-.++||.||||||||||+++|.+++. |.+|.|.+-+.+-...+..... + .++. |+..+++ .++.+.+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~-~-~g~~-~~~g~P~s~D~~~l~ 131 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLK-E-RNLM-KKKGFPESYDMHRLV 131 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHH-H-cCCc-cccCCChhccHHHHH
Confidence 446999999999999999999999987 7889887766554433333222 2 4443 5444332 2444443
No 451
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.75 E-value=2.5e-08 Score=85.46 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=74.4
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcce-EEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSS 97 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~ 97 (181)
+.+|+++.|.|++|+|||||+..++.......+. +++.+++-. .....|..++++.+++..++..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~--~qi~~ra~rlg~~~~~l~~~~e------------ 156 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL--QQIKMRAIRLGLPEPNLYVLSE------------ 156 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH--HHHHHHHHHcCCChHHeEEcCC------------
Confidence 7889999999999999999999998766555454 577775421 1111222235544433222221
Q ss_pred CCHHHHHHHHHHhcccccccc-CC---CCCC-----CHHHHHHHHHHHHHh-c-CCcEEEEEecCchh--------hhc-
Q psy10472 98 VSDEQIEEAAKLANAHGFISE-FP---SGAL-----DNESEKLVQAALESA-C-KGRTVLMIAHRLST--------VQN- 157 (181)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-~P---~~~L-----D~~~~~~i~~~l~~~-~-~~~tii~vtHd~~~--------~~~- 157 (181)
...+.+...++..+..-++-| .- ...+ +....+++...|.++ + .|.|+++++|.... +..
T Consensus 157 ~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~l 236 (454)
T TIGR00416 157 TNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHM 236 (454)
T ss_pred CCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeee
Confidence 122333333333332211111 10 0111 122233444444443 3 48999999996543 445
Q ss_pred CCeEEEEeCCe
Q psy10472 158 ADLIVVLQAGQ 168 (181)
Q Consensus 158 ~d~v~~l~~G~ 168 (181)
+|.|+.|+.++
T Consensus 237 vD~VI~Le~~~ 247 (454)
T TIGR00416 237 VDTVLYFEGDR 247 (454)
T ss_pred ceEEEEEeccC
Confidence 89999998654
No 452
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.74 E-value=8.9e-09 Score=87.37 Aligned_cols=62 Identities=26% Similarity=0.460 Sum_probs=50.5
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCC----ChhhhccCcEEEEccCC
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHL----DGTWLRGNVIGLINQEP 80 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~----~~~~~r~~~i~~v~q~~ 80 (181)
|++.+|++++|+|+||+|||||+++|+++.+|+. |.|-+.|.++... .....+ ..++|+|+.
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~--~~tvVv~~~ 238 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGR--ARSVVIAAP 238 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCC--ceEEEEEEC
Confidence 9999999999999999999999999999999986 8999999987542 111112 267888865
No 453
>PLN02796 D-glycerate 3-kinase
Probab=98.73 E-value=3.7e-09 Score=86.88 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=44.6
Q ss_pred cccceeeEEe---cCCcE-----EEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCC
Q psy10472 10 TILKDFNLRI---PAGQK-----VAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKH 62 (181)
Q Consensus 10 ~vl~~isl~i---~~Ge~-----~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~ 62 (181)
.+++.+++.+ ++|+. ++|+|+||||||||++.|.+++.+. .|.|.++|..+..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~ 143 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTA 143 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccch
Confidence 3677888777 56776 9999999999999999999999875 6889999977644
No 454
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.73 E-value=1.1e-08 Score=86.60 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=45.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~ 59 (181)
..+++++ |++.+|++++|+|+||+|||||+++|+++..|+.|.+.+.|+.
T Consensus 143 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 143 IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 3588999 9999999999999999999999999999999999988877754
No 455
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.73 E-value=1.6e-08 Score=85.88 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=46.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~ 59 (181)
..+++++ +++.+|++++|+|+||+|||||+++++++..++.|.|.+.|+.
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 3589999 9999999999999999999999999999999999999888854
No 456
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.72 E-value=9.4e-09 Score=88.75 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=49.8
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~ 62 (181)
...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+....+..
T Consensus 196 q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 196 QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 3458889999999999999999999999999999999999999999998876643
No 457
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.72 E-value=1.7e-08 Score=85.37 Aligned_cols=158 Identities=21% Similarity=0.195 Sum_probs=90.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-------hhccCcEEEEccC--CC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-------WLRGNVIGLINQE--PV 81 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-------~~r~~~i~~v~q~--~~ 81 (181)
++ |.+|++.+|++++|+|+||+|||||+++|+++.+|+.|.|.+.|+.-...... ....+.+-++.+. |.
