RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10472
(181 letters)
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 238 bits (610), Expect = 1e-80
Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 42/207 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
ILK +L IP G+ VA+VGSSG GKST+V+LLERFYD +SG I + GVD++ L+ WLR
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
IGL++QEPVLF ++ ENIRYG +DE++EEAAK AN H FI P G
Sbjct: 78 Q-IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER 136
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESEKLVQ AL+ A KGRT ++IAH
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH 196
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLST++NADLI VLQ GQ+VE G H+
Sbjct: 197 RLSTIRNADLIAVLQNGQVVEQ-GTHD 222
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 204 bits (520), Expect = 5e-67
Identities = 95/207 (45%), Positives = 119/207 (57%), Gaps = 42/207 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+D +L IPAG+ VA+VG SG+GKST+V L+ RFYDV SG I I G D++ LR
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLR- 75
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
IGL++Q+ LF +V ENI YG + E++EEAA+ ANAH FI E P G
Sbjct: 76 RQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER 135
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE+LVQAALE K RT +IAH
Sbjct: 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAH 195
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLST++NAD IVVL+ G+IVE G HE
Sbjct: 196 RLSTIENADRIVVLEDGKIVER-GTHE 221
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 200 bits (512), Expect = 1e-65
Identities = 91/209 (43%), Positives = 118/209 (56%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ +LKD + IPAG+KVAIVG SG+GKSTI+ LL RFYDVSSG+I I G D++ + L
Sbjct: 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL 73
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R IG++ Q+ VLF ++ NIRYG +DE++ EAAK A H I FP G
Sbjct: 74 R-RAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVG 132
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
ALD +E+ +QAAL KGRT ++I
Sbjct: 133 ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI 192
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLST+ NAD I+VL+ G+IVE G HE
Sbjct: 193 AHRLSTIVNADKIIVLKDGRIVER-GTHE 220
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 183 bits (466), Expect = 8e-59
Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +LKD N I G+ VAIVG +G GK+T++ LL RFYD G I I G+D++ + L
Sbjct: 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL 75
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R ++IG++ Q+ LF+ ++ ENIR G + +DE++ EAAK A AH FI + P+G
Sbjct: 76 R-SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG 134
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
+D E+EKL+Q ALE KGRT ++I
Sbjct: 135 ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIII 194
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLST++NAD I+VL G+I+E G H+
Sbjct: 195 AHRLSTIKNADKILVLDDGKIIEE-GTHD 222
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 185 bits (471), Expect = 3e-56
Identities = 93/206 (45%), Positives = 113/206 (54%), Gaps = 42/206 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L NL + G+ VA+VG SG GKST+ LL RFYD SG I + GVDL+ LD LR
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR-A 414
Query: 72 VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
+ L+ Q+PVLFA SV ENIRYG +DE++E AA+ A+AH FIS P G
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERG 474
Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
ALD ESE+LVQ ALE+ KGRT L+IAHR
Sbjct: 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHR 534
Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHE 177
L+TV AD IVV+ G+IV G H
Sbjct: 535 LATVLKADRIVVMDQGRIVAQ-GTHA 559
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 169 bits (432), Expect = 2e-54
Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 17/169 (10%)
Query: 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT 66
R K +LKD +L I G+KVAIVG SG+GKST++ LL R YD +SG I I GVDL+ LD
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72
Query: 67 WLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF------- 119
LR N I + Q+P LF+ ++RENI +S Q ++A A + +
Sbjct: 73 SLRKN-IAYVPQDPFLFSGTIRENI------LSGGQ---RQRIAIARALLRDPPILILDE 122
Query: 120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 168
+ ALD E+E L+ AL + KG+TV++IAHRLST+++AD I+VL G+
Sbjct: 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 178 bits (453), Expect = 1e-53
Identities = 92/209 (44%), Positives = 122/209 (58%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +LKD + I G+KVAIVG SG+GKST++ LL R YD +SG I I G+D++ + L
Sbjct: 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R IG+++Q+P+LF+ ++RENI G +DE+IEEA KLANAH FI+ P G
Sbjct: 402 R-KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
ALD E+E L+Q AL+ KGRT L+I
Sbjct: 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLST++NAD I+VL G+IVE G HE
Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVER-GTHE 548
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 176 bits (448), Expect = 4e-52
Identities = 84/208 (40%), Positives = 113/208 (54%), Gaps = 42/208 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+D +L IP G+KVAIVG SG+GKST++ LL Y G I + GVDL +D LR
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+G + Q+P LF+ S+RENI G+ +DE+I EAA+LA AH FI P G
Sbjct: 548 Q-VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG 606
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD E+E ++ L +GRTV++IAH
Sbjct: 607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAH 666
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHEN 178
RLST+++AD I+VL G+IVE G HE
Sbjct: 667 RLSTIRSADRIIVLDQGKIVEQ-GSHEE 693
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 159 bits (403), Expect = 2e-49
Identities = 86/207 (41%), Positives = 113/207 (54%), Gaps = 42/207 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
IL + +LRI G+ V IVG SG+GKST+ L++RFY +G + + G DL D WLR
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
V G++ QE VLF S+R+NI D +S E++ EAAKLA AH FISE P G
Sbjct: 77 QV-GVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ 135
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE + + C GRTV++IAH
Sbjct: 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAH 195
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLSTV+NAD I+V++ G+IVE G H+
Sbjct: 196 RLSTVKNADRIIVMEKGRIVEQ-GSHD 221
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 164 bits (417), Expect = 3e-48
Identities = 80/207 (38%), Positives = 104/207 (50%), Gaps = 43/207 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L +L I G+ VA+VG SG+GKST+V L+ RFY+ SG I + G DL LR
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR-R 406
Query: 72 VIGLINQEPVLFATSVRENIRYGD-SSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+ L++Q+ VLF ++ NI YG +IE A A A F+ + P G
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALDNESE+LVQAALE +GRT L+IAH
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAH 526
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLST++ AD IVV+ G+IVE G H
Sbjct: 527 RLSTIEKADRIVVMDDGRIVER-GTHN 552
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 164 bits (418), Expect = 7e-48
Identities = 82/207 (39%), Positives = 108/207 (52%), Gaps = 42/207 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L + NL I G+ + IVG SG+GKST+ LL+R Y G + + GVDL D WLR
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+ G++ QE VLF+ S+R+NI + E + AAKLA AH FISE P G
Sbjct: 532 QM-GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE L+ + C+GRTV++IAH
Sbjct: 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLSTV+ D I+VL+ GQI E G+HE
Sbjct: 651 RLSTVRACDRIIVLEKGQIAES-GRHE 676
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 159 bits (403), Expect = 1e-46
Identities = 83/209 (39%), Positives = 110/209 (52%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ IL + IP G+ VAIVG SG GKSTI+ LL RFYDV+SG+ITI G D++ + L
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R IG++ Q+ VLF ++ NI+YG + E++ AA+ A H FI P G
Sbjct: 336 R-RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
ALD +E+ +QAAL GRT L+I
Sbjct: 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI 454
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLST+ +AD I+VL G+IVE G HE
Sbjct: 455 AHRLSTIIDADEIIVLDNGRIVER-GTHE 482
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 161 bits (409), Expect = 1e-46
Identities = 85/211 (40%), Positives = 111/211 (52%), Gaps = 44/211 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LK + G+ VA+VG SG+GKST+ ALL+ Y + G + + GV L D +L
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
V L+ QEPVLF+ SVRENI YG + DE+I AAK ANAH FI EFP+G
Sbjct: 556 QV-ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD E E+L+Q + RTVL+IAH
Sbjct: 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLLIAH 672
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
RLSTV+ AD I+VL+ G +VEM G H+ +
Sbjct: 673 RLSTVERADQILVLKKGSVVEM-GTHKQLME 702
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 158 bits (401), Expect = 6e-46
Identities = 82/207 (39%), Positives = 111/207 (53%), Gaps = 43/207 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L++ N +IPAG+ VA+VG SG+GKSTI LL RFYD+ G I + G DL+ LR N
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR-N 417
Query: 72 VIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+ L++Q LF ++ NI Y S EQIEEAA++A A FI++ +G
Sbjct: 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE+ +QAAL+ K RT L+IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLST++ AD I+V++ G+IVE G H
Sbjct: 538 RLSTIEKADEILVVEDGEIVER-GTHA 563
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 146 bits (371), Expect = 1e-44
Identities = 79/199 (39%), Positives = 108/199 (54%), Gaps = 41/199 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L+D + + G+ A+VG SG+GKST+VALLE FY G + + G + + +L
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH- 87
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+ + L+ QEPVLFA S+++NI YG S S E ++EAA+ A+AH FISE SG
Sbjct: 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK 147
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD ESE+ VQ AL + RTVL+IAH
Sbjct: 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
Query: 151 RLSTVQNADLIVVLQAGQI 169
RLSTV+ AD I+VL G+I
Sbjct: 208 RLSTVERADQILVLDGGRI 226
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 143 bits (364), Expect = 2e-43
Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 46/206 (22%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
L +LK+ + I G+KV IVG +G+GKS+++ L R ++SSG+I I GVD+ +
Sbjct: 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD 75
Query: 68 LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
LR I +I Q+PVLF+ ++R N+ D SDE++ +A + F+ P G
Sbjct: 76 LRSR-ISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVGLKEFVESLPGGLDT 131
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
++D E++ L+Q + A K TV
Sbjct: 132 VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTV 191
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
L IAHRL T+ ++D I+VL G++VE
Sbjct: 192 LTIAHRLDTIIDSDRILVLDKGRVVE 217
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 151 bits (384), Expect = 2e-43
Identities = 75/201 (37%), Positives = 103/201 (51%), Gaps = 41/201 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
++D + GQ VAIVG +G GKST++ LL+R +D SG I I G D++ + LR N
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410
Query: 72 VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
I ++ Q+ LF S+ +NIR G +DE++ AA+ A AH FI P G
Sbjct: 411 -IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469
Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
ALD E+E V+AAL+ KGRT +IAHR
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHR 529
Query: 152 LSTVQNADLIVVLQAGQIVEM 172
LSTV+NAD I+V G++VE
Sbjct: 530 LSTVRNADRILVFDNGRVVES 550
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 145 bits (367), Expect = 4e-41
Identities = 72/208 (34%), Positives = 99/208 (47%), Gaps = 41/208 (19%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L D NL I AGQ A+VG+SG GKST++ LL F + G I ++G+DL+ L
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF--------- 119
R I ++Q P LFA ++RENI SDE+I A A F+ +
Sbjct: 394 RKQ-ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452
Query: 120 ------------------------------PSGALDNESEKLVQAALESACKGRTVLMIA 149
P+ LD E+E+++ AL+ K +TVL+I
Sbjct: 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRL +AD IVVL G++VE G HE
Sbjct: 513 HRLEDAADADRIVVLDNGRLVE-QGTHE 539
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 134 bits (340), Expect = 5e-37
Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 41/199 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L + +L I G+KVAI+G G+GKST++ LL Y + G++ + GVD++ +D LR N
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540
Query: 72 VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
IG + Q+P LF ++R+NI G DE+I AA+LA F+ P G
Sbjct: 541 -IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599
Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
A+DN SE+ + L+ G+T++++ HR
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659
Query: 152 LSTVQNADLIVVLQAGQIV 170
S + D I+V+ G+IV
Sbjct: 660 TSLLDLVDRIIVMDNGRIV 678
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 132 bits (334), Expect = 1e-36
Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 43/194 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-GTWLRG 70
L+ + +P G++VA+VG SG GKST++ LL F D + G+I ++GV L D +W
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
I + Q P LFA ++ ENIR SD +I EA + A F++ P G
Sbjct: 398 --IAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
LD E+E V AL + +GRTVL++ H
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH 515
Query: 151 RLSTVQNADLIVVL 164
RL+ AD IVVL
Sbjct: 516 RLALAALADRIVVL 529
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 125 bits (317), Expect = 2e-36
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 41/199 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L + +L I AG+KVAI+G G+GKST++ LL Y +SG++ + G D++ LD LR N
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79
Query: 72 VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
IG + Q+ LF ++R+NI G DE+I AA+LA F+++ P+G
Sbjct: 80 -IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138
Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
A+D SE+ ++ L +T+++I HR
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHR 198
Query: 152 LSTVQNADLIVVLQAGQIV 170
S + D I+V+ +G+IV
Sbjct: 199 PSLLDLVDRIIVMDSGRIV 217
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 130 bits (329), Expect = 1e-35
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLD-G 65
KT+ N +PAGQ++A+VG SG GK++++ L F Y G++ I+G++L+ LD
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY---QGSLKINGIELRELDPE 419
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
+W + + + Q P L ++R+N+ G+ SDEQ+++A + A F+ P G
Sbjct: 420 SWRKH--LSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
+LD SE+LV AL +A + +T
Sbjct: 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTT 537
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
LM+ H+L + D I V+Q GQIV+
Sbjct: 538 LMVTHQLEDLAQWDQIWVMQDGQIVQ 563
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 129 bits (327), Expect = 3e-35
Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 44/207 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
++++F+L + GQ+VA+VG SG+GKSTI L+ Y SG I G+ + + L
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA- 552
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
N + +++Q+ LF +VR+N+ D ++ D + A K A H I+ P G
Sbjct: 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALD E+EK++ L +G T +++AH
Sbjct: 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAH 670
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
RLST+++ D I+VL+ G++V+ G HE
Sbjct: 671 RLSTIRDCDEIIVLERGKVVQR-GTHE 696
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 128 bits (323), Expect = 5e-35
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
LK+FNL + G+KVAI+G SG+GKST++ LL +D G+IT++GV++ LD LR
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
I ++ Q LF+ ++R+N+R + SDE++ A + + P G
Sbjct: 412 -ETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
LD +E+ V A L +G+T+LM+
Sbjct: 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVT 530
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRL ++ D I+VL G+I+E G H
Sbjct: 531 HRLRGLERMDRIIVLDNGKIIEE-GTHA 557
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 123 bits (310), Expect = 3e-33
Identities = 75/210 (35%), Positives = 107/210 (50%), Gaps = 41/210 (19%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
+ D + AGQ VAIVG +G GK+T++ LL+R YD + G I I G+D+ + LR
