Query psy10472
Match_columns 181
No_of_seqs 292 out of 1893
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:05:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nh6_A ATP-binding cassette SU 100.0 2.2E-44 7.5E-49 291.4 18.7 167 9-177 67-273 (306)
2 2ff7_A Alpha-hemolysin translo 100.0 5.3E-43 1.8E-47 275.9 19.7 166 9-176 22-227 (247)
3 3tui_C Methionine import ATP-b 100.0 2.7E-43 9.1E-48 290.3 16.6 166 9-176 41-248 (366)
4 3tif_A Uncharacterized ABC tra 100.0 3.6E-43 1.2E-47 275.0 14.3 164 9-172 18-226 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 1E-42 3.6E-47 278.0 14.9 166 9-176 21-228 (275)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 2.6E-42 8.7E-47 284.1 17.6 167 8-176 16-223 (359)
7 1ji0_A ABC transporter; ATP bi 100.0 1.9E-42 6.7E-47 271.6 16.1 164 9-172 19-220 (240)
8 3rlf_A Maltose/maltodextrin im 100.0 1.3E-42 4.4E-47 287.7 15.5 166 7-176 14-218 (381)
9 1mv5_A LMRA, multidrug resista 100.0 3.4E-42 1.2E-46 270.6 15.8 167 9-177 15-222 (243)
10 4g1u_C Hemin import ATP-bindin 100.0 6.1E-42 2.1E-46 272.5 16.8 167 8-176 23-232 (266)
11 1g6h_A High-affinity branched- 100.0 3.9E-42 1.3E-46 272.3 15.5 163 9-172 20-234 (257)
12 2ghi_A Transport protein; mult 100.0 2.1E-41 7.2E-46 268.6 19.7 165 9-176 33-237 (260)
13 2ixe_A Antigen peptide transpo 100.0 1.3E-41 4.5E-46 271.2 17.9 163 9-172 32-237 (271)
14 2pcj_A ABC transporter, lipopr 100.0 5.4E-42 1.9E-46 266.5 14.7 164 9-172 17-220 (224)
15 2olj_A Amino acid ABC transpor 100.0 1E-41 3.4E-46 270.7 16.4 163 9-172 37-240 (263)
16 2yyz_A Sugar ABC transporter, 100.0 2.1E-41 7.2E-46 279.0 18.1 164 9-176 16-218 (359)
17 1v43_A Sugar-binding transport 100.0 4.6E-41 1.6E-45 278.2 18.4 164 9-176 24-226 (372)
18 1z47_A CYSA, putative ABC-tran 100.0 2.3E-41 7.7E-46 278.4 16.4 162 8-172 27-227 (355)
19 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-41 5E-46 268.8 14.6 162 9-172 28-227 (256)
20 4a82_A Cystic fibrosis transme 100.0 4.2E-41 1.4E-45 292.9 18.7 168 9-178 354-561 (578)
21 1oxx_K GLCV, glucose, ABC tran 100.0 2.6E-41 8.9E-46 278.2 15.4 166 9-176 16-225 (353)
22 2it1_A 362AA long hypothetical 100.0 3E-41 1E-45 278.4 15.2 165 8-176 15-218 (362)
23 3qf4_A ABC transporter, ATP-bi 100.0 5.4E-41 1.9E-45 292.6 17.4 168 9-178 356-563 (587)
24 3b5x_A Lipid A export ATP-bind 100.0 1.6E-40 5.6E-45 289.4 19.5 168 9-178 356-564 (582)
25 3b60_A Lipid A export ATP-bind 100.0 1.8E-40 6.1E-45 289.2 19.5 168 9-178 356-564 (582)
26 2qi9_C Vitamin B12 import ATP- 100.0 2.8E-40 9.5E-45 260.6 18.3 160 10-171 14-213 (249)
27 3d31_A Sulfate/molybdate ABC t 100.0 7.4E-41 2.5E-45 274.9 15.5 159 11-172 15-209 (348)
28 1g29_1 MALK, maltose transport 100.0 5.9E-41 2E-45 277.7 14.9 164 9-176 16-224 (372)
29 2yl4_A ATP-binding cassette SU 100.0 2E-40 7E-45 289.4 18.6 167 9-177 357-566 (595)
30 3qf4_B Uncharacterized ABC tra 100.0 7.4E-41 2.5E-45 292.4 15.4 168 9-178 368-575 (598)
31 4f4c_A Multidrug resistance pr 100.0 8.8E-41 3E-45 312.4 16.7 170 8-179 1091-1302(1321)
32 1b0u_A Histidine permease; ABC 100.0 1.8E-40 6E-45 263.5 15.9 163 9-172 19-234 (262)
33 2yz2_A Putative ABC transporte 100.0 2.1E-40 7.3E-45 263.6 16.4 159 9-171 20-218 (266)
34 2onk_A Molybdate/tungstate ABC 100.0 3.3E-40 1.1E-44 258.9 16.8 158 11-172 14-208 (240)
35 2ihy_A ABC transporter, ATP-bi 100.0 6.2E-41 2.1E-45 268.3 12.4 163 9-172 34-244 (279)
36 3gd7_A Fusion complex of cysti 100.0 2.6E-40 9E-45 275.1 15.4 166 8-177 33-238 (390)
37 4f4c_A Multidrug resistance pr 100.0 8.3E-40 2.8E-44 305.8 17.9 171 7-179 429-639 (1321)
38 2d2e_A SUFC protein; ABC-ATPas 100.0 6.1E-40 2.1E-44 258.8 11.0 164 9-172 16-225 (250)
39 2zu0_C Probable ATP-dependent 100.0 1.8E-39 6E-44 258.4 12.9 164 9-172 33-246 (267)
40 2pze_A Cystic fibrosis transme 100.0 1.4E-38 4.8E-43 248.0 17.1 149 9-172 21-210 (229)
41 2pjz_A Hypothetical protein ST 100.0 1.4E-38 4.9E-43 252.6 15.3 155 9-172 18-207 (263)
42 2cbz_A Multidrug resistance-as 100.0 2.5E-38 8.4E-43 247.8 15.1 149 9-172 18-209 (237)
43 2nq2_C Hypothetical ABC transp 100.0 2.5E-38 8.6E-43 250.0 14.6 149 8-171 17-208 (253)
44 3g5u_A MCG1178, multidrug resi 100.0 4.4E-38 1.5E-42 293.6 15.4 167 9-177 403-609 (1284)
45 3g5u_A MCG1178, multidrug resi 100.0 2.4E-37 8.3E-42 288.6 18.3 168 9-178 1046-1255(1284)
46 1sgw_A Putative ABC transporte 100.0 6.5E-38 2.2E-42 241.9 8.5 153 10-169 23-210 (214)
47 2bbs_A Cystic fibrosis transme 100.0 1.1E-36 3.6E-41 244.9 15.0 148 9-172 51-239 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 1E-30 3.6E-35 228.2 12.1 147 11-171 371-554 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 8.4E-31 2.9E-35 226.3 10.9 147 11-171 301-484 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.7E-30 1.3E-34 222.1 12.0 143 11-166 283-461 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 9.8E-29 3.3E-33 215.7 15.3 153 10-177 361-555 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-29 3.5E-34 219.5 5.2 154 10-167 36-234 (538)
53 3ux8_A Excinuclease ABC, A sub 100.0 6.6E-29 2.3E-33 219.4 9.7 159 9-172 31-290 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 2.8E-29 9.6E-34 219.2 6.6 154 10-167 106-304 (607)
55 2iw3_A Elongation factor 3A; a 100.0 1.5E-28 5.3E-33 222.4 10.0 149 9-171 686-978 (986)
56 2iw3_A Elongation factor 3A; a 99.9 2.4E-27 8.2E-32 214.7 15.5 149 9-175 448-629 (986)
57 3ux8_A Excinuclease ABC, A sub 99.9 8.5E-28 2.9E-32 212.3 10.7 63 114-177 567-636 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.9 3.6E-27 1.2E-31 203.5 5.6 147 19-168 22-214 (538)
59 3j16_B RLI1P; ribosome recycli 99.9 1.3E-26 4.6E-31 202.2 7.8 156 11-168 93-298 (608)
60 4aby_A DNA repair protein RECN 99.9 1.4E-25 4.8E-30 187.4 11.7 161 10-171 49-379 (415)
61 3pih_A Uvrabc system protein A 99.9 1.2E-24 4.1E-29 196.6 11.5 64 114-178 829-899 (916)
62 1znw_A Guanylate kinase, GMP k 99.9 5.6E-27 1.9E-31 179.3 -5.7 154 5-165 5-202 (207)
63 2vf7_A UVRA2, excinuclease ABC 99.9 2.1E-24 7.1E-29 193.6 9.8 58 115-172 755-819 (842)
64 2r6f_A Excinuclease ABC subuni 99.9 1.5E-24 5.3E-29 195.4 7.9 62 114-176 869-937 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.2E-25 4E-30 190.7 -1.3 146 11-170 127-329 (460)
66 2ygr_A Uvrabc system protein A 99.9 8.3E-24 2.8E-28 191.2 8.4 59 114-172 887-952 (993)
67 2dpy_A FLII, flagellum-specifi 99.9 2E-25 6.7E-30 188.4 -3.3 158 9-171 145-335 (438)
68 3b85_A Phosphate starvation-in 99.9 2.1E-24 7.3E-29 165.6 -1.1 139 9-168 13-171 (208)
69 1tf7_A KAIC; homohexamer, hexa 99.9 8E-24 2.7E-28 182.3 0.7 156 8-166 24-209 (525)
70 4gp7_A Metallophosphoesterase; 99.9 3.8E-24 1.3E-28 159.1 -5.3 130 14-161 1-168 (171)
71 3b9q_A Chloroplast SRP recepto 99.8 2.8E-22 9.5E-27 161.8 4.0 153 13-170 91-285 (302)
72 2v9p_A Replication protein E1; 99.8 1E-23 3.6E-28 170.0 -6.2 130 9-177 113-262 (305)
73 4a74_A DNA repair and recombin 99.8 6.8E-23 2.3E-27 157.5 -1.5 143 18-167 21-200 (231)
74 2ehv_A Hypothetical protein PH 99.8 2.5E-23 8.6E-28 161.8 -4.6 146 18-165 26-206 (251)
75 1tq4_A IIGP1, interferon-induc 99.8 3E-23 1E-27 173.6 -4.9 149 9-167 36-254 (413)
76 1e69_A Chromosome segregation 99.8 3.7E-20 1.3E-24 150.3 11.5 56 114-169 244-301 (322)
77 2obl_A ESCN; ATPase, hydrolase 99.8 5.2E-22 1.8E-26 163.0 0.5 158 9-171 59-246 (347)
78 2og2_A Putative signal recogni 99.8 4.2E-21 1.4E-25 158.0 4.1 154 13-171 148-343 (359)
79 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 2.3E-19 7.9E-24 148.2 12.8 58 114-171 306-364 (365)
80 2pt7_A CAG-ALFA; ATPase, prote 99.8 2.2E-21 7.4E-26 158.4 -0.7 131 11-168 160-291 (330)
81 1z6g_A Guanylate kinase; struc 99.8 3E-22 1E-26 154.4 -6.2 148 10-162 11-205 (218)
82 2eyu_A Twitching motility prot 99.8 2.1E-20 7.2E-25 147.9 2.0 132 9-165 14-146 (261)
83 1s96_A Guanylate kinase, GMP k 99.8 1.1E-20 3.9E-25 145.9 0.1 128 15-157 9-145 (219)
84 3sop_A Neuronal-specific septi 99.8 1.1E-19 3.7E-24 144.5 3.7 124 24-155 4-153 (270)
85 3szr_A Interferon-induced GTP- 99.8 1.1E-19 3.9E-24 158.8 3.6 151 17-171 43-228 (608)
86 1ye8_A Protein THEP1, hypothet 99.8 2.2E-19 7.7E-24 134.4 3.1 131 24-171 2-159 (178)
87 3thx_A DNA mismatch repair pro 99.8 1.4E-18 4.7E-23 157.7 8.5 141 9-171 649-804 (934)
88 1htw_A HI0065; nucleotide-bind 99.8 2E-20 7E-25 137.6 -2.9 78 9-93 20-97 (158)
89 1rj9_A FTSY, signal recognitio 99.7 5.2E-19 1.8E-23 142.7 4.3 149 21-169 101-285 (304)
90 2w0m_A SSO2452; RECA, SSPF, un 99.7 2E-20 6.9E-25 143.5 -4.1 156 9-167 9-192 (235)
91 1cr0_A DNA primase/helicase; R 99.7 3.8E-19 1.3E-23 142.4 2.5 157 9-169 22-237 (296)
92 2gza_A Type IV secretion syste 99.7 2.5E-19 8.6E-24 147.7 0.3 80 12-94 165-248 (361)
93 1lw7_A Transcriptional regulat 99.7 1.6E-20 5.3E-25 154.9 -9.3 151 11-164 157-341 (365)
94 1ewq_A DNA mismatch repair pro 99.7 1.7E-18 5.9E-23 154.4 2.4 130 9-158 566-704 (765)
95 3e70_C DPA, signal recognition 99.7 3.2E-18 1.1E-22 139.4 3.8 150 19-170 126-307 (328)
96 1wb9_A DNA mismatch repair pro 99.7 1.7E-18 5.9E-23 155.1 2.3 146 9-170 595-748 (800)
97 2o8b_B DNA mismatch repair pro 99.7 9.9E-18 3.4E-22 153.5 6.0 137 9-170 769-930 (1022)
98 2yhs_A FTSY, cell division pro 99.7 3.1E-18 1.1E-22 145.5 1.9 158 12-169 283-476 (503)
99 1pzn_A RAD51, DNA repair and r 99.7 4.1E-18 1.4E-22 139.9 1.1 137 12-155 120-289 (349)
100 3thx_B DNA mismatch repair pro 99.7 3.3E-17 1.1E-21 148.4 4.9 137 8-159 659-803 (918)
101 2ewv_A Twitching motility prot 99.6 1.3E-17 4.5E-22 137.9 0.3 124 10-163 126-255 (372)
102 2jeo_A Uridine-cytidine kinase 99.6 1.5E-16 5.2E-21 124.1 6.2 70 8-93 11-81 (245)
103 2i3b_A HCR-ntpase, human cance 99.6 6.5E-18 2.2E-22 127.6 -2.2 140 22-171 1-167 (189)
104 1n0w_A DNA repair protein RAD5 99.6 1.7E-16 5.8E-21 122.6 4.7 139 18-167 20-209 (243)
105 1u0l_A Probable GTPase ENGC; p 99.6 8.2E-17 2.8E-21 129.6 2.9 94 17-112 164-280 (301)
106 1tf7_A KAIC; homohexamer, hexa 99.6 5.4E-16 1.8E-20 133.5 5.8 139 16-168 275-444 (525)
107 3aez_A Pantothenate kinase; tr 99.6 4.5E-16 1.5E-20 126.0 4.9 124 19-167 87-245 (312)
108 2qag_B Septin-6, protein NEDD5 99.6 1.7E-16 5.9E-21 132.9 2.4 78 9-96 28-108 (427)
109 2qnr_A Septin-2, protein NEDD5 99.6 4.5E-16 1.5E-20 125.3 3.9 132 7-153 9-168 (301)
110 3asz_A Uridine kinase; cytidin 99.6 3.3E-16 1.1E-20 119.1 2.7 111 19-152 3-161 (211)
111 3lda_A DNA repair protein RAD5 99.6 1.1E-15 3.6E-20 127.6 4.5 141 18-167 174-363 (400)
112 1lvg_A Guanylate kinase, GMP k 99.6 1.5E-17 5.1E-22 126.2 -6.6 131 20-166 2-173 (198)
113 3jvv_A Twitching mobility prot 99.6 2.2E-16 7.5E-21 129.9 -0.6 126 18-167 119-246 (356)
114 2bdt_A BH3686; alpha-beta prot 99.5 1.7E-16 5.8E-21 118.8 -1.7 137 22-171 2-175 (189)
115 2cvh_A DNA repair and recombin 99.5 3.9E-14 1.3E-18 107.7 9.9 148 11-167 8-185 (220)
116 3euj_A Chromosome partition pr 99.5 2E-15 6.9E-20 128.3 2.7 54 10-64 18-71 (483)
117 2yv5_A YJEQ protein; hydrolase 99.5 4.5E-15 1.6E-19 119.5 4.0 71 18-91 161-240 (302)
118 3tr0_A Guanylate kinase, GMP k 99.5 1.8E-15 6.1E-20 114.2 1.4 73 16-93 1-74 (205)
119 4ad8_A DNA repair protein RECN 99.5 1.7E-14 5.9E-19 123.8 5.7 50 118-167 424-473 (517)
120 2o5v_A DNA replication and rep 99.5 3.2E-13 1.1E-17 111.1 12.5 56 116-177 297-352 (359)
121 2qag_C Septin-7; cell cycle, c 99.5 2.9E-14 9.9E-19 119.5 6.1 131 8-153 23-178 (418)
122 2qm8_A GTPase/ATPase; G protei 99.5 7.9E-16 2.7E-20 125.7 -3.9 75 9-84 42-120 (337)
123 3qkt_A DNA double-strand break 99.5 6.2E-13 2.1E-17 108.5 12.1 51 115-165 276-327 (339)
124 1t9h_A YLOQ, probable GTPase E 99.4 1.3E-14 4.5E-19 117.0 1.5 73 17-92 168-248 (307)
125 1sq5_A Pantothenate kinase; P- 99.4 4E-15 1.4E-19 120.0 -2.2 78 10-93 49-151 (308)
126 1nij_A Hypothetical protein YJ 99.4 6.4E-15 2.2E-19 119.4 -1.3 71 23-94 5-102 (318)
127 1qhl_A Protein (cell division 99.4 7E-15 2.4E-19 113.9 -3.0 63 16-79 22-91 (227)
128 4e22_A Cytidylate kinase; P-lo 99.4 1.8E-13 6.2E-18 107.3 4.5 126 20-165 25-170 (252)
129 2rcn_A Probable GTPase ENGC; Y 99.4 1.7E-13 6E-18 112.5 4.6 98 12-118 206-310 (358)
130 1zp6_A Hypothetical protein AT 99.4 2.6E-14 9E-19 106.7 -0.9 70 18-93 5-74 (191)
131 1sxj_E Activator 1 40 kDa subu 99.4 1.2E-12 4.2E-17 106.4 8.7 121 24-155 38-177 (354)
132 2bbw_A Adenylate kinase 4, AK4 99.4 2.6E-14 9E-19 111.3 -2.0 68 21-93 26-97 (246)
133 3ec2_A DNA replication protein 99.4 1.2E-13 4.2E-18 102.4 1.6 109 16-153 32-144 (180)
134 3lnc_A Guanylate kinase, GMP k 99.3 4.2E-14 1.4E-18 109.1 -1.8 40 9-48 14-54 (231)
135 1nlf_A Regulatory protein REPA 99.3 9.5E-13 3.3E-17 104.3 5.8 128 18-155 26-184 (279)
136 2dr3_A UPF0273 protein PH0284; 99.3 9.2E-14 3.1E-18 107.3 -1.2 153 10-166 10-196 (247)
137 2f1r_A Molybdopterin-guanine d 99.3 6.9E-14 2.4E-18 103.9 -2.2 61 23-83 3-73 (171)
138 2kjq_A DNAA-related protein; s 99.3 1.6E-12 5.5E-17 94.3 4.5 91 11-151 30-124 (149)
139 1pui_A ENGB, probable GTP-bind 99.2 1.3E-13 4.6E-18 104.0 -4.0 44 10-55 16-64 (210)
140 2oap_1 GSPE-2, type II secreti 99.2 4.7E-12 1.6E-16 108.6 3.9 67 10-80 248-314 (511)
141 1p9r_A General secretion pathw 99.2 5.3E-13 1.8E-17 111.8 -2.2 80 11-93 158-257 (418)
142 2x8a_A Nuclear valosin-contain 99.2 2.6E-13 8.9E-18 107.7 -5.2 80 10-94 34-115 (274)
143 3c8u_A Fructokinase; YP_612366 99.2 6.4E-12 2.2E-16 95.4 2.6 41 19-59 19-62 (208)
144 4eun_A Thermoresistant glucoki 99.2 1.2E-12 4.2E-17 98.8 -1.6 71 16-92 23-94 (200)
145 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.3E-13 4.4E-18 114.6 -7.9 144 18-171 16-204 (392)
146 3pih_A Uvrabc system protein A 99.2 1.1E-12 3.7E-17 118.9 -3.2 62 114-176 487-555 (916)
147 1zu4_A FTSY; GTPase, signal re 99.1 2.9E-11 1E-15 98.0 2.0 82 12-93 95-186 (320)
148 2dy1_A Elongation factor G; tr 99.1 5.2E-11 1.8E-15 105.1 3.8 133 16-154 3-138 (665)
149 3a00_A Guanylate kinase, GMP k 99.1 3.2E-11 1.1E-15 90.0 1.6 30 22-51 1-30 (186)
150 2px0_A Flagellar biosynthesis 99.0 4E-10 1.4E-14 90.3 7.8 128 20-171 103-246 (296)
151 1in4_A RUVB, holliday junction 99.0 1.6E-12 5.3E-17 105.8 -8.2 82 9-92 31-123 (334)
152 3kta_A Chromosome segregation 99.0 2.5E-10 8.4E-15 84.4 4.3 40 13-53 18-57 (182)
153 2j41_A Guanylate kinase; GMP, 99.0 2.7E-10 9.2E-15 85.6 4.2 35 17-51 1-35 (207)
154 3ney_A 55 kDa erythrocyte memb 98.9 8.6E-11 2.9E-15 89.0 0.2 69 16-90 13-94 (197)
155 1cke_A CK, MSSA, protein (cyti 98.9 2.5E-10 8.5E-15 87.1 2.0 58 22-80 5-74 (227)
156 1iy2_A ATP-dependent metallopr 98.9 5.1E-12 1.8E-16 100.0 -7.8 77 10-91 63-141 (278)
157 1ls1_A Signal recognition part 98.9 1.6E-09 5.4E-14 86.8 6.5 122 13-149 91-219 (295)
158 3uie_A Adenylyl-sulfate kinase 98.9 1.1E-10 3.8E-15 87.9 -0.5 50 11-61 14-65 (200)
159 2zr9_A Protein RECA, recombina 98.9 1.3E-09 4.3E-14 89.3 5.5 40 18-57 57-97 (349)
160 1ixz_A ATP-dependent metallopr 98.9 8.1E-12 2.8E-16 97.4 -7.4 77 10-91 39-117 (254)
161 1kgd_A CASK, peripheral plasma 98.9 5.9E-10 2E-14 82.7 2.8 35 21-55 4-39 (180)
162 3vaa_A Shikimate kinase, SK; s 98.8 1.3E-09 4.4E-14 82.0 3.6 39 8-46 11-49 (199)
163 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 8.1E-09 2.8E-13 74.6 7.4 57 112-168 82-141 (148)
164 1udx_A The GTP-binding protein 98.8 1.9E-09 6.5E-14 90.2 3.6 35 12-46 147-181 (416)
165 2vp4_A Deoxynucleoside kinase; 98.8 1.3E-09 4.6E-14 83.8 2.3 68 13-84 11-87 (230)
166 2r6f_A Excinuclease ABC subuni 98.8 1.4E-08 4.7E-13 92.3 8.6 58 115-172 528-592 (972)
167 1rz3_A Hypothetical protein rb 98.8 9.9E-10 3.4E-14 82.9 0.7 44 18-61 18-61 (201)
168 3hr8_A Protein RECA; alpha and 98.8 1.2E-08 4.2E-13 83.7 7.1 68 19-90 58-127 (356)
169 1oix_A RAS-related protein RAB 98.8 6.2E-09 2.1E-13 77.5 4.5 37 24-60 31-78 (191)
170 3tau_A Guanylate kinase, GMP k 98.7 5.9E-09 2E-13 79.0 3.7 29 20-48 6-34 (208)
171 3tqc_A Pantothenate kinase; bi 98.7 1.4E-09 4.8E-14 88.1 0.0 46 10-55 74-127 (321)
172 1vma_A Cell division protein F 98.7 2.3E-09 7.9E-14 86.3 1.1 49 14-62 96-144 (306)
173 1odf_A YGR205W, hypothetical 3 98.7 7.7E-09 2.6E-13 82.6 4.0 58 20-94 29-86 (290)
174 2vf7_A UVRA2, excinuclease ABC 98.7 3.5E-08 1.2E-12 88.9 8.6 58 115-172 403-467 (842)
175 3nwj_A ATSK2; P loop, shikimat 98.7 1.1E-09 3.9E-14 85.7 -1.1 39 8-46 31-72 (250)
176 1knq_A Gluconate kinase; ALFA/ 98.7 3.9E-09 1.3E-13 77.4 1.8 38 20-61 6-43 (175)
177 3cr8_A Sulfate adenylyltranfer 98.7 3.8E-09 1.3E-13 91.3 1.8 43 18-60 365-409 (552)
178 2ygr_A Uvrabc system protein A 98.7 2.3E-08 8E-13 91.0 6.8 58 115-172 545-609 (993)
179 1svm_A Large T antigen; AAA+ f 98.7 2.8E-09 9.4E-14 88.2 0.7 44 9-55 156-199 (377)
180 3k1j_A LON protease, ATP-depen 98.6 5.6E-09 1.9E-13 91.1 1.5 65 9-79 47-112 (604)
181 2qt1_A Nicotinamide riboside k 98.6 2.2E-08 7.4E-13 75.5 4.1 31 17-47 16-46 (207)
182 2f9l_A RAB11B, member RAS onco 98.6 2.4E-08 8.1E-13 74.6 3.9 37 24-60 7-54 (199)
183 1w1w_A Structural maintenance 98.6 2.8E-08 9.4E-13 83.3 4.2 49 117-165 361-410 (430)
184 2r6a_A DNAB helicase, replicat 98.6 4.4E-08 1.5E-12 82.7 5.1 48 11-58 192-240 (454)
185 3m6a_A ATP-dependent protease 98.5 1.2E-08 4.3E-13 88.0 0.2 47 11-58 98-144 (543)
186 2p67_A LAO/AO transport system 98.5 8.2E-09 2.8E-13 84.1 -0.9 52 9-60 43-94 (341)
187 1kag_A SKI, shikimate kinase I 98.5 4E-08 1.4E-12 71.6 2.9 33 21-57 3-35 (173)
188 1mky_A Probable GTP-binding pr 98.5 1.2E-07 4.1E-12 79.7 5.3 38 24-61 182-231 (439)
189 4eaq_A DTMP kinase, thymidylat 98.4 8.7E-08 3E-12 73.8 3.4 45 11-56 12-59 (229)
190 1f2t_A RAD50 ABC-ATPase; DNA d 98.4 1.3E-07 4.4E-12 68.2 4.0 32 12-44 14-45 (149)
191 2pez_A Bifunctional 3'-phospho 98.4 4.7E-08 1.6E-12 71.9 1.6 40 20-60 3-44 (179)
192 2dhr_A FTSH; AAA+ protein, hex 98.4 1.7E-08 5.6E-13 86.3 -1.2 77 10-91 54-132 (499)
193 2www_A Methylmalonic aciduria 98.4 4.9E-08 1.7E-12 79.8 1.4 41 20-60 72-112 (349)
194 3kta_B Chromosome segregation 98.4 6.7E-07 2.3E-11 66.1 6.7 55 114-168 89-145 (173)
195 1m7g_A Adenylylsulfate kinase; 98.3 7.3E-08 2.5E-12 72.9 0.7 43 17-59 20-64 (211)
196 2ffh_A Protein (FFH); SRP54, s 98.3 1.5E-07 5.3E-12 78.8 1.6 48 13-62 91-138 (425)
197 3t34_A Dynamin-related protein 98.3 3.3E-07 1.1E-11 74.9 2.8 45 10-57 25-71 (360)
198 1m2o_B GTP-binding protein SAR 98.2 8.4E-07 2.9E-11 65.7 4.6 49 9-58 11-67 (190)
199 2gj8_A MNME, tRNA modification 98.2 8.9E-07 3E-11 64.6 4.6 27 20-46 2-28 (172)
200 3qks_A DNA double-strand break 98.2 6.6E-07 2.3E-11 67.6 4.0 31 12-43 14-44 (203)
201 2qtf_A Protein HFLX, GTP-bindi 98.2 1.1E-06 3.9E-11 72.1 4.9 40 21-60 177-228 (364)
202 1jjv_A Dephospho-COA kinase; P 98.2 7.1E-07 2.4E-11 66.9 3.3 29 24-57 4-32 (206)
203 1j8m_F SRP54, signal recogniti 98.2 1.4E-07 4.9E-12 75.5 -0.7 48 13-61 89-137 (297)
204 1f6b_A SAR1; gtpases, N-termin 98.2 4.1E-07 1.4E-11 67.9 1.5 50 9-59 13-70 (198)
205 2yvu_A Probable adenylyl-sulfa 98.2 5.7E-07 2E-11 66.4 2.3 40 18-57 9-49 (186)
206 3auy_A DNA double-strand break 98.2 3.6E-06 1.2E-10 69.1 7.0 51 115-165 309-359 (371)
207 1y63_A LMAJ004144AAA protein; 98.2 1E-06 3.4E-11 65.2 3.2 32 14-45 2-33 (184)
208 2qor_A Guanylate kinase; phosp 98.1 9.7E-07 3.3E-11 66.3 2.9 30 18-47 8-37 (204)
209 2ce7_A Cell division protein F 98.1 2.6E-06 8.8E-11 72.4 5.1 34 11-46 40-73 (476)
210 2wji_A Ferrous iron transport 98.1 4E-06 1.4E-10 60.4 5.4 24 24-47 5-28 (165)
211 2ohf_A Protein OLA1, GTP-bindi 98.1 1.9E-06 6.6E-11 71.5 3.9 40 18-57 18-68 (396)
212 2wjg_A FEOB, ferrous iron tran 98.1 2.6E-06 8.9E-11 62.3 4.0 22 24-45 9-30 (188)
213 2ga8_A Hypothetical 39.9 kDa p 98.1 2.9E-07 9.8E-12 75.4 -1.6 38 9-46 9-48 (359)
214 2if2_A Dephospho-COA kinase; a 98.1 1.8E-06 6.2E-11 64.5 2.9 22 24-45 3-24 (204)
215 1sxj_C Activator 1 40 kDa subu 98.0 1.3E-07 4.6E-12 76.5 -3.7 48 9-56 31-80 (340)
216 1np6_A Molybdopterin-guanine d 98.0 2.1E-06 7.1E-11 63.5 2.5 37 23-59 7-46 (174)
217 1fnn_A CDC6P, cell division co 98.0 2E-05 6.9E-10 64.0 8.5 29 21-49 41-71 (389)
218 3t61_A Gluconokinase; PSI-biol 98.0 1.8E-06 6.2E-11 64.5 1.7 35 22-60 18-52 (202)
219 2zej_A Dardarin, leucine-rich 98.0 3.9E-06 1.3E-10 61.6 3.4 25 24-48 4-28 (184)
220 2ius_A DNA translocase FTSK; n 98.0 4.4E-06 1.5E-10 71.5 4.1 50 13-62 158-209 (512)
221 2p5t_B PEZT; postsegregational 97.9 2.3E-06 7.8E-11 66.6 1.8 46 12-60 23-68 (253)
222 2e87_A Hypothetical protein PH 97.9 8E-06 2.7E-10 66.7 5.0 120 21-153 166-293 (357)
223 3auy_A DNA double-strand break 97.9 5E-06 1.7E-10 68.3 3.7 31 12-43 16-46 (371)
224 1w1w_A Structural maintenance 97.9 3.2E-05 1.1E-09 64.5 8.5 35 16-50 20-54 (430)
225 3ice_A Transcription terminati 97.9 3E-06 1E-10 70.1 2.2 33 14-46 166-198 (422)
226 1lv7_A FTSH; alpha/beta domain 97.9 4.4E-06 1.5E-10 64.7 2.8 44 12-59 37-80 (257)
227 1ega_A Protein (GTP-binding pr 97.9 3.2E-06 1.1E-10 67.5 2.0 25 22-46 8-32 (301)
228 2qag_A Septin-2, protein NEDD5 97.9 3.6E-06 1.2E-10 69.0 2.1 38 10-53 31-68 (361)
229 3cm0_A Adenylate kinase; ATP-b 97.9 6E-06 2.1E-10 60.6 3.0 25 20-44 2-26 (186)
230 3r20_A Cytidylate kinase; stru 97.8 2.8E-06 9.6E-11 65.7 0.7 32 22-53 9-43 (233)
231 1q3t_A Cytidylate kinase; nucl 97.8 1E-05 3.5E-10 62.1 3.5 27 18-44 12-38 (236)
232 1qhx_A CPT, protein (chloramph 97.8 1.1E-05 3.8E-10 58.7 3.6 26 22-47 3-28 (178)
233 3kb2_A SPBC2 prophage-derived 97.8 1E-05 3.6E-10 58.3 3.3 23 24-46 3-25 (173)
234 3lxx_A GTPase IMAP family memb 97.8 1.6E-05 5.5E-10 60.9 4.1 28 24-51 31-58 (239)
235 1ypw_A Transitional endoplasmi 97.8 8.7E-06 3E-10 73.3 2.5 42 17-60 233-274 (806)
236 2jaq_A Deoxyguanosine kinase; 97.8 1.5E-05 5.1E-10 59.1 3.3 22 24-45 2-23 (205)
237 3ihw_A Centg3; RAS, centaurin, 97.8 3.9E-05 1.3E-09 56.3 5.6 36 24-59 22-66 (184)
238 1kht_A Adenylate kinase; phosp 97.7 1.8E-05 6.1E-10 58.0 3.6 25 22-46 3-27 (192)
239 3kl4_A SRP54, signal recogniti 97.7 7.4E-06 2.5E-10 68.8 1.6 41 21-61 96-136 (433)
240 1gtv_A TMK, thymidylate kinase 97.7 4E-06 1.4E-10 62.9 -0.3 26 24-49 2-27 (214)
241 1ex7_A Guanylate kinase; subst 97.7 1.7E-05 5.7E-10 59.2 3.1 23 24-46 3-25 (186)
242 4ag6_A VIRB4 ATPase, type IV s 97.7 1.2E-05 4.3E-10 66.1 2.6 37 21-57 34-70 (392)
243 1gvn_B Zeta; postsegregational 97.7 2.2E-05 7.6E-10 62.3 3.9 37 19-57 30-66 (287)
244 2rhm_A Putative kinase; P-loop 97.7 1.8E-05 6.2E-10 58.2 3.1 27 20-46 3-29 (193)
245 3lw7_A Adenylate kinase relate 97.7 2E-05 7E-10 56.6 3.2 19 24-42 3-21 (179)
246 1vht_A Dephospho-COA kinase; s 97.7 2.2E-05 7.5E-10 59.2 3.5 23 22-44 4-26 (218)
247 1uf9_A TT1252 protein; P-loop, 97.7 2E-05 6.9E-10 58.4 3.0 31 22-57 8-38 (203)
248 1jal_A YCHF protein; nucleotid 97.7 3.9E-05 1.3E-09 63.0 4.8 36 22-57 2-48 (363)
249 2ze6_A Isopentenyl transferase 97.6 2.3E-05 7.9E-10 61.0 3.0 23 24-46 3-25 (253)
250 3trf_A Shikimate kinase, SK; a 97.6 3.1E-05 1E-09 56.7 3.5 26 21-46 4-29 (185)
251 2v54_A DTMP kinase, thymidylat 97.6 3.6E-05 1.2E-09 57.1 3.7 26 21-46 3-28 (204)
252 3iij_A Coilin-interacting nucl 97.6 2.8E-05 9.7E-10 56.8 3.1 26 20-45 9-34 (180)
253 1fzq_A ADP-ribosylation factor 97.6 2.9E-05 9.8E-10 56.8 3.1 29 23-51 17-49 (181)
254 3cf0_A Transitional endoplasmi 97.6 3.7E-05 1.3E-09 61.2 3.8 39 17-57 44-82 (301)
255 1ly1_A Polynucleotide kinase; 97.6 3.5E-05 1.2E-09 55.9 3.3 22 23-44 3-24 (181)
256 1via_A Shikimate kinase; struc 97.6 3.4E-05 1.1E-09 56.2 3.1 23 24-46 6-28 (175)
257 2plr_A DTMP kinase, probable t 97.6 4.2E-05 1.4E-09 56.9 3.5 28 21-48 3-30 (213)
258 2c95_A Adenylate kinase 1; tra 97.6 4.4E-05 1.5E-09 56.2 3.4 27 20-46 7-33 (196)
259 2wwf_A Thymidilate kinase, put 97.6 4.4E-05 1.5E-09 57.0 3.4 26 20-45 8-33 (212)
260 1nn5_A Similar to deoxythymidy 97.5 5E-05 1.7E-09 56.7 3.4 27 19-45 6-32 (215)
261 1xjc_A MOBB protein homolog; s 97.5 3E-05 1E-09 57.0 2.1 26 23-48 5-30 (169)
262 1nks_A Adenylate kinase; therm 97.5 4.7E-05 1.6E-09 55.7 3.0 23 24-46 3-25 (194)
263 4fcw_A Chaperone protein CLPB; 97.5 4E-05 1.4E-09 60.6 2.7 31 23-53 48-78 (311)
264 3k53_A Ferrous iron transport 97.5 4.6E-05 1.6E-09 59.6 3.0 24 24-47 5-28 (271)
265 1tev_A UMP-CMP kinase; ploop, 97.5 6.1E-05 2.1E-09 55.2 3.4 24 22-45 3-26 (196)
266 1ko7_A HPR kinase/phosphatase; 97.5 9.6E-05 3.3E-09 59.4 4.5 45 10-55 133-181 (314)