T Consensus 130 ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~ 208 (418)
T TIGR03498 130 VI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESP 208 (418)
T ss_pred EE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCH
Confidence 45 46999999999999999999999999999999999999998888754332210 0112223333332 21
Q ss_pred ------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh----c-CC-
Q psy10472 82 ------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA----C-KG- 142 (181)
Q Consensus 82 ------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~----~-~~- 142 (181)
.+.. |+.|++.--... .+-.+...+.+.+.+ ...+.|.. +-.+..-..+-.++++. . .|
T Consensus 209 ~~r~~a~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REisl--~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GS 286 (418)
T TIGR03498 209 LMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGL--AAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGS 286 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHH--hcCCCCccccCCchhhhhhhHHHHHhccCCCCCcc
Confidence 1222 567776432111 122334444444332 12334442 44444444455555442 1 23
Q ss_pred cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472 143 RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 143 ~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
.|.+.+-. +-+.+ .. +|.+.-+-||+|+-
T Consensus 287 IT~~~tVl~~gdd~~dpi~d~~~si~DG~ivL 318 (418)
T TIGR03498 287 ITGIFTVLVDGDDHNEPVADAVRGILDGHIVL 318 (418)
T ss_pred eeeeEEEeccCCCCCCcchhhhheeeeeEEEE
Confidence 45554433 22223 23 78888888898875
No 458
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.71 E-value=2.3e-08 Score=77.99 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=31.4
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHh-cCCCCCcceEEECCE
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLE-RFYDVSSGNITISGV 58 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~-gl~~p~~G~i~i~g~ 58 (181)
=+++|++++|.||+|||||||...++ ....+..+.+++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 48899999999999999999988654 233455566777653
No 459
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.70 E-value=1.6e-08 Score=85.77 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=90.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhc--cCcEEEEccCCCCc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLR--GNVIGLINQEPVLF 83 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r--~~~i~~v~q~~~l~ 83 (181)
..+++++ |.+.+|++++|+|+||+|||||+++|+++..|+.|.+...|+.-..... .... ...-+++++++..+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~ 211 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR 211 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence 3589999 9999999999999999999999999999999999998886554322211 0000 01146777776544
Q ss_pred cc-----------cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHhc---CC-
Q psy10472 84 AT-----------SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESAC---KG- 142 (181)
Q Consensus 84 ~~-----------tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~~---~~- 142 (181)
+. ++.|.+.--... .+-.+..++.+...+ ...+.|. .+-.+..-..+-+++++.. .|
T Consensus 212 p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l--~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GS 289 (422)
T TIGR02546 212 PSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGL--AAGEPPARGGYPPSVFSSLPRLLERAGNGEKGS 289 (422)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCchHHHHHHHHHHH--hcCCCCcccccChhHHHHhHHHHHHhcCCCCCc
Confidence 32 222332211000 112223333333322 1223443 2444554455555555432 24
Q ss_pred cEEEEE-ecCchhhh-c-CCeEEEEeCCeEEe
Q psy10472 143 RTVLMI-AHRLSTVQ-N-ADLIVVLQAGQIVE 171 (181)
Q Consensus 143 ~tii~v-tHd~~~~~-~-~d~v~~l~~G~i~~ 171 (181)
.|.|.+ +.+-+.+. . +|.+.-+-+|.++-
T Consensus 290 IT~~~tv~~~~dd~~~pi~~~~~~i~dg~i~L 321 (422)
T TIGR02546 290 ITALYTVLVEGDDMNDPIADEVRSILDGHIVL 321 (422)
T ss_pred eeEEEEEeccCCCCCCCchhhhhccccEEEEE
Confidence 344433 33333332 2 67777777888764
No 460
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.69 E-value=5.1e-08 Score=75.26 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=30.3
Q ss_pred EEEEECCCCCcHHHHH-HHHhcCCCC-----------------CcceEEECCEECC
Q psy10472 24 KVAIVGSSGNGKSTIV-ALLERFYDV-----------------SSGNITISGVDLK 61 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl-~~l~gl~~p-----------------~~G~i~i~g~~i~ 61 (181)
.++|+|+||||||||+ +.+.|..++ +.|.+.+...+..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~ 66 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA 66 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence 5899999999999999 688888754 4577777766653
No 461
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.68 E-value=7.3e-08 Score=88.71 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=51.8
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEe
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVE 171 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~ 171 (181)
++.|+||++||+.....+.++|++++ +|.|||+|+|+++++..||+|++| ++|+++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~ 576 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVA 576 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEee
Confidence 45678999999999999999999875 589999999999998779999999 8999987
No 462
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.66 E-value=3.6e-08 Score=83.32 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=94.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--------hhhhccCcEEEEccCCC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--------GTWLRGNVIGLINQEPV 81 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--------~~~~r~~~i~~v~q~~~ 81 (181)
.+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.|.+.|+...... ...+ ++.+.++.+...