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR-K 409
Query: 72 VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
I + Q+ LF S+RENIR G +DE++ EAAK A AH FI + +G
Sbjct: 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERG 469
Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
ALD E+E V+ A+++ K RT +IAHR
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHR 529
Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
LSTV+NADL++ L G+++E E +K
Sbjct: 530 LSTVRNADLVLFLDQGRLIEKGSFQELIQK 559
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 121 bits (306), Expect = 2e-32
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 41/206 (19%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LK +L+I AG+KVA++G +G GKST++ LL R +D G I ++G + LR
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR- 413
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEA------------------------ 106
I +++Q LF+ ++R+N+ + SDE + E
Sbjct: 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473
Query: 107 ---------------AKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHR 151
A L +A + + P+ LD E+E+ + L + +TVLMI HR
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHR 533
Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHE 177
L+ ++ D I V+ GQI+E G H+
Sbjct: 534 LTGLEQFDRICVMDNGQIIE-QGTHQ 558
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 108 bits (273), Expect = 2e-30
Identities = 48/164 (29%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ +LK+ +L + G+K+A++G SG+GKST++ LL G IT+ GV + L+
Sbjct: 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKA-- 72
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEA-AKLANAHGFISEFPSGALDNE 127
++I ++NQ P LF T++R N+ S +++ A L +A + + P+ LD
Sbjct: 73 LSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132
Query: 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
+E+ + + + K +T++ I H L+ +++ D I+ L+ G+I+
Sbjct: 133 TERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 105 bits (263), Expect = 1e-28
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 26/187 (13%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
L +LK+ + ++ AG+K+ IVG +G GKST++ L RF + G I I G+D+ +
Sbjct: 20 LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED 79
Query: 68 LRGNVIGLINQEPVLFATSVRENI-RYGDSSVSDEQIEEA-------------------- 106
LR + + +I Q+P LF+ ++R N+ + + SDE+I A
Sbjct: 80 LR-SSLTIIPQDPTLFSGTIRSNLDPFDE--YSDEEIYGALRVSEGGLNLSQGQRQLLCL 136
Query: 107 --AKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 164
A L + + + ++D ++ L+Q + T+L IAHRL T+ + D I+V+
Sbjct: 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVM 196
Query: 165 QAGQIVE 171
AG++ E
Sbjct: 197 DAGEVKE 203
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 109 bits (275), Expect = 2e-28
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L++ N + GQ + I G +G+GKST+++L++R +DVS G+I + L L
Sbjct: 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSW 387
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R + +++Q P LF+ +V NI G + ++IE A+LA+ H I P G
Sbjct: 388 RSR-LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
A+D +E + L +GRTV++
Sbjct: 447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS 506
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLS + A I+V+Q G I + G H+
Sbjct: 507 AHRLSALTEASEILVMQHGHIAQR-GNHD 534
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 103 bits (259), Expect = 4e-26
Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 44/202 (21%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
IL D +L+I G+ VAIVG SG+GKST++ LL F SG++ G DL LD +R
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
+G++ Q L + S+ ENI G + ++ ++ EAA++A I P G
Sbjct: 528 Q-LGVVLQNGRLMSGSIFENI-AGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
ALDN ++ +V +LE R V IAH
Sbjct: 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIV--IAH 643
Query: 151 RLSTVQNADLIVVLQAGQIVEM 172
RLST++NAD I VL AG++V+
Sbjct: 644 RLSTIRNADRIYVLDAGRVVQQ 665
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 100 bits (252), Expect = 3e-25
Identities = 65/203 (32%), Positives = 93/203 (45%), Gaps = 44/203 (21%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L+ + + AG+ +AI+G SG+GKST+ L+ + +SG++ + G DLK D
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390
Query: 69 RGNVIGLINQEPVLFATSVRENI-RYGDSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
G IG + Q+ LF +V ENI R+G+ + E+I EAAKLA H I P G
Sbjct: 391 -GKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVI 448
Query: 123 -----------------------------------ALDNESEK-LVQAALESACKGRTVL 146
LD E E+ L A +G TV+
Sbjct: 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVV 508
Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
+I HR S + D I+VLQ G+I
Sbjct: 509 VITHRPSLLGCVDKILVLQDGRI 531
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 95.4 bits (238), Expect = 3e-25
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 36/176 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L++ + I G+ +AI+G SG+GKST+ L+ +SG + + G D+ D L
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76
Query: 71 NVIGLINQEPVLFATSVRENI-------R-------YGDSS--VSDEQIEEAAKLANAHG 114
+ +G + Q+ LF+ S+ ENI R YG+ V DE N+H
Sbjct: 77 H-VGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDE--------PNSH- 126
Query: 115 FISEFPSGALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQI 169
LD E E+ + A+ + G T ++IAHR T+ +AD I+VL+ G++
Sbjct: 127 ---------LDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 99.0 bits (247), Expect = 1e-24
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 41/182 (22%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L +L +P G++VAI+G SG+GKST++A L D G +T+ GV + LD +R
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR- 408
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGA------- 123
+ + Q+ LF T+VREN+R +DE++ A + ++ P G
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468
Query: 124 ---------------------------------LDNESEKLVQAALESACKGRTVLMIAH 150
LD E+ + L +A GRTV++I H
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
Query: 151 RL 152
L
Sbjct: 529 HL 530
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 98.9 bits (247), Expect = 2e-24
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 42/202 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K ILK + + AG+ + I+G SG+GKST+ LL + +SG++ + G DL+ D L
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
G IG + Q+ LF ++ ENI E++ EAA+LA H I P G
Sbjct: 409 -GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467
Query: 123 ----------------------------------ALDNESEKLVQAALESA-CKGRTVLM 147
LD+E E + AA+ +A +G TV++
Sbjct: 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527
Query: 148 IAHRLSTVQNADLIVVLQAGQI 169
IAHR S + + D I+VLQ G+I
Sbjct: 528 IAHRPSALASVDKILVLQDGRI 549
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 99.0 bits (247), Expect = 2e-24
Identities = 65/206 (31%), Positives = 95/206 (46%), Gaps = 42/206 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
IL D +L I K IVG SG+GKST+ LL F+ SG I ++G LK +D LR
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 71 NVIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSGALDNESE 129
I + QEP +F+ S+ EN+ G +VS ++I A ++A I P G SE
Sbjct: 549 -FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607
Query: 130 K-------------LVQAAL-ESAC-------------------------KGRTVLMIAH 150
+ L +A L +S + +T++ +AH
Sbjct: 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
RLS + +D I+VL G+I+E G H
Sbjct: 668 RLSVAKQSDKIIVLDHGKIIEQ-GSH 692
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 95.9 bits (239), Expect = 2e-23
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 43/212 (20%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R +L++ NL +P+ VA+VG +G+GKST+ +LL +Y ++ G I + G L L
Sbjct: 351 RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH 410
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
+ LR V ++ Q+PV+ A + N+ G +S+EQ+ +A + P G
Sbjct: 411 SVLRQGV-AMVQQDPVVLADTFLANVTLG-RDISEEQVWQALETVQLAELARSLPDGLYT 468
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
+D+ +E+ +Q AL + + T+
Sbjct: 469 PLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL 528
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
++IAHRLST+ AD I+VL GQ VE G H+
Sbjct: 529 VVIAHRLSTIVEADTILVLHRGQAVEQ-GTHQ 559
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 95.0 bits (236), Expect = 4e-23
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 46/206 (22%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
L +L+ N+ I G+KV IVG +G GKS++ L R + + G I I G+++ +
Sbjct: 1298 LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHD 1357
Query: 68 LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
LR I +I Q+PVLF+ S+R N+ D S SDE++ A +LA+ F+S P
Sbjct: 1358 LRFK-ITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALELAHLKTFVSALPDKLDH 1413
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
A+D E++ L+Q+ + + + TV
Sbjct: 1414 ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTV 1473
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
L IAHRL+T+ + ++VL G++ E
Sbjct: 1474 LTIAHRLNTIMDYTRVIVLDKGEVAE 1499
Score = 48.0 bits (114), Expect = 7e-07
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R L L IP G VA+VG G GKS++++ L D G++ + G
Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ 707
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRY------------------GDSS--------VS 99
W++ + + +E +LF ++ E Y GD + +S
Sbjct: 708 AWIQNDSL----RENILFGKALNEK-YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762
Query: 100 DEQIEEA----AKLANAHGFISEFPSGALDNESEKLVQAAL---ESACKGRTVLMIAHRL 152
Q + A +NA ++ + P A+D K + + E K +T +++ H +
Sbjct: 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822
Query: 153 STVQNADLIVVLQAGQIVEM 172
S + D+I+V+ G+I EM
Sbjct: 823 SYLPQVDVIIVMSGGKISEM 842
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 86.9 bits (215), Expect = 4e-21
Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 42/204 (20%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
LK +LK I GQKV I G +G+GKS++ R D+ G I I G+D+ L
Sbjct: 33 LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92
Query: 68 LRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
LR + +I Q+P+LF+ S+R N+ + +D+++ EA ++A + P G
Sbjct: 93 LRSR-LSIILQDPILFSGSIRFNLD-PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
++D +E ++Q + +A RTV+
Sbjct: 151 TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVT 210
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
IAHR+ST+ +ADL++VL G +VE
Sbjct: 211 IAHRVSTILDADLVLVLSRGILVE 234
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 86.1 bits (214), Expect = 4e-21
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL 63
K LKD +L IP G+ A++G SG GKST++ LL R D+ G + + G D+ L
Sbjct: 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72
Query: 64 DGT--WLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA---- 110
D LR V G++ Q+P F S+ +N+ YG DE++EEA + A
Sbjct: 73 DVDVLELRRRV-GMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD 131
Query: 111 ----NAHGF------------------------ISEFPSGALDNESEKLVQAALESACKG 142
H + E P+ ALD S ++ + K
Sbjct: 132 EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE-PTSALDPISTAKIEELIAELKKE 190
Query: 143 RTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
T++++ H + AD L G++VE
Sbjct: 191 YTIVIVTHNMQQAARVADRTAFLLNGRLVE 220
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 81.1 bits (201), Expect = 1e-19
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 14/170 (8%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
KT+L D +L I AG+ VA++G SG+GKST++ + + SG+I I G DL L+
Sbjct: 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELP 72
Query: 69 -RGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANA-----HGFISEFPS 121
IG++ Q+ LF +V ENI G +S Q + A LA A + + P+
Sbjct: 73 PLRRRIGMVFQDFALFPHLTVLENIALG---LSGGQQQRVA-LARALAMDPDVLLLDEPT 128
Query: 122 GALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQ 168
ALD + + V+A L+S G TV+++ H L AD +VVL+ G+
Sbjct: 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 79.0 bits (196), Expect = 1e-18
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 40/202 (19%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
+ L D +L I G+ V IVG +G+GKST++ LL +SG + + G DL L
Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70
Query: 66 TWLRGNVIGLINQEP--VLFATSVRENIRYG--DSSVSDEQIEEAAKLANAHGFISEF-- 119
LR V GL+ Q P F +V E + +G + + +E+IEE + A +
Sbjct: 71 KELRRKV-GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD 129
Query: 120 -------------------------------PSGALDNESEKLVQAAL-ESACKGRTVLM 147
P+ LD + + L + +G+T+++
Sbjct: 130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIII 189
Query: 148 IAHRLSTVQN-ADLIVVLQAGQ 168
+ H L + AD ++VL+ G+
Sbjct: 190 VTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 79.1 bits (196), Expect = 1e-18
Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 48/208 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
LKD NL I AG+ VAIVG SG+GKST ++ L++ +SG + I+G DL L
Sbjct: 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSE 74
Query: 66 ---TWLRGNVIGLINQEPVLFAT-SVRENIRYGD--SSVSDEQIEEAAK-LANAHG---- 114
LR IG + Q L +V EN+ + S + + AA+ L G
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDR 134
Query: 115 ----FISEF-------------------------PSGALDNESEKLVQAALESACK--GR 143
SE P+G LD+++ K V L K G+
Sbjct: 135 LLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGK 194
Query: 144 TVLMIAHRLSTVQNADLIVVLQAGQIVE 171
T++M+ H + AD ++ L+ G+I E
Sbjct: 195 TIIMVTHDPELAKYADRVIELKDGKIEE 222
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 79.1 bits (196), Expect = 2e-18
Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 46/208 (22%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL- 68
L D + I G+ + +VG SG+GKST+ + +SG+I G DL L
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78
Query: 69 -RGNVIGLINQEPVL-------FATSVRENIRYGDSSVSDEQIEEAAKLA-----NAHGF 115
R I ++ Q+P+ + E +R E +EA L
Sbjct: 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEV 138
Query: 116 ISEFP---SG--------------------------ALDNESEKLVQAALESACK--GRT 144
++ +P SG ALD + + L+ + G T
Sbjct: 139 LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198
Query: 145 VLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
+L I H L V AD + V+ AG+IVE
Sbjct: 199 LLFITHDLGVVAKIADRVAVMYAGKIVE 226
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 81.3 bits (201), Expect = 2e-18
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 40/204 (19%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
L +L + I +KV IVG +G GKS+++ L R ++ G I I G D+
Sbjct: 1251 LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMD 1310
Query: 68 LRGNVIGLINQEPVLFATSVRENIR-YGDSSVSD--EQIEEA----AKLANAHGFISEFP 120
LR V+G+I Q PVLF+ +VR N+ + + + +D E +E A N+ G +E
Sbjct: 1311 LR-KVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 121 SG--------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
A+D ++ L+Q + K T+L+I
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1429
Query: 149 AHRLSTVQNADLIVVLQAGQIVEM 172
AHRL+T+ + D I+VL AG++VE
Sbjct: 1430 AHRLNTIIDCDRILVLDAGRVVEF 1453
Score = 48.6 bits (116), Expect = 5e-07
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGK-STIVALLERFYDVSSGNITISGVDLKHLDGTW 67
+ L + NL +P G VAIVGS+G GK S I A+L S ++ I
Sbjct: 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------ 677
Query: 68 LRGNVIGLINQEPVLFATSVRENIRYG 94
RG V + Q +F +VR+NI +G
Sbjct: 678 -RGTV-AYVPQVSWIFNATVRDNILFG 702
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 76.5 bits (189), Expect = 4e-18
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 28/167 (16%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+T L + +L + AG+ VA+VG +G+GKST++ + +SG I I G D+ L L
Sbjct: 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL 71
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQ---IEEAAKLANAHGFIS--EFPSGA 123
R IG + Q +S Q + A L + E P+
Sbjct: 72 R-RRIGYVPQ-------------------LSGGQRQRVALARALLLNPDLLLLDE-PTSG 110
Query: 124 LDNESEKLVQAAL-ESACKGRTVLMIAHRLSTVQNA-DLIVVLQAGQ 168
LD S + + L E A +GRTV+++ H + A D ++VL+ G+
Sbjct: 111 LDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 77.2 bits (190), Expect = 1e-17
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K ILKD +++ G IVG SG GKST++ L+ R D + G+I I GVD+K +D L
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75
Query: 69 RGNVIGLINQEPVLFATSVRENIRYG 94
R IG++ Q+P LF +V++NI YG
Sbjct: 76 RRK-IGMVFQQPHLFEGTVKDNIEYG 100
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 75.6 bits (187), Expect = 3e-17
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L D +L + G+ +A++G SG GK+T++ L+ SG I I G D+ +
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PER 71
Query: 69 RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP- 120
R IG++ Q+ LF +V ENI +G + ++ E +L G ++ +P