267 2z0h_A DTMP kinase, thymidylat 97.5 6.5E-05 2.2E-09 55.3 3.3 23 24-46 2-24 (197)
268 2bwj_A Adenylate kinase 5; pho 97.5 1.8E-05 6.1E-10 58.5 0.1 28 19-46 9-36 (199)
269 1v5w_A DMC1, meiotic recombina 97.5 0.0001 3.4E-09 59.9 4.5 42 18-59 118-166 (343)
270 3ake_A Cytidylate kinase; CMP 97.4 6.9E-05 2.3E-09 55.7 3.1 23 24-46 4-26 (208)
271 2ged_A SR-beta, signal recogni 97.4 7.6E-05 2.6E-09 54.6 3.2 25 23-47 49-73 (193)
272 2vli_A Antibiotic resistance p 97.4 5.7E-05 1.9E-09 55.1 2.4 26 21-46 4-29 (183)
273 1aky_A Adenylate kinase; ATP:A 97.4 9.6E-05 3.3E-09 55.8 3.7 27 20-46 2-28 (220)
274 3llm_A ATP-dependent RNA helic 97.4 6.1E-05 2.1E-09 57.6 2.5 26 19-44 73-98 (235)
275 3cbq_A GTP-binding protein REM 97.4 8.7E-05 3E-09 55.0 3.3 22 24-45 25-46 (195)
276 2z43_A DNA repair and recombin 97.4 0.00013 4.5E-09 58.6 4.6 41 18-58 103-150 (324)
277 3n70_A Transport activator; si 97.4 0.00038 1.3E-08 49.2 6.5 29 20-48 22-50 (145)
278 2erx_A GTP-binding protein DI- 97.4 0.00019 6.4E-09 51.0 4.9 22 24-45 5-26 (172)
279 3fb4_A Adenylate kinase; psych 97.4 9.2E-05 3.1E-09 55.5 3.3 22 24-45 2-23 (216)
280 1zd8_A GTP:AMP phosphotransfer 97.4 9.2E-05 3.2E-09 56.2 3.3 27 20-46 5-31 (227)
281 1z2a_A RAS-related protein RAB 97.4 9.3E-05 3.2E-09 52.5 3.1 22 24-45 7-28 (168)
282 2nzj_A GTP-binding protein REM 97.4 0.00011 3.8E-09 52.6 3.4 23 24-46 6-28 (175)
283 3b1v_A Ferrous iron uptake tra 97.4 0.0001 3.4E-09 58.1 3.4 23 24-46 5-27 (272)
284 3q72_A GTP-binding protein RAD 97.4 8.4E-05 2.9E-09 52.8 2.7 23 24-46 4-26 (166)
285 2w58_A DNAI, primosome compone 97.4 9.5E-05 3.2E-09 54.9 3.0 26 23-48 55-80 (202)
286 2pbr_A DTMP kinase, thymidylat 97.4 0.00011 3.7E-09 53.8 3.3 23 24-46 2-24 (195)
287 3q85_A GTP-binding protein REM 97.4 0.00012 4E-09 52.2 3.3 23 24-46 4-26 (169)
288 2cdn_A Adenylate kinase; phosp 97.3 0.00013 4.5E-09 54.2 3.7 25 21-45 19-43 (201)
289 2dyk_A GTP-binding protein; GT 97.3 0.00011 3.8E-09 51.8 3.2 23 24-46 3-25 (161)
290 1e6c_A Shikimate kinase; phosp 97.3 9.4E-05 3.2E-09 53.4 2.8 23 23-45 3-25 (173)
291 3dl0_A Adenylate kinase; phosp 97.3 0.00011 3.9E-09 55.1 3.3 23 24-46 2-24 (216)
292 1kao_A RAP2A; GTP-binding prot 97.3 0.00012 3.9E-09 51.8 3.2 22 24-45 5-26 (167)
293 1zak_A Adenylate kinase; ATP:A 97.3 9.2E-05 3.1E-09 56.0 2.8 26 21-46 4-29 (222)
294 2qby_A CDC6 homolog 1, cell di 97.3 5.4E-05 1.9E-09 61.1 1.6 30 20-49 43-72 (386)
295 2ce2_X GTPase HRAS; signaling 97.3 0.0001 3.5E-09 52.0 2.8 23 24-46 5-27 (166)
296 1ukz_A Uridylate kinase; trans 97.3 0.00013 4.4E-09 54.2 3.5 26 21-46 14-39 (203)
297 3iby_A Ferrous iron transport 97.3 0.00013 4.6E-09 56.7 3.7 23 24-46 3-25 (256)
298 2pt5_A Shikimate kinase, SK; a 97.3 0.00013 4.4E-09 52.4 3.4 22 24-45 2-23 (168)
299 2lkc_A Translation initiation 97.3 0.00016 5.5E-09 51.9 3.9 25 21-45 7-31 (178)
300 3lxw_A GTPase IMAP family memb 97.3 0.00012 4.2E-09 56.5 3.4 24 24-47 23-46 (247)
301 1u8z_A RAS-related protein RAL 97.3 0.00012 4.2E-09 51.7 3.1 22 24-45 6-27 (168)
302 3tw8_B RAS-related protein RAB 97.3 0.00012 4.1E-09 52.6 3.1 23 24-46 11-33 (181)
303 1z08_A RAS-related protein RAB 97.3 0.00013 4.3E-09 52.0 3.2 22 24-45 8-29 (170)
304 1z0j_A RAB-22, RAS-related pro 97.3 0.00013 4.4E-09 51.9 3.2 23 24-46 8-30 (170)
305 1ky3_A GTP-binding protein YPT 97.3 0.00013 4.5E-09 52.4 3.2 23 24-46 10-32 (182)
306 1zuh_A Shikimate kinase; alpha 97.3 0.00015 5.2E-09 52.2 3.4 23 23-45 8-30 (168)
307 1c1y_A RAS-related protein RAP 97.3 0.00014 4.6E-09 51.6 3.1 22 24-45 5-26 (167)
308 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00014 4.7E-09 52.2 3.2 23 24-46 9-31 (177)
309 2dby_A GTP-binding protein; GD 97.3 0.00013 4.4E-09 60.0 3.3 22 24-45 3-24 (368)
310 1svi_A GTP-binding protein YSX 97.3 0.00012 4.1E-09 53.5 2.8 23 23-45 24-46 (195)
311 1qf9_A UMP/CMP kinase, protein 97.3 0.00013 4.4E-09 53.3 3.0 24 22-45 6-29 (194)
312 1g16_A RAS-related protein SEC 97.3 0.00012 4.3E-09 51.9 2.8 23 24-46 5-27 (170)
313 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00015 5.2E-09 56.4 3.5 25 21-45 3-27 (260)
314 2iyv_A Shikimate kinase, SK; t 97.3 0.00012 4E-09 53.5 2.7 23 23-45 3-25 (184)
315 1ek0_A Protein (GTP-binding pr 97.3 0.0002 6.8E-09 50.8 3.8 23 24-46 5-27 (170)
316 3pqc_A Probable GTP-binding pr 97.3 0.00013 4.3E-09 53.2 2.8 23 24-46 25-47 (195)
317 3bos_A Putative DNA replicatio 97.3 0.00018 6.1E-09 54.2 3.6 27 21-47 51-77 (242)
318 2fn4_A P23, RAS-related protei 97.3 0.00014 4.7E-09 52.3 2.9 22 24-45 11-32 (181)
319 3t1o_A Gliding protein MGLA; G 97.3 0.00016 5.4E-09 52.7 3.2 24 24-47 16-39 (198)
320 1uj2_A Uridine-cytidine kinase 97.3 0.00016 5.3E-09 55.9 3.3 24 22-45 22-45 (252)
321 2grj_A Dephospho-COA kinase; T 97.3 0.00016 5.6E-09 53.9 3.3 23 23-45 13-35 (192)
322 3clv_A RAB5 protein, putative; 97.3 0.00016 5.5E-09 52.8 3.2 22 24-45 9-30 (208)
323 3tlx_A Adenylate kinase 2; str 97.2 0.00018 6.2E-09 55.4 3.5 26 20-45 27-52 (243)
324 1a7j_A Phosphoribulokinase; tr 97.2 8.4E-05 2.9E-09 59.0 1.7 26 21-46 4-29 (290)
325 2cxx_A Probable GTP-binding pr 97.2 0.00015 5E-09 52.7 2.8 23 24-46 3-25 (190)
326 4dsu_A GTPase KRAS, isoform 2B 97.2 0.00017 5.8E-09 52.2 3.2 23 24-46 6-28 (189)
327 3b9p_A CG5977-PA, isoform A; A 97.2 0.00018 6.1E-09 56.6 3.5 26 21-46 53-78 (297)
328 1wf3_A GTP-binding protein; GT 97.2 0.00017 5.7E-09 57.6 3.3 23 24-46 9-31 (301)
329 2hxs_A RAB-26, RAS-related pro 97.2 0.00019 6.6E-09 51.5 3.4 23 24-46 8-30 (178)
330 1r2q_A RAS-related protein RAB 97.2 0.00017 5.9E-09 51.1 3.1 22 24-45 8-29 (170)
331 2oil_A CATX-8, RAS-related pro 97.2 0.00017 5.9E-09 52.7 3.1 22 24-45 27-48 (193)
332 1upt_A ARL1, ADP-ribosylation 97.2 0.00018 6E-09 51.3 3.1 23 23-45 8-30 (171)
333 3bc1_A RAS-related protein RAB 97.2 0.00017 5.9E-09 52.3 3.1 22 24-45 13-34 (195)
334 1r8s_A ADP-ribosylation factor 97.2 0.00019 6.5E-09 50.8 3.1 22 24-45 2-23 (164)
335 1moz_A ARL1, ADP-ribosylation 97.2 0.0001 3.6E-09 53.2 1.7 24 21-44 17-40 (183)
336 2xb4_A Adenylate kinase; ATP-b 97.2 0.0002 6.9E-09 54.3 3.3 23 24-46 2-24 (223)
337 3iev_A GTP-binding protein ERA 97.2 0.00019 6.6E-09 57.3 3.3 24 23-46 11-34 (308)
338 2f6r_A COA synthase, bifunctio 97.2 0.00018 6.2E-09 56.7 3.0 23 22-44 75-97 (281)
339 3con_A GTPase NRAS; structural 97.2 0.0002 6.9E-09 52.2 3.1 22 24-45 23-44 (190)
340 2g6b_A RAS-related protein RAB 97.2 0.0002 7E-09 51.4 3.1 23 24-46 12-34 (180)
341 2a9k_A RAS-related protein RAL 97.2 0.00021 7E-09 51.6 3.1 22 24-45 20-41 (187)
342 2y8e_A RAB-protein 6, GH09086P 97.2 0.00018 6.3E-09 51.5 2.8 22 24-45 16-37 (179)
343 3t5d_A Septin-7; GTP-binding p 97.2 0.00017 5.8E-09 56.5 2.8 23 24-46 10-32 (274)
344 1z0f_A RAB14, member RAS oncog 97.2 0.00021 7.3E-09 51.1 3.1 23 24-46 17-39 (179)
345 2efe_B Small GTP-binding prote 97.2 0.00023 7.8E-09 51.2 3.2 23 24-46 14-36 (181)
346 1jbk_A CLPB protein; beta barr 97.2 0.00028 9.6E-09 50.9 3.6 27 20-46 41-67 (195)
347 1nrj_B SR-beta, signal recogni 97.2 0.00023 7.7E-09 53.2 3.1 23 24-46 14-36 (218)
348 2bme_A RAB4A, RAS-related prot 97.1 0.00022 7.5E-09 51.6 2.8 22 24-45 12-33 (186)
349 1ksh_A ARF-like protein 2; sma 97.1 0.00026 8.9E-09 51.4 3.2 27 20-46 16-42 (186)
350 1vg8_A RAS-related protein RAB 97.1 0.00026 8.8E-09 52.2 3.2 23 24-46 10-32 (207)
351 1l8q_A Chromosomal replication 97.1 0.00013 4.4E-09 58.3 1.5 27 22-48 37-63 (324)
352 3be4_A Adenylate kinase; malar 97.1 0.00026 9E-09 53.4 3.2 26 21-46 4-29 (217)
353 2gf9_A RAS-related protein RAB 97.1 0.00026 8.9E-09 51.6 3.1 23 24-46 24-46 (189)
354 2bov_A RAla, RAS-related prote 97.1 0.00026 8.9E-09 52.1 3.1 22 24-45 16-37 (206)
355 2xtp_A GTPase IMAP family memb 97.1 0.00025 8.5E-09 54.8 3.1 23 24-46 24-46 (260)
356 1m7b_A RND3/RHOE small GTP-bin 97.1 0.00024 8.2E-09 51.7 2.8 22 24-45 9-30 (184)
357 3tkl_A RAS-related protein RAB 97.1 0.00037 1.2E-08 50.9 3.8 23 24-46 18-40 (196)
358 1e4v_A Adenylate kinase; trans 97.1 0.00025 8.6E-09 53.3 3.0 22 24-45 2-23 (214)
359 2fg5_A RAB-22B, RAS-related pr 97.1 0.00025 8.6E-09 52.0 2.9 23 24-46 25-47 (192)
360 3kkq_A RAS-related protein M-R 97.1 0.00038 1.3E-08 50.3 3.8 22 24-45 20-41 (183)
361 1ltq_A Polynucleotide kinase; 97.1 0.00028 9.6E-09 55.6 3.3 22 23-44 3-24 (301)
362 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00029 9.8E-09 50.9 3.1 22 24-45 7-28 (186)
363 1z06_A RAS-related protein RAB 97.1 0.00029 1E-08 51.3 3.2 22 24-45 22-43 (189)
364 2cjw_A GTP-binding protein GEM 97.1 0.00029 9.8E-09 52.0 3.1 22 24-45 8-29 (192)
365 1zbd_A Rabphilin-3A; G protein 97.1 0.00031 1.1E-08 51.7 3.3 23 24-46 10-32 (203)
366 3cnl_A YLQF, putative uncharac 97.1 0.00031 1.1E-08 55.0 3.4 30 23-52 100-129 (262)
367 2gf0_A GTP-binding protein DI- 97.1 0.00026 9E-09 51.8 2.9 22 24-45 10-31 (199)
368 3zvl_A Bifunctional polynucleo 97.1 0.0003 1E-08 58.5 3.5 34 20-57 256-289 (416)
369 2qmh_A HPR kinase/phosphorylas 97.1 0.00044 1.5E-08 52.1 4.1 34 11-45 24-57 (205)
370 3a1s_A Iron(II) transport prot 97.1 0.00031 1.1E-08 54.7 3.4 23 24-46 7-29 (258)
371 4dhe_A Probable GTP-binding pr 97.1 0.00014 4.9E-09 54.4 1.4 24 23-46 30-53 (223)
372 1p5z_B DCK, deoxycytidine kina 97.1 0.00019 6.5E-09 55.7 2.1 29 19-47 21-49 (263)
373 3oes_A GTPase rhebl1; small GT 97.1 0.00027 9.2E-09 52.2 2.8 24 23-46 25-48 (201)
374 3h4m_A Proteasome-activating n 97.1 0.00032 1.1E-08 54.7 3.4 28 19-46 48-75 (285)
375 2il1_A RAB12; G-protein, GDP, 97.1 0.00029 1E-08 51.7 3.0 23 24-46 28-50 (192)
376 4edh_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 53.0 3.4 29 20-48 4-32 (213)
377 3dz8_A RAS-related protein RAB 97.1 0.00028 9.5E-09 51.6 2.8 23 24-46 25-47 (191)
378 2a5j_A RAS-related protein RAB 97.1 0.00032 1.1E-08 51.3 3.1 23 24-46 23-45 (191)
379 2qu8_A Putative nucleolar GTP- 97.1 0.00031 1.1E-08 53.1 3.2 23 23-45 30-52 (228)
380 3v9p_A DTMP kinase, thymidylat 97.1 0.00029 1E-08 54.0 3.0 29 19-47 22-50 (227)
381 4bas_A ADP-ribosylation factor 97.1 0.00032 1.1E-08 51.3 3.1 23 23-45 18-40 (199)
382 3t5g_A GTP-binding protein RHE 97.1 0.00029 9.9E-09 50.8 2.8 21 24-44 8-28 (181)
383 3i8s_A Ferrous iron transport 97.1 0.0003 1E-08 55.1 3.1 23 24-46 5-27 (274)
384 2wsm_A Hydrogenase expression/ 97.1 0.00029 1E-08 52.7 2.9 24 23-46 31-54 (221)
385 1sky_E F1-ATPase, F1-ATP synth 97.0 0.00015 5.1E-09 61.4 1.3 39 17-55 146-184 (473)
386 1zj6_A ADP-ribosylation factor 97.0 0.00033 1.1E-08 51.0 3.0 24 22-45 16-39 (187)
387 2h57_A ADP-ribosylation factor 97.0 0.00024 8.2E-09 51.9 2.3 24 23-46 22-45 (190)
388 3reg_A RHO-like small GTPase; 97.0 0.00034 1.2E-08 51.2 3.1 23 24-46 25-47 (194)
389 3llu_A RAS-related GTP-binding 97.0 0.00036 1.2E-08 51.4 3.2 24 24-47 22-45 (196)
390 2o52_A RAS-related protein RAB 97.0 0.00033 1.1E-08 51.8 3.0 22 24-45 27-48 (200)
391 1ak2_A Adenylate kinase isoenz 97.0 0.00043 1.5E-08 52.7 3.7 26 21-46 15-40 (233)
392 2ew1_A RAS-related protein RAB 97.0 0.00031 1E-08 52.4 2.8 22 24-45 28-49 (201)
393 3lv8_A DTMP kinase, thymidylat 97.0 0.00038 1.3E-08 53.7 3.4 27 21-47 26-52 (236)
394 3d3q_A TRNA delta(2)-isopenten 97.0 0.00035 1.2E-08 56.8 3.3 25 23-47 8-32 (340)
395 1zd9_A ADP-ribosylation factor 97.0 0.00036 1.2E-08 51.0 3.1 22 24-45 24-45 (188)
396 1x3s_A RAS-related protein RAB 97.0 0.00036 1.2E-08 50.8 3.1 22 24-45 17-38 (195)
397 2atv_A RERG, RAS-like estrogen 97.0 0.00037 1.3E-08 51.2 3.2 23 23-45 29-51 (196)
398 1jwy_B Dynamin A GTPase domain 97.0 0.00032 1.1E-08 55.6 3.0 24 24-47 26-49 (315)
399 2p5s_A RAS and EF-hand domain 97.0 0.00037 1.3E-08 51.4 3.1 25 22-46 28-52 (199)
400 2f7s_A C25KG, RAS-related prot 97.0 0.00041 1.4E-08 51.7 3.4 23 24-46 27-49 (217)
401 2h17_A ADP-ribosylation factor 97.0 0.0003 1E-08 51.0 2.6 22 24-45 23-44 (181)
402 2bcg_Y Protein YP2, GTP-bindin 97.0 0.00033 1.1E-08 51.8 2.8 22 24-45 10-31 (206)
403 3bh0_A DNAB-like replicative h 97.0 0.00044 1.5E-08 55.4 3.7 34 11-44 57-90 (315)
404 3cph_A RAS-related protein SEC 97.0 0.00037 1.3E-08 51.6 3.1 24 22-45 20-43 (213)
405 3bwd_D RAC-like GTP-binding pr 97.0 0.00047 1.6E-08 49.6 3.5 24 23-46 9-32 (182)
406 2q3h_A RAS homolog gene family 97.0 0.00043 1.5E-08 50.9 3.3 24 22-45 20-43 (201)
407 3c5c_A RAS-like protein 12; GD 97.0 0.00041 1.4E-08 50.7 3.2 22 24-45 23-44 (187)
408 2iwr_A Centaurin gamma 1; ANK 97.0 0.00029 1E-08 50.7 2.3 22 24-45 9-30 (178)
409 2fv8_A H6, RHO-related GTP-bin 97.0 0.00037 1.3E-08 51.7 2.9 23 24-46 27-49 (207)
410 2p65_A Hypothetical protein PF 97.0 0.00037 1.3E-08 50.2 2.8 28 20-47 41-68 (187)
411 4tmk_A Protein (thymidylate ki 97.0 0.00048 1.7E-08 52.2 3.4 27 21-47 2-28 (213)
412 1gwn_A RHO-related GTP-binding 97.0 0.00038 1.3E-08 52.0 2.8 23 24-46 30-52 (205)
413 2j1l_A RHO-related GTP-binding 97.0 0.00042 1.5E-08 51.8 3.1 22 24-45 36-57 (214)
414 2i1q_A DNA repair and recombin 97.0 0.00043 1.5E-08 55.3 3.3 26 19-44 95-120 (322)
415 2fh5_B SR-beta, signal recogni 97.0 0.00062 2.1E-08 50.6 4.0 23 24-46 9-31 (214)
416 3a8t_A Adenylate isopentenyltr 97.0 0.00047 1.6E-08 55.9 3.5 26 21-46 39-64 (339)
417 2h92_A Cytidylate kinase; ross 97.0 0.00036 1.2E-08 52.4 2.6 25 22-46 3-27 (219)
418 3exa_A TRNA delta(2)-isopenten 96.9 0.0005 1.7E-08 55.3 3.5 25 22-46 3-27 (322)
419 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00053 1.8E-08 52.6 3.5 28 19-46 36-63 (262)
420 2fu5_C RAS-related protein RAB 96.9 0.00029 9.8E-09 50.9 1.9 22 24-45 10-31 (183)
421 3tmk_A Thymidylate kinase; pho 96.9 0.00052 1.8E-08 52.2 3.4 29 20-48 3-31 (216)
422 2aka_B Dynamin-1; fusion prote 96.9 0.0004 1.4E-08 54.5 2.8 24 24-47 28-51 (299)
423 2zts_A Putative uncharacterize 96.9 0.00064 2.2E-08 51.6 3.9 25 19-43 27-51 (251)
424 3crm_A TRNA delta(2)-isopenten 96.9 0.0005 1.7E-08 55.5 3.3 24 23-46 6-29 (323)
425 1njg_A DNA polymerase III subu 96.9 0.00062 2.1E-08 50.7 3.7 24 24-47 47-70 (250)
426 2ocp_A DGK, deoxyguanosine kin 96.9 0.0005 1.7E-08 52.6 3.2 25 22-46 2-26 (241)
427 1u94_A RECA protein, recombina 96.9 0.00037 1.3E-08 57.0 2.6 40 19-58 60-100 (356)
428 3def_A T7I23.11 protein; chlor 96.9 0.00048 1.6E-08 53.5 3.1 23 24-46 38-60 (262)
429 1h65_A Chloroplast outer envel 96.9 0.00047 1.6E-08 53.8 3.0 23 24-46 41-63 (270)
430 3ld9_A DTMP kinase, thymidylat 96.9 0.00057 2E-08 52.3 3.5 28 20-47 19-46 (223)
431 2b6h_A ADP-ribosylation factor 96.9 0.00043 1.5E-08 50.9 2.7 24 22-45 29-52 (192)
432 2gco_A H9, RHO-related GTP-bin 96.9 0.00045 1.5E-08 51.0 2.8 22 24-45 27-48 (201)
433 3umf_A Adenylate kinase; rossm 96.9 0.00055 1.9E-08 52.2 3.2 29 18-46 25-53 (217)
434 2g3y_A GTP-binding protein GEM 96.9 0.0006 2.1E-08 51.4 3.4 22 24-45 39-60 (211)
435 4a1f_A DNAB helicase, replicat 96.9 0.0004 1.4E-08 56.4 2.5 46 11-56 35-80 (338)
436 2atx_A Small GTP binding prote 96.9 0.00052 1.8E-08 50.2 2.9 22 24-45 20-41 (194)
437 4dcu_A GTP-binding protein ENG 96.9 0.00046 1.6E-08 58.0 2.8 22 24-45 25-46 (456)
438 1sxj_D Activator 1 41 kDa subu 96.9 0.00023 7.7E-09 57.1 0.9 37 11-47 45-83 (353)
439 1ypw_A Transitional endoplasmi 96.9 0.00016 5.6E-09 65.0 -0.1 44 15-60 504-547 (806)
440 3tqf_A HPR(Ser) kinase; transf 96.9 0.00093 3.2E-08 49.3 4.0 33 11-44 6-38 (181)
441 2hf9_A Probable hydrogenase ni 96.8 0.00054 1.9E-08 51.4 2.8 24 23-46 39-62 (226)
442 2r62_A Cell division protease 96.8 0.00014 4.9E-09 56.3 -0.6 21 25-45 47-67 (268)
443 4djt_A GTP-binding nuclear pro 96.8 0.00027 9.1E-09 52.8 0.9 22 24-45 13-34 (218)
444 2hup_A RAS-related protein RAB 96.8 0.00065 2.2E-08 50.3 2.9 23 24-46 31-53 (201)
445 3cpj_B GTP-binding protein YPT 96.8 0.00076 2.6E-08 50.7 3.2 23 24-46 15-37 (223)
446 4gzl_A RAS-related C3 botulinu 96.8 0.00066 2.3E-08 50.3 2.8 22 23-44 31-52 (204)
447 3q3j_B RHO-related GTP-binding 96.8 0.00075 2.6E-08 50.5 3.1 22 24-45 29-50 (214)
448 2v3c_C SRP54, signal recogniti 96.8 0.00015 5.2E-09 60.8 -0.8 43 17-59 92-136 (432)
449 3foz_A TRNA delta(2)-isopenten 96.8 0.00086 2.9E-08 53.9 3.5 25 22-46 10-34 (316)
450 2yc2_C IFT27, small RAB-relate 96.8 0.0003 1E-08 51.8 0.8 22 24-45 22-43 (208)
451 2x77_A ADP-ribosylation factor 96.8 0.00046 1.6E-08 50.2 1.7 23 22-44 22-44 (189)
452 2z4s_A Chromosomal replication 96.8 0.00064 2.2E-08 57.0 2.8 25 22-46 130-154 (440)
453 3dm5_A SRP54, signal recogniti 96.7 0.00071 2.4E-08 56.9 2.8 35 21-55 99-133 (443)
454 2j0v_A RAC-like GTP-binding pr 96.7 0.00087 3E-08 49.7 2.8 22 24-45 11-32 (212)
455 3sr0_A Adenylate kinase; phosp 96.7 0.0011 3.6E-08 50.0 3.3 23 24-46 2-24 (206)
456 2orw_A Thymidine kinase; TMTK, 96.7 0.0012 3.9E-08 48.8 3.4 25 21-45 2-27 (184)
457 3eph_A TRNA isopentenyltransfe 96.6 0.00099 3.4E-08 55.3 3.2 24 23-46 3-26 (409)
458 2xau_A PRE-mRNA-splicing facto 96.6 0.00055 1.9E-08 61.3 1.7 32 19-50 106-137 (773)
459 1puj_A YLQF, conserved hypothe 96.6 0.0014 4.7E-08 51.8 3.8 29 23-51 121-149 (282)
460 2chg_A Replication factor C sm 96.6 0.0011 3.8E-08 48.8 3.0 23 24-46 40-62 (226)
461 2v1u_A Cell division control p 96.6 0.00092 3.1E-08 53.9 2.7 28 20-47 42-69 (387)
462 3r7w_A Gtpase1, GTP-binding pr 96.6 0.0013 4.5E-08 52.3 3.6 24 22-45 3-26 (307)
463 2q6t_A DNAB replication FORK h 96.6 0.0012 4E-08 55.3 3.3 36 12-47 190-225 (444)
464 3uk6_A RUVB-like 2; hexameric 96.6 0.0012 4E-08 53.4 3.2 37 21-57 69-105 (368)
465 3syl_A Protein CBBX; photosynt 96.6 0.0014 4.6E-08 51.6 3.5 26 21-46 66-91 (309)
466 4hlc_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 49.3 3.4 26 22-47 2-27 (205)
467 3p32_A Probable GTPase RV1496/ 96.6 0.0011 3.7E-08 54.0 2.8 25 22-46 79-103 (355)
468 1lnz_A SPO0B-associated GTP-bi 96.5 0.0019 6.5E-08 52.4 4.1 33 13-45 149-181 (342)
469 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0016 5.4E-08 52.3 3.4 27 20-46 43-69 (322)
470 3pvs_A Replication-associated 96.5 0.0009 3.1E-08 56.3 2.0 32 18-49 44-77 (447)
471 2hjg_A GTP-binding protein ENG 96.5 0.0013 4.3E-08 55.0 2.8 22 24-45 5-26 (436)
472 3gj0_A GTP-binding nuclear pro 96.5 0.001 3.4E-08 49.8 1.8 22 24-45 17-39 (221)
473 2qgz_A Helicase loader, putati 96.4 0.002 6.7E-08 51.5 3.6 26 22-47 152-177 (308)
474 1d2n_A N-ethylmaleimide-sensit 96.4 0.0016 5.5E-08 50.5 3.0 25 21-45 63-87 (272)
475 1wxq_A GTP-binding protein; st 96.4 0.0016 5.4E-08 54.0 3.1 23 24-46 2-24 (397)
476 1xp8_A RECA protein, recombina 96.4 0.0012 4.1E-08 54.1 2.3 27 19-45 71-97 (366)
477 3t15_A Ribulose bisphosphate c 96.4 0.0019 6.5E-08 51.0 3.4 27 20-46 34-60 (293)
478 3th5_A RAS-related C3 botulinu 95.4 0.00051 1.7E-08 50.8 0.0 23 23-45 31-53 (204)
479 1ofh_A ATP-dependent HSL prote 96.4 0.0018 6.2E-08 50.7 3.2 25 22-46 50-74 (310)
480 3ec1_A YQEH GTPase; atnos1, at 96.4 0.0016 5.5E-08 53.3 2.9 25 21-45 161-185 (369)
481 2bjv_A PSP operon transcriptio 96.4 0.003 1E-07 48.7 4.3 28 21-48 28-55 (265)
482 2x2e_A Dynamin-1; nitration, h 96.4 0.0011 3.8E-08 53.7 1.9 23 24-46 33-55 (353)
483 3eie_A Vacuolar protein sortin 96.4 0.0023 7.9E-08 51.1 3.6 26 21-46 50-75 (322)
484 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0019 6.5E-08 52.1 3.1 28 18-45 119-146 (331)
485 3l0i_B RAS-related protein RAB 96.4 0.00032 1.1E-08 51.7 -1.4 23 24-46 35-57 (199)
486 4a9a_A Ribosome-interacting GT 96.4 0.0021 7.4E-08 52.8 3.4 36 24-59 74-120 (376)
487 3d8b_A Fidgetin-like protein 1 96.3 0.0025 8.5E-08 51.7 3.7 27 20-46 115-141 (357)
488 3hws_A ATP-dependent CLP prote 96.3 0.002 6.9E-08 52.2 3.1 26 21-46 50-75 (363)
489 2qby_B CDC6 homolog 3, cell di 96.3 0.0023 8E-08 51.7 3.5 25 22-46 45-69 (384)
490 2qpt_A EH domain-containing pr 96.3 0.0018 6.3E-08 55.8 2.8 24 23-46 66-89 (550)
491 1x6v_B Bifunctional 3'-phospho 96.3 0.0024 8.1E-08 55.9 3.4 26 21-46 51-76 (630)
492 2qen_A Walker-type ATPase; unk 96.3 0.0028 9.4E-08 50.3 3.6 33 21-57 30-62 (350)
493 3geh_A MNME, tRNA modification 96.3 0.0014 4.7E-08 55.4 1.8 25 21-45 223-247 (462)
494 3h2y_A GTPase family protein; 96.3 0.0017 6E-08 53.1 2.4 25 21-45 159-183 (368)
495 1m8p_A Sulfate adenylyltransfe 96.3 0.0025 8.6E-08 55.2 3.5 26 21-46 395-420 (573)
496 1f5n_A Interferon-induced guan 96.2 0.002 6.7E-08 56.1 2.7 24 23-46 39-62 (592)
497 3pfi_A Holliday junction ATP-d 96.2 0.0026 8.8E-08 50.8 3.0 24 23-46 56-79 (338)
498 3gmt_A Adenylate kinase; ssgci 96.2 0.0031 1.1E-07 48.4 3.3 23 23-45 9-31 (230)
499 2b8t_A Thymidine kinase; deoxy 96.2 0.0033 1.1E-07 48.0 3.5 26 20-45 10-35 (223)
500 1g8f_A Sulfate adenylyltransfe 96.2 0.0028 9.4E-08 54.2 3.2 29 20-48 393-421 (511)
No 1
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.2e-44 Score=291.35 Aligned_cols=167 Identities=44% Similarity=0.747 Sum_probs=147.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++...+|++ ||||||++.+|+.||+
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~-i~~v~Q~~~lf~~Tv~ 145 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH-IGVVPQDTVLFNDTIA 145 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT-EEEECSSCCCCSEEHH
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc-eEEEecCCccCcccHH
Confidence 469999999999999999999999999999999999999999999999999998887777765 9999999999989999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
|||.++......++++++++.+++.+ ++.|+||++||+.+
T Consensus 146 eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~ 225 (306)
T 3nh6_A 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225 (306)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred HHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 99999865556666666665543321 35577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
+..+++.|+.+.+++|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus 226 ~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~-~G~~~ 273 (306)
T 3nh6_A 226 ERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVE-RGRHE 273 (306)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEE-EECHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEE-ECCHH
Confidence 9999999988877899999999999998899999999999998 45544
No 2
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.3e-43 Score=275.88 Aligned_cols=166 Identities=46% Similarity=0.733 Sum_probs=141.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++ .|+|+||++.+|+.||+
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR-QVGVVLQDNVLLNRSII 100 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH-HEEEECSSCCCTTSBHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh-cEEEEeCCCccccccHH
Confidence 56999999999999999999999999999999999999999999999999998766555554 49999999999888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++......+++.++++.+++.+ ++.|+||++||+.+
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99998753344555555555444321 35577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+++.|+++.+|+|||+||||++.+..||++++|++|++++. +++
T Consensus 181 ~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~-g~~ 227 (247)
T 2ff7_A 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ-GKH 227 (247)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 99999999887668999999999998877999999999999873 443
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.7e-43 Score=290.26 Aligned_cols=166 Identities=25% Similarity=0.427 Sum_probs=140.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~ 85 (181)
.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++... .|+ .||||||++.+|+.
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~-~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR-QIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHT-TEEEECSSCCCCTT
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhC-cEEEEeCCCccCCC
Confidence 35899999999999999999999999999999999999999999999999998877543 344 49999999999875
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
||+||+.++.. ... .+++.++++.+++.+ ++.|+||++||+.++
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~ 199 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 99999988521 112 234667777776654 355779999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 130 KLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
..++++|+++. .|+|||+||||++.+.. ||||++|++|++++ .++.