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~-~~~v~v~~tsd~ 203 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGL-KRSVVVVATSDQ 203 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhccccc-ceEEEEEECCCC
Confidence 578888 999999999999999999999999999999999999888886543221 1111 223555554321
Q ss_pred --------Ccc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHhc---CC-
Q psy10472 82 --------LFA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESAC---KG- 142 (181)
Q Consensus 82 --------l~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~~---~~- 142 (181)
.+. .|+.|++.--... .+-.+..+|.+.+.+ ...+.|.. +..+..-..+-.++.+.. .|
T Consensus 204 ~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEisl--~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GS 281 (413)
T TIGR03497 204 PALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGL--AVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGS 281 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHHHH--hcCCCCCCCCcCchHHHHhHHHHHHhcCCCCcc
Confidence 122 2666766422111 122334444444332 23345554 566655555555565532 24
Q ss_pred cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472 143 RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 143 ~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
.|.+.+-. +-+.+ .. +|.+.-+-||.++-
T Consensus 282 IT~~~tVl~~gdD~~dpi~~~~~si~dg~ivL 313 (413)
T TIGR03497 282 ITGFYTVLVDGDDMNEPIADAVRGILDGHIVL 313 (413)
T ss_pred eeEEEEEEccCCCCCCcchhhccccccEEEEE
Confidence 45553322 22222 22 67777777888764
No 463
>KOG0063|consensus
Probab=98.66 E-value=2.3e-08 Score=83.66 Aligned_cols=147 Identities=21% Similarity=0.293 Sum_probs=85.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE--CCEECCCC-Chhhhcc---C----------cEEEEccCCCCc
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI--SGVDLKHL-DGTWLRG---N----------VIGLINQEPVLF 83 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i--~g~~i~~~-~~~~~r~---~----------~i~~v~q~~~l~ 83 (181)
.+|++.+++|.||-||||-+++++|-.+|.-|...- +++++... ...++.. + ...||-|-|-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 479999999999999999999999999998775321 00111000 0000000 0 011111111112
Q ss_pred cccHHHHhhcCCCCCCHHHHHHHHH--------------------------HhccccccccCCCCCCCHHHHHHHHHHHH
Q psy10472 84 ATSVRENIRYGDSSVSDEQIEEAAK--------------------------LANAHGFISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 84 ~~tv~enl~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
.++|.+.+.--......+++-..++ ....+.++.++|.+.||...+..-...++
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IR 257 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIR 257 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHH
Confidence 2344444422111111111111000 00122245678999999999988888888
Q ss_pred Hhc-CCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 138 SAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 138 ~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
.+. .+.=||+|.||++.+.+ .|-+..+..
T Consensus 258 sl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 258 SLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 764 57889999999999987 898888853
No 464
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=9.3e-08 Score=87.88 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=52.0
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEe
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVE 171 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~ 171 (181)
++.|+|+++||+.....+.++|+++. +|.|||+|+||++.+..||++++| ++|+++.
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~ 574 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVA 574 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEee
Confidence 45678999999999999999999875 589999999999998889999999 8999987
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.65 E-value=1.7e-08 Score=86.58 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=35.7
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG 51 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G 51 (181)
++++.++.++.|.+++++||||+||||++..|++.+.+..|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 45667777889999999999999999999999998766655
No 466
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.65 E-value=1.2e-08 Score=76.87 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=43.7
Q ss_pred HhccccccccCCCCCCC---HHHHHHHHHHHHHhc-CCcEEEEEecCchh---------hhc-CCeEEEEe
Q psy10472 109 LANAHGFISEFPSGALD---NESEKLVQAALESAC-KGRTVLMIAHRLST---------VQN-ADLIVVLQ 165 (181)
Q Consensus 109 ~~~~~~~~~~~P~~~LD---~~~~~~i~~~l~~~~-~~~tii~vtHd~~~---------~~~-~d~v~~l~ 165 (181)
..+..-++-|.|++.+| ...+..+.++++.++ .|.|+|+++|+... +.. ||.++.|+
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 34555577788999998 667777777777654 48999999998764 444 89999887
No 467
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.65 E-value=2.8e-08 Score=86.63 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=48.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR 92 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~ 92 (181)
-+++|.||||||||||++.|++++ |..|.|.++|.... . +.+.+.||+|.+++. ++.+||.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~----~----~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS----S----RIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc----h----hhhCccCCChhhcchhHHHHHHH
Confidence 489999999999999999999997 67899999986411 1 125678899888865 7878873
No 468
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.63 E-value=5.9e-08 Score=80.77 Aligned_cols=89 Identities=26% Similarity=0.296 Sum_probs=53.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCC--Cc-ceEEECCEECCCCChhhhccCcEEEEccCCC-----CccccHHHHh
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDV--SS-GNITISGVDLKHLDGTWLRGNVIGLINQEPV-----LFATSVRENI 91 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-----l~~~tv~enl 91 (181)