Sbjct: 72 RN--IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129
Query: 121 --SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIAH 150
SG ALD + + ++ L+ + G T + + H
Sbjct: 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH 189
Query: 151 RLS-TVQNADLIVVLQAGQIVEM 172
+ AD I V+ G+IV++
Sbjct: 190 DQEEALALADRIAVMNEGRIVQV 212
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 77.0 bits (189), Expect = 7e-17
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV-DLKHLD 64
R+ I KD N + G+ A VG SG GKSTI+ L+ER YD + G+I I+ +LK ++
Sbjct: 395 RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN 454
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISE 118
W R IG+++Q+P+LF+ S++ NI+Y S+ D +E + N G S+
Sbjct: 455 LKWWRSK-IGVVSQDPLLFSNSIKNNIKYSLYSLKD--LEALSNYYNEDGNDSQ 505
Score = 62.4 bits (151), Expect = 1e-11
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 47/175 (26%)
Query: 49 SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAK 108
+SG I + GVD+ + LR N+ +++QEP+LF S+ ENI++G + E ++ A K
Sbjct: 1275 NSGKILLDGVDICDYNLKDLR-NLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACK 1333
Query: 109 LANAHGFISEFP----------------------------------------SGALDNES 128
A FI P + +LD+ S
Sbjct: 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
Query: 129 EKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVL----QAGQIVEMLGQHE 177
EKL++ + +T++ IAHR+++++ +D IVV + G V+ G HE
Sbjct: 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448
Score = 41.2 bits (96), Expect = 1e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
I KD + + AIVG +G+GKST+++LL RFYD+ + + +
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227
Score = 39.2 bits (91), Expect = 7e-04
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 107 AKLANAHGFISEFPSGALDNESEKLVQAALES--ACKGRTVLMIAHRLSTVQNADLIVVL 164
A + N I + + +LDN+SE LVQ + + + R ++IAHRLST++ A+ I VL
Sbjct: 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVL 652
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 75.4 bits (186), Expect = 1e-16
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
KT L + + G+ ++G +G GK+T++ +L +SG I + G D+
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPA 74
Query: 66 TWLRGNVIGLINQEPVLFAT-SVRENIRY------GDSSVSDEQIEEAAKLAN----AHG 114
R IG + QEP L+ +VREN+ + ++E+IEE +L A+
Sbjct: 75 KVRRR--IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANK 132
Query: 115 FISEFPSG-------------------------ALDNESEKLVQAALESACK--GRTVLM 147
+ G LD ES + + L K G T+L+
Sbjct: 133 KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192
Query: 148 IAHRLSTV-QNADLIVVLQAGQIVE 171
H L + D +++L G+I+
Sbjct: 193 STHILEEAEELCDRVIILNDGKIIA 217
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 75.4 bits (185), Expect = 3e-16
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 46/206 (22%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
L +L + + +KV +VG +G GKS+++ L R ++ G I I D+ T
Sbjct: 1248 LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD 1307
Query: 68 LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
LR V+ +I Q PVLF+ +VR NI D S +D + EA + A+ I P G
Sbjct: 1308 LR-RVLSIIPQSPVLFSGTVRFNI---DPFSEHNDADLWEALERAHIKDVIDRNPFGLDA 1363
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
++D ++ L+Q + K T+
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
L+IAHRL+T+ + D I+VL +GQ++E
Sbjct: 1424 LVIAHRLNTIIDCDKILVLSSGQVLE 1449
Score = 46.1 bits (109), Expect = 4e-06
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 55/209 (26%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALLERFYDVSSGNITISGVDLKH 62
+ + K L D NL IP G VAIVG +G GK++++ A+L + ++ I G
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG----- 679
Query: 63 LDGTWLRGNVIGLINQEPVLFATSVRENIRYGD--------------------------- 95
+ + Q +F +VRENI +G
Sbjct: 680 ---------SVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 96 -----------SSVSDEQIEEA-AKLANAHGFISEFPSGALDNE-SEKLVQAALESACKG 142
S +++ A A +N+ +I + P ALD + ++ + ++ KG
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG 790
Query: 143 RTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
+T +++ ++L + D I+++ G I E
Sbjct: 791 KTRVLVTNQLHFLPLMDRIILVSEGMIKE 819
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 73.7 bits (181), Expect = 1e-15
Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 41/205 (20%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
L +L+ + RI +KV IVG +G+GKST++ R +V G I ++G ++
Sbjct: 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRE 1381
Query: 68 LRGNVIGLINQEPVLFATSVRENI----------------------RYG------DS--- 96
LR +I Q+PVLF +VR+N+ R DS
Sbjct: 1382 LR-RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 97 ------SVSDEQIEEAAK--LANAHGFI-SEFPSGALDNESEKLVQAALESACKGRTVLM 147
SV Q+ A+ L GFI + + +D ++ +QA + SA TV+
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEM 172
IAHRL TV D I+V+ G + EM
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEM 1525
Score = 48.6 bits (116), Expect = 5e-07
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 54/202 (26%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +L+D ++ +P G+ ++G++G+GKST++ L +++S G + W
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WA 719
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDS--------SVSDEQIE-EAAKL---------- 109
+ I + Q+ + +VR NI + D +V Q+E + A+L
Sbjct: 720 ERS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778
Query: 110 --------------------ANAHGFISEFPSGALDNE-SEKLVQAALESACKGRTVLMI 148
AN ++ + P ALD E++V+ A G+T ++
Sbjct: 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA 838
Query: 149 AHRLSTVQNADLIVVLQAGQIV 170
H++ V AD +V L G++
Sbjct: 839 THQVHVVPRADYVVALGDGRVE 860
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 73.0 bits (180), Expect = 1e-15
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 57/219 (26%)
Query: 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKH 62
++D + + G+ + IVG SG+GKST ++ LL ++SG + + G DL
Sbjct: 20 GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79
Query: 63 LDGT---WLRGNVIGLINQEPVLFATS----------VRENIRYGDSSVSDEQIEEAAKL 109
L LRG I +I Q+P TS +RE +R E + A +L
Sbjct: 80 LSEREMRKLRGKRIAMIFQDP---MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL 136
Query: 110 ---------ANAHGFISEF-------------------------PSGALDNESEKLVQAA 135
+ + P+ ALD ++ +
Sbjct: 137 LEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 136 LESACK--GRTVLMIAHRLSTV-QNADLIVVLQAGQIVE 171
L+ + G VL I H L V + AD +VV+ G+IVE
Sbjct: 197 LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235
Score = 59.9 bits (146), Expect = 5e-11
Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 66/238 (27%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG--VDL 60
R + D + + G+ + +VG SG+GKST+ +L SSG+I G +DL
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357
Query: 61 KHLDGTWLRGNVIGLINQEPVLFAT-----SVRENI-------RYGDSSVSDEQIEEAAK 108
+ LR + ++ Q+P +++ +V + + G + ++ E +
Sbjct: 358 TGGELRRLRRRIQ-MVFQDP--YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE 414
Query: 109 L-----ANAHGFISEF-------------------------PSGALDNESEKLVQAA-LE 137
L + E P ALD VQA L
Sbjct: 415 LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD----VSVQAQVLN 470
Query: 138 SACK-----GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM--------LGQHENTRK 181
G T L I+H L+ V+ AD + V+ G+IVE QH TRK
Sbjct: 471 LLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRK 528
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 71.0 bits (175), Expect = 2e-15
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 45/197 (22%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
+L+D NL + G+ VAI+G SG GKST++ L+ +SG + + G +
Sbjct: 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG------P 70
Query: 70 GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS- 121
G IG + QE L +V +N+ G + + E+ +E +L GF ++P
Sbjct: 71 GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ 130
Query: 122 ----------------------------GALDNESEKLVQAALESACK--GRTVLMIAHR 151
GALD + + +Q L + +TVL++ H
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
Query: 152 LS-TVQNADLIVVLQAG 167
+ V AD +VVL
Sbjct: 191 VDEAVYLADRVVVLSNR 207
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 69.8 bits (172), Expect = 4e-15
Identities = 56/211 (26%), Positives = 83/211 (39%), Gaps = 47/211 (22%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVD 59
G LK +L I G+ VAIVG SG+GKST I+ L+R +SG + + G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTD 67
Query: 60 LKHLDG---TWLRGNVIGLINQEPVLFAT-SVRENIRYG---DSSVSDEQIEEAAKL--- 109
+ L R IG + Q L + EN+ E+ E A +L
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLER 127
Query: 110 ----ANAHGFISEF-------------------------PSGALDNESEKLVQAALESAC 140
+ + SE P+G LD+E+ K V L
Sbjct: 128 VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELN 187
Query: 141 K--GRTVLMIAHRLSTVQNADLIVVLQAGQI 169
K G T++++ H + AD I+ L+ G+I
Sbjct: 188 KEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 70.4 bits (173), Expect = 4e-15
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 40/202 (19%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K LKD +L I G++V ++G +G+GKST++ LL +SG + + G+D
Sbjct: 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76
Query: 69 RGNVIGLINQEPV--LFATSVRENIRYGD--SSVSDEQIE----EAAKLANAHGFISEFP 120
+GL+ Q P LF +V + + +G + E+IE EA +L + P
Sbjct: 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP 136
Query: 121 ---SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIA 149
SG LD + + + L+ + G+T++++
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196
Query: 150 HRLSTVQN-ADLIVVLQAGQIV 170
H L V AD +VVL G+I+
Sbjct: 197 HDLELVLEYADRVVVLDDGKIL 218
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 69.0 bits (170), Expect = 9e-15
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 47/212 (22%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
G T L+D +L + G+ VA+VG SG GKST++ ++ +SG + + G +
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG 70
Query: 63 LDGTWLRGNVIGLINQEPVLFA-TSVRENIRYGDSS--VSDEQIEEAA----KLANAHGF 115
G G + Q+ L +V +N+ G V + E A +L GF
Sbjct: 71 ------PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF 124
Query: 116 ISEFPS-----------------------------GALDNESEKLVQAALESACK--GRT 144
+ +P ALD + + +Q L + G+T
Sbjct: 125 ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKT 184
Query: 145 VLMIAHRLS-TVQNADLIVVLQA--GQIVEML 173
VL++ H + V AD +VVL A G+IV +
Sbjct: 185 VLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 68.5 bits (168), Expect = 4e-14
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
T + D +L I G+ V ++G SG GK+T++ ++ F SSG I + G D+ +
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-PEK 76
Query: 69 RGNVIGLINQEPVLFAT-SVRENIRYG-------DSSVSDEQIEEAAKLANAHGFISEFP 120
R IG++ Q LF +V EN+ +G + ++EEA +L GF P
Sbjct: 77 RP--IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 121 S 121
Sbjct: 135 H 135
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 65.9 bits (162), Expect = 5e-14
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 20/171 (11%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
KT L D +L + G+ ++G +G GK+T++ ++ SG I + G D+K + +
Sbjct: 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEV 71
Query: 69 RGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANAHGFISE----F---P 120
+ IG + +EP L+ +VREN++ S +Q +LA A + + P
Sbjct: 72 KRR-IGYLPEEPSLYENLTVRENLKL---SGGMKQ-----RLALAQALLHDPELLILDEP 122
Query: 121 SGALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169
+ LD ES + L K G+T+L+ +H L + D + +L G+I
Sbjct: 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 67.3 bits (165), Expect = 5e-14
Identities = 59/224 (26%), Positives = 85/224 (37%), Gaps = 54/224 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
L + +L I G+ + IVG SG+GKST ++A LE+ SSG+I + G L
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---SSGSILLDGKPLAPKKR 76
Query: 66 TWLRGNVIGLINQEPVL-------FATSVRENIRYGDSSVSDEQIEEAAKLAN-----AH 113
+ ++ Q+P + E +R S S ++I E
Sbjct: 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD 136
Query: 114 GFISEFPSG---------ALDNESEKL------------VQAA----LESACKGR--TVL 146
E G AL E + L VQA L K R T L
Sbjct: 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL 196
Query: 147 MIAHRLSTVQN-ADLIVVLQAGQIVEML--------GQHENTRK 181
I+H L+ V++ D I V+ GQIVE+ H TR+
Sbjct: 197 FISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRE 240
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 66.4 bits (163), Expect = 1e-13
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 47/206 (22%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKH-LD 64
K +LK +L + G+ V I+G SG+GKST+ + LE SG+IT+ G D+ D
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKD 71
Query: 65 GTWLRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLAN-----------A 112
LR V G++ Q+ LF +V EN+ V EA + A A
Sbjct: 72 ILKLRRKV-GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA 130
Query: 113 HGFISEF-------------------------PSGALDNESEKLVQAALESACK-GRTVL 146
+ ++ P+ ALD E V ++ + G T++
Sbjct: 131 DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMI 190
Query: 147 MIAHRLSTVQN-ADLIVVLQAGQIVE 171
++ H + + AD ++ + G+I+E
Sbjct: 191 IVTHEMGFAREVADRVIFMDQGKIIE 216
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 67.3 bits (165), Expect = 1e-13
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 41/203 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
T L D +L IP G+ I+G SG GKST++ L+ +SG++ + G DL L LR
Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79
Query: 70 G--NVIGLINQEPVLFAT-SVRENIRYG--DSSVSDEQIEE-AAKLAN-------AHGFI 116
IG+I Q L ++ +V EN+ + + V +I++ A+L A +
Sbjct: 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP 139
Query: 117 SEFPSG-------------------------ALDNESEKLVQAALESACK--GRTVLMIA 149
++ G ALD E+ + + L+ + G T+++I
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199
Query: 150 HRLSTVQN-ADLIVVLQAGQIVE 171
H + V+ D + VL G++VE
Sbjct: 200 HEMEVVKRICDRVAVLDQGRLVE 222
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 67.3 bits (165), Expect = 1e-13
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
+LKD NL I G+ V ++G SG GKST ++A LE + +SG I I G D+ L
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE---EPTSGEILIDGRDVTDLP- 71
Query: 66 TWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLANAHGFISE 118
RG I ++ Q L+ +V ENI +G + D++++E AKL ++
Sbjct: 72 PEKRG--IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR 129
Query: 119 FPSG 122
P
Sbjct: 130 KPLQ 133
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 65.8 bits (161), Expect = 2e-13
Identities = 58/197 (29%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVI 73
F+L +PAG+ VAI+G SG GKST++ L+ F +SG I I+GVD +
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA---ERPV 73
Query: 74 GLINQEPVLFA-TSVRENIRYGDS------SVSDEQIEEAAKLANAHGFISEFP---SG- 122
++ QE LFA +V +NI G S + E++E AA GF+ P SG
Sbjct: 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGG 133
Query: 123 -------------------------ALDNESEKLVQAALESAC--KGRTVLMIAHRLSTV 155
ALD + A + C + T+LM+ H
Sbjct: 134 QRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA 193
Query: 156 QN-ADLIVVLQAGQIVE 171
AD +V L G+I
Sbjct: 194 ARIADRVVFLDNGRIAA 210
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 66.0 bits (162), Expect = 2e-13
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
K LKD NL IP + A++G SG GKST++ L R D+ G + + G ++
Sbjct: 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG------DSSVSDEQIEEAAKLAN 111
+D LR V G++ Q+P F S+ +N+ YG DE +E + K A
Sbjct: 80 KVDVVELRRRV-GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAA 134
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 65.4 bits (160), Expect = 3e-13
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
K LK+ NL IP Q A++G SG GKST++ L R D+ G + G D+ K
Sbjct: 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
+D LR +G++ Q+P F S+ +NI YG D DE +EE+ K A
Sbjct: 74 KIDVVELRRR-VGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA 128
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 63.7 bits (156), Expect = 8e-13
Identities = 59/212 (27%), Positives = 88/212 (41%), Gaps = 51/212 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K LKD +L I G+ VA++G SG GKST++ L + +SG++ I G D+ L G L
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73
Query: 69 RG--NVIGLINQEPVLFA-TSVRENI---RYGDSS--------VSDEQIEEAAKLANAHG 114
R IG+I Q+ L SV EN+ R G S E+ + A G
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVG 133
Query: 115 FISEF---------------------------------PSGALDNESEKLVQAALESAC- 140
+ + P +LD S + V L+
Sbjct: 134 -LLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR 192
Query: 141 -KGRTVLMIAHRLSTV-QNADLIVVLQAGQIV 170
+G TV++ H++ + AD IV L+ G+IV
Sbjct: 193 EEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 63.7 bits (155), Expect = 1e-12
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
L D NL +P G VA++G SG+GKST++ ++ SG I ++G D + R