T Consensus 200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~ 248 (366)
T 3tui_C 200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTV 248 (366)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBH
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCH
Confidence 99999999864 38999999999999966 99999999999998 4543
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.6e-43 Score=274.97 Aligned_cols=164 Identities=26% Similarity=0.429 Sum_probs=136.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh---ccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~l~~~ 85 (181)
.++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+ +++.+||+||++.+|+.
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 358999999999999999999999999999999999999999999999999987775432 33359999999999986
Q ss_pred -cHHHHhhcCC-----CCCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCCC
Q psy10472 86 -SVRENIRYGD-----SSVS----DEQIEEAAKLANAHG------------------------------FISEFPSGALD 125 (181)
Q Consensus 86 -tv~enl~~~~-----~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD 125 (181)
||+||+.++. .... .+++.++++.+++.. ++.|+||++||
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9999998741 1112 233455666665532 24567999999
Q ss_pred HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+.++..++++++++. + |+|||+||||++.+..||++++|++|++++.
T Consensus 178 ~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999998874 3 8999999999997766999999999999874
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1e-42 Score=277.96 Aligned_cols=166 Identities=26% Similarity=0.428 Sum_probs=136.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCC--CCcc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP--VLFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~--~l~~ 84 (181)
.++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +...++++ ||||||++ .+|.
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~-ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES-IGIVFQDPDNQLFS 99 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS-EEEECSSGGGTCCS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc-EEEEEcCccccccc
Confidence 3499999999999999999999999999999999999999999999999998521 12234544 99999997 4566
Q ss_pred ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
.||+||+.|+.. ... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 799999988521 122 234566777766544 355779999999999
Q ss_pred HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
..++++++++. + |+|||+||||++.+.. ||+|++|++|++++. +++
T Consensus 180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~-g~~ 228 (275)
T 3gfo_A 180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ-GNP 228 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 99999998864 3 8999999999999965 999999999999984 443
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.6e-42 Score=284.09 Aligned_cols=167 Identities=27% Similarity=0.449 Sum_probs=137.4
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--hhhhccCcEEEEccCCCCccc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~l~~~ 85 (181)
..++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+ ....+ +.||||||++.+|+.
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~-r~ig~vfQ~~~l~p~ 94 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE-RRLGYLVQEGVLFPH 94 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG-SCCEEECTTCCCCTT
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh-CCEEEEeCCCcCCCC
Confidence 356999999999999999999999999999999999999999999999999983221 11223 349999999999985
Q ss_pred -cHHHHhhcCCCC---CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDSS---VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~~---~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
||+||+.|+... .. .++++++++.+++.+ ++.|+|+++||+..+
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r 174 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 999999997432 11 345677777777654 355679999999999
Q ss_pred HHHHHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 130 KLVQAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 130 ~~i~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
..+++.+.++ + .|+|+|+||||++++.. ||||++|++|++++. +++
T Consensus 175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~-g~~ 223 (359)
T 3fvq_A 175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT-ASP 223 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE-eCH
Confidence 9999877654 3 48999999999999865 999999999999874 443
No 7
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-42 Score=271.57 Aligned_cols=164 Identities=23% Similarity=0.345 Sum_probs=137.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....+++.++|+||++.+|+. ||
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 46999999999999999999999999999999999999999999999999987766544433459999999999876 99
Q ss_pred HHHhhcCC-CC--CC--HHHHHHHHHHhc-ccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGD-SS--VS--DEQIEEAAKLAN-AHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~-~~--~~--~~~~~~~~~~~~-~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.++. .. .. .+.++++++.++ +.. ++.|+||++||+.+++.+
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l 178 (240)
T 1ji0_A 99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178 (240)
T ss_dssp HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 99998863 11 11 234556666663 432 355779999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++|+++. +|+|+|+||||++.+.. ||++++|++|++++.
T Consensus 179 ~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99998865 68999999999988755 999999999999873
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-42 Score=287.67 Aligned_cols=166 Identities=27% Similarity=0.448 Sum_probs=140.5
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+...+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...++.. +.||||||++.+|+.
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~---r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE---RGVGMVFQSYALYPHL 90 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG---SCEEEECTTCCCCTTS
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHH---CCEEEEecCCcCCCCC
Confidence 3456999999999999999999999999999999999999999999999999998766542 349999999999986
Q ss_pred cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472 86 SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK 130 (181)
Q Consensus 86 tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~ 130 (181)
||+||+.|+.. ... .+++.++++.+++.. ++.|+|+++||+..+.
T Consensus 91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~ 170 (381)
T 3rlf_A 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170 (381)
T ss_dssp CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 99999998631 122 245667777776654 3557799999999999
Q ss_pred HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+++.|+++. + |+|+|+||||++++.. ||||++|++|++++. +++
T Consensus 171 ~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~-g~~ 218 (381)
T 3rlf_A 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKP 218 (381)
T ss_dssp HHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-eCH
Confidence 9999998864 4 9999999999999865 999999999999884 443
No 9
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-42 Score=270.61 Aligned_cols=167 Identities=41% Similarity=0.663 Sum_probs=141.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.||+
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~l~~~tv~ 93 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS-QIGFVSQDSAIMAGTIR 93 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT-TCCEECCSSCCCCEEHH
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh-hEEEEcCCCccccccHH
Confidence 56999999999999999999999999999999999999999999999999987665444554 49999999999888999
Q ss_pred HHhhcC-CCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYG-DSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~-~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
||+.++ ......+++.++++.+++.+ ++.|+||++||+.
T Consensus 94 enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~ 173 (243)
T 1mv5_A 94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173 (243)
T ss_dssp HHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSS
T ss_pred HHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 999987 33344556667776655432 2446699999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
+++.+++.++++.+|+|+|+||||++.+..||++++|++|++++ .++++
T Consensus 174 ~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~-~g~~~ 222 (243)
T 1mv5_A 174 SESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG-SGKHN 222 (243)
T ss_dssp SCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECC-CSCHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEE-eCCHH
Confidence 99999999988667899999999999887799999999999987 44443
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.1e-42 Score=272.46 Aligned_cols=167 Identities=25% Similarity=0.367 Sum_probs=138.3
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
.+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++ .++|+||++.+++ .|
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR-TRAVMRQYSELAFPFS 101 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHH-HEEEECSCCCCCSCCB
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhh-eEEEEecCCccCCCCC
Confidence 356999999999999999999999999999999999999999999999999998877666554 4999999998754 59
Q ss_pred HHHHhhcCCCC----CCHHHHHHHHHHhcc-----------------------------------ccccccCCCCCCCHH
Q psy10472 87 VRENIRYGDSS----VSDEQIEEAAKLANA-----------------------------------HGFISEFPSGALDNE 127 (181)
Q Consensus 87 v~enl~~~~~~----~~~~~~~~~~~~~~~-----------------------------------~~~~~~~P~~~LD~~ 127 (181)
|+||+.++... ...++++++++.+++ .-++.|+||++||+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 99999886321 123345555544332 224568899999999
Q ss_pred HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
++..++++++++. + ++|||+||||++++.. |||+++|++|++++. ++.
T Consensus 182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~-g~~ 232 (266)
T 4g1u_C 182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC-GTP 232 (266)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 9999999998874 3 5799999999999865 999999999999984 443
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.9e-42 Score=272.33 Aligned_cols=163 Identities=22% Similarity=0.298 Sum_probs=137.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh-hccCcEEEEccCCCCccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW-LRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~~i~~v~q~~~l~~~-t 86 (181)
+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... .++ .++|+||++.+|+. |
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~t 98 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY-GIVRTFQTPQPLKEMT 98 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH-TEEECCCCCGGGGGSB
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC-CEEEEccCCccCCCCc
Confidence 46999999999999999999999999999999999999999999999999987655432 343 49999999988875 9
Q ss_pred HHHHhhcCCCC---------------C-C---HHHHHHHHHHhcccc-----------------------------cccc
Q psy10472 87 VRENIRYGDSS---------------V-S---DEQIEEAAKLANAHG-----------------------------FISE 118 (181)
Q Consensus 87 v~enl~~~~~~---------------~-~---~~~~~~~~~~~~~~~-----------------------------~~~~ 118 (181)
|+||+.++... . . .+++.++++.+++.. ++.|
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999885311 1 1 234566777776543 3557
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 119 FPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 119 ~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+||++||+.+++.++++++++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus 179 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 179 EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 7999999999999999998864 58999999999999865 999999999999873
No 12
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.1e-41 Score=268.56 Aligned_cols=165 Identities=41% Similarity=0.671 Sum_probs=138.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...++++ |+|+||++.+|+.||+
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~l~~~tv~ 110 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI-IGIVPQDTILFNETIK 110 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT-EEEECSSCCCCSEEHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc-EEEEcCCCcccccCHH
Confidence 3699999999999999999999999999999999999987 8999999999876665555554 9999999999988999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++......+++.++++.+++.+ ++.|+||++||+.+
T Consensus 111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190 (260)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 99998743334455555555443211 34567999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~ 176 (181)
++.+++.|+++.+++|+|+||||++.+..||++++|++|++++. +++
T Consensus 191 ~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~-g~~ 237 (260)
T 2ghi_A 191 EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK-GTH 237 (260)
T ss_dssp HHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 99999999887678999999999998877999999999999873 443
No 13
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-41 Score=271.19 Aligned_cols=163 Identities=32% Similarity=0.513 Sum_probs=134.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+...+++ .|+||||++.+|+.||+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~-~i~~v~Q~~~l~~~tv~ 110 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT-QVAAVGQEPLLFGRSFR 110 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH-HEEEECSSCCCCSSBHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc-cEEEEecCCccccccHH
Confidence 56999999999999999999999999999999999999999999999999987665555554 49999999999888999
Q ss_pred HHhhcCCCCCCH-HHH---------HHHHHHh--cccc-----------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYGDSSVSD-EQI---------EEAAKLA--NAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~~~~~~-~~~---------~~~~~~~--~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
||+.++...... +++ .++++.+ ++.. ++.|+||++||+.
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 999987432221 221 1223333 2211 3567799999999
Q ss_pred HHHHHHHHHHHhcC--CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 128 SEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 128 ~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+++.++++|+++.+ |+|||+||||++.+..||++++|++|++++.
T Consensus 191 ~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 191 NQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999998743 8999999999998877999999999999873
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.4e-42 Score=266.51 Aligned_cols=164 Identities=23% Similarity=0.330 Sum_probs=136.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~ 85 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... ++++.++|+||++.+|+.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 56999999999999999999999999999999999999999999999999987665432 232359999999988875
Q ss_pred -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
||+||+.++.. ... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176 (224)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 99999987521 111 234566777776543 355779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+.++++++++. +|+|||+||||++.+..||++++|++|++++.
T Consensus 177 ~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 177 KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999998864 58999999999998855999999999999873
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1e-41 Score=270.75 Aligned_cols=163 Identities=26% Similarity=0.436 Sum_probs=135.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC--CCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK--HLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......+++ .++||||++.+|+.
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~-~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE-EVGMVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH-HEEEECSSCCCCTTS
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC-cEEEEeCCCcCCCCC
Confidence 46999999999999999999999999999999999999999999999999985 122233444 49999999998876
Q ss_pred cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472 86 SVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE 129 (181)
Q Consensus 86 tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~ 129 (181)
||+||+.++. .... .+++.++++.+++.. ++.|+||++||+.++
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 9999998742 1112 234566777776643 355779999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+.++++|+++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus 196 ~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 196 GEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999998864 58999999999999875 999999999999873
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-41 Score=279.05 Aligned_cols=164 Identities=23% Similarity=0.388 Sum_probs=139.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. + +.||||||++.+|+. ||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~-r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--Y-REVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--G-TTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--h-CcEEEEecCcccCCCCCH
Confidence 4689999999999999999999999999999999999999999999999999776543 2 349999999999986 99
Q ss_pred HHHhhcCCCCC--C----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSSV--S----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~~--~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.|+.... . .+++.++++.+++.+ ++.|+|+++||+..++.+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (359)
T 2yyz_A 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM 172 (359)
T ss_dssp HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 99999974321 1 245677888777654 345679999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus 173 ~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~ 218 (359)
T 2yyz_A 173 RAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY-GTP 218 (359)
T ss_dssp HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 99998864 3 8999999999999865 999999999999873 443
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.6e-41 Score=278.17 Aligned_cols=164 Identities=23% Similarity=0.365 Sum_probs=133.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. ++ .||||||++.+|+. ||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR-NISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG-TEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hC-cEEEEecCcccCCCCCH
Confidence 4689999999999999999999999999999999999999999999999999776543 23 49999999999975 99
Q ss_pred HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.|+... .. .+++.++++.+++.+ ++.|+|+++||+..++.+
T Consensus 101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 180 (372)
T 1v43_A 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 180 (372)
T ss_dssp HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 9999997432 22 234667788777654 245679999999999999
Q ss_pred HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus 181 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~ 226 (372)
T 1v43_A 181 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI-GSP 226 (372)
T ss_dssp HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence 99998864 3 8999999999999865 999999999999873 443
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.3e-41 Score=278.36 Aligned_cols=162 Identities=23% Similarity=0.439 Sum_probs=137.7
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
.+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. ++ .||||||++.+|+. |
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KR-NVGLVFQNYALFQHMT 103 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GS-SEEEECGGGCCCTTSC
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChh--hC-cEEEEecCcccCCCCC
Confidence 35699999999999999999999999999999999999999999999999998765432 33 49999999999985 9
Q ss_pred HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
|+||+.|+.. ... .+++.++++.+++.+ ++.|+|+++||+..++.
T Consensus 104 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 183 (355)
T 1z47_A 104 VYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183 (355)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9999998631 112 245667777777654 34567999999999999
Q ss_pred HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++.|+++. + |.|+|+||||++++.. ||++++|++|++++.
T Consensus 184 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 184 LRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999998864 3 8999999999999865 999999999999873
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-41 Score=268.85 Aligned_cols=162 Identities=27% Similarity=0.440 Sum_probs=136.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv 87 (181)
+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ....+++ .+||+||++.+|+. ||
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~-~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK-LISYLPEEAGAYRNMQG 105 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT-TEEEECTTCCCCTTSBH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh-cEEEEcCCCCCCCCCcH
Confidence 569999999999999999999999999999999999999999999999999865 3344454 49999999988876 99
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+||+.++.. ... .+++.++++.+++.. ++.|+||++||+.+++.+
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 185 (256)
T 1vpl_A 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185 (256)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHH
Confidence 999987421 112 234566777776543 355779999999999999
Q ss_pred HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++|+++. +|+|||++|||++.+.. ||++++|++|++++.
T Consensus 186 ~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 186 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 99998864 58999999999999876 999999999999873
No 20
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.2e-41 Score=292.90 Aligned_cols=168 Identities=50% Similarity=0.771 Sum_probs=148.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++ +|||||++.+|+.||+
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~tv~ 432 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ-IGLVQQDNILFSDTVK 432 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT-EEEECSSCCCCSSBHH
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh-eEEEeCCCccCcccHH
Confidence 469999999999999999999999999999999999999999999999999998887777766 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.+...++++.++++.+++.+ ++.|+||++||+.+
T Consensus 433 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 433 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 99999865556666777766554321 35577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.+++..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 513 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~-~g~~~e 561 (578)
T 4a82_A 513 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE-TGTHRE 561 (578)
T ss_dssp HHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE-EECHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence 9999999988877899999999999998899999999999998 455543
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.6e-41 Score=278.23 Aligned_cols=166 Identities=25% Similarity=0.391 Sum_probs=137.9
Q ss_pred cc--ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC---hhhhccCcEEEEccCCCCc
Q psy10472 9 KT--ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD---GTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 9 ~~--vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~r~~~i~~v~q~~~l~ 83 (181)
++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+ ....++ .+|||||++.+|
T Consensus 16 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r-~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR-KIGMVFQTWALY 94 (353)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS-CEEEEETTSCCC
T ss_pred EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC-CEEEEeCCCccC
Confidence 45 999999999999999999999999999999999999999999999999885411 112233 499999999999
Q ss_pred cc-cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 84 AT-SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 84 ~~-tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
+. ||+||+.|+... .. .+++.++++.+++.+ ++.|+|+++||+.
T Consensus 95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 86 999999987432 12 235667787777654 3456799999999
Q ss_pred HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
.++.+++.|+++. + |+|+|+||||++++.. ||++++|++|++++. +++
T Consensus 175 ~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~ 225 (353)
T 1oxx_K 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV-GKP 225 (353)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 9999999998864 3 8999999999999865 999999999999873 443
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-41 Score=278.37 Aligned_cols=165 Identities=28% Similarity=0.439 Sum_probs=139.1
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
.+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. + +.||||||++.+|+. |
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~-r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--D-RNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--G-TTEEEECTTCCCCTTSC
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--H-CcEEEEecCcccCCCCC
Confidence 35699999999999999999999999999999999999999999999999999776543 2 349999999999985 9
Q ss_pred HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472 87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~ 131 (181)
|+||+.|+.. ... .++++++++.+++.+ ++.|+|+++||+..+..
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 171 (362)
T 2it1_A 92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171 (362)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 9999998621 112 235667788777654 34567999999999999
Q ss_pred HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
+.+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus 172 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~ 218 (362)
T 2it1_A 172 VRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV-GTP 218 (362)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence 999998864 3 8999999999999865 999999999999873 443
No 23
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-41 Score=292.64 Aligned_cols=168 Identities=32% Similarity=0.582 Sum_probs=147.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++ ++||||++.+|+.|++
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~ 434 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH-ISAVPQETVLFSGTIK 434 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH-EEEECSSCCCCSEEHH
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh-eEEECCCCcCcCccHH
Confidence 569999999999999999999999999999999999999999999999999988887777765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++.....++++.++++.+++.+ ++.|+||++||+.+
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 435 ENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp HHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 99999866566666666665543321 35577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.+++..+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 515 ~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~-~g~~~e 563 (587)
T 3qf4_A 515 EKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG-FGTHKE 563 (587)
T ss_dssp HHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEE-EECHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 9999999988877999999999999988899999999999998 465544
No 24
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.6e-40 Score=289.37 Aligned_cols=168 Identities=45% Similarity=0.695 Sum_probs=147.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++||||++.+|+.|++
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~tv~ 434 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH-FALVSQNVHLFNDTIA 434 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC-eEEEcCCCccccccHH
Confidence 569999999999999999999999999999999999999999999999999988777777765 9999999999999999
Q ss_pred HHhhcCC-CCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYGD-SSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
||+.++. ...++++++++++.+++.+ ++.|+||++||+.
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 9999975 3445666777776655432 3456799999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
+++.+.+.++++.+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 564 (582)
T 3b5x_A 515 SERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE-RGRHAD 564 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999998777999999999999988899999999999998 465544
No 25
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.8e-40 Score=289.17 Aligned_cols=168 Identities=48% Similarity=0.719 Sum_probs=147.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++||||++.+|+.|++
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~tv~ 434 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ-VALVSQNVHLFNDTVA 434 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT-EEEECSSCCCCSSBHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh-CeEEccCCcCCCCCHH
Confidence 569999999999999999999999999999999999999999999999999988777777765 9999999999999999
Q ss_pred HHhhcCC-CCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 89 ENIRYGD-SSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 89 enl~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
||+.++. ...++++++++++.+++.+ ++.|+||++||+.
T Consensus 435 eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 435 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 9999975 3456677777777655432 3456799999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
+++.+.+.++++.+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 564 (582)
T 3b60_A 515 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE-RGTHSE 564 (582)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE-EECHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE-ecCHHH
Confidence 99999999988767999999999999987899999999999998 455543
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.8e-40 Score=260.57 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=136.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
++|+++||+|++||+++|+||||||||||||+|+|+++|+ |+|.++|+++...+...+++ .++|+||++.+|+. ||+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLAL-HRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHH-HEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhc-eEEEECCCCccCCCCcHH
Confidence 6899999999999999999999999999999999999999 99999999987666555554 49999999988875 999
Q ss_pred HHhhcCCCC-CCHHHHHHHHHHhccc------------------------------------cccccCCCCCCCHHHHHH
Q psy10472 89 ENIRYGDSS-VSDEQIEEAAKLANAH------------------------------------GFISEFPSGALDNESEKL 131 (181)
Q Consensus 89 enl~~~~~~-~~~~~~~~~~~~~~~~------------------------------------~~~~~~P~~~LD~~~~~~ 131 (181)
||+.++... ...++++++++.+++. -++.|+||++||+.+++.
T Consensus 92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~ 171 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 171 (249)
T ss_dssp HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHH
T ss_pred HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHH
Confidence 999986321 1355566676655432 234678999999999999
Q ss_pred HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+.++++++. +|+|||++|||++.+.. ||++++|++|++++
T Consensus 172 l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999998874 58999999999999855 99999999999987
No 27
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.4e-41 Score=274.87 Aligned_cols=159 Identities=25% Similarity=0.426 Sum_probs=136.8
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~e 89 (181)
+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. ++ .||||||++.+|+. ||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KH-DIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HH-TCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh--hC-cEEEEecCcccCCCCCHHH
Confidence 89999999999999999999999999999999999999999999999998765433 33 39999999999986 9999
Q ss_pred HhhcCCC---CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472 90 NIRYGDS---SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 90 nl~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
|+.|+.. ....+++.++++.+++.+ ++.|+|+++||+..++.+.+.|+
T Consensus 92 nl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~ 171 (348)
T 3d31_A 92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171 (348)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 9998621 112366778888877654 34567999999999999999998
Q ss_pred Hhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
++. .|+|+|+||||++++.. ||++++|++|++++.
T Consensus 172 ~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 864 38999999999998865 999999999999873
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.9e-41 Score=277.73 Aligned_cols=164 Identities=23% Similarity=0.390 Sum_probs=137.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC------CChhhhccCcEEEEccCCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH------LDGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~------~~~~~~r~~~i~~v~q~~~l 82 (181)
+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .+.. + +.||||||++.+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~-r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--D-RDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--G-SSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--H-CCEEEEeCCCcc
Confidence 569999999999999999999999999999999999999999999999998865 3332 3 349999999999
Q ss_pred ccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472 83 FAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 83 ~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~ 126 (181)
|+. ||+||+.|+.. ... .+++.++++.+++.+ ++.|+|+++||+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 172 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 975 99999998631 112 234667777777654 355779999999
Q ss_pred HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472 127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH 176 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~ 176 (181)
..++.+.+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus 173 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~ 224 (372)
T 1g29_1 173 KLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSP 224 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe-CCH
Confidence 99999999998864 3 8999999999999865 999999999999873 443
No 29
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2e-40 Score=289.43 Aligned_cols=167 Identities=49% Similarity=0.839 Sum_probs=146.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++||||++.+|+.||+
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~-i~~v~Q~~~l~~~tv~ 435 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK-IGTVSQEPILFSCSIA 435 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHS-EEEECSSCCCCSSBHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhc-eEEEccCCcccCCCHH
Confidence 359999999999999999999999999999999999999999999999999988877777765 9999999999989999
Q ss_pred HHhhcCCCC---CCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCC
Q psy10472 89 ENIRYGDSS---VSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALD 125 (181)
Q Consensus 89 enl~~~~~~---~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD 125 (181)
||+.++... .++++++++++.+++.+ ++.|+||++||
T Consensus 436 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD 515 (595)
T 2yl4_A 436 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515 (595)
T ss_dssp HHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCC
T ss_pred HHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCC
Confidence 999997543 45677778877665422 24567999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 126 NESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
+.+++.+.+.++++.+++|+|+|||+++.+..||+|++|++|++++. ++++
T Consensus 516 ~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~-g~~~ 566 (595)
T 2yl4_A 516 AENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY-GKHE 566 (595)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE-ECSC
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEE-CCHH
Confidence 99999999999987668999999999999877999999999999984 4443
No 30
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.4e-41 Score=292.36 Aligned_cols=168 Identities=46% Similarity=0.823 Sum_probs=145.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++||||++.+|+.||+
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~ 446 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS-IGIVLQDTILFSTTVK 446 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH-EEEECTTCCCCSSBHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc-eEEEeCCCccccccHH
Confidence 469999999999999999999999999999999999999999999999999998887777765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~ 128 (181)
||+.++....++++++++++.+++. -++.|+||++||+.+
T Consensus 447 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 447 ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp HHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 9999985444444555554433221 145678999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
++.+.+.+++..+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus 527 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~-~g~~~~ 575 (598)
T 3qf4_B 527 EKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE-MGKHDE 575 (598)
T ss_dssp HHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEE-CSCHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence 9999999988777999999999999998899999999999998 566554
No 31
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.8e-41 Score=312.40 Aligned_cols=170 Identities=51% Similarity=0.755 Sum_probs=154.6
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
..+||+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++...+|++ |+||||+|.+|++|+
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~-i~~V~Qdp~LF~gTI 1169 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ-IAIVSQEPTLFDCSI 1169 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT-EEEECSSCCCCSEEH
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh-eEEECCCCEeeCccH
Confidence 3579999999999999999999999999999999999999999999999999999999999976 999999999999999
Q ss_pred HHHhhcCC--CCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCC
Q psy10472 88 RENIRYGD--SSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALD 125 (181)
Q Consensus 88 ~enl~~~~--~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD 125 (181)
+|||.|+. ...++++++++++.+++.++ +.|+||++||
T Consensus 1170 reNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A 1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp HHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence 99999984 34578889999988776543 4466999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 126 NESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+++++.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+|+| .|+++++
T Consensus 1250 ~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE-~Gth~eL 1302 (1321)
T 4f4c_A 1250 TESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIE-KGTHTQL 1302 (1321)
T ss_dssp SHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEE-EECHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999998888999999999999999999999999999999 5766654
No 32
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-40 Score=263.54 Aligned_cols=163 Identities=25% Similarity=0.382 Sum_probs=134.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC----------CCh---hhhccCcEEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH----------LDG---TWLRGNVIGL 75 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~----------~~~---~~~r~~~i~~ 75 (181)
+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+. ..+++ .+||
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 97 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT-RLTM 97 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH-HEEE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhc-ceEE
Confidence 469999999999999999999999999999999999999999999999999851 332 12343 4999
Q ss_pred EccCCCCccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhccccc------------------------------cc
Q psy10472 76 INQEPVLFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHGF------------------------------IS 117 (181)
Q Consensus 76 v~q~~~l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~~------------------------------~~ 117 (181)
|||++.+|+. ||+||+.++. .... .+++.++++.+++..+ +.
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 177 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 177 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999988876 9999998742 1112 2345667777665432 44
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 118 EFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 118 ~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+||++||+.+++.++++++++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus 178 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 178 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 66999999999999999998864 58999999999999865 999999999999873
No 33
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-40 Score=263.58 Aligned_cols=159 Identities=28% Similarity=0.434 Sum_probs=135.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CCcccc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VLFATS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l~~~t 86 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .+++ .+||+||++ .+++.|
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~-~i~~v~q~~~~~~~~~t 95 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR-NIGIAFQYPEDQFFAER 95 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG-GEEEECSSGGGGCCCSS
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh-hEEEEeccchhhcCCCc
Confidence 4689999999999999999999999999999999999999999999999987532 3444 499999996 344569
Q ss_pred HHHHhhcCCCC-----CCHHHHHHHHHHhccc--cc-----------------------------cccCCCCCCCHHHHH
Q psy10472 87 VRENIRYGDSS-----VSDEQIEEAAKLANAH--GF-----------------------------ISEFPSGALDNESEK 130 (181)
Q Consensus 87 v~enl~~~~~~-----~~~~~~~~~~~~~~~~--~~-----------------------------~~~~P~~~LD~~~~~ 130 (181)
|+||+.++... ...+++.++++.+++. .+ +.|+||++||+.+++
T Consensus 96 v~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~ 175 (266)
T 2yz2_A 96 VFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175 (266)
T ss_dssp HHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHH
Confidence 99999886321 2245677888888876 42 456799999999999
Q ss_pred HHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 131 LVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.++++|+++. +|+|||+||||++.+.. ||++++|++|++++
T Consensus 176 ~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 176 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999998864 58999999999999876 99999999999987
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-40 Score=258.91 Aligned_cols=158 Identities=25% Similarity=0.406 Sum_probs=133.6
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~e 89 (181)
+|+++||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++ .+||+||++.+|+. ||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~-~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERR-GIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTS-CCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhC-cEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999999999999999986533 2233 49999999998876 9999
Q ss_pred HhhcCCCCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 90 NIRYGDSSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 90 nl~~~~~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
|+.++..... .++++++++.+++.+ ++.|+||++||+.+++.+++++
T Consensus 90 nl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l 169 (240)
T 2onk_A 90 NIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169 (240)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 9998743221 244566777766543 3557799999999999999999
Q ss_pred HHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 137 ESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 137 ~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
+++. + |+|||++|||++.+.. ||++++|++|++++.
T Consensus 170 ~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 170 RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 8864 3 8999999999998865 999999999999873
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.2e-41 Score=268.27 Aligned_cols=163 Identities=23% Similarity=0.376 Sum_probs=134.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC--CCChhhhccCcEEEEccCCCC-cc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK--HLDGTWLRGNVIGLINQEPVL-FA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~~i~~v~q~~~l-~~- 84 (181)
+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...++++ |+|+||++.+ +.
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~-i~~v~Q~~~~~~~~ 112 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH-IGFVSHSLLEKFQE 112 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT-EEEECHHHHTTSCT
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc-EEEEEcCcccccCC
Confidence 46999999999999999999999999999999999999999999999999886 5555555554 9999999854 43
Q ss_pred -ccHHHHhhcCCCC-------CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472 85 -TSVRENIRYGDSS-------VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGAL 124 (181)
Q Consensus 85 -~tv~enl~~~~~~-------~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L 124 (181)
.||+||+.++... .. .+++.++++.+++.. ++.|+||++|
T Consensus 113 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L 192 (279)
T 2ihy_A 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192 (279)
T ss_dssp TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 3999999986311 12 234566777766543 3557799999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEE--EEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472 125 DNESEKLVQAALESAC-KGRTV--LMIAHRLSTVQN-ADLIVVLQAGQIVEM 172 (181)
Q Consensus 125 D~~~~~~i~~~l~~~~-~~~ti--i~vtHd~~~~~~-~d~v~~l~~G~i~~~ 172 (181)
|+.+++.++++|+++. +|+|| |+||||++.+.. ||++++|++|++++.
T Consensus 193 D~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 193 DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999998864 48999 999999999855 999999999999873
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=275.14 Aligned_cols=166 Identities=24% Similarity=0.431 Sum_probs=142.4
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
.+++|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++...+...+++. +|||||++.+|+.||
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~-ig~v~Q~~~lf~~tv 110 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA-FGVIPQKVFIFSGTF 110 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT-EEEESCCCCCCSEEH
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC-EEEEcCCcccCccCH
Confidence 3569999999999999999999999999999999999998 89999999999988887666665 999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE 127 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~ 127 (181)
+||+.+.. ....+++.++++.+++.. ++.|+|+++||+.
T Consensus 111 ~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~ 189 (390)
T 3gd7_A 111 RKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189 (390)
T ss_dssp HHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHH
T ss_pred HHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 99998643 234566677776655432 3456799999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
.+..+.+.|++..+++|+|+||||++.+..||||++|++|++++ .++++
T Consensus 190 ~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~-~g~~~ 238 (390)
T 3gd7_A 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ-YDSIL 238 (390)
T ss_dssp HHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEE-ESSHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence 99999999988767899999999998777799999999999988 45443
No 37
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.3e-40 Score=305.83 Aligned_cols=171 Identities=50% Similarity=0.790 Sum_probs=155.9
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS 86 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t 86 (181)
+.+++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|+++.+++...+|++ ||||+|+|++|++|
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~-i~~v~Q~~~Lf~~T 507 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN-VAVVSQEPALFNCT 507 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH-EEEECSSCCCCSEE
T ss_pred CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc-ccccCCcceeeCCc
Confidence 34679999999999999999999999999999999999999999999999999999999888875 99999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCH
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDN 126 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~ 126 (181)
|+|||.|+.+..+++++.++++.+++.++ +.|+||++||+
T Consensus 508 I~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 508 IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred hhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 99999999877788889999888765442 44669999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472 127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT 179 (181)
Q Consensus 127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 179 (181)
+++..+.+.+..+.+|+|+|+|||+++.+..||+|++|++|+|++ .|+++++
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive-~Gth~eL 639 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE-VGDHRAL 639 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeec-cCCHHHH
Confidence 999999999998888999999999999999999999999999999 5766554
No 38
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.1e-40 Score=258.80 Aligned_cols=164 Identities=25% Similarity=0.337 Sum_probs=135.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+....++..++|+||++.+|+.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 5699999999999999999999999999999999999 8999999999999987766544433458999999998875
Q ss_pred cHHHHhhcCC----C-CCC----HHHHHHHHHHhcc-cc------------------------------ccccCCCCCCC
Q psy10472 86 SVRENIRYGD----S-SVS----DEQIEEAAKLANA-HG------------------------------FISEFPSGALD 125 (181)
Q Consensus 86 tv~enl~~~~----~-~~~----~~~~~~~~~~~~~-~~------------------------------~~~~~P~~~LD 125 (181)
|++||+.++. . ... .+++.++++.+++ .. ++.|+||++||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 9999997642 1 111 2345667776666 22 24466999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEee
Q psy10472 126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEM 172 (181)
Q Consensus 126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~ 172 (181)
+.+++.++++|+++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus 176 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 176 IDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp HHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 999999999998875 58999999999999865 599999999999873
No 39
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.8e-39 Score=258.43 Aligned_cols=164 Identities=27% Similarity=0.372 Sum_probs=134.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+....++..++|+||++.+|+.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~ 112 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGV 112 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccc
Confidence 5699999999999999999999999999999999999 5799999999999987665444323349999999998876
Q ss_pred cHHHHhhcCC---------CCCC----HHHHHHHHHHhccc-c------------------------------ccccCCC
Q psy10472 86 SVRENIRYGD---------SSVS----DEQIEEAAKLANAH-G------------------------------FISEFPS 121 (181)
Q Consensus 86 tv~enl~~~~---------~~~~----~~~~~~~~~~~~~~-~------------------------------~~~~~P~ 121 (181)
|+.+|+.+.. .... .++++++++.+++. . ++.|+||
T Consensus 113 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt 192 (267)
T 2zu0_C 113 SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 192 (267)
T ss_dssp BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999986531 1111 23456677776653 1 2446699
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEee
Q psy10472 122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEM 172 (181)
Q Consensus 122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~ 172 (181)
++||+.+++.++++|+++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus 193 s~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 193 SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 9999999999999999875 48999999999998864 899999999999874
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.4e-38 Score=248.01 Aligned_cols=149 Identities=26% Similarity=0.419 Sum_probs=123.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| + ++|+||++.+|+.||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~-i~~v~q~~~~~~~tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R-ISFCSQFSWIMPGTIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C-EEEECSSCCCCSBCHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E-EEEEecCCcccCCCHH
Confidence 5699999999999999999999999999999999999999999999988 2 8999999999888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
||+.++... ......++++.+++ .-++.|+||++||+.+
T Consensus 87 enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~ 165 (229)
T 2pze_A 87 ENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165 (229)
T ss_dssp HHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHH
T ss_pred HHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHH
Confidence 999987422 22222222222111 1135577999999999
Q ss_pred HHHHHHHH-HHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 129 EKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l-~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
++.+++.+ ....+++|+|++|||++.+..||++++|++|++++.
T Consensus 166 ~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence 99999974 455558999999999998867999999999999873
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-38 Score=252.58 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=133.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCccccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFATSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~~tv 87 (181)
+++|+++||+|+ ||+++|+||||||||||||+|+|++ |++|+|.++|+++... .. ++ .++ |+||++.+ ..|+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~-~i~~~v~Q~~~l-~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YI-RYSTNLPEAYEI-GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CT-TEEECCGGGSCT-TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hh-heEEEeCCCCcc-CCcH
Confidence 569999999999 9999999999999999999999999 9999999999988643 22 33 499 99999988 7799
Q ss_pred HHHhhcCCC--CCCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472 88 RENIRYGDS--SVSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQAA 135 (181)
Q Consensus 88 ~enl~~~~~--~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~~ 135 (181)
+||+.++.. ....++++++++.+++. . ++.|+||++||+.+++.+++.