+++..++|+||+||||||+|++|++.+.+ .. +.|.....++ .+.....+. ..+++.|... -|...+++.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~-~~~~v~Q~~v~~~~~~~~~~l~~aL 209 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIET-ISASVCQSEIPRHLNNFAAGVRNAL 209 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEecccccc-ccceeeeeeccccccCHHHHHHHHh
Confidence 47899999999999999999999998843 33 3554444333 233222222 2567777532 3445677776
Q ss_pred hcCCC------CCCHHHHHHHHHHh
Q psy10472 92 RYGDS------SVSDEQIEEAAKLA 110 (181)
Q Consensus 92 ~~~~~------~~~~~~~~~~~~~~ 110 (181)
..... ..+.+.+..+++.+
T Consensus 210 R~~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 210 RRKPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred ccCCCEEeeeeeCCHHHHHHHHHHH
Confidence 55321 12344455555553
No 469
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.62 E-value=3.7e-08 Score=79.15 Aligned_cols=55 Identities=25% Similarity=0.386 Sum_probs=39.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~ 81 (181)
+++|+|+||||||||++.|++++++..|.+...+ ++....... +. ..|+.++++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~-~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RK-ETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HH-Hhhccccccc
Confidence 4799999999999999999999999877665543 454433332 22 2677777653
No 470
>PTZ00035 Rad51 protein; Provisional
Probab=98.62 E-value=4.2e-08 Score=81.08 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=50.7
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCC-C-----CcceE-EECCEECCCCChhhhccCcEEEEccCCCCccccHHHHh
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYD-V-----SSGNI-TISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENI 91 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p-----~~G~i-~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl 91 (181)
|+.|+++.|.||+|||||||+..++.... | ..|.+ +|+.+.. .++.+ +..++|.+.+.+.++.+|+
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er-----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER-----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH-----HHHHHHHhCCChHhHhhce
Confidence 78899999999999999999999986554 4 45666 7777643 22222 4444666666666888998
Q ss_pred hcCC
Q psy10472 92 RYGD 95 (181)
Q Consensus 92 ~~~~ 95 (181)
.+..
T Consensus 188 ~~~~ 191 (337)
T PTZ00035 188 AYAR 191 (337)
T ss_pred EEEc
Confidence 8764
No 471
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.61 E-value=4.4e-08 Score=79.28 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=45.4
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l 82 (181)
.+. +++++++|+||+|||||++.|.|...+..|+|.. .|...+.. ...++....+++.+.|.+
T Consensus 158 ~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~-~~~~~~~~~~~liDtPG~ 223 (287)
T cd01854 158 YLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH-RELFPLPGGGLLIDTPGF 223 (287)
T ss_pred hhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce-EEEEEcCCCCEEEECCCC
Confidence 344 5899999999999999999999999999999876 34332221 112222225788888866
No 472
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.60 E-value=2.6e-06 Score=59.65 Aligned_cols=40 Identities=38% Similarity=0.610 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCc-ceEEECCEEC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSS-GNITISGVDL 60 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-G~i~i~g~~i 60 (181)
.+..+.|+||+|+||||+++.++..+.... +-+.++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 367899999999999999999999987765 5666666543
No 473
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.60 E-value=6.4e-08 Score=81.81 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=92.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---h----hhccCcEEEEcc--CC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T----WLRGNVIGLINQ--EP 80 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~----~~r~~~i~~v~q--~~ 80 (181)
.+++.+ |++.+|++++|+|+||+|||||+++|+++..|+.+.+...|+.-..... . ....+.+-++.+ +|
T Consensus 126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~ 204 (411)
T TIGR03496 126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADES 204 (411)
T ss_pred Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCC
Confidence 477777 9999999999999999999999999999999998877666654222111 0 111222333333 22
Q ss_pred C------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHhc-----CC
Q psy10472 81 V------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESAC-----KG 142 (181)
Q Consensus 81 ~------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~~-----~~ 142 (181)
. .+.. |+.|+++.-... .+-.+..++.+.+.+ ...+.|.. +-.+..-..+-+++.+.. .|
T Consensus 205 ~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REisl--~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~G 282 (411)
T TIGR03496 205 PLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIAL--AIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKG 282 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHH--hcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCc
Confidence 1 1222 667777542111 123344445544432 22344554 566665556666665421 23
Q ss_pred -cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472 143 -RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 143 -~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
.|.|.+-. .-+.+ .. +|.+.-+-||.++-
T Consensus 283 SIT~~~tv~~~~dd~~dpi~~~~~~i~dg~ivL 315 (411)
T TIGR03496 283 SITAFYTVLVEGDDQQDPIADAARAILDGHIVL 315 (411)
T ss_pred ceeEEEEEEccCCCCCCcchhhhcccccEEEEE
Confidence 45554433 11222 22 67777777888764
No 474
>PRK05922 type III secretion system ATPase; Validated
Probab=98.60 E-value=7e-08 Score=81.81 Aligned_cols=158 Identities=19% Similarity=0.160 Sum_probs=88.0
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh------hh-hccCcEEEEccC--CC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG------TW-LRGNVIGLINQE--PV 81 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~------~~-~r~~~i~~v~q~--~~ 81 (181)
+++.+ +.+.+|+.++|+|+||+|||||+++|++..+++.|.+...|+.-..... .. ...+.+-++.+. |.