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---AR 70
Query: 70 GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS 121
IG + Q LF +VR+NI +G + ++EE +L G +P+
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 63.3 bits (155), Expect = 1e-12
Identities = 61/209 (29%), Positives = 87/209 (41%), Gaps = 50/209 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKHLD 64
+T+LK +L + G+ +AI+G SG+GKST IV LL SG + I G D+ L
Sbjct: 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP----DSGEVLIDGEDISGLS 68
Query: 65 GTWLRG--NVIGLINQEPVLF-ATSVRENIRYG---DSSVSDEQIEEAA--KLA--NAHG 114
L +G++ Q LF + +V EN+ + + +S+E+I E KL G
Sbjct: 69 EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG 128
Query: 115 FISEFP---SG------------ALDNE---------------SEKLVQAALE-SACKGR 143
+P SG ALD E S + G
Sbjct: 129 AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188
Query: 144 TVLMIAHRLSTV-QNADLIVVLQAGQIVE 171
T +M+ H L T AD I VL G+IV
Sbjct: 189 TSIMVTHDLDTAFAIADRIAVLYDGKIVA 217
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 64.7 bits (158), Expect = 1e-12
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 40/200 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TW 67
+LK +L I AG+ VAIVG+SG+GKST++ +L +SG ++G D+ LD
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 68 LRGNVIGLINQE---------------PVLFATSVR-----------------ENIRYGD 95
LR G I Q P ++A R + + Y
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142
Query: 96 SSVSDEQ---IEEAAKLANAHGFI-SEFPSGALDNESEKLVQAALESAC-KGRTVLMIAH 150
S +S Q + A L N I ++ P+GALD+ S + V A L +G TV+++ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 151 RLSTVQNADLIVVLQAGQIV 170
A+ ++ ++ G+IV
Sbjct: 203 DPQVAAQAERVIEIRDGEIV 222
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 63.9 bits (156), Expect = 1e-12
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 42/204 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K + D NL I G+ + ++G SG+GK+T + ++ R + +SG I I G D+ LD L
Sbjct: 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL 73
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRY------GDSSVSDEQIEEAAKLAN------AHGF 115
R IG + Q+ LF +V ENI D ++ +E L A +
Sbjct: 74 RRK-IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY 132
Query: 116 ISEF-------------------------PSGALDNESEKLVQAALESACK--GRTVLMI 148
E P GALD + K +Q ++ K G+T++ +
Sbjct: 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192
Query: 149 AHRLSTVQN-ADLIVVLQAGQIVE 171
H + AD I V+ AG+IV+
Sbjct: 193 THDIDEALKLADRIAVMDAGEIVQ 216
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 63.0 bits (154), Expect = 2e-12
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 47/213 (22%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVD 59
G+ T LKD +L +P G+ I+G SG GKST + LER +SG++ + G D
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTD 68
Query: 60 LKHLDGTWLRG--NVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLA 110
L L G LR IG+I Q L ++ +V EN+ + +E++ E +L
Sbjct: 69 LTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV 128
Query: 111 NAHGFISEFP---SG--------------------------ALDNESEKLVQAALESACK 141
+P SG ALD E+ + + A L +
Sbjct: 129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 142 --GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
G T+++I H + V+ D + V++ G++VE
Sbjct: 189 ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 63.7 bits (155), Expect = 3e-12
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 42/207 (20%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
K + D +L I G+ I+G SG+GKST V +L R + ++G I I G ++
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 68 LRGNV---IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFIS 117
LR IG++ Q+ LF ++ +N G E+ E KL +
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH 124
Query: 118 EFPS-----------------------------GALDNESEKLVQAALES--ACKGRTVL 146
+P ALD +Q L+ A +T++
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 147 MIAHRL-STVQNADLIVVLQAGQIVEM 172
I H L ++ D IV+++AG+IV++
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQV 211
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 62.4 bits (152), Expect = 3e-12
Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 41/203 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T 66
+ILK L + G+ VAIVG SG+GKST++A+L D SSG + + G L LD
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 67 WLRGNVIGLINQEPVLFAT-SVRENIRYG---DSSVSDEQIEEAAKLANAHG-------- 114
LR +G + Q L + EN+ S + A L A G
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHY 143
Query: 115 ------------------------FISEFPSGALDNESEKLVQAAL--ESACKGRTVLMI 148
++ P+G LD + + L + +G T++++
Sbjct: 144 PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV 203
Query: 149 AHRLSTVQNADLIVVLQAGQIVE 171
H D + L++G++VE
Sbjct: 204 THDPQLAARCDRQLRLRSGRLVE 226
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 63.0 bits (154), Expect = 4e-12
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 68/223 (30%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST----IVALL-ERFYDVSSGNITISGVDLKHLD 64
+ + + G+ + IVG SG+GKS I+ LL + + G I G DL L
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 65 GTW---LRGNVIGLINQEPVLFATS----------VRENIRYGDSSVSDEQIEEAA---- 107
+RG I +I Q+P TS + E +R +S ++ +E A
Sbjct: 79 EKELRKIRGKEIAMIFQDP---MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 108 ---KLANAHGFISEFP---SG--------------------------ALDNESEKLVQAA 135
+ + + +P SG ALD VQA
Sbjct: 136 ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD----VTVQAQ 191
Query: 136 LES------ACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
+ KG +++I H L V AD + V+ AG+IVE
Sbjct: 192 ILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 62.2 bits (151), Expect = 4e-12
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 52/209 (24%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK NL IPA Q A++G SG GKST++ L R D+ G + I+G +DG + GN
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG-VKITG--KLTMDGEDIYGN 75
Query: 72 V--------IGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA------ 110
+ +G++ Q+P F S+ EN+ YG D V DE +E + + A
Sbjct: 76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135
Query: 111 ----NAHGF-----------------------ISEFPSGALDNESEKLVQAALESACKGR 143
+H F + + P+ ALD + ++ +E K
Sbjct: 136 KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY 195
Query: 144 TVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
T++++ H + + +D G++VE
Sbjct: 196 TIVIVTHSMQQARRISDRTAFFLMGELVE 224
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 61.2 bits (149), Expect = 9e-12
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ L D + + G+ VA++G +G GKST+ +LL R Y G I+++G DL+ L
Sbjct: 14 RRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL 73
Query: 69 RGNVIGLINQEPVL-FATSVRENIRY 93
+G++ Q+P L SVR+N+RY
Sbjct: 74 AR--LGVVFQQPTLDLDLSVRQNLRY 97
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 61.2 bits (149), Expect = 1e-11
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 40/201 (19%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
LK+ + I G+ VAI+G +G+GKSTI +L SG I I G+ + + +
Sbjct: 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81
Query: 69 RGNVIGLINQEP--VLFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFI---S 117
R IG+I Q P +V ++I +G + I++ AK ++
Sbjct: 82 RKK-IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP 140
Query: 118 EFPSG------------ALD------NES---------EKLVQAALESACKG-RTVLMIA 149
+ SG AL+ +ES ++ + ++ +T++ I
Sbjct: 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISIT 200
Query: 150 HRLSTVQNADLIVVLQAGQIV 170
H + AD ++V G+++
Sbjct: 201 HDMDEAILADKVIVFSEGKLI 221
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 60.3 bits (147), Expect = 1e-11
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
++ IL D +L + AG+ +A+ G +G GK+T+ +L SSG+I ++G +K
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---- 65
Query: 66 TWLRGNVIGLINQEP--VLFATSVRENIRYGDSSVSD--EQIEEAAKLANAHGF------ 115
R IG + Q+ LF SVRE + G + EQ E K + +
Sbjct: 66 AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL 125
Query: 116 -----------------------ISEFPSGALDNESEKLVQAA-LESACKGRTVLMIAHR 151
I + P+ LD ++ + V E A +G+ V++I H
Sbjct: 126 SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185
Query: 152 LSTVQN-ADLIVVLQAGQIV 170
+ D +++L G IV
Sbjct: 186 YEFLAKVCDRVLLLANGAIV 205
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 60.4 bits (147), Expect = 2e-11
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 28/140 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
LK+ NL I Q A +G SG GKST++ R Y++ + G I + G ++ D
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLANAHGFIS 117
LR V G++ Q+P F S+ +NI +G + DE++E A
Sbjct: 89 IALLRAKV-GMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALT--------- 138
Query: 118 EFPSGALDNE-SEKLVQAAL 136
AL NE +KL Q+
Sbjct: 139 ---KAALWNEVKDKLHQSGY 155
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 59.9 bits (145), Expect = 2e-11
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 42/194 (21%)
Query: 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
F+L + G+ VAI+G SG GKST++ L+ F + +SG+I ++ H G +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS--HT-GLAPYQRPVS 73
Query: 75 LINQEPVLFA-TSVRENIRYGD------SSVSDEQIEEAA-------------------- 107
++ QE LFA +VR+NI G ++ E++ +AA
Sbjct: 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQ 133
Query: 108 --KLANAHGFISEFPS-------GALDNESEKLVQAALESAC--KGRTVLMIAHRLS-TV 155
++A A + P ALD + + A ++ C + RT+LM+ H LS
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193
Query: 156 QNADLIVVLQAGQI 169
A I V+ G+I
Sbjct: 194 AIASQIAVVSQGKI 207
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 60.0 bits (146), Expect = 3e-11
Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
LKD NL I G+ VAI+G SG GKST++ L D +SG I +GV + L G L
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76
Query: 69 RGNV--IGLINQEPVLFA-TSVRENIRYG 94
R IG+I Q+ L SV EN+ G
Sbjct: 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLG 105
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 59.7 bits (145), Expect = 4e-11
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
LK NL I Q A++G SG GKST + L R D+ G + + G D+ +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
LR V G++ Q+P F S+ +N+ YG D DE +E++ K A
Sbjct: 79 VNQLRKRV-GMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA 130
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 60.0 bits (146), Expect = 5e-11
Identities = 68/238 (28%), Positives = 92/238 (38%), Gaps = 69/238 (28%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKS----TIVALLERFYDVS-SGNITISGVDLKHL 63
+K + I AG+ +A+VG SG+GKS +I+ LL SG+I G DL
Sbjct: 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82
Query: 64 DGTWL---RGNVIGLINQEPVLFATS----------VRENIRYGDSSVSDEQIEEAA--- 107
L RGN IG+I QEP+ TS + E +R +S A
Sbjct: 83 SERQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRL-HRGLSRAAARARALEL 138
Query: 108 ----KLANAHGFISEFP---SG----------ALDNESEKL------------VQAALES 138
+ + +P SG AL NE + L VQA +
Sbjct: 139 LELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD 198
Query: 139 ACK------GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE--------MLGQHENTRK 181
K G +L I H L V+ AD + V+Q G+IVE QH TRK
Sbjct: 199 LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRK 256
Score = 40.7 bits (96), Expect = 2e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
+ +L + GQ + +VG SG+GKST+ L R S G I G D+ L +R
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMR 359
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 58.4 bits (142), Expect = 5e-11
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 48/200 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
K IL D NL I G+ AI+G SG+GKST I+ LLE+F SG + ++G + L+
Sbjct: 11 KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGQETPPLNS 67
Query: 66 ----TWLRGNVIGLINQEPVLFAT-SVRENIR----YGDSSVSDEQ---IE--------- 104
+ R +G + Q L +V EN+ Y S +++ E
Sbjct: 68 KKASKFRR-EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL 126
Query: 105 ------------EAAKLANAHGFISEF-------PSGALDNE-SEKLVQAALESACKGRT 144
E ++A A + P+G+LD + ++++ LE +G+T
Sbjct: 127 KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186
Query: 145 VLMIAHRLSTVQNADLIVVL 164
++++ H + AD ++ L
Sbjct: 187 IIIVTHDPEVAKQADRVIEL 206
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 59.4 bits (144), Expect = 6e-11
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 40/198 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK +L IP G K A++G +G GKST++ L Y G + + G ++ + W+R
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 72 VIGLINQEP--VLFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP--- 120
V GL+ Q+P +F+++V +++ +G D + ++EEA K F + P
Sbjct: 81 V-GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139
Query: 121 ----------SGALDNESEKLV----QAALESACK-------------GRTVLMIAHRLS 153
+G L + + +V A L+ + G+TV++ H +
Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199
Query: 154 -TVQNADLIVVLQAGQIV 170
+ AD ++VL+ G+++
Sbjct: 200 LAAEWADQVIVLKEGRVL 217
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 58.4 bits (142), Expect = 6e-11
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 37/197 (18%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +L D +L + G+ +G +G GK+T + ++ SG IT G +
Sbjct: 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL- 71
Query: 69 RGNVIGLINQEPVLFAT-SVRENIRYGDS--SVSDEQIEEA------------------- 106
IG + + P + + REN+R + ++I+E
Sbjct: 72 --RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSL 129
Query: 107 ---AKLANAHGFIS--EF-----PSGALDNESEKLVQAALES-ACKGRTVLMIAHRLSTV 155
+L A + + P+ LD + K ++ + S +G TVL+ +H LS +
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEI 189
Query: 156 QN-ADLIVVLQAGQIVE 171
Q AD I ++ G+++E
Sbjct: 190 QKVADRIGIINKGKLIE 206
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 58.8 bits (142), Expect = 6e-11
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--KHL 63
ILK+ NL IP A++G SG GKST + L R D+ G+I + GVD+ +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 64 DGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
D LR V G++ Q+P F S+ +N+ YG D +E++EE+ K A
Sbjct: 78 DVVELRKKV-GMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA 130
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter
that serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the
transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition, to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 242
Score = 58.5 bits (142), Expect = 8e-11
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K + + NL I G+ + ++G SG+GK+T + ++ R + +SG I I G D++ D L
Sbjct: 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVEL 73
Query: 69 RGNVIGLINQEPVLFA-TSVRENI 91
R IG + Q+ LF +V ENI
Sbjct: 74 RRK-IGYVIQQIGLFPHMTVEENI 96
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 58.5 bits (142), Expect = 1e-10
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
K L D ++RIP + A +G SG GKST++ R D+ G I + G ++ K
Sbjct: 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
+D LR V G++ Q P F S+ EN+ YG + V DE +E + + A
Sbjct: 98 KVDVAELRRRV-GMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGA 152
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 56.3 bits (137), Expect = 2e-10
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 31/170 (18%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
L +L + G+ A++G +G GKST++ +L Y SG I + G
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG------------ 61
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDS-----SVSDEQIEEAAK--LANAHGFISEFPSG 122
+ V FA S R+ R G + SV + Q+ E A+ NA I + P+
Sbjct: 62 ---------KEVSFA-SPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTA 111
Query: 123 AL-DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
AL E E+L + +G V+ I+HRL V AD + VL+ G++V
Sbjct: 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 54.6 bits (132), Expect = 3e-10
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 36 STIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYG 94
ST++ L+ +SG I + G D L L IG++ Q+P LF +VREN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 95 -DSSVSDEQIEEAAKLANAHGFISEFPSGAL 124
+D + EEA + F+ P G L
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTL 91
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 56.5 bits (137), Expect = 3e-10
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
T L D NL I G+ V ++G SG GK+T + ++ + +SG I I G D+ L
Sbjct: 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK-D 71
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKL 109
R I ++ Q L+ +V +NI +G DE++ E A+L
Sbjct: 72 RD--IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 57.1 bits (138), Expect = 3e-10
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
L D +L Q A++G SG GKST + L R D+ G I + G ++
Sbjct: 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