T Consensus 91 ~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 170 (263)
T 2pjz_A 91 NDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170 (263)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHH
Confidence 999987521 23456677888888776 4 245679999999999999999
Q ss_pred HHHhcCCcEEEEEecCchhhhc-CC-eEEEEeCCeEEee
Q psy10472 136 LESACKGRTVLMIAHRLSTVQN-AD-LIVVLQAGQIVEM 172 (181)
Q Consensus 136 l~~~~~~~tii~vtHd~~~~~~-~d-~v~~l~~G~i~~~ 172 (181)
|+++.+ |+|++|||++.+.. || ++++|++|++++.
T Consensus 171 L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 171 IKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp HHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred HHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 988765 99999999999865 99 9999999999873
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=247.81 Aligned_cols=149 Identities=26% Similarity=0.433 Sum_probs=122.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| + ++|+||++.++..||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~-i~~v~Q~~~~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------S-VAYVPQQAWIQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------C-EEEECSSCCCCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------E-EEEEcCCCcCCCcCHH
Confidence 5699999999999999999999999999999999999999999999998 2 8999999987777999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
||+.++.... .+..+++++.+++ .-++.|+||++||+.+
T Consensus 84 enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 84 ENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162 (237)
T ss_dssp HHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred HHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 9999874321 1122222221111 0135577999999999
Q ss_pred HHHHHHHHH---HhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 129 EKLVQAALE---SACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l~---~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+..+++.+. .+.+|+|+|+||||++.+..||++++|++|++++.
T Consensus 163 ~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp HHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 999999984 34458999999999998877999999999999873
No 43
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.5e-38 Score=249.96 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=125.8
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ ++ .++|+||++.+++ .|
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~-~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ-SIGFVPQFFSSPFAYS 82 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CS-CEEEECSCCCCSSCCB
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------ec-cEEEEcCCCccCCCCC
Confidence 356999999999999999999999999999999999999999999981 22 4999999998885 59
Q ss_pred HHHHhhcCCC-------CCC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472 87 VRENIRYGDS-------SVS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE 127 (181)
Q Consensus 87 v~enl~~~~~-------~~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~ 127 (181)
|+||+.++.. ... .++++++++.+++.+ ++.|+||++||+.
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 9999988631 012 234667777776644 3557799999999
Q ss_pred HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
+++.+++.++++. + |+|||++|||++.+.. ||++++|++|+ ++
T Consensus 163 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 9999999998864 4 8999999999999855 99999999999 76
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.4e-38 Score=293.63 Aligned_cols=167 Identities=51% Similarity=0.784 Sum_probs=147.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++...+|++ ||||||+|.+|++||+
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~ti~ 481 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI-IGVVSQEPVLFATTIA 481 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH-EEEECSSCCCCSSCHH
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh-eEEEcCCCccCCccHH
Confidence 469999999999999999999999999999999999999999999999999999888888765 9999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~ 128 (181)
||+.++......++++++++.+++.+ ++.|+||++||+++
T Consensus 482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~ 561 (1284)
T 3g5u_A 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561 (1284)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 99999865566666766665543221 35577999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
++.+.+.++...+|+|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus 562 ~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~-~g~~~ 609 (1284)
T 3g5u_A 562 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE-QGNHD 609 (1284)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC-EECHH
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHH
Confidence 9999999988777999999999999998899999999999988 45544
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.4e-37 Score=288.62 Aligned_cols=168 Identities=52% Similarity=0.827 Sum_probs=146.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++ ++||||++.+|++||+
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ-LGIVSQEPILFDCSIA 1124 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS-CEEEESSCCCCSSBHH
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc-eEEECCCCccccccHH
Confidence 369999999999999999999999999999999999999999999999999998888777765 9999999999999999
Q ss_pred HHhhcCCC--CCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCH
Q psy10472 89 ENIRYGDS--SVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDN 126 (181)
Q Consensus 89 enl~~~~~--~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~ 126 (181)
||+.++.. ....+++.++++.+++.+ ++.|+||++||+
T Consensus 1125 eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp HHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 99999753 245666666665543221 355779999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472 127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178 (181)
Q Consensus 127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~ 178 (181)
.+++.+.+.+++..+|+|+|+||||++.+..||||++|++|++++ .+++++
T Consensus 1205 ~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~-~g~~~~ 1255 (1284)
T 3g5u_A 1205 ESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE-HGTHQQ 1255 (1284)
T ss_dssp HHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE-EECHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence 999999999988777999999999999997899999999999998 455543
No 46
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-38 Score=241.92 Aligned_cols=153 Identities=18% Similarity=0.308 Sum_probs=127.0
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++. ..++ .++|+||++.+|+. ||+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~-~i~~v~q~~~~~~~~tv~ 96 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKG-KIFFLPEEIIVPRKISVE 96 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGG-GEEEECSSCCCCTTSBHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcC-cEEEEeCCCcCCCCCCHH
Confidence 6999999999999999999999999999999999999999999999999875 2343 49999999998876 999
Q ss_pred HHhhcCC---C-CCCHHHHHHHHHHhcccc----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 89 ENIRYGD---S-SVSDEQIEEAAKLANAHG----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 89 enl~~~~---~-~~~~~~~~~~~~~~~~~~----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
||+.++. . ....+++.++++.+++.. ++.|+||++||+.+++.+++.+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 97 DYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 9998742 1 223566778888877643 2446699999999999999999
Q ss_pred HHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472 137 ESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169 (181)
Q Consensus 137 ~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i 169 (181)
+++. +|+|||++|||++.+.. ||+++++ .|+|
T Consensus 177 ~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 177 LEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 8865 48999999999999876 8887654 4544
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-36 Score=244.89 Aligned_cols=148 Identities=26% Similarity=0.418 Sum_probs=121.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++| .++|+||++.+|+.||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~l~~~tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RISFCSQNSWIMPGTIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------CEEEECSSCCCCSSBHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------EEEEEeCCCccCcccHH
Confidence 5699999999999999999999999999999999999999999999987 28999999999888999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES 128 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~ 128 (181)
||+. +.. .......++++.+++ .-++.|+||++||+.+
T Consensus 117 enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (290)
T 2bbs_A 117 ENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194 (290)
T ss_dssp HHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHH
Confidence 9998 432 222222222222111 1135677999999999
Q ss_pred HHHHHHHH-HHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472 129 EKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172 (181)
Q Consensus 129 ~~~i~~~l-~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~ 172 (181)
+..+++.+ +.+.+|+|||+||||++.+..||++++|++|++++.
T Consensus 195 ~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 99999974 444568999999999998877999999999999873
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1e-30 Score=228.23 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=118.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~e 89 (181)
.|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+. . .++|+||++.++ ..||.+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~-~i~~v~Q~~~~~~~~tv~e 436 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------L-TVAYKPQYIKAEYEGTVYE 436 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------C-CEEEECSSCCCCCSSBHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------e-EEEEEecCccCCCCCcHHH
Confidence 5777788899999999999999999999999999999999999751 1 399999998765 459999
Q ss_pred HhhcC-CC-CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHH
Q psy10472 90 NIRYG-DS-SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALES 138 (181)
Q Consensus 90 nl~~~-~~-~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~ 138 (181)
++.+. .. ....+.+.++++.+++.. ++.|+||++||+.++..++++|++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 437 LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp HHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 88653 10 012344556666655433 356779999999999999999988
Q ss_pred hc--CCcEEEEEecCchhhhc-CCeEEEEeC--CeEEe
Q psy10472 139 AC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVE 171 (181)
Q Consensus 139 ~~--~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i~~ 171 (181)
+. +|.|+|+||||++++.. |||+++|++ |++..
T Consensus 517 l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~ 554 (607)
T 3bk7_A 517 LMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 554 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEe
Confidence 63 58999999999999976 999999986 66665
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=8.4e-31 Score=226.26 Aligned_cols=147 Identities=23% Similarity=0.234 Sum_probs=116.1
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~e 89 (181)
.|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. . .++|+||++..+ ..||.+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~-~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------L-TVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------C-CEEEECSSCCCCCSSBHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------c-eEEEEecCCcCCCCCcHHH
Confidence 4677778889999999999999999999999999999999999751 1 399999998764 459988
Q ss_pred HhhcC-CC-CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHH
Q psy10472 90 NIRYG-DS-SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALES 138 (181)
Q Consensus 90 nl~~~-~~-~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~ 138 (181)
++... .. ....+.+.++++.+++.. ++.|+||++||+.++..++++|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 87643 10 012333444444444322 456789999999999999999988
Q ss_pred hc--CCcEEEEEecCchhhhc-CCeEEEEeC--CeEEe
Q psy10472 139 AC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVE 171 (181)
Q Consensus 139 ~~--~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i~~ 171 (181)
+. .|.|||+||||++++.. |||+++|++ |+++.
T Consensus 447 l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~ 484 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGR 484 (538)
T ss_dssp HHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEee
Confidence 64 48999999999999975 999999986 66665
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=3.7e-30 Score=222.08 Aligned_cols=143 Identities=24% Similarity=0.315 Sum_probs=113.9
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRE 89 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~e 89 (181)
.|..+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ ..++|++|+.... ..||.+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-------------~~i~~~~q~~~~~~~~tv~~ 349 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-------------QILSYKPQRIFPNYDGTVQQ 349 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-------------CCEEEECSSCCCCCSSBHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------eeeEeechhcccccCCCHHH
Confidence 45666778999999999999999999999999999999999998654 1389999987654 469999
Q ss_pred HhhcCCCC---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472 90 NIRYGDSS---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 90 nl~~~~~~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
|+.+.... .....++++++.+++.. ++.|+||++||+.++..++++|+
T Consensus 350 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~ 429 (538)
T 3ozx_A 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK 429 (538)
T ss_dssp HHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 98763211 11223344444443322 46688999999999999999998
Q ss_pred Hhc--CCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472 138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA 166 (181)
Q Consensus 138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~ 166 (181)
++. .|+|||+||||++++.. ||||++|++
T Consensus 430 ~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 430 RVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 864 48999999999999976 999999986
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.8e-29 Score=215.66 Aligned_cols=153 Identities=18% Similarity=0.289 Sum_probs=120.1
Q ss_pred cccceeeEEecCC-----cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-c
Q psy10472 10 TILKDFNLRIPAG-----QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-F 83 (181)
Q Consensus 10 ~vl~~isl~i~~G-----e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-~ 83 (181)
.+++++||++.+| |+++|+||||||||||+++|+|+++|++|+. +. ...++|+||+... |
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNVSMKPQKIAPKF 426 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCEEEECSSCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcEEEecccccccC
Confidence 4788999999998 7899999999999999999999999999962 11 1249999999754 4
Q ss_pred cccHHHHhhcCC--CCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472 84 ATSVRENIRYGD--SSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV 132 (181)
Q Consensus 84 ~~tv~enl~~~~--~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i 132 (181)
+.|+.+++.... .....+...++++.+++.+ ++.|+||++||+.++..+
T Consensus 427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 506 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506 (608)
T ss_dssp CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHH
T ss_pred CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH
Confidence 569999886421 1123344455555554432 456789999999999999
Q ss_pred HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeC--CeEEeecCCch
Q psy10472 133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMLGQHE 177 (181)
Q Consensus 133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i~~~~~~~~ 177 (181)
+++|+++. .|.|||+||||++++.. ||||++|++ |+++. .++++
T Consensus 507 ~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~-~g~p~ 555 (608)
T 3j16_B 507 SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH-ARAPE 555 (608)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE-CCCCE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe-cCChH
Confidence 99998863 48999999999999976 999999986 78876 45443
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=1e-29 Score=219.50 Aligned_cols=154 Identities=23% Similarity=0.247 Sum_probs=113.2
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE---------EECCEECCCCChh-hhccCcEEEEccC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI---------TISGVDLKHLDGT-WLRGNVIGLINQE 79 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i---------~i~g~~i~~~~~~-~~r~~~i~~v~q~ 79 (181)
.+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++...... ......+++++|.
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4899999 999999999999999999999999999999999995 3455433211001 1112248899997
Q ss_pred CCCcc----ccHHHHhhcCCCCCCHHHHHHHHHHhcc-----------------------------ccccccCCCCCCCH
Q psy10472 80 PVLFA----TSVRENIRYGDSSVSDEQIEEAAKLANA-----------------------------HGFISEFPSGALDN 126 (181)
Q Consensus 80 ~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~P~~~LD~ 126 (181)
..+++ .|+.+++..... .+++.++++.+++ .-++.|+||++||+
T Consensus 115 ~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~ 191 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKADE---TGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred hhhcchhhhccHHHHHhhhhH---HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 64432 378888743110 1122333333332 23567889999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCC
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG 167 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G 167 (181)
.+++.+.++|+++. +|+|||+||||++++.. ||+|++|++|
T Consensus 192 ~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 192 RQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999998864 58999999999999866 9999999864
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=6.6e-29 Score=219.36 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=97.6
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHH---------------------HHHhcCCCCCc-------ceEEECCEEC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIV---------------------ALLERFYDVSS-------GNITISGVDL 60 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl---------------------~~l~gl~~p~~-------G~i~i~g~~i 60 (181)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+. |.|.+++.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 99999999984 5555666543
Q ss_pred CCCChhhhccCcEEEEccCCC-------------------Ccc-ccHHHHhhcCCCC----CCH----H------HHHHH
Q psy10472 61 KHLDGTWLRGNVIGLINQEPV-------------------LFA-TSVRENIRYGDSS----VSD----E------QIEEA 106 (181)
Q Consensus 61 ~~~~~~~~r~~~i~~v~q~~~-------------------l~~-~tv~enl~~~~~~----~~~----~------~~~~~ 106 (181)
...+ +..+++++|.+. .+. .|+.||+.+.... ... . +...+
T Consensus 111 ~~~~-----~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 111 SRNP-----RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hccc-----hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 2211 122444444332 223 4899998764210 000 0 00011
Q ss_pred HHHhc------------------------------cc--cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch
Q psy10472 107 AKLAN------------------------------AH--GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLS 153 (181)
Q Consensus 107 ~~~~~------------------------------~~--~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~ 153 (181)
++.++ .. -++.|+||++||+.++..++++|++++ +|.|||+||||++
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 22221 12 356789999999999999999998864 5899999999999
Q ss_pred hhhcCCeEEEE------eCCeEEee
Q psy10472 154 TVQNADLIVVL------QAGQIVEM 172 (181)
Q Consensus 154 ~~~~~d~v~~l------~~G~i~~~ 172 (181)
.+..||++++| ++|++++.
T Consensus 266 ~~~~~d~ii~l~~g~~~~~G~i~~~ 290 (670)
T 3ux8_A 266 TMLAADYLIDIGPGAGIHGGEVVAA 290 (670)
T ss_dssp HHHHCSEEEEECSSSGGGCCSEEEE
T ss_pred HHhhCCEEEEecccccccCCEEEEe
Confidence 88779999999 89999873
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=2.8e-29 Score=219.21 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=115.4
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE---------EECCEECCCCChhh-hccCcEEEEccC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI---------TISGVDLKHLDGTW-LRGNVIGLINQE 79 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i---------~i~g~~i~~~~~~~-~r~~~i~~v~q~ 79 (181)
.+|+++| +|++||+++|+||||||||||||+|+|+++|++|++ .++|.++....... .....+++++|.
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4899999 999999999999999999999999999999999995 34554432110011 112248899997
Q ss_pred CCC----ccccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472 80 PVL----FATSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN 126 (181)
Q Consensus 80 ~~l----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~ 126 (181)
... +..|+.||+..... .++++++++.+++.. ++.|+||++||+
T Consensus 185 ~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~ 261 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCH
T ss_pred hhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 533 23489999864311 122344554444332 466889999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCC
Q psy10472 127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG 167 (181)
Q Consensus 127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G 167 (181)
.++..+.++|+++. +|.|||+||||++++.. ||+|++|+++
T Consensus 262 ~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 262 RQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999998864 58999999999999866 9999999864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.5e-28 Score=222.44 Aligned_cols=149 Identities=21% Similarity=0.333 Sum_probs=110.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-------
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV------- 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~------- 81 (181)
+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.. .++|++|++.
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~------------~I~yv~Q~~~~~l~~~~ 753 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC------------RIAYIKQHAFAHIESHL 753 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTC------------CEEEECHHHHHHGGGCT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCcc------------ceEeeccchhhhhhccc
Confidence 468999999999999999999999999999999999999999999998620 1333333210
Q ss_pred -------------------------------------------------------------------------------C
Q psy10472 82 -------------------------------------------------------------------------------L 82 (181)
Q Consensus 82 -------------------------------------------------------------------------------l 82 (181)
.
T Consensus 754 ~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~ 833 (986)
T 2iw3_A 754 DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSER 833 (986)
T ss_dssp TSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCE
T ss_pred ccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhccccc
Confidence 0
Q ss_pred cc-ccHHHHhhcC------------------------C-CCCCHHHHHHHHHHhcccc----------------------
Q psy10472 83 FA-TSVRENIRYG------------------------D-SSVSDEQIEEAAKLANAHG---------------------- 114 (181)
Q Consensus 83 ~~-~tv~enl~~~------------------------~-~~~~~~~~~~~~~~~~~~~---------------------- 114 (181)
+. .|+.+|+.++ . .....++++++++.+++..
T Consensus 834 ~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLA 913 (986)
T 2iw3_A 834 WVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLA 913 (986)
T ss_dssp EEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred ccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHH
Confidence 11 1333332111 0 1112344555666555421
Q ss_pred ---------ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472 115 ---------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 115 ---------~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~ 171 (181)
++.|+||++||+.+...+.+.|+++ +.|||+||||++++.. ||++++|++|+++.
T Consensus 914 rAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 914 AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp HHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 3557799999999999999998765 5799999999999865 99999999999876
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=2.4e-27 Score=214.69 Aligned_cols=149 Identities=19% Similarity=0.282 Sum_probs=117.3
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCcc-cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFA-TS 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~-~t 86 (181)
+.+|+++||+|++|++++|+||||||||||||+|+| |+| +|.+.. . .. .++|++|++ .+++ .|
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~--~~-~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----E--EC-RTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----T--TS-CEEETTCCCCCCCTTSB
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----c--ce-eEEEEcccccccccCCc
Confidence 568999999999999999999999999999999995 543 443321 1 11 278999985 4555 49
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQAAL 136 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~~l 136 (181)
+.+|+.+..... .+++.++++.+++. . ++.|+||++||+.+++.+.++|
T Consensus 513 v~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L 591 (986)
T 2iw3_A 513 VLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591 (986)
T ss_dssp HHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 999997621112 56677777777762 1 3567899999999999999999
Q ss_pred HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472 137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ 175 (181)
Q Consensus 137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~ 175 (181)
+. .|.|+|+||||++++.. ||++++|++|+++...++
T Consensus 592 ~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~ 629 (986)
T 2iw3_A 592 NT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGN 629 (986)
T ss_dssp HH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred Hh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCC
Confidence 87 58999999999999966 999999999999642343
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=8.5e-28 Score=212.27 Aligned_cols=63 Identities=33% Similarity=0.510 Sum_probs=55.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCch
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHE 177 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~ 177 (181)
-++.|+||++||+.++..++++++++. +|.|||+||||++.+..||||++| ++|++++. ++++
T Consensus 567 llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~-g~~~ 636 (670)
T 3ux8_A 567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV-GTPE 636 (670)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEE-ECHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEe-cCHH
Confidence 367899999999999999999998874 589999999999988779999999 89999984 5443
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=3.6e-27 Score=203.46 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=103.5
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-----------EECCEECCCCChhhh-ccCcEEEEccC----CCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-----------TISGVDLKHLDGTWL-RGNVIGLINQE----PVL 82 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-----------~i~g~~i~~~~~~~~-r~~~i~~v~q~----~~l 82 (181)
+++||+++|+||||||||||+|+|+|+++|++|+| .++|.++........ ....+...+|. +.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 45899999999999999999999999999999998 566655422111111 11124444444 334
Q ss_pred ccccHHHHhhcCCCCCCHHHHHHHHHHhc-----------------------------cccccccCCCCCCCHHHHHHHH
Q psy10472 83 FATSVRENIRYGDSSVSDEQIEEAAKLAN-----------------------------AHGFISEFPSGALDNESEKLVQ 133 (181)
Q Consensus 83 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~P~~~LD~~~~~~i~ 133 (181)
+..++.+++..... .++++++++.++ ..-++.|+||++||+.++..+.
T Consensus 102 ~~~~v~~~l~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 102 LKGTVNEILTKIDE---RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp CCSBHHHHHHHHCC---SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred ccCcHHHHhhcchh---HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 44577776642211 111222333222 2235678899999999999999
Q ss_pred HHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472 134 AALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 168 (181)
Q Consensus 134 ~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~ 168 (181)
++|+++.+|+|||+||||++++.. ||+|++|++|.
T Consensus 179 ~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 179 KAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999988679999999999999876 99999998753
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-26 Score=202.21 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=105.7
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhhccC-cEEEEcc
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWLRGN-VIGLINQ 78 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~r~~-~i~~v~q 78 (181)
.|++++ ++++||+++|+||||||||||||+|+|+++|++|+|. +.|.++........... ...+.+|
T Consensus 93 ~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (608)
T 3j16_B 93 KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ 171 (608)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence 455555 5889999999999999999999999999999999982 33322111100111111 1223344
Q ss_pred CCCCcc-------ccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCC
Q psy10472 79 EPVLFA-------TSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSG 122 (181)
Q Consensus 79 ~~~l~~-------~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~ 122 (181)
....++ .++.+++.... ....++++++++.+++.. ++.|+||+
T Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts 250 (608)
T 3j16_B 172 YVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250 (608)
T ss_dssp CTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTT
T ss_pred hhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 322111 14555544321 123345555665555432 45678999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472 123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 168 (181)
Q Consensus 123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~ 168 (181)
+||+.++..+.++++++. +|+|||+||||++++.. ||+|++|++|.
T Consensus 251 ~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999875 48999999999999976 99999998764
No 60
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.93 E-value=1.4e-25 Score=187.35 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=119.1
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------CCcc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--------------------------------------VSSG 51 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--------------------------------------p~~G 51 (181)
.++++++|++++| +++|+|||||||||||++|.++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 999999999999999999977764 4578
Q ss_pred eEEECCEECCCCChhhhccCcEEEEccCCCCccccH------HHHhh---------------------------------
Q psy10472 52 NITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV------RENIR--------------------------------- 92 (181)
Q Consensus 52 ~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv------~enl~--------------------------------- 92 (181)
++++||+++.......+....+++++|+..++..+. .+++.
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 999999998654444555555899999975542111 11111
Q ss_pred ----------------------------------------------cCC---------------------------CC--
Q psy10472 93 ----------------------------------------------YGD---------------------------SS-- 97 (181)
Q Consensus 93 ----------------------------------------------~~~---------------------------~~-- 97 (181)
+.. ..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000 00
Q ss_pred --------CC---HHHHHHHHHHh-cc--ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEE
Q psy10472 98 --------VS---DEQIEEAAKLA-NA--HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV 163 (181)
Q Consensus 98 --------~~---~~~~~~~~~~~-~~--~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~ 163 (181)
.+ .+++.-+...+ .. .-++.|+|+++||+..+..+.+.|+.+.+|.|||+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 12 12222222222 23 446789999999999999999999988778999999999988877999999
Q ss_pred E----eCCeEEe
Q psy10472 164 L----QAGQIVE 171 (181)
Q Consensus 164 l----~~G~i~~ 171 (181)
| ++|+++.
T Consensus 368 l~k~~~~G~~~~ 379 (415)
T 4aby_A 368 VEKQVEDGRTVS 379 (415)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEeccCCceEE
Confidence 9 9999865
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=1.2e-24 Score=196.55 Aligned_cols=64 Identities=33% Similarity=0.495 Sum_probs=56.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCchh
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHEN 178 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~~ 178 (181)
-++.|+||++||+..++.++++|+++. +|.|||+||||++.+..||+|++| ++|++++ .+++++
T Consensus 829 LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~-~Gtpee 899 (916)
T 3pih_A 829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVA-TGTPEE 899 (916)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE-EESHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEE-EcCHHH
Confidence 356789999999999999999998864 599999999999998789999999 8999998 455544
No 62
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=5.6e-27 Score=179.26 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=91.0
Q ss_pred ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~ 84 (181)
..+..++++| .+|++||+++|+||||||||||+|+|+|+++. +.+++......+....+ +.++|+||++.+|+
T Consensus 5 ~~~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~-~~i~~~~q~~~~~~ 77 (207)
T 1znw_A 5 GPDTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEV-DGVDYHFIDPTRFQ 77 (207)
T ss_dssp ----------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCC-BTTTBEECCHHHHH
T ss_pred CCCCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCccccc-CCCeeEecCHHHHH
Confidence 3445678888 79999999999999999999999999999863 44544222111111123 34899999988776
Q ss_pred c-cHHHHhhcC----C--C--CCCHHHH----HHH------HHHhcccc-----------c-------cccCCCCCC---
Q psy10472 85 T-SVRENIRYG----D--S--SVSDEQI----EEA------AKLANAHG-----------F-------ISEFPSGAL--- 124 (181)
Q Consensus 85 ~-tv~enl~~~----~--~--~~~~~~~----~~~------~~~~~~~~-----------~-------~~~~P~~~L--- 124 (181)
. |+.+|+.+. . . ....... .+. ++.+++.. + +.++|++++
T Consensus 78 ~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~ 157 (207)
T 1znw_A 78 QLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTE 157 (207)
T ss_dssp HHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCS
T ss_pred HHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCC
Confidence 4 777776421 0 0 0112222 111 12222211 1 123366676
Q ss_pred -CHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEe
Q psy10472 125 -DNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ 165 (181)
Q Consensus 125 -D~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~ 165 (181)
|+..++.+.++++++. .|.|+|+||||++++.. ||+|++|.
T Consensus 158 ~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 158 TADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 6778889999988764 38999999999999966 99999984
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=2.1e-24 Score=193.59 Aligned_cols=58 Identities=21% Similarity=0.438 Sum_probs=52.2
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM 172 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~ 172 (181)
++.|+||++||+..++.++++|+++. +|.|||+||||++++..||+|++| ++|+++..
T Consensus 755 LILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~ 819 (842)
T 2vf7_A 755 YVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQ 819 (842)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEE
Confidence 56788999999999999999998864 699999999999999669999999 69999873
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=1.5e-24 Score=195.45 Aligned_cols=62 Identities=32% Similarity=0.499 Sum_probs=53.9
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCc
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQH 176 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~ 176 (181)
-++.|+||++||+..++.++++|+++. +|.|||+||||++++..||+|++| ++|+++.. +++
T Consensus 869 lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~-g~~ 937 (972)
T 2r6f_A 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV-GTP 937 (972)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEE-ESH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEe-cCH
Confidence 356788999999999999999998864 589999999999998779999999 68999873 443
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-25 Score=190.72 Aligned_cols=146 Identities=15% Similarity=0.159 Sum_probs=109.1
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-e-EEECCEECCCCChhhhccCcEEEEccCCCCcc----
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-N-ITISGVDLKHLDGTWLRGNVIGLINQEPVLFA---- 84 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~---- 84 (181)
.+.++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .++ .++|+||++.+|+
T Consensus 127 ~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~-~i~~vpq~~~l~~~~~~ 196 (460)
T 2npi_A 127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ-PIFTVPGCISATPISDI 196 (460)
T ss_dssp HHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS-CSSSCSSCCEEEECCSC
T ss_pred hhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC-Ceeeeccchhhcccccc
Confidence 34578999999999999999999999999999999999999 9 999981 133 4899999985442
Q ss_pred ccHHHHhhcCCCC-------C------------C-----------HHHHHHHHH--Hh-----ccccccccC-CCCCCCH
Q psy10472 85 TSVRENIRYGDSS-------V------------S-----------DEQIEEAAK--LA-----NAHGFISEF-PSGALDN 126 (181)
Q Consensus 85 ~tv~enl~~~~~~-------~------------~-----------~~~~~~~~~--~~-----~~~~~~~~~-P~~~LD~ 126 (181)
.|+++|+ |+... . . .+++.-+.. ++ ...+++.|+ |+++||+
T Consensus 197 ~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~ 275 (460)
T 2npi_A 197 LDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDE 275 (460)
T ss_dssp CCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCS
T ss_pred cchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccCh
Confidence 3888888 53210 0 0 111111111 11 112377888 9999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecCch------hhhc-CCe-----EEEEe-CCeEE
Q psy10472 127 ESEKLVQAALESACKGRTVLMIAHRLS------TVQN-ADL-----IVVLQ-AGQIV 170 (181)
Q Consensus 127 ~~~~~i~~~l~~~~~~~tii~vtHd~~------~~~~-~d~-----v~~l~-~G~i~ 170 (181)
. .+.+.++++++ +.|+|+|||+.+ ++.. ||+ |++|+ +|+++
T Consensus 276 ~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 276 N-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp S-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred h-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 9 66677766654 688999999988 6644 999 99999 99987
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=8.3e-24 Score=191.23 Aligned_cols=59 Identities=25% Similarity=0.461 Sum_probs=52.6
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM 172 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~ 172 (181)
-++.|+||++||+..++.++++|+++. +|.|||+||||++++..||+|++| ++|+++..
T Consensus 887 lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 887 VYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEe
Confidence 456788999999999999999998864 699999999999998779999999 68999873
No 67
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.89 E-value=2e-25 Score=188.38 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=117.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE---ECCCCC-----hhhhccCcEEEEccC-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV---DLKHLD-----GTWLRGNVIGLINQE- 79 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~---~i~~~~-----~~~~r~~~i~~v~q~- 79 (181)
..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++..+. ...++ +.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~-r~i~~v~q~~ 222 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRA-RSVVIAAPAD 222 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHH-TEEEEEECTT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccC-ceEEEEECCC
Confidence 4589999 999999999999999999999999999999999999999997 443211 12233 459999995
Q ss_pred CCCcc-ccHHHHhhcCC-----CCC-------CHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhcC----
Q psy10472 80 PVLFA-TSVRENIRYGD-----SSV-------SDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESACK---- 141 (181)
Q Consensus 80 ~~l~~-~tv~enl~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~~---- 141 (181)
..+++ .++.+|+.+.. ... .-.+.....+.+.+. +.+.| +++||+.....+.+++.++.+
T Consensus 223 ~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~ 300 (438)
T 2dpy_A 223 VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHG 300 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCC
Confidence 44554 49999886531 000 111222222222222 33444 899999999999999987643
Q ss_pred -Cc-----EEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 142 -GR-----TVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 142 -~~-----tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
|. ||+++|||++ ...||++++|.+|+++.
T Consensus 301 ~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 301 GGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp SCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred CCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 64 9999999999 55599999999999987
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=2.1e-24 Score=165.60 Aligned_cols=139 Identities=13% Similarity=0.144 Sum_probs=85.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CC--cc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VL--FA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l--~~ 84 (181)
+.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +....++ .+||+||++ .+ +.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~-~ig~v~q~~~enl~~~~ 83 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGE-KLGFLPGTLNEKIDPYL 83 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTC-CCCSSCC------CTTT
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-Cchhhhc-ceEEecCCHHHHHHHHH
Confidence 4688885 89999999999999999999999999 999999943 23221 1122343 499999986 22 11
Q ss_pred ccHHHHhhcCCCCCCHHHHHHHHHHhcc----------------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q psy10472 85 TSVRENIRYGDSSVSDEQIEEAAKLANA----------------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMI 148 (181)
Q Consensus 85 ~tv~enl~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~v 148 (181)
.++.+++.. ....+.+.++++. ++ .-++.|+||++ ++..++++|+++.+|+||| +
T Consensus 84 ~~~~~~~~~---~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-v 154 (208)
T 3b85_A 84 RPLHDALRD---MVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-V 154 (208)
T ss_dssp HHHHHHHTT---TSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-E
T ss_pred HHHHHHHHH---hccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-E
Confidence 122233211 1122344555554 32 12467889999 8888999998775589999 9
Q ss_pred ecCchhhhcCCeEEEEeCCe
Q psy10472 149 AHRLSTVQNADLIVVLQAGQ 168 (181)
Q Consensus 149 tHd~~~~~~~d~v~~l~~G~ 168 (181)
|||++.+.. ....++|.
T Consensus 155 tHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 155 TGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp EEC---------------CC
T ss_pred ECCHHHHhC---cCCCCCcH
Confidence 999987653 33456664
No 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=8e-24 Score=182.25 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=108.4
Q ss_pred cccccceeeE-EecCCcEEEEECCCCCcHHHHHHH--HhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC--
Q psy10472 8 LKTILKDFNL-RIPAGQKVAIVGSSGNGKSTIVAL--LERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-- 82 (181)
Q Consensus 8 ~~~vl~~isl-~i~~Ge~~~liG~nGsGKSTLl~~--l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-- 82 (181)
..++|++++| .|++|++++|+||||||||||+++ ++|+.+|++|.|+++|++.. ......++ .+||+||++..
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~-~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNAR-SFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHG-GGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHH-HcCCChHHhhccC
Confidence 3568999999 999999999999999999999999 78999999999999997621 11122233 48999998642
Q ss_pred --ccccHHHHhhcCCCCCC----HHHHH---HHHHHhccccccccCCCC-----CCCHHHHHHHHHHHHHhc-CCcEEEE
Q psy10472 83 --FATSVRENIRYGDSSVS----DEQIE---EAAKLANAHGFISEFPSG-----ALDNESEKLVQAALESAC-KGRTVLM 147 (181)
Q Consensus 83 --~~~tv~enl~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~P~~-----~LD~~~~~~i~~~l~~~~-~~~tii~ 147 (181)
+..++.+. ........ .+... ..+..-+..-++.++|++ +||+..++.++++++.++ .|+|+|+
T Consensus 102 ~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~ 180 (525)
T 1tf7_A 102 KLFILDASPD-PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM 180 (525)
T ss_dssp SEEEEECCCC-SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEecCcc-cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 21111110 00000001 11111 122222333455666765 579999999999998875 4999999
Q ss_pred EecCchhh---------hc-CCeEEEEeC
Q psy10472 148 IAHRLSTV---------QN-ADLIVVLQA 166 (181)
Q Consensus 148 vtHd~~~~---------~~-~d~v~~l~~ 166 (181)
+||+++.+ .. ||+|++|++
T Consensus 181 itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 181 TTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EecCCCCccccccccceeeeeeEEEEEEE
Confidence 99999874 45 999999998
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=3.8e-24 Score=159.11 Aligned_cols=130 Identities=20% Similarity=0.287 Sum_probs=81.2
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--CccccHHHHh
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATSVRENI 91 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~tv~enl 91 (181)
+|||++++||+++|+||||||||||++++.+ |...++ ...+ .++++|++. .+..++++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~----~g~~~~~~~~~~~~~~~~~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFC----RGLMSDDENDQTVTGAAFDVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHH----HHHHCSSTTCGGGHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHH----HHHhcCcccchhhHHHHHHHH
Confidence 6899999999999999999999999997542 111111 1111 145666552 2223333332
Q ss_pred hc--------CC------CCCC---HHHHHHHHHHh--ccccccccCCCCCCCHH----------------HHHHHHHHH
Q psy10472 92 RY--------GD------SSVS---DEQIEEAAKLA--NAHGFISEFPSGALDNE----------------SEKLVQAAL 136 (181)
Q Consensus 92 ~~--------~~------~~~~---~~~~~~~~~~~--~~~~~~~~~P~~~LD~~----------------~~~~i~~~l 136 (181)
.. +. .... ..+...+++.+ ...-++.|+|+++||+. ....+.+.+
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 63 HYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 11 10 0111 11112223332 23346789999999999 557788887
Q ss_pred HHhc-CCcEEEEEecCchhhhcCCeE
Q psy10472 137 ESAC-KGRTVLMIAHRLSTVQNADLI 161 (181)
Q Consensus 137 ~~~~-~~~tii~vtHd~~~~~~~d~v 161 (181)
+.+. +|.|+|+||||++++..++++
T Consensus 143 ~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 143 KGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp TTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 6653 499999999999998766554
No 71
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=2.8e-22 Score=161.80 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=104.7
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhc-cCcEEEEccCCC-Cccc-
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLR-GNVIGLINQEPV-LFAT- 85 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r-~~~i~~v~q~~~-l~~~- 85 (181)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++ +..++|++|++. +++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 57899999999999999999999999999999999999999999988754321 1221 224999999998 7765
Q ss_pred cHHHHhhcCC--------------CCCCHHHHHHHH------HH--h-ccc--cccccCCCCCCCHHHHHHHHHHHHHhc
Q psy10472 86 SVRENIRYGD--------------SSVSDEQIEEAA------KL--A-NAH--GFISEFPSGALDNESEKLVQAALESAC 140 (181)
Q Consensus 86 tv~enl~~~~--------------~~~~~~~~~~~~------~~--~-~~~--~~~~~~P~~~LD~~~~~~i~~~l~~~~ 140 (181)
|+++|+.++. .......+.+.- .. . ... -++.| |+++||+..+. ..+.+ .