T Consensus 147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~ 225 (434)
T PRK05922 147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETA 225 (434)
T ss_pred eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCH
Confidence 55554 9999999999999999999999999999999999988766653222100 00 011112233221 11
Q ss_pred ------Ccc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHhc---CC-cE
Q psy10472 82 ------LFA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESAC---KG-RT 144 (181)
Q Consensus 82 ------l~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~~---~~-~t 144 (181)
.+. .|+.|+++--... .+-.+..+|.+...+ ...+.|.. +-.+..-..+-.++++.. +| .|
T Consensus 226 ~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl--~~ge~P~~~gyp~svfs~l~~l~ERag~~~~GSIT 303 (434)
T PRK05922 226 PTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVAL--ARGETLSAHHYAASVFHHVSEFTERAGNNDKGSIT 303 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHH--hcCCCCCcCCcCchHHHHhHHHHHhhcCCCCccee
Confidence 111 2566666421111 123344444444433 22344554 444554455555555532 34 45
Q ss_pred EE-EEecCchhhh-cCCeEEEEeCCeEEe
Q psy10472 145 VL-MIAHRLSTVQ-NADLIVVLQAGQIVE 171 (181)
Q Consensus 145 ii-~vtHd~~~~~-~~d~v~~l~~G~i~~ 171 (181)
.+ .|-.+.+... .+|.+.-+-||+|+-
T Consensus 304 ~~~tVl~~~~~~dpi~d~~rsilDGhIvL 332 (434)
T PRK05922 304 ALYAILHYPNHPDIFTDYLKSLLDGHFFL 332 (434)
T ss_pred EEEEEEecCCCCCccccchhhhcCcEEEE
Confidence 55 3334444223 377777778888865
No 475
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.56 E-value=8.2e-08 Score=81.45 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=91.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hh---ccCcEEEEc--cCCC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WL---RGNVIGLIN--QEPV 81 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~---r~~~i~~v~--q~~~ 81 (181)
.+++++ +++.+|++++|+|+||+|||||+++|++...++.+.|...|+.-...... .+ ..+.+-++. +++.
T Consensus 146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp 224 (434)
T PRK08472 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSP 224 (434)
T ss_pred HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCH
Confidence 478888 99999999999999999999999999999999999998888765432211 01 112122222 2221
Q ss_pred ------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh---c-CC-c
Q psy10472 82 ------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA---C-KG-R 143 (181)
Q Consensus 82 ------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~---~-~~-~ 143 (181)
.+.. ++.|.+.--... .+-.+...|.+...+ ...+.|.. +--+..-..+-+++++. . +| .
T Consensus 225 ~~R~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l--~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g~GSI 302 (434)
T PRK08472 225 LMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGL--ALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSI 302 (434)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHH--hcCCCCCccCcCchHHHHHHHHHHHhccCCCCcee
Confidence 1222 566665421111 123344445544433 22344443 55555555566666553 2 23 4
Q ss_pred EEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472 144 TVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 144 tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
|.+.+-. +-+.+ .. +|.+.-+-||.|+-
T Consensus 303 T~~~tVlv~gdD~~dpi~d~~~~i~Dg~ivL 333 (434)
T PRK08472 303 TAFFTVLVEGDDMSDPIADQSRSILDGHIVL 333 (434)
T ss_pred eEeEEEEecCCCCCCCchHHhhhhcceEEEE
Confidence 5554433 22223 22 66777777887764
No 476
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.56 E-value=1.8e-06 Score=79.11 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=45.9
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh----------cCCeEEEEeCCeEEe
Q psy10472 117 SEFPSGAL-DNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ----------NADLIVVLQAGQIVE 171 (181)
Q Consensus 117 ~~~P~~~L-D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~----------~~d~v~~l~~G~i~~ 171 (181)
.|+|+.+| |+...+.+.+.++..+ .|.++|++||+++.+. .|+++++|.+|++..