H+D LR V G++ Q+P F S+ EN+ YG D + E++E + + A
Sbjct: 79 HVDVVELRRRV-GMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA 133
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 56.3 bits (137), Expect = 3e-10
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 18/86 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKST-IVALL-ERFYDVSSGNITISGVDLKHLDGTWL 68
LKD NL +P G+ VAIVG G+GKS+ + ALL E + SG++++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKLSGSVSVPG----------- 66
Query: 69 RGNVIGLINQEPVLFATSVRENIRYG 94
I ++QEP + ++RENI +G
Sbjct: 67 ---SIAYVSQEPWIQNGTIRENILFG 89
Score = 34.0 bits (79), Expect = 0.021
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 123 ALDNES-----EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 168
A+D E + L +T +++ H+L + +AD IVVL G+
Sbjct: 157 AVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 56.0 bits (136), Expect = 3e-10
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 42/187 (22%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGT 66
K +LK+ + + G+ AI+G SG GKST++ L R SG + I+G L +
Sbjct: 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD--KRS 79
Query: 67 WLRGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANAHG----------- 114
+ +IG + Q+ +L T +VRE + + AAKL G
Sbjct: 80 F--RKIIGYVPQDDILHPTLTVRETLMF------------AAKLRGLSGGERKRVSIALE 125
Query: 115 --------FISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLST--VQNADLIVV 163
F+ E SG LD+ S V + L GRT++ H+ S+ + D +++
Sbjct: 126 LVSNPSLLFLDEPTSG-LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL 184
Query: 164 LQAGQIV 170
L G+++
Sbjct: 185 LSQGRVI 191
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 56.3 bits (136), Expect = 3e-10
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 42/196 (21%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVI 73
F+L G+ AIVG SG+GKST++ L+ F SG + I+GVD+ +
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA---DRPV 72
Query: 74 GLINQEPVLFA-TSVRENIRYGDS------SVSDEQIEEAAKLANAHGFISEFPSGALDN 126
++ QE LFA +V +N+ G S + + IE A G P
Sbjct: 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGG 132
Query: 127 ESEK------LVQ-----------AALESACK--------------GRTVLMIAHRLSTV 155
E ++ LV+ AAL+ A + TVLM+ H+
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192
Query: 156 QN-ADLIVVLQAGQIV 170
+ A +V L G+I
Sbjct: 193 KRLAQRVVFLDNGRIA 208
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 56.5 bits (137), Expect = 4e-10
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 46/205 (22%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L +L I G+ ++G SG GK+T++ L+ F +SG I + G D+ +L
Sbjct: 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHK 71
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS 121
R + + Q LF +V ENI +G + E++ EA L G+ + PS
Sbjct: 72 RP--VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS 129
Query: 122 -----------------------------GALDNESEKLVQAALESACK--GRTVLMIAH 150
GALD + K +Q L+ K G T + + H
Sbjct: 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189
Query: 151 RLS---TVQNADLIVVLQAGQIVEM 172
T+ +D I V+ G+I ++
Sbjct: 190 DQEEALTM--SDRIAVMNKGKIQQI 212
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 56.8 bits (138), Expect = 4e-10
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 53/210 (25%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ IL +L +P G+ +AI+G SG+GKST++ L+ G I I G D+ L L
Sbjct: 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80
Query: 69 R--GNVIGLINQEPVLF-ATSVRENIRYG---DSSVSDEQIEEAAKL---------ANAH 113
+G++ Q+ LF + +V EN+ + + + + I E + A A
Sbjct: 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD 140
Query: 114 GFISEFPSG-----------ALD------------------NESEKLV---QAALESACK 141
+ SE G ALD ++L+ AL
Sbjct: 141 LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL--- 197
Query: 142 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
TV+M+ H L ++ AD + VL G+++
Sbjct: 198 --TVIMVTHDLDSLLTIADRVAVLADGKVI 225
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 56.7 bits (137), Expect = 4e-10
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
K L D +L IP A +G SG GKST + L R D +G IT+ G D+
Sbjct: 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG 94
LD LR V G++ Q+P F S+ EN+ YG
Sbjct: 92 RLDVVELRARV-GMVFQKPNPFPKSIYENVAYG 123
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 57.4 bits (139), Expect = 5e-10
Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 38/197 (19%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
LK I DF L AG+ A++G +G GKST++ ++ SG + I G L
Sbjct: 27 LKGI--DFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82
Query: 68 LRGNVIGLINQEPVLFAT-SVRENIRYG------------------------DSS----- 97
I L+ QEP+LF SV+ENI +G DSS
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLE 142
Query: 98 VSDEQIEEAAK--LANAHGFISEFPSGALD-NESEKLVQAALESACKGRTVLMIAHRLST 154
V+D QI E + + ++ I + P+ +L E+E+L E +G ++ I+H+L
Sbjct: 143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202
Query: 155 V-QNADLIVVLQAGQIV 170
+ Q AD I V++ G I
Sbjct: 203 IRQLADRISVMRDGTIA 219
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 56.4 bits (137), Expect = 6e-10
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K IL D + IP G+ I+G +G+GKST++ L SG + + G D+ L L
Sbjct: 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL 74
Query: 69 RGNVIGLINQEPVL-FATSVRENIRYG---------DSSVSDEQI-EEAAKLANAHGFI 116
+ + Q P F +V E + G S DE+I EEA +L
Sbjct: 75 AKK-LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA 132
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 56.2 bits (136), Expect = 7e-10
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 39/201 (19%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L D NL + G+ + I+G +G+GKSTI + S G + + G+D + W
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82
Query: 69 RGNVIGLINQEP--VLFATSVRENIRYGDSS--VSDEQI----EEAAKLANAHGF----- 115
N G++ Q P + AT V E++ +G + + E+I +E+ K + +
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP 142
Query: 116 ------------------------ISEFPSGALDNESEKLVQAALESACK--GRTVLMIA 149
I + P+ LD + V ++ K G T+++I
Sbjct: 143 HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202
Query: 150 HRLSTVQNADLIVVLQAGQIV 170
H + AD I+V+ +G++V
Sbjct: 203 HYMEEAVEADRIIVMDSGKVV 223
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 56.2 bits (136), Expect = 7e-10
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL--KHLDGT 66
K L + N+ I G+ V ++G +G+GKST++ L +SG I I GVD+ K + +
Sbjct: 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLS 79
Query: 67 WLRGNVIGLINQEP--VLFATSVRENIRYGDSS--VSDEQIEEAAKLA 110
+R V GL+ Q P LF ++ ++I +G + +S+E+IE K A
Sbjct: 80 DIRKKV-GLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRA 126
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 55.3 bits (134), Expect = 1e-09
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 49/207 (23%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
G LKD + I G++V I+G +G GKST++ L+ Y +SG + ++G
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG----- 88
Query: 63 LDGTWLRGNVIGLINQEPVLFATSVRENIR-----YGDS-SVSDEQIEEAAKLANAHGFI 116
L G + + RENI G + DE+++E + A FI
Sbjct: 89 -KVAPLIELGAGFDPE------LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI 141
Query: 117 SE----FPSG---------ALDNESEKL----VQAALESA----C---------KGRTVL 146
+ + SG A E + L V A ++A C K +T++
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 147 MIAHRLSTV-QNADLIVVLQAGQIVEM 172
+++H L + Q D + L+ GQI
Sbjct: 202 LVSHDLGAIKQYCDRAIWLEHGQIRME 228
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 55.3 bits (133), Expect = 1e-09
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 49/211 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDL--K 61
K +K+ ++I Q AI+G SG GK+T++ + R D G I G D+
Sbjct: 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA---- 110
LD T R V G++ Q+P F S+ +N+ +G D +EE+ K A
Sbjct: 76 QLDVTEYRKKV-GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 111 ------NAHGF-----------------------ISEFPSGALDNESEKLVQAALESACK 141
N G + + P+ ALD + + ++ LE +
Sbjct: 135 EVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE 194
Query: 142 GRTVLMIAHRLS-TVQNADLIVVLQAGQIVE 171
T++++ H + ++ AD I + G+++E
Sbjct: 195 NYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 54.6 bits (132), Expect = 2e-09
Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 49/211 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K LK+ NL I G+ VAI+G SG GKST++ + R + SSG+I + G D+ L G L
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKL 74
Query: 69 RG--NVIGLINQEPVLFA-TSVRENI---RYGDSSV--------SDEQIEEA-------- 106
R IG+I Q L +V EN+ R G S+E E A
Sbjct: 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG 134
Query: 107 -AKLA-----------------------NAHGFISEFPSGALDNESEKLVQAALESACK- 141
A A +++ P +LD ++ K V L+ K
Sbjct: 135 LADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE 194
Query: 142 -GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
G TV++ H++ + AD IV L+AG+IV
Sbjct: 195 DGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 54.1 bits (131), Expect = 2e-09
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGT 66
K ILK NL I G+ A++G +G+GKST+ + Y+V+ G I G D+ L
Sbjct: 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72
Query: 67 WLRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEA---------AKLANAHGFI 116
I L Q P + +RY + S + + LA +
Sbjct: 73 ERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLA----IL 128
Query: 117 SEFPSGALDNESEKLVQAALES-ACKGRTVLMIAH--RLSTVQNADLIVVLQAGQIVE 171
E SG LD ++ +LV + +G++VL+I H RL D + VL G+IV+
Sbjct: 129 DEPDSG-LDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 53.9 bits (129), Expect = 4e-09
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 46/208 (22%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDG 65
K L D N++I + A++G+SG GKST + R D + G + I G D+K+ D
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYG-------------DSSVSD--------EQIE 104
LR NV G++ Q+P +F S+ ENI Y ++ V D E+++
Sbjct: 75 VALRKNV-GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 105 EAAK---LANAHG-----------------FISEFPSGALDNESEKLVQAALESACKGRT 144
+ K LA + G + + P+ ALD S +++ L+ +
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193
Query: 145 VLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
++M+ H + + AD G+++E
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLGELIE 221
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 53.9 bits (130), Expect = 4e-09
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K IL D +L +P G+ A++G +G GKST++ R SG + + + L L
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDS---------SVSDEQIEEAA 107
+ L +VRE + YG S S D A
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 53.3 bits (129), Expect = 5e-09
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKHLDG 65
+LK +L + G+ V I+G SG+GKST+ + LLE SG I I G+ L
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKK 69
Query: 66 TW--LRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA 110
LR V G++ Q+ LF +V ENI V EA + A
Sbjct: 70 NINELRQKV-GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA 116
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 53.2 bits (129), Expect = 6e-09
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+T+L D +L + G+ VAI+G +G GKST++ L SG + ++G L
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP-AE 73
Query: 69 RGNVIGLINQEPVL-FATSVRENIRYGDSSVSDEQIEEAAKLANA 112
++ Q L F +V E + G + + E+ A +A A
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA 118
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 53.4 bits (129), Expect = 6e-09
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 42/202 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL--- 68
+ D +L + G+ I+G SG+GKST++ + R + +SG + I G D+ + L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP- 120
R I ++ Q L +V EN+ +G + +E+ EA +L G+ ++P
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159
Query: 121 --SG----------ALDNESEKLVQ----AALE--------------SACKGRTVLMIAH 150
SG AL + + L+ +AL+ A +T++ I H
Sbjct: 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 151 RLS-TVQNADLIVVLQAGQIVE 171
L ++ D I +++ G++V+
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQ 241
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 52.8 bits (127), Expect = 7e-09
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WL 68
L N+ I AG+ V +VG SG GKST++ L+ + +SG I ++G D+ L G +L
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 69 RGNVIGLINQEPVLFAT-SVRENI 91
R IG++ Q+ L +V EN+
Sbjct: 77 RRK-IGVVFQDFRLLPDRNVYENV 99
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 53.1 bits (127), Expect = 7e-09
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
K LK+ +++IP A++G SG GKST + L R D+ G ++I G D+
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG 94
+D LR NV G++ Q+P F S+ +N+ YG
Sbjct: 85 DVDVVELRKNV-GMVFQKPNPFPMSIYDNVAYG 116
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 53.0 bits (128), Expect = 8e-09
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGT 66
K ILK NL + G+ AI+G +G+GKST+ + Y+V+ G I G D+ L
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76
Query: 67 WLRGNVIGLINQEPV--------LFATSVRENIRYGDSSVSD--EQIEEAAKL 109
I L Q PV F + R + + ++++E A+L
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL 129
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component
of iron-siderophores, vitamin B12 and hemin
transporters and related proteins. ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 52.1 bits (126), Expect = 8e-09
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
+T+L D +L I AG+ V I+G +G GKST++ L SSG I + G DL L
Sbjct: 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS 67
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 53.3 bits (129), Expect = 8e-09
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L + +L IPAG+ ++G+SG GKST + LLER +SG + + G DL L L
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77
Query: 69 R 69
R
Sbjct: 78 R 78
Score = 28.6 bits (65), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 142 GRTVLMIAHRLSTV-QNADLIVVLQAGQIVEM 172
G T+++I H + V + D + V+ AG++VE
Sbjct: 191 GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 53.0 bits (128), Expect = 9e-09
Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 28/183 (15%)
Query: 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
+R + + I G+ + +VG SG GKST+ L+ + +SG I G D+ L
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENI--RYGDSSVSDEQIEEAAKLANAHGFISEF--- 119
R V+ L L + E RY +S Q + +A A +
Sbjct: 82 KEERRERVLEL------LEKVGLPEEFLYRY-PHELSGGQRQRIG-IARALALNPKLIVA 133
Query: 120 --PSGALDNESEKLVQA-------ALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169
P ALD VQA L+ G T L I+H LS V+ +D I V+ G+I
Sbjct: 134 DEPVSALD----VSVQAQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKI 188
Query: 170 VEM 172
VE+
Sbjct: 189 VEI 191
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 53.2 bits (128), Expect = 1e-08
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 45/204 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK NL + G+ A++G +G GKST++ +L ++ + G ITI+ ++ LD
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 72 VIGLINQE-PVLFATSVRENI--------------------------------------- 91
IG+I QE V+ +V EN+
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140
Query: 92 -RYGDSSVSDEQIEEAAK--LANAHGFISEFPSGALDN-ESEKLVQAALESACKGRTVLM 147
+ + S+S +Q+ E AK + +A I + P+ +L N E + L + +G ++
Sbjct: 141 EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVY 200
Query: 148 IAHRLSTVQN-ADLIVVLQAGQIV 170
I+H+L+ ++ D V++ G V
Sbjct: 201 ISHKLAEIRRICDRYTVMKDGSSV 224
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 53.1 bits (128), Expect = 1e-08
Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 53/207 (25%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISG---VDLKHLDG 65
L D +L I +G+ VA++G SG GKST I+A LE +G I ++G D+ +L
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLA- 73
Query: 66 TWLRGNVIGLINQEPVLFA-TSVRENIRYG--------DSSVSDEQIEEAAKLANAHGFI 116
+R +G + Q LF +V +NI +G + ++EE +L G
Sbjct: 74 --VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA 131
Query: 117 SEF-----------------------------PSGALDNESEKLVQAALES--ACKGRTV 145
+ P GALD + K ++ L G T
Sbjct: 132 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 146 LMIAHRLS-TVQNADLIVVLQAGQIVE 171
+ + H ++ AD +VVL G+I +
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQ 218
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 52.6 bits (126), Expect = 1e-08
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
K L D NL I + A++G SG GKST + L R D+ G + + G ++ K
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
+D LR V G++ Q+P F S+ +N+ YG D D+ +E A K A
Sbjct: 77 DVDVVELRKRV-GMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKA 131
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding
subunit; Provisional.