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~ 245 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-V 245 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-H
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-h
Confidence 9999987531 011122222111 10 0 122 34567 99999998542 11211 2
Q ss_pred CCcEEEEEecC---------chhhhc-CCeEEEEeCCeEE
Q psy10472 141 KGRTVLMIAHR---------LSTVQN-ADLIVVLQAGQIV 170 (181)
Q Consensus 141 ~~~tii~vtHd---------~~~~~~-~d~v~~l~~G~i~ 170 (181)
.|.|+|++||. ++.+.. .+.|.++..|+.+
T Consensus 246 ~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 246 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 38999999993 334434 7899999999654
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=1e-23 Score=170.05 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=94.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
.++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|..|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------------------~~~v~q~~~lf~~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------------------LSFANHKSHFWLASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------------------ECGGGTTSGGGGGGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------------------EEEecCccccccccHH
Confidence 35899999999999999999999999999999999998 7887 3456788888888888
Q ss_pred H-HhhcCCCCCCHHHHHHHHHH-h--c-------------cccccccCC---CCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q psy10472 89 E-NIRYGDSSVSDEQIEEAAKL-A--N-------------AHGFISEFP---SGALDNESEKLVQAALESACKGRTVLMI 148 (181)
Q Consensus 89 e-nl~~~~~~~~~~~~~~~~~~-~--~-------------~~~~~~~~P---~~~LD~~~~~~i~~~l~~~~~~~tii~v 148 (181)
+ |+.++.. ... .+.+.++. + + ...++.++| |++||+.++..+.. +
T Consensus 171 ~~ni~~~~~-~~~-~~~~~i~~~L~~gldg~~LSgGqkQRARAll~~p~iLlTs~LD~~~~~~i~~-------------l 235 (305)
T 2v9p_A 171 DTRAALVDD-ATH-ACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLY-------------L 235 (305)
T ss_dssp TCSCEEEEE-ECH-HHHHHHHHTTTGGGGTCCEECCCSSCCCCEECCCCEEEEESSCSTTCGGGGG-------------G
T ss_pred HHhhccCcc-ccH-HHHHHHHHHhHccCCccCcCHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHH-------------H
Confidence 7 8887521 122 23333333 1 1 111222223 89999998887752 2
Q ss_pred ecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 149 tHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
||+++.+..||+| +|++|++++ .++++
T Consensus 236 tH~~~~~~~aD~i-vl~~G~iv~-~g~~~ 262 (305)
T 2v9p_A 236 HSRVQTFRFEQPC-TDESGEQPF-NITDA 262 (305)
T ss_dssp TTTEEEEECCCCC-CCC---CCC-CCCHH
T ss_pred hCCHHHHHhCCEE-EEeCCEEEE-eCCHH
Confidence 9999988789999 999999987 45544
No 73
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.84 E-value=6.8e-23 Score=157.51 Aligned_cols=143 Identities=18% Similarity=0.163 Sum_probs=96.1
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCC-------CcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHH
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDV-------SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVREN 90 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-------~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~en 90 (181)
-|++|++++|+||||||||||+++|+|+..| ..|.+++++.+. ... +.+++++|...+++.++.+|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~~-----~~i~~~~~~~~~~~~~~~~~ 93 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FRP-----ERIREIAQNRGLDPDEVLKH 93 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCH-----HHHHHHHHHTTSCHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CCH-----HHHHHHHHHcCCCHHHHhhc
Confidence 5899999999999999999999999996655 445778877542 111 13678888888887799999
Q ss_pred hhcCCCCCCHH---HHHHHHHHh--------ccccccccCCCCCCCHH-------H-----HHHHHHHHHHh-c-CCcEE
Q psy10472 91 IRYGDSSVSDE---QIEEAAKLA--------NAHGFISEFPSGALDNE-------S-----EKLVQAALESA-C-KGRTV 145 (181)
Q Consensus 91 l~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~P~~~LD~~-------~-----~~~i~~~l~~~-~-~~~ti 145 (181)
+.+........ ....+.+.+ +..-++.|+|++.+|+. . ...++..+..+ + .|+||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tv 173 (231)
T 4a74_A 94 IYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 173 (231)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 98764322111 122222222 23345578899988873 1 12556666554 3 38999
Q ss_pred EEEecCch----hhhc-CCeEEEEeCC
Q psy10472 146 LMIAHRLS----TVQN-ADLIVVLQAG 167 (181)
Q Consensus 146 i~vtHd~~----~~~~-~d~v~~l~~G 167 (181)
|++||..+ .+.. ||+++.|++|
T Consensus 174 i~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 174 FVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp EEEEECC---------CCSEEEEEEEC
T ss_pred EEEeecccCcchhhHhhceEEEEEEec
Confidence 99999554 4765 9999999875
No 74
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.84 E-value=2.5e-23 Score=161.80 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=92.1
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHh--cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhcC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLE--RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYG 94 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~--gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~~ 94 (181)
.|++|++++|+||||||||||+++|+ |+.++..|.+++++..... ......+ .+++.+|+...+.. ++.++....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA-SFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH-TTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH-HcCCChHHHhhcCCEEEEEccccc
Confidence 68999999999999999999999999 7756777888887743211 1111222 36788876432221 232222211
Q ss_pred C-----------CCCCH-HHH---HHHHHHhccccccccCCCCCCC-----HHHHHHHHHHHHHhc-CCcEEEEEecCch
Q psy10472 95 D-----------SSVSD-EQI---EEAAKLANAHGFISEFPSGALD-----NESEKLVQAALESAC-KGRTVLMIAHRLS 153 (181)
Q Consensus 95 ~-----------~~~~~-~~~---~~~~~~~~~~~~~~~~P~~~LD-----~~~~~~i~~~l~~~~-~~~tii~vtHd~~ 153 (181)
. ..... +.. ...+...+..-++.|+|+++|| +..++.+.++++.++ .|+|||++||+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 104 VGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred cccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 0 01111 112 2223334555577889999987 566667888887765 4999999999998
Q ss_pred hh---------h-cC-CeEEEEe
Q psy10472 154 TV---------Q-NA-DLIVVLQ 165 (181)
Q Consensus 154 ~~---------~-~~-d~v~~l~ 165 (181)
.+ . .| |++++|+
T Consensus 184 ~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 184 PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp ---CCSSSSSCGGGGCSEEEEEE
T ss_pred CCcccccccChhhEeeeEEEEEe
Confidence 86 3 47 9999995
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=3e-23 Score=173.63 Aligned_cols=149 Identities=18% Similarity=0.260 Sum_probs=103.1
Q ss_pred ccccceeeEEecCCc--------------------EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh
Q psy10472 9 KTILKDFNLRIPAGQ--------------------KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge--------------------~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~ 68 (181)
+.+|++|||+|++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999987542
Q ss_pred ccCcEEEEccCCCCccccHHHHhhcCCCCC-------------------------CHHHHH--HHHHHh---------cc
Q psy10472 69 RGNVIGLINQEPVLFATSVRENIRYGDSSV-------------------------SDEQIE--EAAKLA---------NA 112 (181)
Q Consensus 69 r~~~i~~v~q~~~l~~~tv~enl~~~~~~~-------------------------~~~~~~--~~~~~~---------~~ 112 (181)
+ .++++|++.....|+.||+.++.... .++++. .++... ..
T Consensus 109 ~---~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 109 M---ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp C---CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred e---eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 1 26788886432347777665532110 222221 111111 11
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhc------C----CcEEEEEecCchh--hhc-CCeEE-EEeCC
Q psy10472 113 HGFISEFPSGALDNESEKLVQAALESAC------K----GRTVLMIAHRLST--VQN-ADLIV-VLQAG 167 (181)
Q Consensus 113 ~~~~~~~P~~~LD~~~~~~i~~~l~~~~------~----~~tii~vtHd~~~--~~~-~d~v~-~l~~G 167 (181)
+-++.|+|+++||+..++.+++.++++. . ..+++++||+++. +.. ||++. .|..|
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 2245678999999999999988887652 1 3678899999886 654 77664 33444
No 76
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=3.7e-20 Score=150.35 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=48.5
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeE--EEEeCCeE
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI--VVLQAGQI 169 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v--~~l~~G~i 169 (181)
-++.|+|+++||+..++.+.++++.+.++.++|++||+++.+..||++ ++|.+|.-
T Consensus 244 ~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 244 FYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 356788999999999999999998876689999999998766779987 88888864
No 77
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.82 E-value=5.2e-22 Score=162.96 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=110.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC-------CChhhhccCcEEEEccCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH-------LDGTWLRGNVIGLINQEPV 81 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~-------~~~~~~r~~~i~~v~q~~~ 81 (181)
..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++... .....+ .+.+.+++|...
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~-~~~v~~~~~~~~ 136 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTL-SKCVLVVTTSDR 136 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHH-TTEEEEEECTTS
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhh-hceEEEEECCCC
Confidence 3589999 9999999999999999999999999999999999999998865211 111112 234788887643
Q ss_pred Cc-c-ccHHHHhh-c----CCCC-------CCHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhc--C-Cc
Q psy10472 82 LF-A-TSVRENIR-Y----GDSS-------VSDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESAC--K-GR 143 (181)
Q Consensus 82 l~-~-~tv~enl~-~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~--~-~~ 143 (181)
.. . .++..+.. + .... ..-.+...+.+.+.+. +.++| +++||+.....+.+++++.. + |.
T Consensus 137 ~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la--l~~p~~t~Gldp~~~~~l~~ller~~~~~~Gs 214 (347)
T 2obl_A 137 PALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA--SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGS 214 (347)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH--TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSE
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH--cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 21 1 12222211 0 0000 1122222333333333 45666 69999999999999998864 3 77
Q ss_pred -----EEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 144 -----TVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 144 -----tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
||+++|||++ ...||++++|.+|+++.
T Consensus 215 iT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 215 ITAIYTVLLESDNVN-DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp EEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEB
T ss_pred eeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEE
Confidence 9999999998 34499999999999986
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=4.2e-21 Score=158.03 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=106.6
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhh-ccCcEEEEccCCC-Cccc-
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWL-RGNVIGLINQEPV-LFAT- 85 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~-r~~~i~~v~q~~~-l~~~- 85 (181)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+ ++..++|++|++. +++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999999999999999988754321 122 1224999999988 7765
Q ss_pred cHHHHhhcCC--------------CCCCHHHHHHH------HH-Hh--ccc--cccccCCCCCCCHHHHHHHHHHHHHhc
Q psy10472 86 SVRENIRYGD--------------SSVSDEQIEEA------AK-LA--NAH--GFISEFPSGALDNESEKLVQAALESAC 140 (181)
Q Consensus 86 tv~enl~~~~--------------~~~~~~~~~~~------~~-~~--~~~--~~~~~~P~~~LD~~~~~~i~~~l~~~~ 140 (181)
++++|+.++. .......+.+. +. .+ ... -++.| |+++||+..+.. .+.+ .
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~---~~~~-~ 302 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR---EFNE-V 302 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH---HHHH-H
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH---HHHH-h
Confidence 9999987531 11122222111 11 11 122 34567 999999986521 1111 2
Q ss_pred CCcEEEEEecC---------chhhhc-CCeEEEEeCCeEEe
Q psy10472 141 KGRTVLMIAHR---------LSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 141 ~~~tii~vtHd---------~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+.|+|++||. ++.+.. +..|.++..|+.++
T Consensus 303 ~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~ 343 (359)
T 2og2_A 303 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE 343 (359)
T ss_dssp TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChH
Confidence 38999999993 334434 78999999996543
No 79
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.81 E-value=2.3e-19 Score=148.16 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=51.5
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~ 171 (181)
-++.|+||++||+.++..+++.++.+. +|.|||+||||++.+..||++++|++|++++
T Consensus 306 ~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 306 AFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 356788999999999999999998875 5899999999999876799999999999875
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.80 E-value=2.2e-21 Score=158.35 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=94.6
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVREN 90 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~en 90 (181)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+....+ ..+ +.++++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~-~~i~~~~g------------ 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHK-NYTQLFFG------------ 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCS-SEEEEECB------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cch-hEEEEEeC------------
Confidence 688999999999999999999999999999999999999999999996532221 123 34788764
Q ss_pred hhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472 91 IRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKG-RTVLMIAHRLSTVQNADLIVVLQAGQ 168 (181)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~-~tii~vtHd~~~~~~~d~v~~l~~G~ 168 (181)
+ .......+..++ .....-++.++|++ .++.++++.+..| .|+|++||+.+....|||+++|.+|.
T Consensus 225 ---g-g~~~r~~la~aL-~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 ---G-NITSADCLKSCL-RMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp ---T-TBCHHHHHHHHT-TSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred ---C-ChhHHHHHHHHh-hhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 1 001111222222 12344466788987 1345666665554 58999999999656699999998875
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=3e-22 Score=154.38 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=85.8
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-hhccCcEEEEccCCCCccc-c-
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-WLRGNVIGLINQEPVLFAT-S- 86 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~~i~~v~q~~~l~~~-t- 86 (181)
..|++|||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+.. ..+. .++|+||++.+|+. +
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKE-GVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCB-TTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCccccc-CCeEEECCHHHHHHhhh
Confidence 4799999999999999999999999999999999999 6 99999 8766443221 1233 48999999877753 3
Q ss_pred HHHHhhc---CCC--CCCHHHHHHHHHHhc-----------------c------cccc-------ccCCCCCCCHHHHHH
Q psy10472 87 VRENIRY---GDS--SVSDEQIEEAAKLAN-----------------A------HGFI-------SEFPSGALDNESEKL 131 (181)
Q Consensus 87 v~enl~~---~~~--~~~~~~~~~~~~~~~-----------------~------~~~~-------~~~P~~~LD~~~~~~ 131 (181)
..+++.+ ... ......++++++... + ..++ .++|++++|..+...
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~ 165 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQ 165 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHH
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence 2223321 110 012333444443211 1 0111 123667888887777
Q ss_pred HHHHHHHhc--------CCcEEEEEecCchhhhc-CCeEE
Q psy10472 132 VQAALESAC--------KGRTVLMIAHRLSTVQN-ADLIV 162 (181)
Q Consensus 132 i~~~l~~~~--------~~~tii~vtHd~~~~~~-~d~v~ 162 (181)
+.+.+.... .....|+++||++++.. +++++
T Consensus 166 i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 166 IQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 777765432 35677888888877643 55544
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=2.1e-20 Score=147.91 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=92.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv 87 (181)
.++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... + ..+++++|...-.. .
T Consensus 14 ~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~-~~~~~v~q~~~gl~-~- 84 (261)
T 2eyu_A 14 PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----K-HKKSIVNQREVGED-T- 84 (261)
T ss_dssp CTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----C-CSSSEEEEEEBTTT-B-
T ss_pred HHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----C-CcceeeeHHHhCCC-H-
Confidence 36899999 9999999999999999999999999999998 999999987654321 1 12455665310000 0
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 88 RENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
... ...+..++.. +..-++.++|+ |+++...+. +....|.+|+++||+.+....|||++.|.
T Consensus 85 --------~~l-~~~la~aL~~-~p~illlDEp~---D~~~~~~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 85 --------KSF-ADALRAALRE-DPDVIFVGEMR---DLETVETAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp --------SCH-HHHHHHHHHH-CCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred --------HHH-HHHHHHHHhh-CCCEEEeCCCC---CHHHHHHHH---HHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 000 2233444443 55557789999 888765443 33345899999999988655588876664
No 83
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.78 E-value=1.1e-20 Score=145.85 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=90.9
Q ss_pred eeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH----
Q psy10472 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV---- 87 (181)
Q Consensus 15 isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv---- 87 (181)
-.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..+ ..++|+||++.+|+. ++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~-~gi~y~fq~~~~f~~~~~~~~f 83 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEV-HGEHYFFVNHDEFKEMISRDAF 83 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCC-BTTTBEECCHHHHHHHHHTTCE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccc-cCceEEECCHHHHHHHHhcCHH
Confidence 3456789999999999999999999999999986 68999888754321 122 248999999988875 77
Q ss_pred HHHhhcCCCC--CCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc
Q psy10472 88 RENIRYGDSS--VSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN 157 (181)
Q Consensus 88 ~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~ 157 (181)
.||+.+.... ...+.++++++. + ..++.+ ||+.++..+.+.+. ++.||+++||+++.+..
T Consensus 84 ~E~~~~~~~~yg~~~~~v~~~l~~-G-~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 84 LEHAEVFGNYYGTSREAIEQVLAT-G-VDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR 145 (219)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHTT-T-CEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHhc-C-CeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH
Confidence 6777664221 234445555543 2 223334 99999999998775 58999999999988754
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.77 E-value=1.1e-19 Score=144.46 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=69.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhcCCCCC---C
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYGDSSV---S 99 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~ 99 (181)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... . +.+.++|++|++.+++. ||.||+.|+.... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~-~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---V-EIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---C-SCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---e-eeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 4899999999999999999999999999999999877432 2 22459999999988865 9999999875321 1
Q ss_pred HHHHHHHHH---------Hh-------------ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472 100 DEQIEEAAK---------LA-------------NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV 155 (181)
Q Consensus 100 ~~~~~~~~~---------~~-------------~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~ 155 (181)
.+.+.+.+. .+ ...-++.++|+.+||+...+ +++.+.+..++|+|.|..+.+
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~----~l~~L~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE----FMKHLSKVVNIIPVIAKADTM 153 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH----HHHHHHTTSEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH----HHHHHHhcCcEEEEEeccccC
Confidence 122222211 00 01113467799999998732 333333237888888876643
No 85
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.76 E-value=1.1e-19 Score=158.80 Aligned_cols=151 Identities=19% Similarity=0.257 Sum_probs=95.6
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCC--CC-hhhhccCcEEEEccCCCCccc-cHHHHh
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKH--LD-GTWLRGNVIGLINQEPVLFAT-SVRENI 91 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~--~~-~~~~r~~~i~~v~q~~~l~~~-tv~enl 91 (181)
++++. ++|+|||||||||||++|+|+..| ++|.|.++|.++.. .+ ...+++ .++|+||++.+++. ||.+|+
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~-~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRG-KVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEE-EESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCcccccee-EEeeecccccCCCHHHHHHHH
Confidence 55554 999999999999999999999988 79999999998521 11 123444 49999999988875 999999
Q ss_pred hcCC-------CCCCHHHHHHHHHHh-ccccccccCC------CCCCCHHHHHHHHHHHHHh-cC--CcEEEEEecCchh
Q psy10472 92 RYGD-------SSVSDEQIEEAAKLA-NAHGFISEFP------SGALDNESEKLVQAALESA-CK--GRTVLMIAHRLST 154 (181)
Q Consensus 92 ~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~P------~~~LD~~~~~~i~~~l~~~-~~--~~tii~vtHd~~~ 154 (181)
.++. .....+.+....... ...-.+.|+| +++||+..+..+.++++.+ .+ +.+++++||+++.
T Consensus 119 ~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 119 NKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp HHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred HHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 7631 000000000000000 0112456778 9999999999999999885 33 6789999999764
Q ss_pred hh--------c-----CCeEEEEeCCeEEe
Q psy10472 155 VQ--------N-----ADLIVVLQAGQIVE 171 (181)
Q Consensus 155 ~~--------~-----~d~v~~l~~G~i~~ 171 (181)
+. . ...|+++.++.++.
T Consensus 199 a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 199 ATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp TTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred ccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 31 1 35688888876654
No 86
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.75 E-value=2.2e-19 Score=134.40 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=81.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh----cCC----
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR----YGD---- 95 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~----~~~---- 95 (181)
+++|+||||||||||+++|+|++. |.++|.+.........++ .+||++|++. +.+|+. +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~-~ig~~~~~~~-----~~~~~~~~~~~~~~~~~ 70 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKK-RTGFRIITTE-----GKKKIFSSKFFTSKKLV 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-------CCEEEEEETT-----CCEEEEEETTCCCSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccc-eeEEEeecCc-----HHHHHHHhhcCCccccc
Confidence 689999999999999999999985 556665432221112233 4899999862 122221 100
Q ss_pred CC----CC--HHHHHHHHH-------HhccccccccC--CCCCCCHHHHHHHHHHHHHhcCCcEEEEEec---Cchhhhc
Q psy10472 96 SS----VS--DEQIEEAAK-------LANAHGFISEF--PSGALDNESEKLVQAALESACKGRTVLMIAH---RLSTVQN 157 (181)
Q Consensus 96 ~~----~~--~~~~~~~~~-------~~~~~~~~~~~--P~~~LD~~~~~~i~~~l~~~~~~~tii~vtH---d~~~~~~ 157 (181)
.. .+ +.....++. .....-++.|+ |+++||+..++.+.+.++. .+.|+|++|| |.+++..
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHH
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHH
Confidence 00 00 111112222 12334467888 9999999999999998865 4677888885 7788865
Q ss_pred -CCeEEEEeCCeEEe
Q psy10472 158 -ADLIVVLQAGQIVE 171 (181)
Q Consensus 158 -~d~v~~l~~G~i~~ 171 (181)
|++ .+|++++
T Consensus 149 i~~r----~~~~i~~ 159 (178)
T 1ye8_A 149 IRRL----PGAVLIE 159 (178)
T ss_dssp HHTC----TTCEEEE
T ss_pred HHhc----CCcEEEE
Confidence 776 4566655
No 87
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=1.4e-18 Score=157.67 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=92.8
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHH--------hcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--------ERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l--------~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
+.+++|++|++++|++++|+||||||||||||++ .|.+.|.++... +++ .
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~-------------------~~~---d 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV-------------------SIV---D 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-------------------ECC---S
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-------------------hHH---H
Confidence 4688999999999999999999999999999999 676666543221 000 0
Q ss_pred CCccc-cHHHHhhcCCCCCCH--HHHHHHHHHhcc-ccccccCCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecCch
Q psy10472 81 VLFAT-SVRENIRYGDSSVSD--EQIEEAAKLANA-HGFISEFPSGALDNESEKLV-QAALESAC--KGRTVLMIAHRLS 153 (181)
Q Consensus 81 ~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~P~~~LD~~~~~~i-~~~l~~~~--~~~tii~vtHd~~ 153 (181)
.+|.. ...+++..+...... .++..+++.+.- .-++.|+|++|+|+.....+ +.+++.+. .|+++|++||+.+
T Consensus 707 ~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 707 CILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE 786 (934)
T ss_dssp EEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred HHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence 01111 222333222111111 222333333322 33568999999999887776 66666653 3899999999988
Q ss_pred hhhcCCeEEEEeCCeEEe
Q psy10472 154 TVQNADLIVVLQAGQIVE 171 (181)
Q Consensus 154 ~~~~~d~v~~l~~G~i~~ 171 (181)
....||++..+.+|++..
T Consensus 787 l~~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 787 LTALANQIPTVNNLHVTA 804 (934)
T ss_dssp GGGGGGTCTTEEEEEEEE
T ss_pred HHHHhcccceeEeeEEEE
Confidence 887799999999998865
No 88
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.75 E-value=2e-20 Score=137.59 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=65.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.. .. .... +++|++.+|..|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~~--~~~~--~~~q~~~l~~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--EY--NIAG--KMIYHFDLYRLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--EE--EETT--EEEEEEECTTCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--ec--cCCC--cceeccccccCCcH
Confidence 45899999999999999999999999999999999999 999999999976642 11 1112 78999888855999
Q ss_pred HHhhc
Q psy10472 89 ENIRY 93 (181)
Q Consensus 89 enl~~ 93 (181)
||+.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99854
No 89
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.75 E-value=5.2e-19 Score=142.73 Aligned_cols=149 Identities=19% Similarity=0.164 Sum_probs=99.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhh-ccCcEEEEccCCCCccc-cHHHHhhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWL-RGNVIGLINQEPVLFAT-SVRENIRYG 94 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~-r~~~i~~v~q~~~l~~~-tv~enl~~~ 94 (181)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++..... ..+ ++..++|++|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998765431 112 12248999999988875 899998642
Q ss_pred C--------------CCCCHHHHHHHHHH-hccccccccCCC---CCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchh
Q psy10472 95 D--------------SSVSDEQIEEAAKL-ANAHGFISEFPS---GALDNESEKLVQAALESAC-K-GRTVLMIAHRLST 154 (181)
Q Consensus 95 ~--------------~~~~~~~~~~~~~~-~~~~~~~~~~P~---~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~ 154 (181)
. .........+.-+. ..+...+...|. -.||+.+.+.+.+.++.+. . +.|+|++||+.+.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 1 11112222211110 000001112232 4788887777888777654 3 8999999998655
Q ss_pred hhcC----------CeEEEEeCCeE
Q psy10472 155 VQNA----------DLIVVLQAGQI 169 (181)
Q Consensus 155 ~~~~----------d~v~~l~~G~i 169 (181)
+... -.|..+..|+-
T Consensus 261 a~gg~~l~i~~~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 261 AKGGVLIPIVRTLKVPIKFVGVGEG 285 (304)
T ss_dssp CCCTTHHHHHHHHCCCEEEEECSSS
T ss_pred ccccHHHHHHHHHCCCeEEEeCCCC
Confidence 3321 46677766653
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.74 E-value=2e-20 Score=143.54 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=98.2
Q ss_pred ccccceeeE-EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhcc--CcEEEEccCCCCccc
Q psy10472 9 KTILKDFNL-RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG--NVIGLINQEPVLFAT 85 (181)
Q Consensus 9 ~~vl~~isl-~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~--~~i~~v~q~~~l~~~ 85 (181)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+.+.+. +...... ..+++.+|+......
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEKKL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTTTE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhCCE
Confidence 456788877 7999999999999999999999999998888888888766433 2221111 113444443210000
Q ss_pred cHHHHhh------cCCCCCCHHH----HHHHHHHhccc--cccccCCCCCC--CHHHHHHHHHHHHHhc--CCcEEEEEe
Q psy10472 86 SVRENIR------YGDSSVSDEQ----IEEAAKLANAH--GFISEFPSGAL--DNESEKLVQAALESAC--KGRTVLMIA 149 (181)
Q Consensus 86 tv~enl~------~~~~~~~~~~----~~~~~~~~~~~--~~~~~~P~~~L--D~~~~~~i~~~l~~~~--~~~tii~vt 149 (181)
.+.+... +.....+... +...+...+.. -++-|+|++.+ |+.....+++.++.+. .|+|+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~ 165 (235)
T 2w0m_A 86 IIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATS 165 (235)
T ss_dssp EEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 1101000 0001112222 22233334555 56789999777 9988888888887753 489999999
Q ss_pred cCc--------hhhhc-CCeEEEEeCC
Q psy10472 150 HRL--------STVQN-ADLIVVLQAG 167 (181)
Q Consensus 150 Hd~--------~~~~~-~d~v~~l~~G 167 (181)
|+. ..+.. ||+|++|+..
T Consensus 166 h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 166 QYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp C-----------CHHHHCSEEEEEEEE
T ss_pred ccCcccccccccchheeeeEEEEEEEE
Confidence 998 44655 9999999754
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=3.8e-19 Score=142.39 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=96.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCEECCCCChhhhccCcEEEEccCCCC--cc-
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGVDLKHLDGTWLRGNVIGLINQEPVL--FA- 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l--~~- 84 (181)
.++|+++++.+++|++++|+||||||||||+++|+|...|.+| .|.+.+.+ .+...++++ +..++++..+ ++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r-~~~~~~~~~~~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAED-LIGLHNRVRLRQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHH-HHHHHTTCCGGGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHH-HHHHHcCCChhhccc
Confidence 3579999999999999999999999999999999999999888 77554433 233333333 3334443322 11
Q ss_pred ccH-----------HHHh-h-----cCC--CCCCHHHHHHHH----HHhccccccccCCCC---C---CCH-HHHHHHHH
Q psy10472 85 TSV-----------RENI-R-----YGD--SSVSDEQIEEAA----KLANAHGFISEFPSG---A---LDN-ESEKLVQA 134 (181)
Q Consensus 85 ~tv-----------~enl-~-----~~~--~~~~~~~~~~~~----~~~~~~~~~~~~P~~---~---LD~-~~~~~i~~ 134 (181)
.+. .+.+ . +.. .......+.+.+ ...+..-++-|+|++ + +|. .....+.+
T Consensus 98 l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~ 177 (296)
T 1cr0_A 98 LKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT 177 (296)
T ss_dssp HHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH
Confidence 010 0111 0 111 112222222221 222344566788998 4 455 55677888
Q ss_pred HHHHhc-C-CcEEEEEecCc--h--------------------hhhc-CCeEEEEeCCeE
Q psy10472 135 ALESAC-K-GRTVLMIAHRL--S--------------------TVQN-ADLIVVLQAGQI 169 (181)
Q Consensus 135 ~l~~~~-~-~~tii~vtHd~--~--------------------~~~~-~d~v~~l~~G~i 169 (181)
.|+.++ + |+|||++||+. + .+.. ||+|++|++|+.
T Consensus 178 ~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 178 KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 887764 3 89999999995 4 5554 999999998864
No 92
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.73 E-value=2.5e-19 Score=147.73 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=61.6
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEc-cCCCC---ccccH
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLIN-QEPVL---FATSV 87 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~-q~~~l---~~~tv 87 (181)
++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.. .+.....+ +.++|++ |++.+ +..|+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~~~~~~~-~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--ELFLPDHP-NHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CCCCTTCS-SEEEEECC----------CCH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--ccCccccC-CEEEEeecCccccccccccCH
Confidence 499999999999999999999999999999999999999999999842 33322233 3589999 88764 45699
Q ss_pred HHHhhcC
Q psy10472 88 RENIRYG 94 (181)
Q Consensus 88 ~enl~~~ 94 (181)
++||.++
T Consensus 242 ~~~i~~~ 248 (361)
T 2gza_A 242 ATLLRSC 248 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 93
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.71 E-value=1.6e-20 Score=154.94 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=99.3
Q ss_pred ccceeeEEecC--CcEEEEECCCCCcHHHHHHHHhcCCCCCc----ceEEEC----CEECCCCChhhhccCcEEEEccCC
Q psy10472 11 ILKDFNLRIPA--GQKVAIVGSSGNGKSTIVALLERFYDVSS----GNITIS----GVDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 11 vl~~isl~i~~--Ge~~~liG~nGsGKSTLl~~l~gl~~p~~----G~i~i~----g~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+++++ |.++ ..+...+ . .|++++|++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~-~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-P-QMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-H-HHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-H-HHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 998874 4443 2333333 2 388899988
Q ss_pred CCccccHHHHhhcCCCCCCHHHH-------------HHHHHHhccccccccC---C------CCCCCHHHHHHHHHHHHH
Q psy10472 81 VLFATSVRENIRYGDSSVSDEQI-------------EEAAKLANAHGFISEF---P------SGALDNESEKLVQAALES 138 (181)
Q Consensus 81 ~l~~~tv~enl~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~---P------~~~LD~~~~~~i~~~l~~ 138 (181)
.+|..|+.+|+.++......... ..++......-++.++ | +.++|+..+..+.+.+.+
T Consensus 234 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 234 IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 77778999999876422111111 1111111222222233 4 458999999999999976
Q ss_pred hc--CCcEEEEEecCchhhhcCCeEEEE
Q psy10472 139 AC--KGRTVLMIAHRLSTVQNADLIVVL 164 (181)
Q Consensus 139 ~~--~~~tii~vtHd~~~~~~~d~v~~l 164 (181)
+. .+.++|+++|.-.....++++..+
T Consensus 314 l~~~~~~~ililde~~~~~r~~~~i~~i 341 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPSYLDRYNQVKAVI 341 (365)
T ss_dssp HHHGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 53 389999999863332335554444
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.71 E-value=1.7e-18 Score=154.41 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=88.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
+.+++|+||+ |++++|+||||||||||||+++|+.. |..|.+. + . .+ ..+++++| +|.. +
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p-a-~~-~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P-A-EE-AHLPLFDG---IYTRIG 627 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S-S-SE-EEECCCSE---EEEECC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e-h-hc-cceeeHHH---hhccCC
Confidence 5688999998 99999999999999999999999874 6777642 1 1 12 23788877 5664 8
Q ss_pred HHHHhhcCCCCCCHHH--HHHHHHHhc-cccccccCC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEEecCchhhhcC
Q psy10472 87 VRENIRYGDSSVSDEQ--IEEAAKLAN-AHGFISEFP---SGALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQNA 158 (181)
Q Consensus 87 v~enl~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~P---~~~LD~~~~-~~i~~~l~~~~~~~tii~vtHd~~~~~~~ 158 (181)
+.||+..+.+....+. +..++..+. ..-++.|+| |++||..+. ..+.+.+.+ .|+++|++||+.+....|
T Consensus 628 ~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 628 ASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp C------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9999988743221222 122232222 234668899 899999875 568887765 589999999999876554
No 95
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.71 E-value=3.2e-18 Score=139.40 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=106.0
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh-----hccCcEEEEccCCCCccc-cHHHHhh
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW-----LRGNVIGLINQEPVLFAT-SVRENIR 92 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~-----~r~~~i~~v~q~~~l~~~-tv~enl~ 92 (181)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... .++..+.+++|...+++. ++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999987654322 122346799999988875 9999987
Q ss_pred cCC--------------CCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhh-
Q psy10472 93 YGD--------------SSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTV- 155 (181)
Q Consensus 93 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~- 155 (181)
++. .......+.+..... ..+..++|+..||+.+.+.+.+.++.+. .+.|+|++||..+..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~--ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~ 283 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIA--RVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADAR 283 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHH--HHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHH--HHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccc
Confidence 541 011111111111111 1123566788899888778888777664 389999999965321
Q ss_pred --------hc-CCeEEEEeCCeEE
Q psy10472 156 --------QN-ADLIVVLQAGQIV 170 (181)
Q Consensus 156 --------~~-~d~v~~l~~G~i~ 170 (181)
.. .-.|..+..|+-+
T Consensus 284 ~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEECSSST
T ss_pred hhHHHHHHHHHCCCEEEEeCCCCc
Confidence 12 4678888888654
No 96
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.71 E-value=1.7e-18 Score=155.12 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=91.9
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S 86 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t 86 (181)
+.+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|. .+ +. . + ..+++++| +|.. +
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa-~-~-~~i~~~~~---i~~~~~ 658 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA-Q-K-VEIGPIDR---IFTRVG 658 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS-S-E-EEECCCCE---EEEEEC
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch-h-c-ccceeHHH---HHhhCC
Confidence 4689999999 99999999999999999999999997532 2231 11 11 1 1 13666665 5654 8
Q ss_pred HHHHhhcCCCCCCHH--HHHHHHHHhc-cccccccCCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecCchhhhcCCe
Q psy10472 87 VRENIRYGDSSVSDE--QIEEAAKLAN-AHGFISEFPSGALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNADL 160 (181)
Q Consensus 87 v~enl~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~--~~~tii~vtHd~~~~~~~d~ 160 (181)
+.+|+..+......+ ++..++..+. ..-++.|+|++|+|+.....+ +.+++.+. .|.++|++||+.+....||+
T Consensus 659 ~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~ 738 (800)
T 1wb9_A 659 AADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK 738 (800)
T ss_dssp -----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhh
Confidence 889987764333222 2233333332 234678999999999766554 66776653 38999999999987766777
Q ss_pred EEEEeCCeEE
Q psy10472 161 IVVLQAGQIV 170 (181)
Q Consensus 161 v~~l~~G~i~ 170 (181)
+..+.+|++.