T Consensus 658 lDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~ 724 (818)
T PRK13830 658 LDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE 724 (818)
T ss_pred EECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence 45588899 6889999999998764 5899999999998763 499999999998754
No 477
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.56 E-value=5.3e-08 Score=74.52 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=43.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
++|.+++|+|+||||||||.+.|.+.+.+. .|.+.++|.++.. .+.. .++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~-~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCS-DLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhh-cCCcCcccH
Confidence 678999999999999999999999977554 4689999977642 1112 267777765
No 478
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.2e-07 Score=90.66 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=43.6
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHH----hcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccC
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALL----ERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQE 79 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l----~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~ 79 (181)
.++|.+| +++|+|||||||||++.+| .|..+|. .|.+++.+.++... ...+. .|.+.|++
T Consensus 23 ~I~F~~~-~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~a-~V~l~F~~ 87 (1311)
T TIGR00606 23 IIDFFSP-LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVRA-QIRLQFRD 87 (1311)
T ss_pred eeecccc-eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--Hhhhh-eeEEEEEc
Confidence 3445454 9999999999999999999 5999996 78888887655432 12222 36777754
No 479
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.54 E-value=7.1e-08 Score=82.06 Aligned_cols=159 Identities=19% Similarity=0.209 Sum_probs=85.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCCChh----hhccCcEEEEcc--CC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDGT----WLRGNVIGLINQ--EP 80 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~~~~----~~r~~~i~~v~q--~~ 80 (181)
.+++.+ |.+.+|++++|+|+||+|||||+++|+|+..|+. |.|-..|.++..+-.. ....+.+-++.+ ++
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~ 235 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDA 235 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCC
Confidence 578888 9999999999999999999999999999988762 4444444433221110 011122333333 22
Q ss_pred CC------cc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh---c--CC
Q psy10472 81 VL------FA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA---C--KG 142 (181)
Q Consensus 81 ~l------~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~---~--~~ 142 (181)
.. +. .|+.|++.--... .+-.+...+.+.+.+ ...+.|.. +-.+..-..+-.++++. . .|
T Consensus 236 p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl--~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~G 313 (451)
T PRK05688 236 PLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIAL--AIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGG 313 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHH--hcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCc
Confidence 11 11 2566666421111 123344445544433 22344443 44444444555555442 1 23
Q ss_pred -cEEEEEecC-chhh-hc-CCeEEEEeCCeEEe
Q psy10472 143 -RTVLMIAHR-LSTV-QN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 143 -~tii~vtHd-~~~~-~~-~d~v~~l~~G~i~~ 171 (181)
.|.|.+..- -+.+ .. +|.+.-+-||+|+-
T Consensus 314 SITai~tVl~~gdD~~dpI~d~~~silDGhIvL 346 (451)
T PRK05688 314 SITAFYTVLSEGDDQQDPIADSARGVLDGHIVL 346 (451)
T ss_pred eeeEEEEEEecCCCCCCchHHHHHhhccEEEEE
Confidence 455554432 2222 22 56666677777764
No 480
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.54 E-value=1.4e-07 Score=90.18 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=42.6
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~ 59 (181)
+.+..|+|.+| +++|+|+|||||||+|++|++++.|..|.+.|++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 45668899986 999999999999999999999999999999999764
No 481
>PRK00098 GTPase RsgA; Reviewed
Probab=98.53 E-value=1e-07 Score=77.58 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=45.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
+|.+++++|+||+|||||++.|.|...+..|+|.. .|+..+... ........+++.+.|.+.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~-~~~~~~~~~~~~DtpG~~ 227 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHV-ELYDLPGGGLLIDTPGFS 227 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccE-EEEEcCCCcEEEECCCcC
Confidence 58999999999999999999999999999999986 444333211 111111256888887665
No 482
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.53 E-value=1.1e-07 Score=80.65 Aligned_cols=50 Identities=28% Similarity=0.404 Sum_probs=44.6
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL 60 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i 60 (181)
.+++. .|.+.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|+.-
T Consensus 145 raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg 194 (432)
T PRK06793 145 KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG 194 (432)
T ss_pred EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence 35666 499999999999999999999999999999999999998887653
No 483
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.53 E-value=9.4e-08 Score=72.07 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=37.4
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc--------CCCCCcceEEECCEE
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER--------FYDVSSGNITISGVD 59 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g--------l~~p~~G~i~i~g~~ 59 (181)
+|+++++..+++++ +|+|++|||||||++.+.+ ...|..+++.+++.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~ 64 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK 64 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence 58888988777755 9999999999999999998 334455666665543
No 484
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.53 E-value=5.2e-08 Score=84.27 Aligned_cols=56 Identities=14% Similarity=0.308 Sum_probs=50.1
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL 63 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~ 63 (181)
...+.+.+++.+..|+.+.|+||||+|||||++.+.++++|.+|.+.+++..+...