Length = 257
Score = 52.4 bits (126), Expect = 1e-08
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
+T+L +L IPAGQ VA+VG SG GKST++ LL
Sbjct: 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLL 58
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 52.1 bits (125), Expect = 2e-08
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
+K+ L IP Q A +G SG GKSTI+ R D+ G +T G +L +D
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG 94
+R IG++ Q+P F S+ +NI YG
Sbjct: 86 PVEVRRR-IGMVFQKPNPFPKSIYDNIAYG 114
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 51.8 bits (125), Expect = 2e-08
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
LKD + +P G+++ ++G +G GKST++ LL Y SG +T+ G + L
Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV------SSL 88
Query: 69 RGNVIGLINQEPVLFATSVRENIRY 93
G G P L + RENI
Sbjct: 89 LGLGGGF---NPEL---TGRENIYL 107
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 52.5 bits (127), Expect = 2e-08
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 42/201 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L +L + G+ A++G +G GKST++ +L Y SG I I G +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83
Query: 72 VIGLINQEPVLFAT-SVRENI---------------------------RYGDS------- 96
I ++QE L SV ENI R G
Sbjct: 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV 143
Query: 97 ---SVSDEQIEEAAK--LANAHGFISEFPSGALD-NESEKLVQAALESACKGRTVLMIAH 150
S++ Q+ E A+ +A I + P+ AL E+E+L +G ++ I+H
Sbjct: 144 GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203
Query: 151 RLSTV-QNADLIVVLQAGQIV 170
RL V + AD I VL+ G++V
Sbjct: 204 RLDEVFEIADRITVLRDGRVV 224
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 52.0 bits (125), Expect = 2e-08
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL--- 68
+ D +L + G+ I+G SG+GKST+V LL R + + G I + G D+ L L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP 120
R I ++ Q L +V EN+ +G + +E+ EA +L G+ ++P
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 51.9 bits (125), Expect = 3e-08
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL 63
K ++ + +L I G+ + ++G SG GK+T++ L+ F SG I + G D+ H+
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV 81
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 51.5 bits (124), Expect = 3e-08
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61
K +L D +L IP G +I+G +G GKST+++++ R SG ITI G++L
Sbjct: 14 KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT 66
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 51.2 bits (123), Expect = 4e-08
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L +L I G V ++GS+G GKST++ + +SG I I GVD+
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK-SVAK 77
Query: 69 RGNVIGLINQEP 80
R N++ + Q+P
Sbjct: 78 RANLLARVFQDP 89
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 51.3 bits (123), Expect = 4e-08
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
L D ++ IP Q A++G SG GKST + + R D+ G +T G ++ +D
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-----DSSVSDEQIEEAAKLA 110
LR IG++ Q+P F S+ +N+ YG DE++EE+ + A
Sbjct: 115 PVALRRR-IGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA 164
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 51.1 bits (122), Expect = 4e-08
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
LK +L + A++G SG GKST + L R D+ +GN+++ G ++ + D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
LR V G++ Q+P F S+ EN+ YG D +V DE +E + K A
Sbjct: 81 VVQLRKQV-GMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQA 132
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 51.0 bits (123), Expect = 4e-08
Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 51/212 (24%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
T + D +L + G+ V ++G +G GK+T+ L+ FY SSG + G D+ L +
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 70 GNVIGLINQEPVLFAT-SVRENIRYGDSSVS---------------DEQIEEAAKL---- 109
I Q LF +V EN+ G + E E A +L
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 110 ---ANAHGFISEFPSGA------------------LD--------NESEKLVQAALE-SA 139
A G LD E+E+L + E
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 140 CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
G T+L+I H + V AD IVVL G+++
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 51.1 bits (123), Expect = 4e-08
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 48/200 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ +L+D +L + G+ A++G +G GKST++ + SSG I I G ++
Sbjct: 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK----RR 72
Query: 69 RGNVIGLINQEPVL---FATSVRENIRYGD----------SSVSDEQIEEAAKLANAHGF 115
+ IG + Q+ + F +V++ + G + E+++EA +
Sbjct: 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL 132
Query: 116 ----ISEF-------------------------PSGALDNESEKLVQAAL-ESACKGRTV 145
I E P +D +K + L E +G+TV
Sbjct: 133 RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTV 192
Query: 146 LMIAHRLSTV-QNADLIVVL 164
LM+ H L V D ++ L
Sbjct: 193 LMVTHDLGLVMAYFDRVICL 212
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 51.5 bits (124), Expect = 5e-08
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 52/187 (27%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+T+L + N + G+++ I G SG GK++++ L + SG I++
Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP------------ 453
Query: 69 RGNVIGLINQEPVLFATSVRENIRY--GDSSVSDEQIEEA------AKLANAHG------ 114
+ + + Q P L ++RE + Y SD ++ LA
Sbjct: 454 ADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD 513
Query: 115 ------------------------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAH 150
F+ E S ALD E+E + L+ TV+ + H
Sbjct: 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATS-ALDEETEDRLYQLLKEELPDATVISVGH 572
Query: 151 RLSTVQN 157
R T+ N
Sbjct: 573 R-PTLWN 578
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 50.6 bits (121), Expect = 6e-08
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
+K+ IP G+ A++G SG GKST++ L R D+ G + G DL +D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGAL 124
+R IG++ Q+P F S+ ENI +G A +G+ +G +
Sbjct: 89 PVEVRRR-IGMVFQQPNPFPKSIYENIAFG---------------ARINGY-----TGDM 127
Query: 125 DNESEK-LVQAALESACK 141
D E+ L +AA+ CK
Sbjct: 128 DELVERSLRKAAVWDECK 145
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 50.4 bits (120), Expect = 6e-08
Identities = 56/217 (25%), Positives = 85/217 (39%), Gaps = 53/217 (24%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISG 57
GN L I DF + + A++G SG GKST + L R D +G I G
Sbjct: 15 GNYEALHGISLDFEEK----ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70
Query: 58 VDL--KHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAK 108
++ +D LR V G++ Q+P F SV +N+ YG D + D+++EE+ K
Sbjct: 71 QNIYGSKMDLVELRKEV-GMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLK 129
Query: 109 LA------------NAHGF---------------------ISEFPSGALDNESEKLVQAA 135
A NA F + + P+ ALD S ++
Sbjct: 130 QAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189
Query: 136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
L T +M+ H L +D L G ++E
Sbjct: 190 LMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 51.1 bits (122), Expect = 6e-08
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-GTW 67
+ +L+D + + GQ+V ++G +G+GKST+++ L R + G I I GV + TW
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290
Query: 68 LRGNVIGLINQEPVLFATSVRENI----RYGDSSVSDEQIEEAAKLANAHGFISEFPSGA 123
+ G+I Q+ +F+ + R+N+ ++ SDE+I + A+ I +FP
Sbjct: 1291 RKA--FGVIPQKVFIFSGTFRKNLDPYEQW-----SDEEIWKVAEEVGLKSVIEQFP-DK 1342
Query: 124 LD 125
LD
Sbjct: 1343 LD 1344
Score = 40.3 bits (94), Expect = 3e-04
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 4 NLRRLKT-ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
N T +LK+ + ++ GQ +A+ GS+G+GKS+++ ++ + S G I SG
Sbjct: 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----- 487
Query: 63 LDGTWLRGNVIGLINQEPVLFATSVRENIRYGDS 96
I Q + ++++NI +G S
Sbjct: 488 ---------RISFSPQTSWIMPGTIKDNIIFGLS 512
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 49.9 bits (120), Expect = 7e-08
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 42/203 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-- 66
+ L+D + IP G+ V + G SG GKST++ L+ + G I ++G DL L G
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 67 -WLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLAN----AHG 114
+LR IG++ Q+ L +V EN+ ++ E L A
Sbjct: 75 PFLRRQ-IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA 133
Query: 115 FISEF-------------------------PSGALDNE-SEKLVQAALESACKGRTVLMI 148
S+ P+G LD + S ++++ E G TVLM
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193
Query: 149 AHRLSTVQNADL-IVVLQAGQIV 170
H L V ++ L+ G++V
Sbjct: 194 THDLELVNRMRHRVLALEDGRLV 216
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 50.0 bits (120), Expect = 7e-08
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
F+L + G++VAI+G SG GKST++ L+ F +SG++T++G D H R V
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD--HTTTPPSRRPVSM 75
Query: 75 LINQEPVLFA-TSVRENIRYGD------SSVSDEQIEEAAKLANAHGFISEFPS 121
L QE LF+ +V +NI G ++ E++ A+ ++ P
Sbjct: 76 LF-QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG 128
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 50.2 bits (120), Expect = 8e-08
Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 22/137 (16%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSS----GNITISGVDLKHLDGT 66
LK ++ IP A++G SG GKST + L R D + + G++ + G D+ + DG
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI-YQDGV 119
Query: 67 ---WLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGA 123
LR V G++ Q P F S+RENI YG D A+L G
Sbjct: 120 NLVELRKRV-GMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLL-----------GR 167
Query: 124 LDNESEK-LVQAALESA 139
D ++E LV+ +L A
Sbjct: 168 DDKDAEDELVERSLRQA 184
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 50.2 bits (120), Expect = 9e-08
Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 42/184 (22%)
Query: 27 IVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-T 85
++G SG GK+T++ LL F SG+I + G D+ ++ LR I ++ Q LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV-PPHLRH--INMVFQSYALFPHM 57
Query: 86 SVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS------------------ 121
+V EN+ +G + ++ EA +L F P
Sbjct: 58 TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117
Query: 122 -----------GALDNESEKLVQAALESACK--GRTVLMIAHRLS-TVQNADLIVVLQAG 167
ALD + +Q L++ + G T + + H + +D I +++ G
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Query: 168 QIVE 171
+I +
Sbjct: 178 KIAQ 181
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 49.5 bits (119), Expect = 9e-08
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 54/202 (26%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+L+D + + G+ +AIVG +G GKST++ + +SG+I + G K L+
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG---KPLEKERK 68
Query: 69 RGNVIGLINQEPVL---FATSVRENI---RYGDS------SVSDEQ-IEEA------AKL 109
R IG + Q + F SVR+ + YG S +D+ ++EA ++L
Sbjct: 69 R---IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL 125
Query: 110 ANAHGFISEFPSG-------------------------ALDNESEKLVQAALESAC-KGR 143
A+ I E G +D ++++ + L +G
Sbjct: 126 ADRQ--IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 144 TVLMIAHRLSTVQN-ADLIVVL 164
T+L++ H L V D +++L
Sbjct: 184 TILVVTHDLGLVLEYFDRVLLL 205
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 49.8 bits (119), Expect = 1e-07
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
K L D + IP + A++G SG GKST++ R D+ G+I +G ++
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
D LR IG++ Q P F S+ EN+ YG + D +E++ K A
Sbjct: 79 GADVVALRRK-IGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGA 133
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 49.4 bits (119), Expect = 1e-07
Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 47/206 (22%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
+ K + D +L + G+ ++G +G GK+T + +L +SG I+G + D
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-RTDR 70
Query: 66 TWLRGNVIGLINQEPVLFAT-SVRENIRY-----GDSSVSDEQIEEAA------------ 107
R + +G Q LF +VRE++R+ G + +I+E
Sbjct: 71 KAARQS-LGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDK 126
Query: 108 --------------KLANAHGFIS--------EFPSGALDNESEKLVQAALESACKGRTV 145
KL+ A I E SG LD S + + + KGR++
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG-LDPASRRAIWDLILEVRKGRSI 185
Query: 146 LMIAHRLSTVQN-ADLIVVLQAGQIV 170
++ H + + D I ++ G++
Sbjct: 186 ILTTHSMDEAEALCDRIAIMSDGKLR 211
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 49.7 bits (119), Expect = 1e-07
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 51/206 (24%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
D NL + G+ +A+VG SG+GKS I+ LL +SG I + G L +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRP---LLPLSIR 60
Query: 70 GNVIGLINQEPV-----LF--ATSVRENIRYGDSSVSDEQ-----------IEEAAKLAN 111
G I I Q P LF E +R + + + ++
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLK 120
Query: 112 AHGF-----------------------ISEFPSGALDNESEKLVQAALESACK--GRTVL 146
+ F I++ P+ LD ++ V L + G +L
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGIL 180
Query: 147 MIAHRLSTV-QNADLIVVLQAGQIVE 171
+I H L V + AD + V+ G+IVE
Sbjct: 181 LITHDLGVVARIADEVAVMDDGRIVE 206
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.6 bits (118), Expect = 1e-07
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
LK ++ I VA +G SG GKST + L R D+ G I I G ++ K +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
LR NV G++ Q P F S+ EN+ YG D++ +++EE K A
Sbjct: 79 VDELRKNV-GMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGA 130
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 49.7 bits (119), Expect = 1e-07
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGTW 67
+L D +L IP+GQ VA++G SG+GK+T I+A LE +SG+I G D+ L
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ---TSGHIRFHGTDVSRLHA-- 71
Query: 68 LRGNVIGLINQEPVLFA-TSVRENIRYG 94
R +G + Q LF +V +NI +G
Sbjct: 72 -RDRKVGFVFQHYALFRHMTVFDNIAFG 98
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 49.5 bits (118), Expect = 2e-07
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
+L++ + I GQ+V ++G +G+GKST+++ R + + G+I I GV + R
Sbjct: 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76
Query: 70 GNVIGLINQEPVLFATSVRENIR-YGDSSVSDEQIEEAAKLANAHGFISEFPSGALD 125
G+I Q+ +F+ + R+N+ YG SDE+I + A+ I +FP G LD
Sbjct: 77 -KAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVGLKSVIEQFP-GQLD 129
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 49.0 bits (118), Expect = 2e-07
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR- 69
IL +L +P G+ VA++G +G GK+T++ + SG+I G D+ L R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP-PHERA 73
Query: 70 --GNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEE 105
G IG + + +F +V EN+ G + + +
Sbjct: 74 RAG--IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKA 110
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 49.4 bits (118), Expect = 2e-07
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 47/204 (23%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
L+D +L I +G+ V ++G SG GK+T++ L+ F S G+I ++G + ++G G
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG---RRIEGP---G 73
Query: 71 NVIGLINQEPVLFA-TSVRENIRYGDSSV---SDEQIEEAAKLAN-------AHGFISEF 119
G++ Q L +V +N+ +G ++ E A ++ H +I +
Sbjct: 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQL 133
Query: 120 -------------------------PSGALDNESEKLVQAALESACK--GRTVLMIAHRL 152
P GALD + + +Q L + G+ VL+I H +
Sbjct: 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193
Query: 153 -STVQNADLIVVLQA--GQIVEML 173
+ A +VVL G++VE L
Sbjct: 194 EEALFLATRLVVLSPGPGRVVERL 217
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 49.6 bits (119), Expect = 2e-07
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ +L++ +L + G+++ +VG +G GKST++ +L + SG +T
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP------------ 63
Query: 69 RGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNE 127
+G +G ++QEP L +V + + G + E + E + + L+
Sbjct: 64 KGLRVGYLSQEPPLDPEKTVLDYVIEGFGEL-RELLAELEEAYALLADPDDELLAELEAL 122
Query: 128 SEKLVQAALESACK 141
E+L LE+ +
Sbjct: 123 LEELDGWTLEARAE 136
Score = 46.1 bits (110), Expect = 3e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
+ +LKD + RI G ++AIVG +G GKST++ LL SG + +
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain
of the sulfate transporter. Part of the ABC
transporter complex cysAWTP involved in sulfate import.