T Consensus 739 ~~~v~n~~~~ 748 (800)
T 1wb9_A 739 MEGVANVHLD 748 (800)
T ss_dssp STTEEEEEEE
T ss_pred hhceEEEEEE
Confidence 6556666553
No 97
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.70 E-value=9.9e-18 Score=153.48 Aligned_cols=137 Identities=17% Similarity=0.182 Sum_probs=96.0
Q ss_pred ccccceeeEEecC-------CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCC
Q psy10472 9 KTILKDFNLRIPA-------GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEP 80 (181)
Q Consensus 9 ~~vl~~isl~i~~-------Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~ 80 (181)
..+++|++|++++ |++++|+||||||||||||++ |++.+ .+ + +| ||||++
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~a-q-iG~~Vpq~~ 826 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MA-Q-MGCYVPAEV 826 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HH-T-TTCCEESSE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------Hh-h-eeEEeccCc
Confidence 5699999999987 999999999999999999999 98763 11 2 45 899975
Q ss_pred CCccccHHHHhhc--CCCC-----CCH-----HHHHHHHHHhcc-ccccccCCCCCCCHHH-HHHHHHHHHHhc-C-CcE
Q psy10472 81 VLFATSVRENIRY--GDSS-----VSD-----EQIEEAAKLANA-HGFISEFPSGALDNES-EKLVQAALESAC-K-GRT 144 (181)
Q Consensus 81 ~l~~~tv~enl~~--~~~~-----~~~-----~~~~~~~~~~~~-~~~~~~~P~~~LD~~~-~~~i~~~l~~~~-~-~~t 144 (181)
. ..++.++|.. +... .+. .++..++..+.- .-++.|+|++|+|+.. ...++.+++.+. + |++
T Consensus 827 ~--~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~ 904 (1022)
T 2o8b_B 827 C--RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCR 904 (1022)
T ss_dssp E--EECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCE
T ss_pred C--CCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCE
Confidence 3 2355555532 1110 010 112222222222 2356899999999987 455778887764 4 899
Q ss_pred EEEEecCchhhhc-CCeEEEEeCCeEE
Q psy10472 145 VLMIAHRLSTVQN-ADLIVVLQAGQIV 170 (181)
Q Consensus 145 ii~vtHd~~~~~~-~d~v~~l~~G~i~ 170 (181)
+|++||+++.+.. ||++.++ +|++.
T Consensus 905 vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 905 TLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999876 9988876 47765
No 98
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.69 E-value=3.1e-18 Score=145.48 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=100.1
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhh-ccCcEEEEccCCCCccc-
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWL-RGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~-r~~~i~~v~q~~~l~~~- 85 (181)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..... ...+ +++.++|++|++.+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887754321 0112 22349999999887764
Q ss_pred cHHHHhhcCC-------------CCCCHH-HHHHHHHHhcccc-ccccCCC---CCCCHHHHHHHHHHHHHhc--CCcEE
Q psy10472 86 SVRENIRYGD-------------SSVSDE-QIEEAAKLANAHG-FISEFPS---GALDNESEKLVQAALESAC--KGRTV 145 (181)
Q Consensus 86 tv~enl~~~~-------------~~~~~~-~~~~~~~~~~~~~-~~~~~P~---~~LD~~~~~~i~~~l~~~~--~~~ti 145 (181)
++++|+.++. ....+. .+.++.+...... +....|. --||+.+.+..++.++.+. -+.|.
T Consensus 363 tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itg 442 (503)
T 2yhs_A 363 VIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTG 442 (503)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCE
Confidence 9999997641 111222 2222222221111 1111232 1356655544445555443 37899
Q ss_pred EEEecCchh---------hhc-CCeEEEEeCCeE
Q psy10472 146 LMIAHRLST---------VQN-ADLIVVLQAGQI 169 (181)
Q Consensus 146 i~vtHd~~~---------~~~-~d~v~~l~~G~i 169 (181)
|++||--.. +.. .-.|.++..|+-
T Consensus 443 vIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 443 ITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp EEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred EEEEcCCCcccccHHHHHHHHHCCCEEEEecCCC
Confidence 999993331 111 346667766643
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=4.1e-18 Score=139.89 Aligned_cols=137 Identities=17% Similarity=0.111 Sum_probs=94.9
Q ss_pred ccee-eEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCc----ce-EEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472 12 LKDF-NLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSS----GN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83 (181)
Q Consensus 12 l~~i-sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~----G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~ 83 (181)
|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |+|++++.. . + +++++++|.+.++
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~----~-~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----P-ERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--C----H-HHHHHHHHTTTCC
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--C----H-HHHHHHHHHcCCC
Confidence 4444 5789999999999999999999999999998 6776 67 899886531 1 1 2378899998888
Q ss_pred cccHHHHhhcCCCCCCH---HHHHHHHHHh--------ccccccccCCCCCCCHHH------------HHHHHHHHHHhc
Q psy10472 84 ATSVRENIRYGDSSVSD---EQIEEAAKLA--------NAHGFISEFPSGALDNES------------EKLVQAALESAC 140 (181)
Q Consensus 84 ~~tv~enl~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~P~~~LD~~~------------~~~i~~~l~~~~ 140 (181)
..++.+|+.+....... +.+..+...+ +..-++-|+|++.+|+.. ...++..|..+.
T Consensus 193 ~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la 272 (349)
T 1pzn_A 193 PDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA 272 (349)
T ss_dssp HHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 77999999876422111 1122222222 344567789999999852 244555555543
Q ss_pred --CCcEEEEEecCchhh
Q psy10472 141 --KGRTVLMIAHRLSTV 155 (181)
Q Consensus 141 --~~~tii~vtHd~~~~ 155 (181)
.++|+|+++|.....
T Consensus 273 ~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 273 NLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHTTCEEEEEEECC---
T ss_pred HHcCcEEEEEccccccc
Confidence 489999999987644
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.66 E-value=3.3e-17 Score=148.35 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=82.0
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT- 85 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~- 85 (181)
.+.|++|+||++++|++++|+||||||||||||+++++.... .|.. .+.. ...++++ ..+|..
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~---------vpa~---~~~i~~~---d~i~~~i 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY---------VPAE---EATIGIV---DGIFTRM 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC---------BSSS---EEEEECC---SEEEEEC
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc---------ccch---hhhhhHH---HHHHHhC
Confidence 356899999999999999999999999999999998653211 1110 0000 0012221 223433
Q ss_pred cHHHHhhcCCCCCCH--HHHHHHHHHhc-cccccccCCCCCCCHHHHHHHH-HHHHHh-c-CCcEEEEEecCchhhhcCC
Q psy10472 86 SVRENIRYGDSSVSD--EQIEEAAKLAN-AHGFISEFPSGALDNESEKLVQ-AALESA-C-KGRTVLMIAHRLSTVQNAD 159 (181)
Q Consensus 86 tv~enl~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i~-~~l~~~-~-~~~tii~vtHd~~~~~~~d 159 (181)
.+.+++..+...... .+...++..+. ..-++.|+|++|||+.....+. .+++.+ . .|+|+|++||+++.+..||
T Consensus 724 g~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 724 GAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp ----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHH
T ss_pred ChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHh
Confidence 566676554332222 22233333322 2346789999999999887776 666665 3 4899999999998775444
No 101
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.64 E-value=1.3e-17 Score=137.95 Aligned_cols=124 Identities=20% Similarity=0.245 Sum_probs=85.6
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEcc-----CCCCc
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQ-----EPVLF 83 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q-----~~~l~ 83 (181)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. + .++. .+++++| ++..|
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~-~~~~v~Q~~~g~~~~~~ 198 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKH-KKSIVNQREVGEDTKSF 198 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCC-SSSEEEEEEBTTTBSCS
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhcc-CceEEEeeecCCCHHHH
Confidence 3566665 8899999999999999999999999999998 899987765442 1 2233 4889999 44444
Q ss_pred cccHHHHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEE
Q psy10472 84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV 163 (181)
Q Consensus 84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~ 163 (181)
..++++|+.. +..-++.++|+ |++.. ..+++....|.+++.++|+.+....|||++.
T Consensus 199 ~~~l~~~L~~-----------------~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALRE-----------------DPDVIFVGEMR---DLETV---ETALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTS-----------------CCSEEEESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhh-----------------CcCEEEECCCC---CHHHH---HHHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 4444444433 22345667887 66553 3344444458899999998764444666543
No 102
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.64 E-value=1.5e-16 Score=124.15 Aligned_cols=70 Identities=10% Similarity=0.230 Sum_probs=46.3
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
.+++|+++||++++|++++|+||||||||||+++|+|++ |.+.++ ..++ .++|++|+. +++ .|
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~-~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQR-KVVILSQDR-FYKVLT 74 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGC-SEEEEEGGG-GBCCCC
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCC-ceEEEeCCc-CccccC
Confidence 356999999999999999999999999999999999976 555443 1233 499999995 554 48
Q ss_pred HHHHhhc
Q psy10472 87 VRENIRY 93 (181)
Q Consensus 87 v~enl~~ 93 (181)
+.+++.+
T Consensus 75 ~~~~~~~ 81 (245)
T 2jeo_A 75 AEQKAKA 81 (245)
T ss_dssp HHHHHHH
T ss_pred HhHhhhh
Confidence 9888764
No 103
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.64 E-value=6.5e-18 Score=127.62 Aligned_cols=140 Identities=13% Similarity=0.119 Sum_probs=85.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCC-----
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDS----- 96 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~----- 96 (181)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .++ +.+||++|+..-. .+...++.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~-~~ig~~~~~~~g~-~~~l~~~~~~~~~~~~~ 74 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGG-RRIGFDVVTLSGT-RGPLSRVGLEPPPGKRE 74 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTS-SEEEEEEEETTSC-EEEEEECCCCCCSSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhh-ceEEEEEEecccc-eehhhcccccCCccccc
Confidence 78999999999999999999999999 999 999998774432 234 3599999985110 011112222111
Q ss_pred ------CCCHHHHHH----HHHH------hccccccccC--CCCCCCHHHHHHHHHHHHHhcCCcEEE----EEecCchh
Q psy10472 97 ------SVSDEQIEE----AAKL------ANAHGFISEF--PSGALDNESEKLVQAALESACKGRTVL----MIAHRLST 154 (181)
Q Consensus 97 ------~~~~~~~~~----~~~~------~~~~~~~~~~--P~~~LD~~~~~~i~~~l~~~~~~~tii----~vtHd~~~ 154 (181)
.......++ +++. .+..-++.|+ |+..+|+...+.+.+++.. ..++| .|+|+.+
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~- 150 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP- 150 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-
T ss_pred cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-
Confidence 001122111 1111 1112345677 7888898877777777653 23444 3449874
Q ss_pred hhcCCeEEEEeCCeEEe
Q psy10472 155 VQNADLIVVLQAGQIVE 171 (181)
Q Consensus 155 ~~~~d~v~~l~~G~i~~ 171 (181)
...+|+|..+.+|++++
T Consensus 151 ~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 151 LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp CTTHHHHHTTCCSEEEE
T ss_pred hHHHHHHeecCCcEEEE
Confidence 22356666678888876
No 104
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=1.7e-16 Score=122.60 Aligned_cols=139 Identities=15% Similarity=0.156 Sum_probs=83.0
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhc--CCCC-----CcceEEECCEECCCCChhh---hccCcEEEEccCCCCccccH
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLER--FYDV-----SSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFATSV 87 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~g--l~~p-----~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~tv 87 (181)
-|++|++++|+||||||||||++.+++ +.+| ..|.+++++.+.. +... +.+ .+++.+| .+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--~~~~~~~~~~-~~g~~~~-------~~ 89 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--RPERLLAVAE-RYGLSGS-------DV 89 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--CHHHHHHHHH-HTTCCHH-------HH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--CHHHHHHHHH-HcCCCHH-------HH
Confidence 378999999999999999999999999 5655 6788999886521 2221 222 2444443 35
Q ss_pred HHHhhcCCCCCCHHH-------HHHHHHHhccccccccCCCCCCCHH-------H-----HHHHHHHHHHh-c-CCcEEE
Q psy10472 88 RENIRYGDSSVSDEQ-------IEEAAKLANAHGFISEFPSGALDNE-------S-----EKLVQAALESA-C-KGRTVL 146 (181)
Q Consensus 88 ~enl~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~P~~~LD~~-------~-----~~~i~~~l~~~-~-~~~tii 146 (181)
.+|+.+... ..... +.+.++..+..-++-|.|++.+|+. . ...++..+..+ + .|+|||
T Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi 168 (243)
T 1n0w_A 90 LDNVAYARA-FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVV 168 (243)
T ss_dssp HHTEEEEEC-CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhCeEEEec-CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 566654322 12111 2222222344456678899888874 2 23344444443 2 389999
Q ss_pred EEecCchhh-------------------h-cCCeEEEEeCC
Q psy10472 147 MIAHRLSTV-------------------Q-NADLIVVLQAG 167 (181)
Q Consensus 147 ~vtHd~~~~-------------------~-~~d~v~~l~~G 167 (181)
+++|..... . .||.+++|+.+
T Consensus 169 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 169 ITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp EEC-------------------------CCTTCEEEEEEEC
T ss_pred EEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 999965432 2 48999999865
No 105
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.62 E-value=8.2e-17 Score=129.60 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=62.6
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCC------------
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPV------------ 81 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~------------ 81 (181)
|++..|++++|+|||||||||||++|+|+.+|++|+|.+ +|++++.... ..+.+.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~-~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ-LLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-EEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE-EEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 446689999999999999999999999999999999999 8988765442 222224899999985
Q ss_pred ----Cccc-cHHHHhhcCCC---CCCHHHHHHHHHHhcc
Q psy10472 82 ----LFAT-SVRENIRYGDS---SVSDEQIEEAAKLANA 112 (181)
Q Consensus 82 ----l~~~-tv~enl~~~~~---~~~~~~~~~~~~~~~~ 112 (181)
+|+. |+ +|+.|+.. .....++.++++.+++
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCC
Confidence 4654 88 99988632 1223456777777766
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.60 E-value=5.4e-16 Score=133.45 Aligned_cols=139 Identities=16% Similarity=0.094 Sum_probs=89.6
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcce--EEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGN--ITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY 93 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~--i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~ 93 (181)
+..|.+|++++|+||||||||||+++++|+..|. |. +++.+++ +...+..+ . . -+..++.+....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee----~~~~l~~~-~----~---~~g~~~~~~~~~ 341 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE----SRAQLLRN-A----Y---SWGMDFEEMERQ 341 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS----CHHHHHHH-H----H---TTSCCHHHHHHT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC----CHHHHHHH-H----H---HcCCCHHHHHhC
Confidence 3479999999999999999999999999998885 54 3444432 11111110 0 0 011122221111
Q ss_pred C-----CC---CCCH-HHHHHHHH---HhccccccccCCCCCCCHH-----HHHHHHHHHHHhc-CCcEEEEEecCc---
Q psy10472 94 G-----DS---SVSD-EQIEEAAK---LANAHGFISEFPSGALDNE-----SEKLVQAALESAC-KGRTVLMIAHRL--- 152 (181)
Q Consensus 94 ~-----~~---~~~~-~~~~~~~~---~~~~~~~~~~~P~~~LD~~-----~~~~i~~~l~~~~-~~~tii~vtHd~--- 152 (181)
+ .. ..+. +..+.++. ..+..-++.| |+++||.. .++.+.++++.++ .|.|+|++||+.
T Consensus 342 g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~ 420 (525)
T 1tf7_A 342 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFM 420 (525)
T ss_dssp TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSS
T ss_pred CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccccc
Confidence 1 10 0122 22222222 2334456678 99999999 8999999888764 589999999998
Q ss_pred -------hhhhc-CCeEEEEeCCe
Q psy10472 153 -------STVQN-ADLIVVLQAGQ 168 (181)
Q Consensus 153 -------~~~~~-~d~v~~l~~G~ 168 (181)
..+.. ||+|++|++|+
T Consensus 421 ~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 421 GAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CcccccCcccceeeeEEEEEEEEE
Confidence 66665 99999999886
No 107
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.60 E-value=4.5e-16 Score=125.96 Aligned_cols=124 Identities=13% Similarity=0.128 Sum_probs=85.0
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCC--
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDS-- 96 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~-- 96 (181)
+++|++++|+||||||||||+++|+|+++|..|. . .+++|+|++.+++.|+.+|+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~-~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------P-RVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------C-CEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------C-eEEEEecCccCCcccHHHHHHHHHhcC
Confidence 8899999999999999999999999999997653 2 3899999998887799999976421
Q ss_pred ---CCCHHHHHHHHHHhccc----------------------------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q psy10472 97 ---SVSDEQIEEAAKLANAH----------------------------GFISEFPSGALDNESEKLVQAALESACKGRTV 145 (181)
Q Consensus 97 ---~~~~~~~~~~~~~~~~~----------------------------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~ti 145 (181)
..+.+.+.+.++.++.. -++.++|+..+|+... .+.... + ..
T Consensus 149 ~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~-D-~~ 221 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF-D-FS 221 (312)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC-S-EE
T ss_pred CChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc-C-cE
Confidence 12344555666554310 0244568888875210 111111 3 45
Q ss_pred EEEecCchhh-hc-CCeEEEEeCC
Q psy10472 146 LMIAHRLSTV-QN-ADLIVVLQAG 167 (181)
Q Consensus 146 i~vtHd~~~~-~~-~d~v~~l~~G 167 (181)
|+|+|+.+.. .+ ++|.+.+.++
T Consensus 222 I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 222 LYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECHHHHHHHHHHHHHHHTTT
T ss_pred EEEECCHHHHHHHHHHHHHHHHhc
Confidence 8888888765 33 6666555554
No 108
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.7e-16 Score=132.91 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=55.1
Q ss_pred ccccceeeEEecCCcE--EEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-c
Q psy10472 9 KTILKDFNLRIPAGQK--VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-T 85 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~ 85 (181)
.+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++ .++|++|++.+++ .
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ-SNTYDLQESNVRLKL 97 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE-EEEEEEEC--CEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe-eEEEEeecCcccccc
Confidence 35 9999999999999 9999999999999999999984 3454443322222233 5999999998875 4
Q ss_pred cHHHHhhcCCC
Q psy10472 86 SVRENIRYGDS 96 (181)
Q Consensus 86 tv~enl~~~~~ 96 (181)
|+.||+.++..
T Consensus 98 tv~D~~~~g~~ 108 (427)
T 2qag_B 98 TIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEECCCC-
T ss_pred chhhhhhhhhc
Confidence 99999988753
No 109
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.59 E-value=4.5e-16 Score=125.33 Aligned_cols=132 Identities=19% Similarity=0.154 Sum_probs=62.1
Q ss_pred ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC-CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-
Q psy10472 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF-YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA- 84 (181)
Q Consensus 7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~- 84 (181)
+.+.++++++|+| +|+||||||||||+++|+|. ..|++| +.++|.++.. . .. . ..+++++|...++.
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~-~~~~~~~q~~~~~~~ 77 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-I-EASTVEIEERGVKLR 77 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC---CCEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-E-eeEEEEecCCCcccC
Confidence 3456999999998 99999999999999999998 889999 8888877643 1 11 2 23799999877654
Q ss_pred ccHHHHhhcCCCCCC----HHHHH-------HHHHHh-ccc-----------cccccCCCC-CCCHHHHHHHHHHHHHhc
Q psy10472 85 TSVRENIRYGDSSVS----DEQIE-------EAAKLA-NAH-----------GFISEFPSG-ALDNESEKLVQAALESAC 140 (181)
Q Consensus 85 ~tv~enl~~~~~~~~----~~~~~-------~~~~~~-~~~-----------~~~~~~P~~-~LD~~~~~~i~~~l~~~~ 140 (181)
.|+.|+..++..... ..... .....+ +.. -++.++|++ +||+... ++++.+.
T Consensus 78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~ 153 (301)
T 2qnr_A 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIH 153 (301)
T ss_dssp EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHT
T ss_pred cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHH
Confidence 488888877422100 01111 111111 111 345677987 5999874 3444443
Q ss_pred -C-CcEEEEEecCch
Q psy10472 141 -K-GRTVLMIAHRLS 153 (181)
Q Consensus 141 -~-~~tii~vtHd~~ 153 (181)
+ +.++|+++||+.
T Consensus 154 ~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 154 NKVNIVPVIAKADTL 168 (301)
T ss_dssp TTSCEEEEECCGGGS
T ss_pred hcCCEEEEEEeCCCC
Confidence 2 789999999974
No 110
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.59 E-value=3.3e-16 Score=119.09 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=78.5
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc---ccHHHHhhcCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA---TSVRENIRYGD 95 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~---~tv~enl~~~~ 95 (181)
.++|++++|+||||||||||+++|+|++.| .++|++|++.+++ .++.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 578999999999999999999999999865 2899999987763 37888766542
Q ss_pred C---CCCHHHHHHHHHHhccccc---------------------------------cccCCCCC-------CCHHHHHHH
Q psy10472 96 S---SVSDEQIEEAAKLANAHGF---------------------------------ISEFPSGA-------LDNESEKLV 132 (181)
Q Consensus 96 ~---~~~~~~~~~~~~~~~~~~~---------------------------------~~~~P~~~-------LD~~~~~~i 132 (181)
. ....+.+.++++.+++... +.++|+++ ||+.....+
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~ 139 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERF 139 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHH
Confidence 1 1234555566655433211 11335666 888888888
Q ss_pred HHHHHHh--cCCcEEEEEecCc
Q psy10472 133 QAALESA--CKGRTVLMIAHRL 152 (181)
Q Consensus 133 ~~~l~~~--~~~~tii~vtHd~ 152 (181)
...+.+. .+|.|++.++|+.
T Consensus 140 ~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 140 IRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 8888653 3589999999974
No 111
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.57 E-value=1.1e-15 Score=127.55 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=87.1
Q ss_pred EecCCcEEEEECCCCCcHHHHHH--HHhcCCCCCcc-----eEEECCEECCCCChhhhc--cCcEEEEccCCCCccccHH
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVA--LLERFYDVSSG-----NITISGVDLKHLDGTWLR--GNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~--~l~gl~~p~~G-----~i~i~g~~i~~~~~~~~r--~~~i~~v~q~~~l~~~tv~ 88 (181)
-|++|++++|+||||||||||++ ++.++.+++.| .++|++++. .+...++ .+.+++.+ .++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~--~~~~rl~~~a~~~gl~~-------~~vl 244 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT--FRPVRLVSIAQRFGLDP-------DDAL 244 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC--CCHHHHHHHHHHTTCCH-------HHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc--cCHHHHHHHHHHcCCCh-------HhHh
Confidence 37899999999999999999999 44677776544 889988753 2222211 11244433 3678
Q ss_pred HHhhcCCCCCCH---HHHHHHH---HHhccccccccCCCCCCCHHHH------------HHHHHHHHHhc-C-CcEEEEE
Q psy10472 89 ENIRYGDSSVSD---EQIEEAA---KLANAHGFISEFPSGALDNESE------------KLVQAALESAC-K-GRTVLMI 148 (181)
Q Consensus 89 enl~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~P~~~LD~~~~------------~~i~~~l~~~~-~-~~tii~v 148 (181)
+|+.+....... +.+..+. ......-++-|.|++.+|.... ..++..|+.+. + |+|||+|
T Consensus 245 eni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv 324 (400)
T 3lda_A 245 NNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT 324 (400)
T ss_dssp HTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred hcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 888775332211 1122222 2233444556778887775422 45666666653 3 8999999
Q ss_pred ecCc-------------------hhhhc-CCeEEEEeCC
Q psy10472 149 AHRL-------------------STVQN-ADLIVVLQAG 167 (181)
Q Consensus 149 tHd~-------------------~~~~~-~d~v~~l~~G 167 (181)
+|.. ..+.. +|.++.|+.+
T Consensus 325 ~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 325 NQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp EEC--------------------CHHHHHCSEEEEEEEC
T ss_pred EeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9982 12344 8999999876
No 112
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.56 E-value=1.5e-17 Score=126.15 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=80.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYD-------------VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS 86 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t 86 (181)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++. + .|+..++..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~-i---~~~~~l~~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRD-I---AAGDFIEHAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH-H---HHTCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHH-H---HcCCCEeeee
Confidence 5799999999999999999999999875 77786 47766655555555532 2 5776666667
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHh--------------------ccccccccC--------CCCCCCHHHHHHHHHHHHH
Q psy10472 87 VRENIRYGDSSVSDEQIEEAAKLA--------------------NAHGFISEF--------PSGALDNESEKLVQAALES 138 (181)
Q Consensus 87 v~enl~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~--------P~~~LD~~~~~~i~~~l~~ 138 (181)
+.+|+ ++. ..+.++++++.. ...-.+.++ +++++|.++.+.+.+.+..
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~ 151 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAA 151 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77776 442 234444444321 001011122 3467787777888877765
Q ss_pred hcCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472 139 ACKGRTVLMIAHRLSTVQNADLIVVLQA 166 (181)
Q Consensus 139 ~~~~~tii~vtHd~~~~~~~d~v~~l~~ 166 (181)
..++ +.++| +. ..+|+|+++++
T Consensus 152 ~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 152 ARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHH---HHHhh--cc-CCceEEEECCC
Confidence 4322 23445 11 45888887754
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.56 E-value=2.2e-16 Score=129.92 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=81.8
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHHhhcCC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRENIRYGD 95 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~enl~~~~ 95 (181)
.+.+|++++|+|||||||||||++|+|+++|+ +|.|...+.++ ... .+. ..++++|...... .+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~~-~~~~v~q~~~~~~~~~~~~------ 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HES-KKCLVNQREVHRDTLGFSE------ 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CCC-SSSEEEEEEBTTTBSCHHH------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hhc-cccceeeeeeccccCCHHH------
Confidence 56788999999999999999999999999987 56665433322 211 111 2456666532221 12221
Q ss_pred CCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472 96 SSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG 167 (181)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G 167 (181)
.+..++. .+..-++.++|+ |.++.+.+.+. ...|.++++++|+.+.+..|||++.|..|
T Consensus 188 ------~La~aL~-~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ------ALRSALR-EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp ------HHHHHTT-SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred ------HHHHHhh-hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 2223332 244456788898 66654443333 34589999999999988669998887543
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.55 E-value=1.7e-16 Score=118.83 Aligned_cols=137 Identities=16% Similarity=0.093 Sum_probs=86.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHHhhcC------
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRENIRYG------ 94 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~enl~~~------ 94 (181)
|++++|+||||||||||+++|++ |.+|.++++|.++... . .+++++|....+. .++++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------V-VGGYRPPWESDELLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------C-CTTCCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------h-ccccccCccchhHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999997 6689999988654321 1 2467777654443 3777776532
Q ss_pred CC-------CCCHHHHHHHHHHh---cc------c-------cccccC---C-CCCCCHHHHHHHHHHHHHhc-CCcEEE
Q psy10472 95 DS-------SVSDEQIEEAAKLA---NA------H-------GFISEF---P-SGALDNESEKLVQAALESAC-KGRTVL 146 (181)
Q Consensus 95 ~~-------~~~~~~~~~~~~~~---~~------~-------~~~~~~---P-~~~LD~~~~~~i~~~l~~~~-~~~tii 146 (181)
.. .........+.+.+ +. . .+..+. + ..++|+...+. ++.+.... .+.++|
T Consensus 72 ~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 72 AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCCCccEEE
Confidence 00 01222222221211 10 0 011111 1 24788887777 77777654 478999
Q ss_pred EEecC-chhhhc-CCeEEEEeCCeEEe
Q psy10472 147 MIAHR-LSTVQN-ADLIVVLQAGQIVE 171 (181)
Q Consensus 147 ~vtHd-~~~~~~-~d~v~~l~~G~i~~ 171 (181)
.+||. ++.+.. ||+|+ ++|+++.
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred eCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 99998 888866 99998 9999876
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.53 E-value=3.9e-14 Score=107.69 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=88.5
Q ss_pred ccceeeE-EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472 11 ILKDFNL-RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE 89 (181)
Q Consensus 11 vl~~isl-~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e 89 (181)
.|+.+.. -+++|++++|+||||||||||++.+++ .+..+.++++... ..+...++. ..+...+....+.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~ 78 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ-----MAETRGLNPEEALS 78 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH-----HHHTTTCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH-----HHHhcCCChHHHhh
Confidence 3444443 589999999999999999999999999 4445566666543 123222221 11111222224556
Q ss_pred HhhcCCCC-CCH--HHHHHHHHHh--ccccccccCCCCCCCHHHH--------HHHHHHHHHhc-C-CcEEEEEecCch-
Q psy10472 90 NIRYGDSS-VSD--EQIEEAAKLA--NAHGFISEFPSGALDNESE--------KLVQAALESAC-K-GRTVLMIAHRLS- 153 (181)
Q Consensus 90 nl~~~~~~-~~~--~~~~~~~~~~--~~~~~~~~~P~~~LD~~~~--------~~i~~~l~~~~-~-~~tii~vtHd~~- 153 (181)
++.+.... ... +.+..+...+ +..-++-|+|++.+|+... ..+...|+.+. + ++|+|+++|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~ 158 (220)
T 2cvh_A 79 RFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFD 158 (220)
T ss_dssp HEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred cEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEc
Confidence 65543222 111 1233332333 2445677899999997432 33444455543 2 899999999865
Q ss_pred ------------hhhc-CCeEEEEeCC
Q psy10472 154 ------------TVQN-ADLIVVLQAG 167 (181)
Q Consensus 154 ------------~~~~-~d~v~~l~~G 167 (181)
.+.. ||.+++|+..
T Consensus 159 ~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 159 SRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCCCccccCCCcceeecCcEEEEEEEe
Confidence 3444 9999999754
No 116
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.53 E-value=2e-15 Score=128.30 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=50.5
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~ 64 (181)
.+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 589999999999 999999999999999999999999999999999998876543
No 117
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.52 E-value=4.5e-15 Score=119.49 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=51.4
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCCc-----c-ccHH
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVLF-----A-TSVR 88 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l~-----~-~tv~ 88 (181)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ +|++++.... ..+...+||++|+|.+. + .|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 35579999999999999999999999 99999999999 9988765432 22222489999998542 4 488
Q ss_pred HHh
Q psy10472 89 ENI 91 (181)
Q Consensus 89 enl 91 (181)
+|+
T Consensus 238 e~l 240 (302)
T 2yv5_A 238 REV 240 (302)
T ss_dssp GGG
T ss_pred HHH
Confidence 888
No 118
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.52 E-value=1.8e-15 Score=114.20 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=54.1
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY 93 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~ 93 (181)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+..+...+....+. .++|+||++.+|+. ++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQE-GVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCB-TTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhc-CceEEeccHHHHHHHHhcCcEEe
Confidence 57788999999999999999999999999964 5888887766544332233 48999999887765 77666643
No 119
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.49 E-value=1.7e-14 Score=123.84 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=44.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472 118 EFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG 167 (181)
Q Consensus 118 ~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G 167 (181)
|+|+++||+.++..+.+.|+.+.+|.|||+|||+++.+..||++++|.++
T Consensus 424 DEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 424 DEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp CSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred eCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 44889999999999999998876689999999999988789999999654
No 120
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.48 E-value=3.2e-13 Score=111.08 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=46.8
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472 116 ISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177 (181)
Q Consensus 116 ~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~ 177 (181)
+.|+|+++||+..+..+++.+..+. .|+|++||. +. .||++++|++|+++. .++++
T Consensus 297 LLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--~~~~i~~l~~G~i~~-~g~~~ 352 (359)
T 2o5v_A 297 LLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--GAALTLRAQAGRFTP-VADEE 352 (359)
T ss_dssp EECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT--TCSEEEEEETTEEEE-CCCTT
T ss_pred EEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc--cCCEEEEEECCEEEe-cCCHH
Confidence 4456999999999999999998764 799999994 44 899999999999987 45443
No 121
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=2.9e-14 Score=119.48 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=70.5
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS 86 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t 86 (181)
.+.+++++||+| +|+||||||||||+++|+|+..|..|. +|..+...+ ..+...+++++|++.++. .|
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKK--TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-------CCEEEEEECC------CEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCcc--ceeeeeEEEEEecCCccccee
Confidence 356899999998 999999999999999999998866551 232221111 111224899999888775 59
Q ss_pred HHHHhhcCCCCCCH---HHH----HHHHHH-h------------ccc---cccccCCC-CCCCHHHHHHHHHHHHHhcCC
Q psy10472 87 VRENIRYGDSSVSD---EQI----EEAAKL-A------------NAH---GFISEFPS-GALDNESEKLVQAALESACKG 142 (181)
Q Consensus 87 v~enl~~~~~~~~~---~~~----~~~~~~-~------------~~~---~~~~~~P~-~~LD~~~~~~i~~~l~~~~~~ 142 (181)
+.||+.++...... ..+ ...++. + +.. -++.++|+ .+||+... ++++.+..+
T Consensus 92 v~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~ 167 (418)
T 2qag_C 92 IVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEK 167 (418)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTT
T ss_pred eeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhcc
Confidence 99998886432111 111 111111 0 011 24566798 69998764 333344457
Q ss_pred cEEEEEecCch
Q psy10472 143 RTVLMIAHRLS 153 (181)
Q Consensus 143 ~tii~vtHd~~ 153 (181)
.++|+|.|..+
T Consensus 168 v~iIlVinK~D 178 (418)
T 2qag_C 168 VNIIPLIAKAD 178 (418)
T ss_dssp SEEEEEEESTT
T ss_pred CcEEEEEEccc
Confidence 78888877554
No 122
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.47 E-value=7.9e-16 Score=125.74 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=63.0
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhccCcEEEEccCCCCcc
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLRGNVIGLINQEPVLFA 84 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~~i~~v~q~~~l~~ 84 (181)
+.+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++..... ...+. .+++++|++.+|.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~-~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT-RMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG-GSTTGGGCTTEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh-hheeeccCccccc
Confidence 358999999999999999999999999999999999999999999999988743221 12233 4899999988774
No 123
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.45 E-value=6.2e-13 Score=108.46 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=44.5
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
++.|+|+++||+..+..+.+.++.+. ++.|+|+||||.+....||++++|+
T Consensus 276 lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 276 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 56788999999999999999998864 5789999999977666699999985
No 124
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.44 E-value=1.3e-14 Score=116.98 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=44.2
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCCcc-----ccHH
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVLFA-----TSVR 88 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-----~tv~ 88 (181)
+++.+|++++|+||||||||||+++|+|+.+|..|+|.+ +|+.++... ...+.. ++|++|.|.+.. .|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~-~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTS-GGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEET-TEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcC-CEEEecCCCccccccccCCH-
Confidence 567789999999999999999999999999999999999 888765432 222222 799999997653 377
Q ss_pred HHhh
Q psy10472 89 ENIR 92 (181)
Q Consensus 89 enl~ 92 (181)
||+.
T Consensus 245 e~l~ 248 (307)
T 1t9h_A 245 EELG 248 (307)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 8883
No 125
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.43 E-value=4e-15 Score=120.03 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=63.0
Q ss_pred cccceeeEEe-------------------cCCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEE---CCEECCCCCh
Q psy10472 10 TILKDFNLRI-------------------PAGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITI---SGVDLKHLDG 65 (181)
Q Consensus 10 ~vl~~isl~i-------------------~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i---~g~~i~~~~~ 65 (181)
++++++++.+ ++|++++|+||||||||||+++|+|++. |++|+|.+ +|... +.