T Consensus 197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 34578889999999999999999999999999999999999999999988776543
No 485
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.51 E-value=3.7e-08 Score=73.24 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=41.9
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472 28 VGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY 93 (181)
Q Consensus 28 iG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~ 93 (181)
+|+||||||||+++|++.+ |.+.++|..+. +....++...|+.+|+....+. +..+|..+
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH--PRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC--chhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 6999999999999999987 67888885432 1122333346788887654443 67677665
No 486
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=7.1e-07 Score=84.43 Aligned_cols=44 Identities=30% Similarity=0.263 Sum_probs=36.8
Q ss_pred eeEEecCCcEEEEECCCCCcHHHHHHHHhcC-CCCCcceEEECCE
Q psy10472 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERF-YDVSSGNITISGV 58 (181)
Q Consensus 15 isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~i~i~g~ 58 (181)
++++.+++++++|+|++|+|||||++.+++. ....+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 4677888999999999999999999999554 4556899988763
No 487
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.50 E-value=6.7e-07 Score=70.08 Aligned_cols=143 Identities=13% Similarity=0.191 Sum_probs=70.8
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHh-cCCCCCcceEEECCEECCCCChhhhccC--cEEEEccCC------CCccccHH
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLE-RFYDVSSGNITISGVDLKHLDGTWLRGN--VIGLINQEP------VLFATSVR 88 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~--~i~~v~q~~------~l~~~tv~ 88 (181)
=+++|.++.|.|++|||||||...++ +..+ ..+.+.+-..+ -++..+.++ .+++-..+. .+++..+.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e---~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTE---NTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcC---CCHHHHHHHHHHCCCChhHHHhCCCceEEecccc
Confidence 37899999999999999999999884 3333 23444443321 112211110 122211110 00000000
Q ss_pred HHhhcCCCCCCHHHHHHHHHHh---ccccccccCCCCC---CCHHHHHHHHHHHHHh-cCCcEEEEEecCchh-------
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLA---NAHGFISEFPSGA---LDNESEKLVQAALESA-CKGRTVLMIAHRLST------- 154 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~P~~~---LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~~------- 154 (181)
-+.. .....++.+..+.+.. +..-++-|.|++. .|......+...++.+ ..+.|+++++|+...
T Consensus 97 -~~~~-~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~ 174 (234)
T PRK06067 97 -GFEW-NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSR 174 (234)
T ss_pred -cccc-CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHH
Confidence 0000 0000122222222222 3344566778853 4444444555555543 358899999997654
Q ss_pred hhc-CCeEEEEeC
Q psy10472 155 VQN-ADLIVVLQA 166 (181)
Q Consensus 155 ~~~-~d~v~~l~~ 166 (181)
+.. +|-++.|+.
T Consensus 175 ~~~l~DgvI~L~~ 187 (234)
T PRK06067 175 IRSICDVYLKLRA 187 (234)
T ss_pred HHhheEEEEEEEe
Confidence 333 677777763
No 488
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.49 E-value=8.5e-08 Score=73.62 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=38.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~ 81 (181)
.++|+||+|||||||++.+.+.+++..| +.+...+........+..+ .++++|+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~-~~~~~~~~~ 58 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVK-NSALPPERI 58 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHH-cCCCCcCce
Confidence 6899999999999999999999888655 4444444433333333333 577777653
No 489
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.47 E-value=8.9e-08 Score=74.63 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CcceEEE
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDV--SSGNITI 55 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i 55 (181)
+++|.||||||||||.+.|.+++.+ .++.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999875 4566654
No 490
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.47 E-value=2.6e-07 Score=68.36 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=31.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEEC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF----YDVSSG----NITISGVDL 60 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl----~~p~~G----~i~i~g~~i 60 (181)
-.++|+|++|||||||++.+.|. +.|+.| .+.++|..+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 45999999999999999999997 567788 666666543
No 491
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=1.8e-07 Score=79.30 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=35.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS 49 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~ 49 (181)
.+++.+ |++.+|++++|+|+||+|||||+++|++...++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 366666 999999999999999999999999999998775
No 492
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.43 E-value=6e-07 Score=82.38 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=68.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--------CCC-CcceEEECCEECCCCChhhhccCcEEEEccCCC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--------YDV-SSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--------~~p-~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~ 81 (181)
|-+|+++. +.+.++.|.|||++||||+||.++-. .-| .+.++.+.+.
T Consensus 597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~----------------------- 652 (854)
T PRK05399 597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDR----------------------- 652 (854)
T ss_pred EecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCe-----------------------
Confidence 45666666 56789999999999999999998533 222 2222222221
Q ss_pred Cccc-cHHHHhhcCCCCCC--HHHHHHHHHHhcc-ccccccCC---CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCc
Q psy10472 82 LFAT-SVRENIRYGDSSVS--DEQIEEAAKLANA-HGFISEFP---SGALDNESEKLVQAALESAC-K-GRTVLMIAHRL 152 (181)
Q Consensus 82 l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~P---~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~ 152 (181)
+|.. -..|++.-+.+... ..++..+++.+.- .-++.|+| |+.+|.. ...+.+++.+. . ++++|++||+.