Responsible for energy coupling to the transport
system. The complex is composed of two ATP-binding
proteins (cysA), two transmembrane proteins (cysT and
cysW), and a solute-binding protein (cysP). ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 239
Score = 48.9 bits (117), Expect = 2e-07
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L D +L IP+G+ VA++G SG+GK+T++ L+ SG I G D + ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP---VQER 74
Query: 72 VIGLINQEPVLFA-TSVRENIRYG 94
+G + Q LF +V +N+ +G
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFG 98
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 49.3 bits (117), Expect = 2e-07
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS------GVDLKH 62
K ILKD ++IP I+G SG+GKST++ +L R ++ I + G D+
Sbjct: 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 63 LDGTWLRGNVIGLINQEPVLFA-TSVRENIRY 93
+D LR V G++ Q+P F S+ +NI Y
Sbjct: 83 IDAIKLRKEV-GMVFQQPNPFPHLSIYDNIAY 113
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 49.1 bits (117), Expect = 2e-07
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 50/212 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
K IL D NL I + A +G SG GKST + R D G + I G+D+
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG--------DSSVSDEQIEE-------- 105
+ LR V G++ Q+P F S+ +N+ YG + DE +E+
Sbjct: 78 DTNVVLLRAKV-GMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLW 136
Query: 106 ----------AAKLANAHG---------------FISEFPSGALDNESEKLVQAALESAC 140
A +L+ + + P ALD + +++ ++
Sbjct: 137 EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK 196
Query: 141 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
K T++++ H + + +D + Q+G+IVE
Sbjct: 197 KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system,
ATP-binding protein. This model represents LolD, a
member of the ABC transporter family (pfam00005). LolD
is involved in localization of lipoproteins in some
bacteria. It works with a transmembrane protein LolC,
which in some species is a paralogous pair LolC and
LolE. Depending on whether the residue immediately
following the new, modified N-terminal Cys residue, the
nascent lipoprotein may be carried further by LolA and
LolB to the outer membrane, or remain at the inner
membrane. The top scoring proteins excluded by this
model include homologs from the archaeal genus
Methanosarcina [Protein fate, Protein and peptide
secretion and trafficking].
Length = 221
Score = 48.9 bits (117), Expect = 2e-07
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL---DGT 66
+LK +L I G+ VAIVGSSG+GKST++ LL + +SG + +G L L +
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78
Query: 67 WLRGNVIGLINQ 78
LR +G I Q
Sbjct: 79 KLRNKKLGFIYQ 90
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 49.1 bits (117), Expect = 2e-07
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG--VDLKHLDGTWLR 69
LK N+ I G+ AI+G +G GKST+ L SSG I G +D LR
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 70 GNVIGLINQEP--VLFATSVRENIRYG 94
+V G++ Q+P LF+ SV +++ +G
Sbjct: 82 ESV-GMVFQDPDNQLFSASVYQDVSFG 107
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 48.6 bits (117), Expect = 2e-07
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 52/209 (24%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLR 69
L D + + G+ ++G +G GK+T+ L+ F +SG++ G D+ L
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 70 GNVIGLINQEPVLFAT-SVRENIR----------YGDSSVSDEQIEEAAK---------L 109
G IG Q P LF +V EN+ + E+ E + L
Sbjct: 76 G--IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 110 AN-AHGFISEFPSGA------------------LDN--------ESEKLVQAALESACKG 142
A+ A E G LD E+E+L + E +G
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193
Query: 143 RTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
TVL++ H + V + AD + VL G+++
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 49.1 bits (118), Expect = 2e-07
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 57/208 (27%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
D +L + G+ A++G +G GKST++ +L Y SG I +DG +R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI--------RVDGKEVRIK 71
Query: 72 V--------IGLINQEPVLFAT-SVRENI--------------------------RYG-- 94
IG+++Q +L T +V ENI RYG
Sbjct: 72 SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP 131
Query: 95 --------DSSVSDEQIEEAAK--LANAHGFISEFPSGAL-DNESEKLVQAALESACKGR 143
D SV ++Q E K A I + P+ L E+++L + A +G+
Sbjct: 132 VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191
Query: 144 TVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
T++ I H+L V AD + VL+ G++V
Sbjct: 192 TIIFITHKLKEVMAIADRVTVLRRGKVV 219
Score = 40.2 bits (95), Expect = 3e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
RR T +KD + + AG+ V I G +GNG+S +V + +SG I ++G D
Sbjct: 268 RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 48.6 bits (116), Expect = 3e-07
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
+K +++ + A++G SG+GKST + L R D +G I G+D+ K ++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
+R + IG++ Q P FA S+ ENI + D V DE +E + K A
Sbjct: 96 VYEMRKH-IGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA 147
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 48.7 bits (116), Expect = 3e-07
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 48/188 (25%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
LK+ NL I + AI+G SG GKST + L R ++ ++G I ++ K
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA------- 110
LR NV G++ Q+P F S+ +N+ YG D DE +E++ + A
Sbjct: 100 VEELRTNV-GMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK 158
Query: 111 -----NAHGF---------------------ISEFPSGALDNESEKLVQAALESACKGRT 144
NA+G + + P+ ALD S V+ ++ K +
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 145 VLMIAHRL 152
++++ H +
Sbjct: 219 IIIVTHNM 226
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.5 bits (115), Expect = 3e-07
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK-------HL 63
+LK+ N+ P Q AI+G SG GKST++ L R D+ SG V L +L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 64 DGTWLRGNVIGLINQEPVLFATSVRENIRYG 94
D LR V G++ Q+P F S+ +N+ +G
Sbjct: 79 DVVNLRKRV-GMVFQQPNPFPKSIFDNVAFG 108
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 48.2 bits (115), Expect = 3e-07
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGT 66
K IL+ NL + G+ AI+G +G+GKST+ A L Y+V+ G + G DL L
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73
Query: 67 WLRGNVIGLINQEPV 81
G I + Q PV
Sbjct: 74 DRAGEGIFMAFQYPV 88
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 48.1 bits (115), Expect = 3e-07
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 55/215 (25%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
G+LR K +L D NL I G+ V + G SG+GK+T++ L+ V G++ + G +L
Sbjct: 14 GSLR--KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYG 71
Query: 63 LDG---TWLRGNVIGLINQEPVLF-ATSVRENIRYG----DSSVSDEQIEEAAKLANAHG 114
LR N IG I Q L + R+N++ + E E A + A G
Sbjct: 72 ASEKELVQLRRN-IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG 130
Query: 115 F--------------------------------ISEFPSGALDNESEKLV-----QAALE 137
+++ P+ ALD++S + V + A E
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 138 SACKGRTVLMIAH--RLSTVQNADLIVVLQAGQIV 170
C T+L++ H R+ V AD IV ++ G+++
Sbjct: 191 QGC---TILIVTHDNRILDV--ADRIVHMEDGKLL 220
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 48.8 bits (116), Expect = 3e-07
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGT 66
T+L D +L I AG+ +A++G SG GK+T++ + F +G I I+ DL H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-P 76
Query: 67 WLRGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEF 119
RG + L+ Q LF V +N+ +G + E++ +A KL +
Sbjct: 77 HKRG--LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL 134
Query: 120 PS 121
P+
Sbjct: 135 PA 136
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 48.5 bits (116), Expect = 4e-07
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 40/199 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LKD + + G+ VAIVG +G+GKST+ LL +G IT+ G+ L + W
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE-ETVWDVRR 81
Query: 72 VIGLINQEP--VLFATSVRENIRYG--DSSVSDEQ----IEEAAKLANAHGFISEFP--- 120
+G++ Q P +V++++ +G + V E+ +++A + F++ P
Sbjct: 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141
Query: 121 SGA-------------------LDNESEKL----VQAALES-----ACKGRTVLMIAHRL 152
SG LD + L + LE+ KG TVL I H L
Sbjct: 142 SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201
Query: 153 STVQNADLIVVLQAGQIVE 171
AD ++V+ G+I+E
Sbjct: 202 DEAAQADRVIVMNKGEILE 220
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 48.3 bits (115), Expect = 4e-07
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKHLDGT 66
L + +L +PAGQ ++G+SG GKST+ V LLER +SG++ + G DL L +
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNS 75
Query: 67 WL---RGNVIGLINQE-PVLFATSVRENI 91
L R IG+I Q +L + +V N+
Sbjct: 76 ELTKARRQ-IGMIFQHFNLLSSRTVFGNV 103
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 47.7 bits (114), Expect = 5e-07
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K IL D + ++ G+ AIVG +G GK+T+++LL + SSG++T+ G + +
Sbjct: 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103
Query: 69 RGNVIGLIN---QEPVLFATSVRENIRYG--DSS------VSDEQIEEAAKLANAHG 114
IGL++ E +VR+ + G S ++ E + A L G
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG 160
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 48.1 bits (114), Expect = 5e-07
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 43/207 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
L++ NL I G+ + I+G +G+GKST+ L G + +SG+D D + L+G
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG--DFSKLQGI 75
Query: 71 -NVIGLINQEP--VLFATSVRENIRYG---------------DSSVSDEQIEE-----AA 107
++G++ Q P +V E++ +G D ++++ +E+
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 108 KLANAHG---------------FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHR 151
L+ G I + + LD +S V ++ KG+T++ I H
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195
Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHEN 178
L + +AD I+V+ G+IV + G+ EN
Sbjct: 196 LEELHDADRIIVMDRGKIV-LEGEPEN 221
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 47.9 bits (114), Expect = 6e-07
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 47/205 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---- 67
L + + + G VA+VG +G+GKST++ SSG ITI+G + G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 68 LRGNVIGLINQ--EPVLFATSVRENIRYG--DSSVSDEQIEEAAK-----------LANA 112
LR V L+ Q E LF +V +++ +G + S+++ +E A L +
Sbjct: 83 LRKKV-SLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK 141
Query: 113 HGF------------------------ISEFPSGALDNESEK-LVQAALESACKGRTVLM 147
F + E P+ LD E K ++Q + G TV++
Sbjct: 142 SPFELSGGQMRRVAIAGVMAYEPEILCLDE-PAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200
Query: 148 IAHRLSTV-QNADLIVVLQAGQIVE 171
+ H + V + AD ++VL+ G++++
Sbjct: 201 VTHNMDDVAEYADDVLVLEHGKLIK 225
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 47.8 bits (114), Expect = 6e-07
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 45/203 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL----KHLDGTW 67
L D NL I G A +G +G+GKSTI+ LL + + G++ + + K+ D
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 68 LRGNVIGLINQ--EPVLFATSVRENIRYGDSS--VSDEQIEEAAKLANAHGFISE----- 118
+R V GL+ Q E LF +V +++ +G + VS E+ E A+ A ISE
Sbjct: 83 IRKKV-GLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK 141
Query: 119 --FP-----------SGALDNESEKLV----QAALESACK-------------GRTVLMI 148
F +G L E + LV A L+ + G T++++
Sbjct: 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLV 201
Query: 149 AHRLSTVQN-ADLIVVLQAGQIV 170
H + V N AD + VL+ G++V
Sbjct: 202 THLMDDVANYADFVYVLEKGKLV 224
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 47.8 bits (114), Expect = 7e-07
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
T++ + NL I G V ++G SG GK+T++ L+ + G I I G D+ H ++
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQ 76
Query: 70 GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGF 115
I ++ Q LF S+ EN+ YG ++++EA +L + GF
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF 129
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 47.3 bits (113), Expect = 7e-07
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 49/209 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ +L +L + G+ +AI+G +G GKST++ L SG +T++GV L
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP-EE 72
Query: 69 RGNVIGLINQEPVL-FATSVRENIRYG-------DSSVSDEQIEEAA------------- 107
++ Q L F +V+E ++ G DE+I A
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD 132
Query: 108 ----------------KLANAHG--------FISEFPSGALD-NESEKLVQAALESACKG 142
LA F+ E P+ ALD ++ A + A +G
Sbjct: 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE-PTSALDIAHQHHTLRLARQLAREG 191
Query: 143 RTVLMIAHRLS-TVQNADLIVVLQAGQIV 170
VL + H L+ Q AD IV+L G+++
Sbjct: 192 GAVLAVLHDLNLAAQYADRIVLLHQGRVI 220
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 47.8 bits (113), Expect = 7e-07
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVD 59
+ R K +L D NL I + A +G SG GKST + L + D+ G I G +
Sbjct: 91 MNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150
Query: 60 L--KHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG--DSSVSDEQIEE 105
K + LR IG++ Q+P F S+ +N+ YG ++ ++D +I E
Sbjct: 151 TRSKKISSLELRTR-IGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE 199
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption.
This family shows strong sequence similiarity to a
number of amino acid ABC transporter ATP-binding
proteins.