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~~ 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PN 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---CH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---cH
Confidence 5788888887 8999999999999999999999999988 99999999 88653 22
Q ss_pred hhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472 66 TWLRGNVIGLINQEPVLFAT-SVRENIRY 93 (181)
Q Consensus 66 ~~~r~~~i~~v~q~~~l~~~-tv~enl~~ 93 (181)
. .++ .++++ |...+++. ++.+|+.+
T Consensus 126 ~-~~~-~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 126 Q-VLK-ERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp H-HHH-HHTCT-TCTTSGGGBCHHHHHHH
T ss_pred H-HHH-hCCEe-ecCCCCCCccHHHHHHH
Confidence 2 233 36788 77766654 88888765
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.43 E-value=6.4e-15 Score=119.36 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=54.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC--------CCCcceEEECCEECCCCCh---------------hhhccCcEEEE---
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY--------DVSSGNITISGVDLKHLDG---------------TWLRGNVIGLI--- 76 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~--------~p~~G~i~i~g~~i~~~~~---------------~~~r~~~i~~v--- 76 (181)
++++|+|+|||||||||+.|+|+. .|+.|+|.++|..+...+. ..+++ .++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~-~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELED-ALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHH-HHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHH-HHHHHHhH
Confidence 589999999999999999999997 7899999999998865421 22333 36777
Q ss_pred ccCCCCc-cccHHHHhhcC
Q psy10472 77 NQEPVLF-ATSVRENIRYG 94 (181)
Q Consensus 77 ~q~~~l~-~~tv~enl~~~ 94 (181)
+|++.++ ..++.||..++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHHTSCCCSEEEEEEETTC
T ss_pred HhcCCCCCCEEEEeCCCCC
Confidence 6776653 45788877664
No 127
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.40 E-value=7e-15 Score=113.91 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=43.3
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-------hhhccCcEEEEccC
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-------TWLRGNVIGLINQE 79 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-------~~~r~~~i~~v~q~ 79 (181)
+|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++...++ ....+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 777887 8999999999999999999999999999999999988743321 11123459999985
No 128
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.39 E-value=1.8e-13 Score=107.26 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=83.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHh---cCCCCCcceEE--------ECCEECCCC-ChhhhccCcEEEEccCCC------
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLE---RFYDVSSGNIT--------ISGVDLKHL-DGTWLRGNVIGLINQEPV------ 81 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~---gl~~p~~G~i~--------i~g~~i~~~-~~~~~r~~~i~~v~q~~~------ 81 (181)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++... ....+++. ++++||.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 103 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAH-LDVRFVSQNGQLQVI 103 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHT-CCEEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHc-CCEEEecCCCCceEE
Confidence 789999999999999999999999 99999999999 899887432 33445554 899997542
Q ss_pred CccccHHHHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh--hcCC
Q psy10472 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV--QNAD 159 (181)
Q Consensus 82 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~--~~~d 159 (181)
++..++.+|+.. ..+..+...+ +..+.-++.+.+..+.+..+..+|+..++...+ ..+|
T Consensus 104 l~~~~v~~~i~~-------~~v~~~~s~~------------~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~~~ 164 (252)
T 4e22_A 104 LEGEDVSNEIRT-------ETVGNTASQA------------AAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPDAP 164 (252)
T ss_dssp ETTEECTTGGGS-------HHHHHHHHHH------------TTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTTCS
T ss_pred ECCeehhHHHHH-------HHHHHHHHHh------------cccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCCCC
Confidence 223366666531 2223332221 222444556666666666555677777777643 3366
Q ss_pred eEEEEe
Q psy10472 160 LIVVLQ 165 (181)
Q Consensus 160 ~v~~l~ 165 (181)
..++|.
T Consensus 165 ~~ifl~ 170 (252)
T 4e22_A 165 VKIFLD 170 (252)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666654
No 129
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.39 E-value=1.7e-13 Score=112.51 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=62.3
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEEC-CEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSSGNITIS-GVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR 88 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p~~G~i~i~-g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~ 88 (181)
++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.... . .+...+++++|++.+++. +++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----T-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCEEEECHHHH
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----c-eEEEEEEEECCCCEecCcccHH
Confidence 4556653 4799999999999999999999999999 999999987 65432 1 123358999999988865 888
Q ss_pred HHhhcCCCCCCHHH----HHHHHHHhcccccccc
Q psy10472 89 ENIRYGDSSVSDEQ----IEEAAKLANAHGFISE 118 (181)
Q Consensus 89 enl~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 118 (181)
++... ....+. +.++++.+++..+.+.
T Consensus 280 e~~l~---~l~~~e~~~~~~e~l~~~gl~~f~~~ 310 (358)
T 2rcn_A 280 EFGLW---HLEPEQITQGFVEFHDYLGHCKYRDC 310 (358)
T ss_dssp TCCCC---CCCHHHHHHTSGGGGGGTTCSSSTTC
T ss_pred Hhhhc---CCCHHHHHHHHHHHHHHcCCchhcCC
Confidence 86332 223332 2344555565555443
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.38 E-value=2.6e-14 Score=106.69 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=51.4
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY 93 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~ 93 (181)
.+++|++++|+||||||||||+++|+|. |..|.|.++|.++..... ....++|++|++. ...++.+|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~---~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK---HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC---SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh---cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 788999999866432110 1123567777543 23477887754
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=1.2e-12 Score=106.41 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=72.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc-CCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHHHhhcCCCCCCHH
Q psy10472 24 KVAIVGSSGNGKSTIVALLER-FYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRENIRYGDSSVSDE 101 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~ 101 (181)
.+.|.||||+|||||++++++ ++.|+.|.+.++|.++..... .+ ..+++++|.+.+. ..+- .+ .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~-----~~--~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RK-LELNVVSSPYHLEITPSD-----MG--NNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEEEECCC-----------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--cc-ceeeeecccceEEecHhh-----cC--CcchH
Confidence 389999999999999999999 899999999999977543221 12 3478888876432 1110 00 01111
Q ss_pred HHHHHHHHh-----------------ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472 102 QIEEAAKLA-----------------NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV 155 (181)
Q Consensus 102 ~~~~~~~~~-----------------~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~ 155 (181)
.+++.++.+ +..-++-|+|+. ||+..+..+.+.+.....++++|++||+++.+
T Consensus 108 ~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177 (354)
T ss_dssp HHHHHHHHHTTTTC------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred HHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 122222211 112345677888 99999999999998877789999999997643
No 132
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.36 E-value=2.6e-14 Score=111.34 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=51.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh---cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLE---RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY 93 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~---gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~ 93 (181)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. . .... .+++++|+..+++. ++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~--~--~~~~-~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS--T--EVGE-MAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT--C--HHHH-HHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC--C--hHHH-HHHHHHHcCCCCCHHHHHHHHHH
Confidence 47899999999999999999999 999999999988775421 1 1111 25566777776664 88888753
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.36 E-value=1.2e-13 Score=102.43 Aligned_cols=109 Identities=11% Similarity=0.138 Sum_probs=69.8
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh--c
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR--Y 93 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~--~ 93 (181)
+|++++|+.++|.||||||||||++++++.+.|..|.. +.|+. .....+.+. +
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-------------------~~~~~------~~~~~~~~~~~~ 86 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-------------------GYFFD------TKDLIFRLKHLM 86 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-------------------CCEEE------HHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-------------------EEEEE------HHHHHHHHHHHh
Confidence 46788899999999999999999999999987666521 11110 001111111 0
Q ss_pred CCCCCCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh-cCCcEEEEEecCch
Q psy10472 94 GDSSVSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA-CKGRTVLMIAHRLS 153 (181)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~ 153 (181)
...... .....+ ....-++-|+|+. ++|+..++.+.+++... .+++++|++||...
T Consensus 87 ~~~~~~--~~~~~~--~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 87 DEGKDT--KFLKTV--LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCCS--HHHHHH--HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCchHH--HHHHHh--cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 000111 111111 1334456677874 89999999999999765 46899999999764
No 134
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.34 E-value=4.2e-14 Score=109.14 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=23.4
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHh-cCCCC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE-RFYDV 48 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~-gl~~p 48 (181)
.+...++||++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34678999999999999999999999999999999 99844
No 135
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.34 E-value=9.5e-13 Score=104.33 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=73.7
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc---c---------
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA---T--------- 85 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~---~--------- 85 (181)
.+++|++++|+||||||||||++.+++... .|.+ +.|..... . ..+.|+..+..... .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~-~~v~~~~~e~~~~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------T-GPVIYLPAEDPPTAIHHRLHALGAHLS 95 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------C-CCEEEEESSSCHHHHHHHHHHHHTTSC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------C-ccEEEEECCCCHHHHHHHHHHHHhhcC
Confidence 378999999999999999999999998654 4544 23332110 1 12555544332100 0
Q ss_pred -----cHHHHhhcCCC------CCCHHHHHHHHHHh-ccccccccCCCC--CCCHHHH---HHHHHHHHHhc--CCcEEE
Q psy10472 86 -----SVRENIRYGDS------SVSDEQIEEAAKLA-NAHGFISEFPSG--ALDNESE---KLVQAALESAC--KGRTVL 146 (181)
Q Consensus 86 -----tv~enl~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~P~~--~LD~~~~---~~i~~~l~~~~--~~~tii 146 (181)
.+.+++.+... ..+....+.+...+ +..-++-|+|++ ++|+... ..++..|+.+. .|+|||
T Consensus 96 ~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 96 AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 11233332211 11223333332222 344466788999 8898544 66777777653 389999
Q ss_pred EEecCchhh
Q psy10472 147 MIAHRLSTV 155 (181)
Q Consensus 147 ~vtHd~~~~ 155 (181)
+++|+....
T Consensus 176 ~i~H~~~~~ 184 (279)
T 1nlf_A 176 FLHHASKGA 184 (279)
T ss_dssp EEEEC----
T ss_pred EEecCCCcc
Confidence 999998754
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.32 E-value=9.2e-14 Score=107.29 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=81.8
Q ss_pred ccccee-eEEecCCcEEEEECCCCCcHHHHHH-HHhcCCCCCcceEEECCEECCCCChhhh--ccCcEEEEccCCCCc-c
Q psy10472 10 TILKDF-NLRIPAGQKVAIVGSSGNGKSTIVA-LLERFYDVSSGNITISGVDLKHLDGTWL--RGNVIGLINQEPVLF-A 84 (181)
Q Consensus 10 ~vl~~i-sl~i~~Ge~~~liG~nGsGKSTLl~-~l~gl~~p~~G~i~i~g~~i~~~~~~~~--r~~~i~~v~q~~~l~-~ 84 (181)
+.|+.+ .--+++|++++|.||||||||||+. ++.+..++..+.++++... +...+ +...+++.+|+.... .
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~~~ 85 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEKGM 85 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHHTS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhCCc
Confidence 345555 4468999999999999999999955 4455555545556665532 22211 111245554432100 0
Q ss_pred ccHHH--HhhcC----------CCCCC----HHHHHHHHHHhccccccccCCCCCC--CHHHHHHHHHHHH-Hhc-CCcE
Q psy10472 85 TSVRE--NIRYG----------DSSVS----DEQIEEAAKLANAHGFISEFPSGAL--DNESEKLVQAALE-SAC-KGRT 144 (181)
Q Consensus 85 ~tv~e--nl~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~P~~~L--D~~~~~~i~~~l~-~~~-~~~t 144 (181)
.++.+ ...++ ....+ .+.+.++++..+...++-|.|+..+ |+.....++..+. ..+ .|+|
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 165 (247)
T 2dr3_A 86 FAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCT 165 (247)
T ss_dssp EEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCE
T ss_pred EEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCe
Confidence 01111 00000 00112 2233444444555556667776655 5544444444443 333 4899
Q ss_pred EEEEecCchh--------h-hcCCeEEEEeC
Q psy10472 145 VLMIAHRLST--------V-QNADLIVVLQA 166 (181)
Q Consensus 145 ii~vtHd~~~--------~-~~~d~v~~l~~ 166 (181)
+|+++|.... + ..||.|+.|+.
T Consensus 166 vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 166 SIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp EEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred EEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 9999998764 3 34899999964
No 137
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.31 E-value=6.9e-14 Score=103.86 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=43.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCC---hhhhccCcEE----EEccCCCCc
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLD---GTWLRGNVIG----LINQEPVLF 83 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~---~~~~r~~~i~----~v~q~~~l~ 83 (181)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++..++ ...+|.+.+| +++|++.+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 589999999999999999999999998 899999999876554 3345432366 889987766
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.30 E-value=1.6e-12 Score=94.27 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=62.7
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc--eEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG--NITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR 88 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G--~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~ 88 (181)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~---------------------~---- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL---------------------T---- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC---------------------C----
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH---------------------H----
Confidence 45555 8999999999999999999999999876 46 45554422110 0
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcE-EEEEecC
Q psy10472 89 ENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESAC-KGRT-VLMIAHR 151 (181)
Q Consensus 89 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~t-ii~vtHd 151 (181)
.+ + ....-++-|+|+. ++...++.+.+++.... +|++ +|++||.
T Consensus 79 ---~~-------------~--~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ---DA-------------A--FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ---GG-------------G--GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ---HH-------------H--hCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 00 0 1223345677876 66666888889887754 4777 8888884
No 139
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=1.3e-13 Score=103.99 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=32.9
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCcceEEE
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY-----DVSSGNITI 55 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~-----~p~~G~i~i 55 (181)
+++++ |++++|..++|+|+||||||||++.|+|.. .|+.|++.+
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 56777 889999999999999999999999999998 888887754
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=4.7e-12 Score=108.56 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=53.7
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~ 80 (181)
.+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|.+.|..-...+. ...++++.|..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~----~~~v~~~~r~~ 314 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH----ENWIAEVTRTG 314 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC----SSEEEEECBCC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC----CCeEEEEeecc
Confidence 46788999999999999999999999999999999999999999998865222221 12356666554
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.21 E-value=5.3e-13 Score=111.83 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=58.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC-C---hhhhccCcEEEEc---------
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL-D---GTWLRGNVIGLIN--------- 77 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~-~---~~~~r~~~i~~v~--------- 77 (181)
+|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|.+.+.++... + ...++. .+++.|
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~-~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP-RVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG-GGTBCHHHHHHHHGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc-ccCcCHHHHHHHHhc
Confidence 56666 4 378999999999999999999999999999999999988766321 1 111222 255655
Q ss_pred cCCCCc--c-----ccHHHHhhc
Q psy10472 78 QEPVLF--A-----TSVRENIRY 93 (181)
Q Consensus 78 q~~~l~--~-----~tv~enl~~ 93 (181)
|+|.++ . .|+.+++.+
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a 257 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQA 257 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHH
T ss_pred cCCCeEEEcCcCCHHHHHHHHHH
Confidence 888653 2 378888765
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.18 E-value=2.6e-13 Score=107.75 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=61.9
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-cH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-SV 87 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-tv 87 (181)
.+++++++++++| ++|+||||||||||+++|+|...+ |.|.++|.++.........+ .++++||.+ ..++. ++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~-~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESER-AVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHH-HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHH-HHHHHHHHHHhcCCCeEe
Confidence 4789999999999 999999999999999999999877 78999998775443333333 378888875 34443 67
Q ss_pred HHHhhcC
Q psy10472 88 RENIRYG 94 (181)
Q Consensus 88 ~enl~~~ 94 (181)
.|++.+.
T Consensus 109 ~Deid~~ 115 (274)
T 2x8a_A 109 FDEVDAL 115 (274)
T ss_dssp EETCTTT
T ss_pred eehhhhh
Confidence 7777653
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.18 E-value=6.4e-12 Score=95.43 Aligned_cols=41 Identities=29% Similarity=0.456 Sum_probs=34.3
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEE
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVD 59 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~ 59 (181)
.++|++++|+||||||||||+++|+|+++|. .|.|.++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 5789999999999999999999999999864 5555555543
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.17 E-value=1.2e-12 Score=98.80 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=50.1
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR 92 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~ 92 (181)
.++.++|++++|+||||||||||+++|++.+ |.+.+++.++.. ....++..+++++|++..++. ++.+++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 3567789999999999999999999999987 899999877642 111222236788998766653 6766664
No 145
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=1.3e-13 Score=114.62 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=88.2
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhc------------CCCCCcceEEECCEECCCCChhhhccCcE---EEEccCCCC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLER------------FYDVSSGNITISGVDLKHLDGTWLRGNVI---GLINQEPVL 82 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~g------------l~~p~~G~i~i~g~~i~~~~~~~~r~~~i---~~v~q~~~l 82 (181)
.++.|..++|+|+||||||||+++|+| ...|+.|.|.+.|..+..+......++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 56799999999874321110000001112 366677766
Q ss_pred ccc-cHHHHhhcCCCCCCHHHHHHHHHHhc-------c-----------------ccccccCCCCCCCHHHHHHHHHHHH
Q psy10472 83 FAT-SVRENIRYGDSSVSDEQIEEAAKLAN-------A-----------------HGFISEFPSGALDNESEKLVQAALE 137 (181)
Q Consensus 83 ~~~-tv~enl~~~~~~~~~~~~~~~~~~~~-------~-----------------~~~~~~~P~~~LD~~~~~~i~~~l~ 137 (181)
+.. +..+++. .. ....++.+. . .-.+-++|+..+|+...+..++.+.
T Consensus 96 ~~~~s~~e~L~-------~~-fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~ 167 (392)
T 1ni3_A 96 TKGASTGVGLG-------NA-FLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLR 167 (392)
T ss_dssp CCCCCSSSSSC-------HH-HHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-------HH-HHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHH
Confidence 643 4433330 00 000000000 0 0001123455666677777777777
Q ss_pred Hh-cC-CcEEEEEecCchhhhc-CCeEE-EEeCC-eEEe
Q psy10472 138 SA-CK-GRTVLMIAHRLSTVQN-ADLIV-VLQAG-QIVE 171 (181)
Q Consensus 138 ~~-~~-~~tii~vtHd~~~~~~-~d~v~-~l~~G-~i~~ 171 (181)
.. .. |.|++ +|+...+.. |+++. .|++| +++.
T Consensus 168 ~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 168 KITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp HTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee
Confidence 66 54 66653 999988865 99998 89999 7764
No 146
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.15 E-value=1.1e-12 Score=118.91 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=55.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCc
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQH 176 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~ 176 (181)
-++.|+||++||+...+.++++|+++. +|.|||+||||++.+..||+|++| ++|+++.. +++
T Consensus 487 lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~-G~~ 555 (916)
T 3pih_A 487 IYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQ-GTV 555 (916)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEE-ECH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEe-ech
Confidence 467899999999999999999999875 499999999999998779999999 89999873 443
No 147
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.07 E-value=2.9e-11 Score=98.00 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=63.6
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhc----cCcEEEE-ccCCCC
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLR----GNVIGLI-NQEPVL 82 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r----~~~i~~v-~q~~~l 82 (181)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.++..... ..+. +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 368999999999999999999999999999999999999999998877643221 1221 3458999 777666
Q ss_pred ccc-cHHHHhhc
Q psy10472 83 FAT-SVRENIRY 93 (181)
Q Consensus 83 ~~~-tv~enl~~ 93 (181)
.+. ++.+++..
T Consensus 175 ~p~~~~~~~l~~ 186 (320)
T 1zu4_A 175 DPASVVFDAIKK 186 (320)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 554 67777653
No 148
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.07 E-value=5.2e-11 Score=105.09 Aligned_cols=133 Identities=16% Similarity=0.095 Sum_probs=92.0
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY 93 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~ 93 (181)
+++++++..++|+|++|+|||||++.|++...+ ..|+| ++|..+.+....+.++ .+++.+|...++..++..|+.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~-giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLH-RTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHT-TSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhc-CCeEEecceEEeeCCEEEEEEe
Confidence 467889999999999999999999999987665 67888 6787776666555444 4888888777665566666643
Q ss_pred CCCC-CCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchh
Q psy10472 94 GDSS-VSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLST 154 (181)
Q Consensus 94 ~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~ 154 (181)
.... .-.......++.++..-++.+ |+.++++.+++.+. .+.. .+.++|++.|.++.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~-~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWT-VAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHH-HHHH--TTCCEEEEEECGGG
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHH-HHHH--ccCCEEEEecCCch
Confidence 2111 112445666777776666666 78899988774433 3322 37888899998765
No 149
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.06 E-value=3.2e-11 Score=90.03 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=26.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSG 51 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G 51 (181)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 578999999999999999999999984333
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.05 E-value=4e-10 Score=90.33 Aligned_cols=128 Identities=13% Similarity=0.201 Sum_probs=75.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc-----
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY----- 93 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~----- 93 (181)
.+|++++++|||||||||+++.|++.+.+++| +|.+-+.+... .+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r----------------------~~a~eqL~~~~~~~ 160 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR----------------------IAAVEQLKTYAELL 160 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS----------------------TTHHHHHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc----------------------chHHHHHHHHHHhc
Confidence 47999999999999999999999999988778 45444333221 122222211
Q ss_pred CC---CCCCHHHHHHHHHHhcc-ccccccCCCCCCCHHHHHHHHHHHHHhc---C-CcEEEE-EecCchhhhc-CCeEEE
Q psy10472 94 GD---SSVSDEQIEEAAKLANA-HGFISEFPSGALDNESEKLVQAALESAC---K-GRTVLM-IAHRLSTVQN-ADLIVV 163 (181)
Q Consensus 94 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~P~~~LD~~~~~~i~~~l~~~~---~-~~tii~-vtHd~~~~~~-~d~v~~ 163 (181)
+. .......+..++..+.- +-++-| |+++|+.....+.++.+... . +.++++ +||+.+.+.. ++++..
T Consensus 161 gl~~~~~~~~~~l~~al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~ 238 (296)
T 2px0_A 161 QAPLEVCYTKEEFQQAKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSS 238 (296)
T ss_dssp TCCCCBCSSHHHHHHHHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSS
T ss_pred CCCeEecCCHHHHHHHHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhc
Confidence 00 01123334444443322 223444 77888876666665554433 2 334444 4999877755 776655
Q ss_pred EeCCeEEe
Q psy10472 164 LQAGQIVE 171 (181)
Q Consensus 164 l~~G~i~~ 171 (181)
+..+.++.
T Consensus 239 l~~~giVl 246 (296)
T 2px0_A 239 VPVNQYIF 246 (296)
T ss_dssp SCCCEEEE
T ss_pred CCCCEEEE
Confidence 66666654
No 151
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.00 E-value=1.6e-12 Score=105.81 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=60.3
Q ss_pred ccccceeeEEecCC-------cEEEEECCCCCcHHHHHHHHhcCC----CCCcceEEECCEECCCCChhhhccCcEEEEc
Q psy10472 9 KTILKDFNLRIPAG-------QKVAIVGSSGNGKSTIVALLERFY----DVSSGNITISGVDLKHLDGTWLRGNVIGLIN 77 (181)
Q Consensus 9 ~~vl~~isl~i~~G-------e~~~liG~nGsGKSTLl~~l~gl~----~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~ 77 (181)
..+++++++.+++| +.++|.||||+|||||+++|++.+ .|.+|.+..++.++.... ...++..|.+++
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~-~~~~~~~v~~iD 109 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL-TSLERGDVLFID 109 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH-HHCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH-HHccCCCEEEEc
Confidence 35788889888876 899999999999999999999998 677787766654432110 112233589999
Q ss_pred cCCCCccccHHHHhh
Q psy10472 78 QEPVLFATSVRENIR 92 (181)
Q Consensus 78 q~~~l~~~tv~enl~ 92 (181)
|...+++ ++.|++.
T Consensus 110 E~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 110 EIHRLNK-AVEELLY 123 (334)
T ss_dssp TGGGCCH-HHHHHHH
T ss_pred chhhcCH-HHHHHHH
Confidence 9877665 6777763
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.00 E-value=2.5e-10 Score=84.43 Aligned_cols=40 Identities=30% Similarity=0.332 Sum_probs=36.6
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI 53 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i 53 (181)
+++++++.+| +++|+||||||||||+++|.+++.+..|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 7899999999 999999999999999999999988877654
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.98 E-value=2.7e-10 Score=85.56 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=30.1
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG 51 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G 51 (181)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977665
No 154
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.95 E-value=8.6e-11 Score=88.96 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=47.1
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-------------VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL 82 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l 82 (181)
|+..-+|++++|+||||||||||++.|++.++ |..|+ ++|.++.-.+...+++. +.|+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~----i~~~~fl 86 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRN----ISANEFL 86 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHH----HHTTCEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhh----hhhhhhh
Confidence 45556899999999999999999999999876 56676 57766554555544432 2344444
Q ss_pred ccccHHHH
Q psy10472 83 FATSVREN 90 (181)
Q Consensus 83 ~~~tv~en 90 (181)
+..++.+|
T Consensus 87 e~~~~~~n 94 (197)
T 3ney_A 87 EFGSYQGN 94 (197)
T ss_dssp EEEEETTE
T ss_pred hhhhhhce
Confidence 55566666
No 155
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.92 E-value=2.5e-10 Score=87.13 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=43.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC---CCCcceEEE--------CCEECCC-CChhhhccCcEEEEccCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY---DVSSGNITI--------SGVDLKH-LDGTWLRGNVIGLINQEP 80 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~---~p~~G~i~i--------~g~~i~~-~~~~~~r~~~i~~v~q~~ 80 (181)
+.+++|+|||||||||+.++|++.+ .++.|.+.. .|.++.. .....++++ +++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASH-LDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHT-CCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHh-Cceeeecc
Confidence 5689999999999999999999766 788898877 6665432 112234544 88998865
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.92 E-value=5.1e-12 Score=99.97 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=56.3
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc-cH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT-SV 87 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~-tv 87 (181)
.+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++ .++++||... .++. ++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA-RVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHH-HHHHHHHHHHTSCSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHH-HHHHHHHHHHhcCCcEEe
Confidence 4678899999999 99999999999999999999885 789999886653322222222 2667787753 3333 66
Q ss_pred HHHh
Q psy10472 88 RENI 91 (181)
Q Consensus 88 ~enl 91 (181)
.|++
T Consensus 138 iDei 141 (278)
T 1iy2_A 138 IDEI 141 (278)
T ss_dssp EETH
T ss_pred hhhh
Confidence 6666
No 157
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.92 E-value=1.6e-09 Score=86.78 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=73.9
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR 92 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~ 92 (181)
++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.+.......+ | +....-..++.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~----------q---l~~~~~~~~l~ 155 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE----------Q---LRLLGEKVGVP 155 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH----------H---HHHHHHHHTCC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH----------H---HHHhcccCCeE
Confidence 577887 89999999999999999999999999999999999887654311100 0 00000011221
Q ss_pred cC--CCCCCHHHH-HHHHHHh---cccc-ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q psy10472 93 YG--DSSVSDEQI-EEAAKLA---NAHG-FISEFPSGALDNESEKLVQAALESACKGRTVLMIA 149 (181)
Q Consensus 93 ~~--~~~~~~~~~-~~~~~~~---~~~~-~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vt 149 (181)
+. ........+ ..+++.+ +.+- +++..|+.++|......+.++.+......+++++.
T Consensus 156 ~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 11 011122222 2333332 2222 34555699999988888877776655555555444
No 158
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.91 E-value=1.1e-10 Score=87.94 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=42.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE--EECCEECC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI--TISGVDLK 61 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i--~i~g~~i~ 61 (181)
..+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4556666678999999999999999999999999987 67888 88886653
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.90 E-value=1.3e-09 Score=89.33 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=30.5
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISG 57 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g 57 (181)
-+++|+++.|.||+|||||||+..++.......|.+ +++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 367999999999999999999888876544444444 4544
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.90 E-value=8.1e-12 Score=97.37 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=55.4
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc-cH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT-SV 87 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~-tv 87 (181)
.+++++++++++| ++|+||||||||||+++|++... .|.+.+++.++........++ .++++||... .++. ++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA-RVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHH-HHHHHHHHHTTSSSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHH-HHHHHHHHHHhcCCeEEE
Confidence 4688899999999 99999999999999999999875 788999886653222112222 2667777643 3333 56
Q ss_pred HHHh
Q psy10472 88 RENI 91 (181)
Q Consensus 88 ~enl 91 (181)
.|++
T Consensus 114 ~Dei 117 (254)
T 1ixz_A 114 IDEI 117 (254)
T ss_dssp EETH
T ss_pred ehhh
Confidence 6666
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.88 E-value=5.9e-10 Score=82.69 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEE
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITI 55 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i 55 (181)
+|++++|+||||||||||+++|++++++ ..|.|.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999874 4565543
No 162
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=1.3e-09 Score=82.01 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=24.7
Q ss_pred cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
...+++|+||++++|++++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999765
No 163
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.84 E-value=8.1e-09 Score=74.63 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=48.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE--eCCe
Q psy10472 112 AHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL--QAGQ 168 (181)
Q Consensus 112 ~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l--~~G~ 168 (181)
..-++.|+||++||+.++..+.+.+..+. +|.|+|+||||++....||++++| ++|.
T Consensus 82 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 82 ISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTE
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCe
Confidence 44567899999999999999999998864 489999999999655569999999 4553
No 164
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.81 E-value=1.9e-09 Score=90.20 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=33.1
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
-++++|+++.|+.++|+|+|||||||||++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 46899999999999999999999999999999984
No 165
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.80 E-value=1.3e-09 Score=83.84 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=47.7
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC------Chhh---hccCcEEEEccCCCCc
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL------DGTW---LRGNVIGLINQEPVLF 83 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~------~~~~---~r~~~i~~v~q~~~l~ 83 (181)
.+-+.+.++|++++|.|+||||||||+++|+++ .|+|.+.+++.... .... ...+.++++||.+.++
T Consensus 11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 334456689999999999999999999999998 78899988764321 1111 0112367888876544
Q ss_pred c
Q psy10472 84 A 84 (181)
Q Consensus 84 ~ 84 (181)
.
T Consensus 87 ~ 87 (230)
T 2vp4_A 87 T 87 (230)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.78 E-value=1.4e-08 Score=92.26 Aligned_cols=58 Identities=24% Similarity=0.428 Sum_probs=52.1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM 172 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~ 172 (181)
++.|+||++||+...+.++++|++++ .|.|||+|+||++++..||+|++| ++|+++..
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~ 592 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAA 592 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEE
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEe
Confidence 45678999999999999999999875 599999999999998779999999 78999874
No 167
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.77 E-value=9.9e-10 Score=82.86 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~ 61 (181)
..++|++++|+|+||||||||+++|++++++..|.|.+.+.+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 36789999999999999999999999999888999888765543
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.77 E-value=1.2e-08 Score=83.67 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=47.3
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHH
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVREN 90 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~en 90 (181)
+++|+++.|.||+|||||||+..++....+..|.+ ++++.... ... +.+++|+.+|+..+.. .++.+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~~--ra~rlgv~~~~l~i~~~~~~e~~ 127 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DPV--YAKNLGVDLKSLLISQPDHGEQA 127 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHH--HHHHHTCCGGGCEEECCSSHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--chH--HHHHcCCchhhhhhhhccCHHHH
Confidence 77999999999999999999999999888777865 66664322 222 2223677777654433 244443
No 169
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.75 E-value=6.2e-09 Score=77.51 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=32.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------CcceEEECCEEC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDV-----------SSGNITISGVDL 60 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p-----------~~G~i~i~g~~i 60 (181)
.++|+|+||||||||++.++|...| ..|+|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999998765 578999999764
No 170
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.73 E-value=5.9e-09 Score=79.01 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=27.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
No 171
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.72 E-value=1.4e-09 Score=88.10 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=37.2
Q ss_pred cccceeeEEecCCc------EEEEECCCCCcHHHHHHHHhcCCC--CCcceEEE
Q psy10472 10 TILKDFNLRIPAGQ------KVAIVGSSGNGKSTIVALLERFYD--VSSGNITI 55 (181)
Q Consensus 10 ~vl~~isl~i~~Ge------~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i 55 (181)
+.|++++..+..++ +++|+||||||||||+++|.+++. |++|.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 45667777777766 999999999999999999999987 45666444
No 172
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.71 E-value=2.3e-09 Score=86.29 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=43.3
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~ 62 (181)
.++++.++|++++|+|||||||||+++.|++++.+..|+|.+.+.+...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3566678899999999999999999999999999999999998877643
No 173
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.71 E-value=7.7e-09 Score=82.62 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=46.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG 94 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~ 94 (181)
+++.+++|+||||||||||.+.|.+++.+. | .. + +.+.+|+|+..+++.+.++|+.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g--------------~~-~-~~~~iv~~D~f~~~~~~~~~l~~~ 86 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y--------------GG-E-KSIGYASIDDFYLTHEDQLKLNEQ 86 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H--------------GG-G-SCEEEEEGGGGBCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C--------------CC-C-ceEEEeccccccCChHHHHHHhcc
Confidence 468899999999999999999999998763 2 01 2 225666999999988999998653
No 174
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.70 E-value=3.5e-08 Score=88.91 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=51.9
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM 172 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~ 172 (181)
++.|+||++||+...+.++++++.+. .|.|||+|+||++.+..||+|++| ++|+++..
T Consensus 403 lILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 403 YVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred EEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 46788999999999999999998875 599999999999988779999999 78999874
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.70 E-value=1.1e-09 Score=85.72 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=35.7
Q ss_pred cccccceeeEEecC---CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 8 LKTILKDFNLRIPA---GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 8 ~~~vl~~isl~i~~---Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
..++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35699999999999 9999999999999999999999854
No 176
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.69 E-value=3.9e-09 Score=77.41 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~ 61 (181)
.+|++++|+|||||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88889886654
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.69 E-value=3.8e-09 Score=91.28 Aligned_cols=43 Identities=33% Similarity=0.353 Sum_probs=38.5
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEE-ECCEEC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NIT-ISGVDL 60 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~-i~g~~i 60 (181)
.+++|++++|+|+||||||||+++|++.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 774 888654
No 178
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.68 E-value=2.3e-08 Score=90.99 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=51.7
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472 115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM 172 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~ 172 (181)
++.|+||++||+...+.++++|+.++ .|.|||+|+||++++..||+|++| ++|+++..
T Consensus 545 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~ 609 (993)
T 2ygr_A 545 YVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHS 609 (993)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEE
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEe
Confidence 35678999999999999999998875 599999999999988779999999 68888873
No 179
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.68 E-value=2.8e-09 Score=88.16 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=39.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i 55 (181)
..+++++++.+++|++++|+||||||||||+++|+|.. +|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 45789999999999999999999999999999999963 677654
No 180
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.64 E-value=5.6e-09 Score=91.13 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=53.1
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-ceEEECCEECCCCChhhhccCcEEEEccC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-GNITISGVDLKHLDGTWLRGNVIGLINQE 79 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~ 79 (181)
..+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+++....... ..++++|+.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~------p~i~~~p~g 112 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM------PRIKTVPAC 112 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS------CEEEEEETT
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC------CcEEEEecc
Confidence 457899999999999999999999999999999999999887 78888776543221 236777654
No 181
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.62 E-value=2.2e-08 Score=75.47 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=28.1
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
-++++|.+++|+|++|||||||++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578899999999999999999999999864
No 182
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.60 E-value=2.4e-08 Score=74.57 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=31.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----CC------cceEEECCEEC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD-----VS------SGNITISGVDL 60 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~-----p~------~G~i~i~g~~i 60 (181)
.++|+|+||||||||++.++|... |+ .|+|.++|+++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999853 43 57899999764
No 183
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.59 E-value=2.8e-08 Score=83.27 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=42.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 117 SEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 117 ~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
.|+|+++||+..+..+.+.+.... ++.++|++||+...+..||+++.+.