T Consensus 653 I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~ 730 (854)
T PRK05399 653 IFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYH 730 (854)
T ss_pred eeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechH
Confidence 1111 12344433322211 1223344443322 23567888 7777743 33444555443 3 58999999997
Q ss_pred hhhhcCC
Q psy10472 153 STVQNAD 159 (181)
Q Consensus 153 ~~~~~~d 159 (181)
+....++
T Consensus 731 el~~l~~ 737 (854)
T PRK05399 731 ELTELEE 737 (854)
T ss_pred HHHHHhh
Confidence 6655454
No 493
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.43 E-value=3.7e-07 Score=76.35 Aligned_cols=41 Identities=27% Similarity=0.441 Sum_probs=33.8
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECCEE
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISGVD 59 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g~~ 59 (181)
+.+|+++.|.|++|+|||||+..++.......+.+ ++.+++
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 77899999999999999999999988776665666 556653
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.42 E-value=2.3e-07 Score=69.56 Aligned_cols=26 Identities=42% Similarity=0.463 Sum_probs=24.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 495
>PRK09183 transposase/IS protein; Provisional
Probab=98.41 E-value=7.6e-07 Score=71.07 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.|.+++| +++|+.+.|+||+|+|||+|..+|+....
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4667788 99999999999999999999999976543
No 496
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.41 E-value=2.3e-07 Score=70.12 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=28.0
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++++++++.+| +++|.||||+||||++.+|.-.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 47888999887 99999999999999999987554
No 497
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.41 E-value=8.6e-08 Score=82.87 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=75.0
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHH--hcCCCCCcceEEECCEECCCCChhhhc--cCcEEEEccCCC----Cc--cccHH
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGTWLR--GNVIGLINQEPV----LF--ATSVR 88 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l--~gl~~p~~G~i~i~g~~i~~~~~~~~r--~~~i~~v~q~~~----l~--~~tv~ 88 (181)
+++|..+.|.||+|||||||...+ .|..++.+..+++.... ++..++ ...+||-+++.. ++ .....
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~ 93 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVDEGKLFILDASPD 93 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhhcCceEEEecCch
Confidence 789999999999999999999876 46665556667776542 122211 112455444321 11 00000
Q ss_pred HHhhcCCCCCC-HHHHH---HHHHHhcccccccc---CCCCCCC--HHHHHHHHHHHHHhc-CCcEEEEEecCchh----
Q psy10472 89 ENIRYGDSSVS-DEQIE---EAAKLANAHGFISE---FPSGALD--NESEKLVQAALESAC-KGRTVLMIAHRLST---- 154 (181)
Q Consensus 89 enl~~~~~~~~-~~~~~---~~~~~~~~~~~~~~---~P~~~LD--~~~~~~i~~~l~~~~-~~~tii~vtHd~~~---- 154 (181)
........... ..... ..++.-+...+.-+ ......| ...++.++++++.++ .|+|+|++||+.+.
T Consensus 94 ~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~ 173 (484)
T TIGR02655 94 PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIEEYGPI 173 (484)
T ss_pred hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCccccccc
Confidence 00000000011 11111 22222122211111 0111223 346677888887764 58999999998764
Q ss_pred ----h-hc-CCeEEEEe
Q psy10472 155 ----V-QN-ADLIVVLQ 165 (181)
Q Consensus 155 ----~-~~-~d~v~~l~ 165 (181)
+ .. ||.|+.|+
T Consensus 174 ~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 174 ARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccCCceeEeeeeEEEEE
Confidence 2 44 89999886
No 498
>PRK06820 type III secretion system ATPase; Validated
Probab=98.40 E-value=4.4e-07 Score=77.19 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=42.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV 58 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~ 58 (181)
..+++.+ +++.+||.++|+|+||+|||||+++|++...|+.+.+-.-|+
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 3578888 999999999999999999999999999999998765444443
No 499
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.40 E-value=4.9e-06 Score=64.68 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCc---------hhhhc-CCeEEEEe
Q psy10472 121 SGALDNESEKLVQAALESAC-KGRTVLMIAHRL---------STVQN-ADLIVVLQ 165 (181)
Q Consensus 121 ~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~---------~~~~~-~d~v~~l~ 165 (181)
..+.|...++.+.++++.++ .+.|+++++|.. ..+.. ||.|+.|+
T Consensus 122 ~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 122 LFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 33455666777888887764 489999999952 22445 99999996
No 500
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.40 E-value=3.7e-07 Score=77.50 Aligned_cols=40 Identities=33% Similarity=0.528 Sum_probs=37.7
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS 50 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~ 50 (181)
.+++++ |++.+|++++|+|+||+|||||+++|++...++-
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 488999 9999999999999999999999999999998874
Done!