T Consensus 361 lDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 361 LDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred eCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 345999999999999999998875 4789999999987777799999986
No 184
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.57 E-value=4.4e-08 Score=82.70 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=39.4
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCE
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGV 58 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~ 58 (181)
.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 57777767999999999999999999999999988766445 5666543
No 185
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.52 E-value=1.2e-08 Score=87.96 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=41.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV 58 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~ 58 (181)
++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 567777777 89999999999999999999999999999999988774
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.51 E-value=8.2e-09 Score=84.11 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=45.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL 60 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i 60 (181)
..+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 3577888999999999999999999999999999999988888887766554
No 187
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.51 E-value=4e-08 Score=71.63 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=27.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
.|++++|+||||||||||+++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4678999999999999999999998754 55554
No 188
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.48 E-value=1.2e-07 Score=79.65 Aligned_cols=38 Identities=32% Similarity=0.342 Sum_probs=33.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CCcceEEECCEECC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD------------VSSGNITISGVDLK 61 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~------------p~~G~i~i~g~~i~ 61 (181)
.++|+|+||||||||++.|+|... |..|.+.++|+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~ 231 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 231 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEE
Confidence 799999999999999999999864 67899999998653
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.45 E-value=8.7e-08 Score=73.84 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.8
Q ss_pred ccceeeEEec---CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC
Q psy10472 11 ILKDFNLRIP---AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56 (181)
Q Consensus 11 vl~~isl~i~---~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~ 56 (181)
-|+++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3778888887 8999999999999999999999999887 6666543
No 190
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.44 E-value=1.3e-07 Score=68.15 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=26.8
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
+.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 35567777765 999999999999999999973
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.44 E-value=4.7e-08 Score=71.95 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=32.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc--eEEECCEEC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSG--NITISGVDL 60 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G--~i~i~g~~i 60 (181)
.+|++++|+|++||||||+.++|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46899999999999999999999998766 56 666666443
No 192
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.43 E-value=1.7e-08 Score=86.33 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=55.6
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc-cH
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT-SV 87 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~-tv 87 (181)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++.........+ .+..+||... ..+. .+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~-~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA-RVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHH-HHHHHTTTSSSSSSCEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHH-HHHHHHHHHHhcCCCEEE
Confidence 4678889999998 99999999999999999999874 788999987765432222222 2566777653 2333 55
Q ss_pred HHHh
Q psy10472 88 RENI 91 (181)
Q Consensus 88 ~enl 91 (181)
.|++
T Consensus 129 IDEI 132 (499)
T 2dhr_A 129 IDEI 132 (499)
T ss_dssp EECG
T ss_pred EehH
Confidence 5666
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.42 E-value=4.9e-08 Score=79.82 Aligned_cols=41 Identities=24% Similarity=0.487 Sum_probs=35.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL 60 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i 60 (181)
+++.+++|+|++|||||||++.|+|.+.+..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 34789999999999999999999999988888887766543
No 194
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.39 E-value=6.7e-07 Score=66.12 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=47.7
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE--eCCe
Q psy10472 114 GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL--QAGQ 168 (181)
Q Consensus 114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l--~~G~ 168 (181)
-++.|+|+++||+.++..+.++++.+.++.++|+|||+......||+++.+ .+|.
T Consensus 89 ~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 89 FYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGV 145 (173)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCE
Confidence 456899999999999999999999887778999999998887779999865 4664
No 195
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.35 E-value=7.3e-08 Score=72.94 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=37.6
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc--eEEECCEE
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG--NITISGVD 59 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G--~i~i~g~~ 59 (181)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 44678999999999999999999999999988888 88887644
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.29 E-value=1.5e-07 Score=78.81 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=42.5
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~ 62 (181)
++++|+ ++++++++|+|||||||++..|++.+.+..|+|.+.+.+...
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 467777 899999999999999999999999999999999998876543
No 197
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.26 E-value=3.3e-07 Score=74.90 Aligned_cols=45 Identities=27% Similarity=0.424 Sum_probs=34.5
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc--CCCCCcceEEECC
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER--FYDVSSGNITISG 57 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g--l~~p~~G~i~i~g 57 (181)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.+....
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 57899999998 999999999999999999999 5677777665443
No 198
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.25 E-value=8.4e-07 Score=65.69 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=27.2
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC----CC----CCcceEEECCE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF----YD----VSSGNITISGV 58 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl----~~----p~~G~i~i~g~ 58 (181)
..++++++++.++. .++++|++|+|||||++.+.+- +. ++.+.+.++|.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 34788999988877 7899999999999999999972 22 23455666654
No 199
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.25 E-value=8.9e-07 Score=64.58 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++|..++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999865
No 200
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.24 E-value=6.6e-07 Score=67.59 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=25.9
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE 43 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (181)
+.+.++++.+| +++|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34566777765 99999999999999999885
No 201
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.21 E-value=1.1e-06 Score=72.13 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCcE-EEEECCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEEC
Q psy10472 21 AGQK-VAIVGSSGNGKSTIVALLERFYD-----------VSSGNITISGVDL 60 (181)
Q Consensus 21 ~Ge~-~~liG~nGsGKSTLl~~l~gl~~-----------p~~G~i~i~g~~i 60 (181)
.|-. ++|+|++|||||||++.|+|... |..|.|.++|.++
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 3444 99999999999999999999876 6778999988654
No 202
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.20 E-value=7.1e-07 Score=66.91 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
+++|+|||||||||+.++|+++ |...+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 5555544
No 203
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=1.4e-07 Score=75.49 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=42.0
Q ss_pred ce-eeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472 13 KD-FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61 (181)
Q Consensus 13 ~~-isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~ 61 (181)
++ ++++.+ |++++++|++|+||||++..|++.+.+..++|.+.+.+..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35 777766 9999999999999999999999999988899998776654
No 204
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.18 E-value=4.1e-07 Score=67.87 Aligned_cols=50 Identities=26% Similarity=0.465 Sum_probs=38.5
Q ss_pred ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--------CCCCcceEEECCEE
Q psy10472 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--------YDVSSGNITISGVD 59 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--------~~p~~G~i~i~g~~ 59 (181)
..+++++|+..++. .++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 46788999888877 5799999999999999999872 22345666666643
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.17 E-value=5.7e-07 Score=66.43 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=33.2
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISG 57 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g 57 (181)
...+|.+++|+|++||||||+.+.|+..+.+..+.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999987777766 4444
No 206
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.16 E-value=3.6e-06 Score=69.10 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=44.1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472 115 FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165 (181)
Q Consensus 115 ~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~ 165 (181)
++.|+|+++||+..+..+.+.+..+.++.+||+|||+++....||++++|+
T Consensus 309 lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 309 IILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 445779999999999999999988765679999999998655699999997
No 207
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.15 E-value=1e-06 Score=65.21 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=26.6
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.14 E-value=9.7e-07 Score=66.31 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=26.5
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999998764
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.10 E-value=2.6e-06 Score=72.39 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=27.6
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++++.++.| +.|.||+|+|||||++++++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 345566666766 8899999999999999999853
No 210
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.10 E-value=4e-06 Score=60.40 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.08 E-value=1.9e-06 Score=71.46 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=33.6
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcC-----------CCCCcceEEECC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERF-----------YDVSSGNITISG 57 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl-----------~~p~~G~i~i~g 57 (181)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4677889999999999999999999998 678888887765
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.07 E-value=2.6e-06 Score=62.29 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 213
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.06 E-value=2.9e-07 Score=75.36 Aligned_cols=38 Identities=37% Similarity=0.524 Sum_probs=34.4
Q ss_pred ccccceeeEEecCCcE--EEEECCCCCcHHHHHHHHhcCC
Q psy10472 9 KTILKDFNLRIPAGQK--VAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~ 46 (181)
..+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578889999999999 9999999999999999999864
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.05 E-value=1.8e-06 Score=64.50 Aligned_cols=22 Identities=27% Similarity=0.678 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 215
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=1.3e-07 Score=76.51 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=39.9
Q ss_pred ccccceeeEEecCCcE--EEEECCCCCcHHHHHHHHhcCCCCCcceEEEC
Q psy10472 9 KTILKDFNLRIPAGQK--VAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56 (181)
Q Consensus 9 ~~vl~~isl~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~ 56 (181)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 3477888888999998 99999999999999999999887766554333
No 216
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.01 E-value=2.1e-06 Score=63.50 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=29.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEE
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVD 59 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~ 59 (181)
.+++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999876543 4677776543
No 217
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.00 E-value=2e-05 Score=63.97 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=25.7
Q ss_pred CCc--EEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472 21 AGQ--KVAIVGSSGNGKSTIVALLERFYDVS 49 (181)
Q Consensus 21 ~Ge--~~~liG~nGsGKSTLl~~l~gl~~p~ 49 (181)
.+. .+.|.||+|+|||||++.+++...+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 456 89999999999999999999987665
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.98 E-value=1.8e-06 Score=64.53 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=27.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL 60 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i 60 (181)
..+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4589999999999999999998865 4556655443
No 219
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.97 E-value=3.9e-06 Score=61.58 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
.++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999997544
No 220
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.97 E-value=4.4e-06 Score=71.46 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=41.9
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhc--CCCCCcceEEECCEECCC
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLER--FYDVSSGNITISGVDLKH 62 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g--l~~p~~G~i~i~g~~i~~ 62 (181)
+.+++++.++..+.|.|++||||||++++|.. ++.++.|++.+.+.+...
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 35789999999999999999999999999876 667777888877766543
No 221
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.95 E-value=2.3e-06 Score=66.56 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=36.1
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL 60 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i 60 (181)
+.+.. ....+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 44444 567788999999999999999999998764 35677787554
No 222
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.94 E-value=8e-06 Score=66.66 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=60.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc--cccHHHHhhcCCCCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF--ATSVRENIRYGDSSV 98 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~--~~tv~enl~~~~~~~ 98 (181)
..-.++++|++|+|||||++.++|.. +.. .+.+..... ..++.+.++...+ -.|..- ........
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~-----~~~~~~t~~------~~~~~~~~~~~~~~l~Dt~G~-~~~~~~~~ 232 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEI-----ASYPFTTRG------INVGQFEDGYFRYQIIDTPGL-LDRPISER 232 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEE-----ECCTTCSSC------EEEEEEEETTEEEEEEECTTT-SSSCSTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-Ccc-----CCCCCeeec------eeEEEEEecCceEEEEeCCCc-cccchhhh
Confidence 44589999999999999999999875 211 111111110 0133333322100 111100 00110111
Q ss_pred CHHHHHHHHHH---hcccccccc-CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEe--cCch
Q psy10472 99 SDEQIEEAAKL---ANAHGFISE-FPSGALDNESEKLVQAALESACKGRTVLMIA--HRLS 153 (181)
Q Consensus 99 ~~~~~~~~~~~---~~~~~~~~~-~P~~~LD~~~~~~i~~~l~~~~~~~tii~vt--Hd~~ 153 (181)
..-+....... ....-++.+ .|..++|......++..+.....+..+|+|. ||+.
T Consensus 233 ~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 233 NEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp CHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 11111111111 111223333 5777889988777777776644478888888 8874
No 223
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.94 E-value=5e-06 Score=68.26 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=27.5
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE 43 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (181)
+++..+++.+| +++|+|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888876 99999999999999999986
No 224
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.92 E-value=3.2e-05 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=30.2
Q ss_pred eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS 50 (181)
Q Consensus 16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~ 50 (181)
.+++.+|++++|+|||||||||||++|+++..|.+
T Consensus 20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 20 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 36788899999999999999999999999887754
No 225
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.92 E-value=3e-06 Score=70.09 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=31.5
Q ss_pred eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=4.4e-06 Score=64.74 Aligned_cols=44 Identities=34% Similarity=0.556 Sum_probs=29.0
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~ 59 (181)
++++++.++.| +.|.||+|+|||||+++|++..... .+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 44445555554 8999999999999999999876422 35565543
No 227
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.91 E-value=3.2e-06 Score=67.54 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4489999999999999999999973
No 228
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.90 E-value=3.6e-06 Score=69.02 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=27.5
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI 53 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i 53 (181)
.++++++|+| +|+|++|+|||||++.|.+...+..+.+
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 4677777766 9999999999999999988765554443
No 229
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.88 E-value=6e-06 Score=60.59 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.85 E-value=2.8e-06 Score=65.67 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=25.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHh---cCCCCCcceE
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLE---RFYDVSSGNI 53 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~---gl~~p~~G~i 53 (181)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3489999999999999999998 5545555655
No 231
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.83 E-value=1e-05 Score=62.07 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.5
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
+-.+|.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999999986
No 232
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.83 E-value=1.1e-05 Score=58.71 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
No 233
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.82 E-value=1e-05 Score=58.30 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 234
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.79 E-value=1.6e-05 Score=60.89 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVSSG 51 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G 51 (181)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998776655
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.76 E-value=8.7e-06 Score=73.29 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=34.1
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL 60 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i 60 (181)
|.+++|+.++|+||||||||||+++|++.+.+. .+.+++.++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l 274 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEI 274 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHh
Confidence 468899999999999999999999999987543 355665443
No 236
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.75 E-value=1.5e-05 Score=59.06 Aligned_cols=22 Identities=50% Similarity=0.693 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
No 237
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.75 E-value=3.9e-05 Score=56.28 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=26.9
Q ss_pred EEEEECCCCCcHHHHHHHHh-cC----CCCCcc----eEEECCEE
Q psy10472 24 KVAIVGSSGNGKSTIVALLE-RF----YDVSSG----NITISGVD 59 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~-gl----~~p~~G----~i~i~g~~ 59 (181)
.++|+|++|+|||||++.+. +. +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 58999999999999997655 43 456666 56666643
No 238
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.75 E-value=1.8e-05 Score=58.02 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997643
No 239
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.74 E-value=7.4e-06 Score=68.76 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=36.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~ 61 (181)
++.+++++||+||||||++..|++.+.+..++|.+-+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999999988889988666643
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.72 E-value=4e-06 Score=62.88 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYDVS 49 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~p~ 49 (181)
+++|.|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999877543
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.72 E-value=1.7e-05 Score=59.22 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+.|+||||||||||++.|..-.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987543
No 242
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.72 E-value=1.2e-05 Score=66.15 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=32.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
.+..++|+||+|||||||++.+++...+..+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678999999999999999999988878788887753
No 243
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.71 E-value=2.2e-05 Score=62.25 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=29.6
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
-..+.++.|.|||||||||+.+.|+.-++ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34578999999999999999999987543 35677765
No 244
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.70 E-value=1.8e-05 Score=58.16 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+.+.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998643
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.70 E-value=2e-05 Score=56.55 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy10472 24 KVAIVGSSGNGKSTIVALL 42 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l 42 (181)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 246
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.69 E-value=2.2e-05 Score=59.22 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999997
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.68 E-value=2e-05 Score=58.38 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=25.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
..+++|+|++||||||+.+.|+.. |...++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6556654
No 248
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.67 E-value=3.9e-05 Score=62.97 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=30.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc-----------CCCCCcceEEECC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLER-----------FYDVSSGNITISG 57 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~g-----------l~~p~~G~i~i~g 57 (181)
|-.++|+|.+|+|||||++.|++ -..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3457778887765
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.65 E-value=2.3e-05 Score=60.97 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|+||+|||||||.+.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998753
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.64 E-value=3.1e-05 Score=56.73 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+..++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999997543
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.63 E-value=3.6e-05 Score=57.10 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 252
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.62 E-value=2.8e-05 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
..+.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999843
No 253
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.62 E-value=2.9e-05 Score=56.76 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC----CCCcc
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY----DVSSG 51 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~----~p~~G 51 (181)
-.++|+|++|+|||||++.+.+-. .|+.|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 368999999999999999999863 34555
No 254
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.61 E-value=3.7e-05 Score=61.16 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=31.5
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
+.+.++..+.|.||+|+|||||++++++... .+.+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 3467889999999999999999999998763 44555554
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.60 E-value=3.5e-05 Score=55.87 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q psy10472 23 QKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~g 44 (181)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999987
No 256
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.59 E-value=3.4e-05 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 257
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.58 E-value=4.2e-05 Score=56.91 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999875543
No 258
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.56 E-value=4.4e-05 Score=56.22 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998543
No 259
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.56 E-value=4.4e-05 Score=56.97 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
..|.+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999854
No 260
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.53 E-value=5e-05 Score=56.70 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.5
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|-+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
No 261
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.53 E-value=3e-05 Score=56.95 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999987653
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.52 E-value=4.7e-05 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 263
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.51 E-value=4e-05 Score=60.55 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNI 53 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i 53 (181)
..+.|.||+|+|||||.++|++...+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5899999999999999999999987776644
No 264
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.51 E-value=4.6e-05 Score=59.58 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999753
No 265
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=6.1e-05 Score=55.20 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 266
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.47 E-value=9.6e-05 Score=59.43 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=34.7
Q ss_pred cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc----CCCCCcceEEE
Q psy10472 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER----FYDVSSGNITI 55 (181)
Q Consensus 10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g----l~~p~~G~i~i 55 (181)
..++...+.+ .|.-++|+|+||+|||||...+.+ +...+...|..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 4677888888 688999999999999999999987 44444444443
No 267
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.47 E-value=6.5e-05 Score=55.29 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 268
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.46 E-value=1.8e-05 Score=58.51 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.1
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++.+.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999998654
No 269
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.46 E-value=0.0001 Score=59.89 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=32.3
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcC--CCC-----CcceEEECCEE
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERF--YDV-----SSGNITISGVD 59 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p-----~~G~i~i~g~~ 59 (181)
-+++|+++.|.||+|||||||+..++.. .++ ..+.++|+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4789999999999999999999998875 322 23456666543
No 270
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.44 E-value=6.9e-05 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 271
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.43 E-value=7.6e-05 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
-.++++|++|||||||++.+.+-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999998653
No 272
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.43 E-value=5.7e-05 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 273
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.42 E-value=9.6e-05 Score=55.78 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=22.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++|-+++|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998644
No 274
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.41 E-value=6.1e-05 Score=57.61 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.5
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
+..|+.+++.||+||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 46799999999999999999887653
No 275
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.41 E-value=8.7e-05 Score=54.96 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 276
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.41 E-value=0.00013 Score=58.61 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=31.9
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcC-CCC------CcceEEECCE
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERF-YDV------SSGNITISGV 58 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p------~~G~i~i~g~ 58 (181)
-+++|+++.|.||+|||||||+..++.. ..| ..+.++++.+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 4789999999999999999999988764 334 3445666654
No 277
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.40 E-value=0.00038 Score=49.17 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
..+.-+.|.||+|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45667899999999999999999876543
No 278
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00019 Score=51.01 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 279
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.39 E-value=9.2e-05 Score=55.54 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|.||+||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 280
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.39 E-value=9.2e-05 Score=56.19 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=22.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 281
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.38 E-value=9.3e-05 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 282
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998764
No 283
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.37 E-value=0.0001 Score=58.08 Aligned_cols=23 Identities=22% Similarity=0.601 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 284
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.37 E-value=8.4e-05 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999998754
No 285
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.36 E-value=9.5e-05 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
..+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999986543
No 286
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.36 E-value=0.00011 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
No 287
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.35 E-value=0.00012 Score=52.20 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998754
No 288
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.35 E-value=0.00013 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.35 E-value=0.00011 Score=51.78 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 290
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.35 E-value=9.4e-05 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 291
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.34 E-value=0.00011 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 292
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.34 E-value=0.00012 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 293
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.34 E-value=9.2e-05 Score=55.96 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+.+++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998543
No 294
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=5.4e-05 Score=61.11 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=26.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVS 49 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~ 49 (181)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457799999999999999999999877553
No 295
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.34 E-value=0.0001 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 296
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.33 E-value=0.00013 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
...+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999998543
No 297
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.33 E-value=0.00013 Score=56.74 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|||||||++.+.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.33 E-value=0.00013 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 299
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.33 E-value=0.00016 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
+.-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 300
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.33 E-value=0.00012 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.++|+|++|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998653
No 301
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.32 E-value=0.00012 Score=51.73 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 302
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.32 E-value=0.00012 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 303
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.32 E-value=0.00013 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 304
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.31 E-value=0.00013 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 305
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.31 E-value=0.00013 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.30 E-value=0.00015 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
+.++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 307
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.30 E-value=0.00014 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 308
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.29 E-value=0.00014 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 309
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.29 E-value=0.00013 Score=59.98 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999985
No 310
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.29 E-value=0.00012 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 311
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.29 E-value=0.00013 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 312
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.29 E-value=0.00012 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 313
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.29 E-value=0.00015 Score=56.40 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 314
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.28 E-value=0.00012 Score=53.54 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 315
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.0002 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 316
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.28 E-value=0.00013 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 317
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.27 E-value=0.00018 Score=54.19 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 318
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.26 E-value=0.00014 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 319
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.26 E-value=0.00016 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 479999999999999999998754
No 320
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.26 E-value=0.00016 Score=55.94 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
--+++|.|++||||||+.+.|+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999774
No 321
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.26 E-value=0.00016 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.25 E-value=0.00016 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999976
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.25 E-value=0.00018 Score=55.44 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++-+++|.||+||||||+.+.|+-.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35668999999999999999999753
No 324
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.25 E-value=8.4e-05 Score=59.03 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=19.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 325
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.24 E-value=0.00015 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998854
No 326
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.24 E-value=0.00017 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 327
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.24 E-value=0.00018 Score=56.58 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++..+.|.||+|+|||||++++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999865
No 328
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.24 E-value=0.00017 Score=57.58 Aligned_cols=23 Identities=43% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|+|++|+|||||++.|.|-.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 329
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.24 E-value=0.00019 Score=51.49 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 330
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.23 E-value=0.00017 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 331
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.23 E-value=0.00017 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 332
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.23 E-value=0.00018 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
=.++++|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999763
No 333
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.23 E-value=0.00017 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 334
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.21 E-value=0.00019 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999753
No 335
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.21 E-value=0.0001 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
+.=.++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999974
No 336
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.20 E-value=0.0002 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
No 337
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.20 E-value=0.00019 Score=57.28 Aligned_cols=24 Identities=42% Similarity=0.378 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
-+++|+|+.|+|||||++.|.|-.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999999999999863
No 338
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.19 E-value=0.00018 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 339
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.19 E-value=0.0002 Score=52.16 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.0002 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 341
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.19 E-value=0.00021 Score=51.60 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 342
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.18 E-value=0.00018 Score=51.48 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 343
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.18 E-value=0.00017 Score=56.45 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|+|||||++.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988753
No 344
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.18 E-value=0.00021 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 345
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.16 E-value=0.00023 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 346
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.00028 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998765
No 347
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.15 E-value=0.00023 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998865
No 348
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.13 E-value=0.00022 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 349
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.13 E-value=0.00026 Score=51.36 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++.=.++++|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568999999999999999998743
No 350
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.12 E-value=0.00026 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 351
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.12 E-value=0.00013 Score=58.32 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
+..+.|.||+|+|||||++.++....+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999987643
No 352
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.12 E-value=0.00026 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997643
No 353
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.12 E-value=0.00026 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 354
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=52.10 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 355
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.12 E-value=0.00025 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 356
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.11 E-value=0.00024 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.11 E-value=0.00037 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 358
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.11 E-value=0.00025 Score=53.25 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 359
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00025 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.10 E-value=0.00038 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 361
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.10 E-value=0.00028 Score=55.60 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q psy10472 23 QKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~g 44 (181)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 362
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.10 E-value=0.00029 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 363
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.09 E-value=0.00029 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 364
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.09 E-value=0.00029 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 365
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.09 E-value=0.00031 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 366
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.09 E-value=0.00031 Score=54.96 Aligned_cols=30 Identities=40% Similarity=0.484 Sum_probs=23.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCcce
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDVSSGN 52 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~ 52 (181)
-.++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999976654443
No 367
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.00026 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 368
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.09 E-value=0.0003 Score=58.53 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=26.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
....++.|+|++||||||+.+.|+..+ |-+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 457899999999999999999998643 4455554
No 369
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.09 E-value=0.00044 Score=52.12 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=27.7
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++..-+.+ .|..++|+||+|||||||...|+.-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 456655555 4788999999999999999999864
No 370
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.09 E-value=0.00031 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 371
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.08 E-value=0.00014 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
-.++|+|++|+|||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 372
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.07 E-value=0.00019 Score=55.73 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=24.6
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.+++-+++|.|+.||||||+.+.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999999988763
No 373
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.07 E-value=0.00027 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
=.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 374
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.07 E-value=0.00032 Score=54.69 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.7
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
No 375
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.00029 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 376
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.07 E-value=0.00035 Score=53.01 Aligned_cols=29 Identities=31% Similarity=0.308 Sum_probs=24.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
-+|.++++.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35889999999999999999999876543
No 377
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00028 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 378
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.06 E-value=0.00032 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 379
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.06 E-value=0.00031 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 380
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.06 E-value=0.00029 Score=54.02 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.0
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
..+|.++++.|++||||||+.+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987653
No 381
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.06 E-value=0.00032 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
-.++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 382
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.06 E-value=0.00029 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10472 24 KVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~g 44 (181)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 383
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.05 E-value=0.0003 Score=55.15 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|||||||++.+.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 384
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00029 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
-.++|+|+.|||||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998753
No 385
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.05 E-value=0.00015 Score=61.37 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=30.6
Q ss_pred EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55 (181)
Q Consensus 17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i 55 (181)
+.+-+|+..+|+|++|+|||||++.|+.......+.+.+
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 456789999999999999999999998765443344433
No 386
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00033 Score=51.00 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.=.++++|+.|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999853
No 387
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.04 E-value=0.00024 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
=.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998764
No 388
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.04 E-value=0.00034 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 389
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.04 E-value=0.00036 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.++++|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999988544
No 390
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.00033 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00043 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+.+++|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 392
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00031 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 393
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.03 E-value=0.00038 Score=53.71 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
+|.++++.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.03 E-value=0.00035 Score=56.80 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999997653
No 395
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.03 E-value=0.00036 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 396
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00036 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00037 Score=51.20 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 398
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.02 E-value=0.00032 Score=55.55 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 399
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.02 E-value=0.00037 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998754
No 400
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.02 E-value=0.00041 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 401
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.01 E-value=0.0003 Score=50.98 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 402
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.01 E-value=0.00033 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 403
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.01 E-value=0.00044 Score=55.39 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.4
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
-|+.+.--+.+|+++.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3555554589999999999999999999888764
No 404
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.01 E-value=0.00037 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.=.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 405
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.00 E-value=0.00047 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
=.++++|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998643
No 406
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.00 E-value=0.00043 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.=.++++|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 407
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.99 E-value=0.00041 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888754
No 408
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.98 E-value=0.00029 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 409
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.00037 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 410
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.00037 Score=50.23 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987654
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.97 E-value=0.00048 Score=52.24 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
+|.++++-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 412
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.97 E-value=0.00038 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998763
No 413
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.97 E-value=0.00042 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 414
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.96 E-value=0.00043 Score=55.33 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=24.1
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
+++|+++.|.||+|+|||||...++.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999988875
No 415
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.96 E-value=0.00062 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
No 416
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.96 E-value=0.00047 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++.+++|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999866
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.96 E-value=0.00036 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998754
No 418
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.95 E-value=0.0005 Score=55.31 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 419
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.94 E-value=0.00053 Score=52.61 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.7
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+....-+.|.||+|+|||||.+.++...
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3555678999999999999999998754
No 420
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.94 E-value=0.00029 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.94 E-value=0.00052 Score=52.21 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=26.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
.+|.++++-|++||||||+.+.|.-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999987765
No 422
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.94 E-value=0.0004 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.++|+|+.|+|||||++.|.|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 799999999999999999998753
No 423
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.93 E-value=0.00064 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=22.4
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLE 43 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (181)
+++|+++.|.|++|+|||||..-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986553
No 424
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.92 E-value=0.0005 Score=55.46 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.92 E-value=0.00062 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
.+.|.||+|+|||||++.++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 899999999999999999987653
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.92 E-value=0.0005 Score=52.58 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
|.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998765
No 427
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.92 E-value=0.00037 Score=56.95 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=30.0
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCE
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGV 58 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~ 58 (181)
+++|+++.|.||+|+|||||...++...... ...++++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7899999999999999999998877543222 234556553
No 428
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.92 E-value=0.00048 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|++|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 429
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.92 E-value=0.00047 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 430
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.92 E-value=0.00057 Score=52.26 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
..|.++++.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987653
No 431
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.91 E-value=0.00043 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999753
No 432
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.91 E-value=0.00045 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 433
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.00055 Score=52.15 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=24.1
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+++..++.|+||.||||+|..+.|+--+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35566789999999999999999998543
No 434
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.89 E-value=0.0006 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 435
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.88 E-value=0.0004 Score=56.38 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=34.5
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~ 56 (181)
-|+.+.--+.+|+++.|.|++|+|||||+..++.......+.|.+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3555544689999999999999999999988876544344555443
No 436
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00052 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 437
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.87 E-value=0.00046 Score=58.01 Aligned_cols=22 Identities=45% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999984
No 438
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.00023 Score=57.07 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=27.5
Q ss_pred ccceeeEEecCC--cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 11 ILKDFNLRIPAG--QKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 11 vl~~isl~i~~G--e~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
+++.+.-.+..| ..+.|.||+|+|||||++++++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444444555 3489999999999999999998753
No 439
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.85 E-value=0.00016 Score=65.03 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=34.9
Q ss_pred eeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL 60 (181)
Q Consensus 15 isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i 60 (181)
.++.+.+++.++|.||+|+|||||.++|++... .+.+.+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 356678999999999999999999999999874 34455555444
No 440
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.85 E-value=0.00093 Score=49.27 Aligned_cols=33 Identities=27% Similarity=0.197 Sum_probs=25.8
Q ss_pred ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
.++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555544 478899999999999999988864
No 441
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.85 E-value=0.00054 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
-.++|+|++|+|||||++.++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988653
No 442
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.82 E-value=0.00014 Score=56.28 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10472 25 VAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 25 ~~liG~nGsGKSTLl~~l~gl 45 (181)
+.|.||+|+|||||+++++..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999874
No 443
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.81 E-value=0.00027 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 444
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.79 E-value=0.00065 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999997643
No 445
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00076 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 446
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.78 E-value=0.00066 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q psy10472 23 QKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~g 44 (181)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999988874
No 447
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.78 E-value=0.00075 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999765
No 448
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.77 E-value=0.00015 Score=60.75 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=32.1
Q ss_pred EEecCC--cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472 17 LRIPAG--QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59 (181)
Q Consensus 17 l~i~~G--e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~ 59 (181)
|.+.++ .+++++|++|+||||+...|++.+.....+|.+-..+
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 444434 5899999999999999999999876544456554433
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.77 E-value=0.00086 Score=53.85 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
..+++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998764
No 450
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.76 E-value=0.0003 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998865
No 451
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.76 E-value=0.00046 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLER 44 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~g 44 (181)
.=.++++|++|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34699999999999999999964
No 452
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.75 E-value=0.00064 Score=56.96 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+..+.|.||+|+|||||+++|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999865
No 453
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.72 E-value=0.00071 Score=56.86 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i 55 (181)
++.+++++|++||||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999877654445544
No 454
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.68 E-value=0.00087 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.67 E-value=0.0011 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
No 456
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.67 E-value=0.0012 Score=48.84 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=20.4
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIV-ALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl-~~l~gl 45 (181)
+|.++.+.||.||||||++ +.+..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 555443
No 457
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.65 E-value=0.00099 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+++|+||+|||||||...|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 458
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.64 E-value=0.00055 Score=61.32 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.4
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSS 50 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~ 50 (181)
+..|+.++|+||+||||||++.++++...+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 56789999999999999999999876654443
No 459
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.63 E-value=0.0014 Score=51.76 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFYDVSSG 51 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G 51 (181)
-.++++|.+|+|||||++.|.|-.....|
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 36899999999999999999987644333
No 460
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.62 E-value=0.0011 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998754
No 461
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.61 E-value=0.00092 Score=53.88 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
No 462
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.61 E-value=0.0013 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
+-.++|+|++|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
No 463
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.59 E-value=0.0012 Score=55.33 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=29.0
Q ss_pred cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444443488999999999999999999988876543
No 464
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.59 E-value=0.0012 Score=53.35 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
+|..+.|.||+|+|||||.+.++..+......+.+++
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 4568999999999999999999987754434455544
No 465
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.58 E-value=0.0014 Score=51.64 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++..+.|.||+|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999888765
No 466
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.58 E-value=0.0014 Score=49.29 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
|.++++=|+-||||||+++.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 467
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.56 E-value=0.0011 Score=53.96 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.-+++|+|+.|+|||||+..|++.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998765
No 468
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.54 E-value=0.0019 Score=52.43 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=26.6
Q ss_pred ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
..+.++++---.++|+|.++||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345566665556899999999999999999875
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.51 E-value=0.0016 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455779999999999999999999865
No 470
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.50 E-value=0.0009 Score=56.27 Aligned_cols=32 Identities=28% Similarity=0.607 Sum_probs=25.9
Q ss_pred EecCCcE--EEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472 18 RIPAGQK--VAIVGSSGNGKSTIVALLERFYDVS 49 (181)
Q Consensus 18 ~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~~p~ 49 (181)
.+..|.+ +.|.||+|+|||||.++|+......
T Consensus 44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 44 AIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3445554 8999999999999999999887554
No 471
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.48 E-value=0.0013 Score=54.98 Aligned_cols=22 Identities=45% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl 45 (181)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 472
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.45 E-value=0.001 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHH-HhcC
Q psy10472 24 KVAIVGSSGNGKSTIVAL-LERF 45 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~-l~gl 45 (181)
.++|+|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999998 5554
No 473
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.45 E-value=0.002 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFYD 47 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~~ 47 (181)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.44 E-value=0.0016 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
+...+.|.||+|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457889999999999999999875
No 475
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.44 E-value=0.0016 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|.+++|||||++.|.|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
No 476
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.43 E-value=0.0012 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.494 Sum_probs=23.9
Q ss_pred ecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 19 IPAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
+++|+++.|.||+|+|||||...++.-
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 679999999999999999999777643
No 477
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.42 E-value=0.0019 Score=51.05 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=22.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++...+.|.||+|+|||+|.++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334567888999999999999999765
No 478
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.42 E-value=0.00051 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
=.++++|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 45899999999999999888653
No 479
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.41 E-value=0.0018 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
No 480
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.41 E-value=0.0016 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.+..++++|++|+|||||++.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
No 481
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.39 E-value=0.003 Score=48.72 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
.+..+.|.||+|+|||+|.+.|......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 4567899999999999999999987654
No 482
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.39 E-value=0.0011 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|+.|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.37 E-value=0.0023 Score=51.09 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+..-+.|.||+|+|||+|.+.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45579999999999999999998763
No 484
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.37 E-value=0.0019 Score=52.15 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.6
Q ss_pred EecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 18 RIPAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
-+.+|..+.|.||.|+|||||...++.-
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4778888999999999999999998753
No 485
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.36 E-value=0.00032 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.++|+|++|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 486
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0021 Score=52.82 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=28.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEE
Q psy10472 24 KVAIVGSSGNGKSTIVALLERFYD-----------VSSGNITISGVD 59 (181)
Q Consensus 24 ~~~liG~nGsGKSTLl~~l~gl~~-----------p~~G~i~i~g~~ 59 (181)
.++|+|..-+||||||+.|+|-.. |..|.+.+.|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 589999999999999999998642 334666666644
No 487
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.34 E-value=0.0025 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.+..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346679999999999999999999765
No 488
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.33 E-value=0.002 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.597 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999765
No 489
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0023 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 22 GQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 22 Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999998764
No 490
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.30 E-value=0.0018 Score=55.78 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
-.++|+|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999864
No 491
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.28 E-value=0.0024 Score=55.94 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.|.++.|+|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998654
No 492
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.27 E-value=0.0028 Score=50.30 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=26.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g 57 (181)
.|..+.|.||.|+|||||++.+.... |.++++.
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~ 62 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER----PGILIDC 62 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEe
Confidence 36899999999999999999998654 3566554
No 493
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.26 E-value=0.0014 Score=55.39 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.|=.++|+|+.|+|||||++.|++-
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999875
No 494
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.26 E-value=0.0017 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
++..++++|.+|+|||||++.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4678999999999999999999986
No 495
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.26 E-value=0.0025 Score=55.21 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 21 AGQKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
.|-++.|.|.+||||||+.+.|...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998764
No 496
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.23 E-value=0.002 Score=56.06 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
-.++|+|+.|+|||||++.|.|-.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999864
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.20 E-value=0.0026 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERFY 46 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl~ 46 (181)
..+.|.||+|+|||||++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 358999999999999999998764
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.19 E-value=0.0031 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q psy10472 23 QKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 23 e~~~liG~nGsGKSTLl~~l~gl 45 (181)
-..+|+|+.||||||+.+.|+--
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999653
No 499
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.19 E-value=0.0033 Score=48.01 Aligned_cols=26 Identities=19% Similarity=0.011 Sum_probs=20.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERF 45 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl 45 (181)
.+|.++.+.||.|+||||++.-++.-
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999977655543
No 500
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.17 E-value=0.0028 Score=54.22 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=25.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472 20 PAGQKVAIVGSSGNGKSTIVALLERFYDV 48 (181)
Q Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p 48 (181)
+.|-.+.|+|.+||||||+-+.|+..+.-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999877654
Done!