Length = 252
Score = 47.5 bits (113), Expect = 7e-07
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
T+L N + AG+KVA++G SG+GKSTI+ +L + G I + G L H+ G
Sbjct: 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPG 69
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 47.5 bits (113), Expect = 7e-07
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 15/117 (12%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--K 61
K L +L + A++G SG+GKST++ + R D++ +G+I +G ++
Sbjct: 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLAN 111
D LR IG++ Q+P F S+ EN+ YG D V DE +E++ K A+
Sbjct: 78 RTDTVDLRKE-IGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS 133
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 46.9 bits (112), Expect = 9e-07
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 44/200 (22%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL-- 68
L D +L I G+ + + G SG GK+T++ LL S G + I+G D+ L G L
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76
Query: 69 --RGNVIGLINQE-PVLFATSVRENI------RYGDSSVSDEQIEEAAK---LANAHGFI 116
R IG++ Q+ +L +V EN+ R ++ A + L +
Sbjct: 77 LRRR--IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF 134
Query: 117 SEF--------------------------PSGALDNESEKLVQAALESACK-GRTVLMIA 149
E P+G LD + + + L+ K G TV++
Sbjct: 135 PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVAT 194
Query: 150 HRLSTVQN-ADLIVVLQAGQ 168
H LS V A +++L G+
Sbjct: 195 HDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 46.4 bits (111), Expect = 9e-07
Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ +LKD + I G ++ I G SG GKS++ L + SG I +
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM------------P 61
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSV--SDEQIEEAAKLANAH--------GFISE 118
G + + Q P L ++RE + Y V EQ +LA A F+ E
Sbjct: 62 EGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQ----QRLAFARLLLHKPKFVFLDE 117
Query: 119 FPSGALDNESEKLVQAALESACKGRTVLMIAHR 151
+ ALD ESE + L+ G TV+ + HR
Sbjct: 118 -ATSALDEESEDRLYQLLKEL--GITVISVGHR 147
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the
SUF system, shown in E. coli to consist of six proteins
and believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 46.9 bits (112), Expect = 9e-07
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDL 60
K ILK NL + G+ AI+G +G+GKST+ + Y+V+SG I G DL
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL 66
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 47.0 bits (112), Expect = 1e-06
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLDGT 66
D NL I A +G SG GKST++ L R ++V G + + G DL +D
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 67 WLRGNVIGLINQEPVLFAT-SVRENIRYG-------DSSVSDEQIEEAAKLAN 111
+R IG++ Q P F T S+R+N+ G + DE +E++ + AN
Sbjct: 82 AVR-RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGAN 133
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 46.9 bits (112), Expect = 1e-06
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI------SGVDLKHLDG 65
L D N+ IP+G VAI+G +G+GKST++ L +SG +TI +G K L
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 66 TWLRGNVIGLINQ--EPVLFATSVRENIRYGDSS--VSDEQIEEAAK 108
LR V G++ Q E LF +V ++I +G + VS+E ++ A+
Sbjct: 83 --LRKKV-GIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR 126
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 47.0 bits (112), Expect = 1e-06
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 42/204 (20%)
Query: 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL----KH 62
RL D + +P AI G SG+GK+T++ L+ G I ++G L K
Sbjct: 8 RLGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKG 67
Query: 63 LDGTWLRGNVIGLINQEPVLFA-TSVRENIRYG--DSSVSDEQIEEA------------- 106
+ + IG + QE LF SVR N+RYG + S+ +I
Sbjct: 68 IFLPPEK-RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG 126
Query: 107 ------------------AKLANAHGFISEFPSGALDNESEKLVQAALE--SACKGRTVL 146
A L++ + + P ALD+ + + LE A G +L
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 147 MIAHRLSTVQN-ADLIVVLQAGQI 169
++H L V AD +VVL+ G++
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRV 210
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 47.1 bits (112), Expect = 1e-06
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 44/204 (21%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH-LDGTWLRG 70
+ D N G+ AIVG +G+GKST++ + ++G +T+ + + H ++R
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 71 --NVIGLINQ--EPVLFATSVRENIRYGDSSVS---DEQIEEAAKLANAHGF-------- 115
IG++ Q E LF +V I +G + DE A +L GF
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 116 -------------------------ISEFPSGALDNESEKLVQAALES--ACKGRTVLMI 148
+ + P+ LD +S++ V L+S + +T++++
Sbjct: 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV 202
Query: 149 AHRLSTV-QNADLIVVLQAGQIVE 171
+H ++ V + AD ++V++ G IV
Sbjct: 203 SHDMNEVARYADEVIVMKEGSIVS 226
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 47.0 bits (111), Expect = 1e-06
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 42/203 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
+KD +L I G+ I+G SG+GKST+V LL R + + G + I GVD+ + LR
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 71 --NVIGLINQEPVLFA-TSVRENIRYGD--SSVSDEQIEEAA-------KLAN-AHGFIS 117
I ++ Q L +V +N +G + ++ E+ E A L N AH +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 118 EFPSG-------------------------ALDNESEKLVQAALE--SACKGRTVLMIAH 150
E G ALD +Q L A RT++ I+H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 151 RL-STVQNADLIVVLQAGQIVEM 172
L ++ D I ++Q G++V++
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQV 246
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 46.4 bits (111), Expect = 1e-06
Identities = 46/199 (23%), Positives = 77/199 (38%), Gaps = 40/199 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L +L + G ++G +G GK+T++ +L SSG I I G D+ L
Sbjct: 13 KRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QPQKL 70
Query: 69 RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLAN----AHGFIS 117
R IG + QE ++ +VRE + Y S +++E +L N A I
Sbjct: 71 RR-RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG 129
Query: 118 EF-------------------------PSGALDNESEKLVQAALESACKGRTVLMIAHRL 152
P+ LD E + L + R V++ H +
Sbjct: 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIV 189
Query: 153 STVQN-ADLIVVLQAGQIV 170
V++ + + VL G++V
Sbjct: 190 EDVESLCNQVAVLNKGKLV 208
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 46.8 bits (111), Expect = 1e-06
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVI 73
D +L I G+ A++G+SG GKST++ +L F ++G I + GVDL H+ + R I
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRP--I 93
Query: 74 GLINQEPVLFA-TSVRENIRYG 94
++ Q LF +V +NI +G
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFG 115
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 46.2 bits (110), Expect = 2e-06
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK--HLDGTW 67
+L + +L I G+ V I+G SG+GKST++ + + +++SG++ + G+ + +D
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 68 LRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLANA 112
+R G++ Q+ LF + EN+ +G V EEA K A
Sbjct: 75 IRQEA-GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE 119
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 46.1 bits (110), Expect = 2e-06
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--SGNITISGVDLKHLDGT 66
+ +L + + + G A++G SG GK+T++ +L +G I I+G + LD
Sbjct: 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING---RPLDKN 76
Query: 67 WLRGNVIGLINQEPVLFATS-VRENIRYGDSSV----SDEQ-------IEEAAK---LAN 111
+ R G + Q+ V VRE +R+ S++ S EQ +E AAK L
Sbjct: 77 FQR--STGYVEQQDVHSPNLTVREALRF--SALLRGLSVEQRKRLTIGVELAAKPSIL-- 130
Query: 112 AHGFISEFPSGALDNES-EKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQAG 167
F+ E P+ LD+++ +V+ + A G+ +L H+ S + D +++L+ G
Sbjct: 131 ---FLDE-PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 46.8 bits (111), Expect = 2e-06
Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 59/218 (27%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVA-----LLERFYDVSSGNI----------- 53
L + + + I+G+SG+GKST+V + ++ + G+I
Sbjct: 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99
Query: 54 TISGVDLKHLDGTWLRGNVIGLINQEP--VLFATSVRENIRYGDSSVSDEQIEEAAKLAN 111
+ K + LR + ++ Q P LF ++ ++I +G ++ ++ EA KLA
Sbjct: 100 ITNPYSKKIKNFKELR-RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK-SEAKKLAK 157
Query: 112 AH----GFISEF---------------------------------PSGALDNESEK-LVQ 133
+ G + P+ LD + E ++Q
Sbjct: 158 FYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217
Query: 134 AALESACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIV 170
L++ +TV +I H + V + AD ++V+ G+I+
Sbjct: 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 46.3 bits (110), Expect = 2e-06
Identities = 47/213 (22%), Positives = 71/213 (33%), Gaps = 55/213 (25%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+L + +L I G+ V ++G SG GKST+ LL + G ++ G DL LD
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83
Query: 69 RG----------NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISE 118
R + +N + + E +R+ S EQ A+L + G
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQ-IIGEPLRHLTSLDESEQKARIAELLDMVG---- 138
Query: 119 FPSGALDNESEKLVQAALESACKGRTV--------------------------------- 145
S D +L L+ R +
Sbjct: 139 LRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198
Query: 146 ------LMIAHRLSTVQN-ADLIVVLQAGQIVE 171
L I H L VQ+ + V+ GQIVE
Sbjct: 199 AFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 46.3 bits (110), Expect = 2e-06
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+T+L +L PAG+ ++G +G+GKST++ +L R S G I + L+
Sbjct: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 69 RGNVIGLINQEPVLFATSVRENI---RY------GDSSVSD-EQIEEAAKL 109
V L Q P +VRE + RY G +D E++EEA L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL 134
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 45.9 bits (110), Expect = 2e-06
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTW 67
L+ +L + G+ VA++G +G GK+T++ + SG I G D+ L
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 68 LRGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEA 106
G I + + +F +V EN+ G + D++ +E
Sbjct: 77 RLG--IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER 114
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 46.0 bits (110), Expect = 3e-06
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 16/109 (14%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKHLDGTW 67
++K +L + G+ + +VG SG GKST+ VA LER ++SG I I G + L+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA- 74
Query: 68 LRGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKL 109
R I ++ Q L+ SVREN+ YG + +E++ EAA++
Sbjct: 75 DRD--IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARI 121
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 45.2 bits (107), Expect = 3e-06
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R + + + + AG+ + + G +G+GK+T++ +L +G + ++G L
Sbjct: 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD 69
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGF 115
+ R ++ L + + SV EN+R+ + SDEQ+EEA +GF
Sbjct: 70 SIAR-GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF 118
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 223
Score = 44.5 bits (105), Expect = 6e-06
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
IL + +L + AG+ +AI G SG GKST++ ++ +SG + G D+ L R
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 71 NVIGLINQEPVLFATSVRENI 91
V Q P LF +V +N+
Sbjct: 78 QV-SYCAQTPALFGDTVEDNL 97
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 43.2 bits (103), Expect = 8e-06
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-ISGVDLKHLD 64
K +LKD +L I G ++ +VG +G GKST++ L+ + G +T S V + + +
Sbjct: 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE 69
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 44.0 bits (104), Expect = 8e-06
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH--LDGTWL 68
+LK N G+ +A++G++G GKST++ L SG + I G L +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 69 RGNVIGLINQEP--VLFATSVRENIRYG--DSSVSDEQIE----EAAKLANAHGF 115
R V GL+ Q+P LFA V +++ +G + +S+ ++E EA A G
Sbjct: 67 RQRV-GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGL 120
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 44.5 bits (105), Expect = 8e-06
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
+K N I + AI+G SG GKST + + R D+ ++G + G D+ K D
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG 94
LR IG++ Q+P F S+ +NI YG
Sbjct: 115 EVLLRKK-IGMVFQKPNPFPKSIFDNIAYG 143
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 44.3 bits (105), Expect = 9e-06
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL--R 69
LK N + G+ VA++G +G GKST+ +SG + I G +K+ + L R
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 70 GNVIGLINQEP--VLFATSVRENIRYG--DSSVSDEQIEEAAKLA 110
V G++ Q P LFA +V E++ +G + +S E++E+ K A
Sbjct: 78 KTV-GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA 121
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 43.8 bits (104), Expect = 1e-05
Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 12 LKDFNLRIP---AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L DF L+I + I G+SG GKST++ + G I ++G
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT-------VLF 62
Query: 69 RGNV----------IGLINQEPVLFA-TSVRENIRYG--------DSSVSDEQIE----- 104
IGL+ Q+ LF +VREN+ +G D DE ++
Sbjct: 63 DSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD 122
Query: 105 -------------EAAKLANAHGFISE-------FPSGALDNESEKLVQAALESACK--G 142
E ++A A ++ P ALD + L+ K
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 143 RTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
V+ + H LS + AD IVV++ G++
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 43.9 bits (104), Expect = 1e-05
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
++D + G+ ++G +G GK+T++ ++ SG +TI GVD R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK- 76
Query: 72 VIGLINQEPVLFA-TSVRENIRY 93
IG++ E L+A + REN++Y
Sbjct: 77 -IGVLFGERGLYARLTARENLKY 98
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 44.3 bits (105), Expect = 1e-05
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKS----TIVALLERFYDV-SSGNITISGVDLKH 62
++T++ D +L+I AG+ +A+VG SG+GKS +I+ LL V SG+I G L H
Sbjct: 21 VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80
Query: 63 LDGTWL---RGNVIGLINQEP 80
L RGN I +I QEP
Sbjct: 81 ASEQTLRGVRGNKIAMIFQEP 101
Score = 33.9 bits (78), Expect = 0.031
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 3 GNLRRL---KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
G L+R ++K+ + + G+ + +VG SG+GKST L R + S G I G
Sbjct: 290 GILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQP 348
Query: 60 LKHLD 64
L +L+
Sbjct: 349 LHNLN 353
Score = 28.5 bits (64), Expect = 1.9
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 116 ISEFPSGALDNESEKLVQAALESACK------GRTVLMIAHRLSTV-QNADLIVVLQAGQ 168
I++ P+ ALD VQA + + +L I H LS V + AD + V+Q G+
Sbjct: 179 IADEPTTALDVS----VQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234
Query: 169 IVE 171
VE
Sbjct: 235 CVE 237
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 43.7 bits (104), Expect = 1e-05
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKHLD 64
+ ++ D +L + +G+ V ++G +G GK+T IV L+ SG I + D+ L
Sbjct: 17 RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR----PDSGKILLDDEDITKLP 72
Query: 65 GTWLRGNV-IGLINQEPVLF-ATSVRENI------RYGDSSVSDEQIEEAAKLANAH 113
R + IG + QE +F +V +NI R D ++ + E A L H
Sbjct: 73 -MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH 128
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 43.7 bits (104), Expect = 1e-05
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL+ +L +P G+ ++G +G GK+T++ L V SG+I + G D+ L
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 70 GNVIGLINQEPVLFAT-SVRENIRYG 94
I + Q +F +V EN+ G
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTG 99
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 43.7 bits (103), Expect = 1e-05
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
+L + + I G+ +AIVGSSG+GKST++ LL +SG++ +G + L
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 68 LRGNVIGLINQ 78
LR +G I Q
Sbjct: 84 LRNQKLGFIYQ 94
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 43.8 bits (103), Expect = 1e-05
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK+ N+ + Q A++G SG GKST + R +D+ GN + L + L
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 72 V--------IGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
V I ++ Q+P F S+ EN+ YG S+ +E++E A + A
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNA 145
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 43.5 bits (103), Expect = 1e-05
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK+ +L + G I+G +G+GKS ++ + F SG I ++G D+ +L R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE-KRD- 72
Query: 72 VIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF 119
I + Q LF +V +NI YG ++ E K+ I+E
Sbjct: 73 -ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE----IAEM 116
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 43.9 bits (104), Expect = 1e-05
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
T LKD +L + G+ V ++G SG GK+T I+A LER ++G I G D+ L
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74
Query: 67 WLRGNVIGLINQEPVLFAT-SVRENIRYG 94
R G++ Q LF +V +NI YG
Sbjct: 75 -KRD--YGIVFQSYALFPNLTVADNIAYG 100
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 43.8 bits (103), Expect = 2e-05
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-------NITISGVDLKHLD 64
L D +L+IPA + +A +G SG GKST++ R D+ G + ++
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVS-----DEQIEEAAKLA 110
LR V G++ Q P F S+ ENI + + DE +E++ + A
Sbjct: 96 SVKLRRQV-GMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA 145
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 43.0 bits (102), Expect = 2e-05
Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 43/200 (21%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
T L D + + G+ ++G +G GK+T + ++ SG + G L
Sbjct: 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA---- 68
Query: 69 RGNVIGLINQEPVLF-ATSVRENIRY-----------------------GDSSVSDEQIE 104
N IG + +E L+ V + + Y S +++++E
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE 127
Query: 105 E------------AAKLANAHGFISEFPSGALDNESEKLV-QAALESACKGRTVLMIAHR 151
E AA + + I + P LD + +L+ E A G+TV++ H+
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
Query: 152 LSTVQN-ADLIVVLQAGQIV 170
+ V+ D +++L G+ V
Sbjct: 188 MELVEELCDRVLLLNKGRAV 207
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 43.1 bits (102), Expect = 2e-05
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
+T+L + +L + +G+ VA++G SG GKST+ LL S GN++ G L L+
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 42.5 bits (100), Expect = 3e-05
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T 66
+IL L + G+ +A++G SG+GKST++A+L D SSG +++ G L +D
Sbjct: 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83
Query: 67 WLRGNVIGLINQEPVLFAT-SVRENIR 92
LR +G + Q +L T + EN+
Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVE 110
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 42.8 bits (101), Expect = 3e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L D + + G+ ++I+G +G+GKST V L++ + SG I I G DL + W
Sbjct: 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-DLLTEENVWD 78
Query: 69 RGNVIGLINQEP 80
+ IG++ Q P
Sbjct: 79 IRHKIGMVFQNP 90
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 42.2 bits (99), Expect = 4e-05
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R T L+D + +P G A+VG +G+GKST+ L F ++SG I+I G +
Sbjct: 17 RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA-- 74
Query: 66 TWLRGNVIGLINQE-------PVLFATSVRENIRYGD------SSVSDEQIEEAA 107
L+ N++ + Q PVL V RYG + D QI AA
Sbjct: 75 --LQKNLVAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTAA 126
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG
transport system. The ABC transporters belonging to
the YhbG family are similar to members of the
Mj1267_LivG family, which is involved in the transport
of branched-chain amino acids. The genes yhbG and yhbN
are located in a single operon and may function
together in cell envelope during biogenesis. YhbG is
the putative ATP-binding cassette component and YhbN is
the putative periplasmic-binding protein. Depletion of
each gene product leads to growth arrest, irreversible
cell damage and loss of viability in E. coli. The YhbG
homolog (NtrA) is essential in Rhizobium meliloti, a
symbiotic nitrogen-fixing bacterium.
Length = 232
Score = 42.1 bits (100), Expect = 4e-05
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGT 66
+ ++ +L + G+ V ++G +G GK+T ++ SG I + G D+ L
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR 72
Query: 67 WLRGNVIGLINQEPVLFAT-SVRENIR 92
G IG + QE +F +V ENI
Sbjct: 73 ARLG--IGYLPQEASIFRKLTVEENIL 97
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.9 bits (98), Expect = 5e-05
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 16/112 (14%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
+KD ++ P AI+G SG GKST++ + R +D+ +G I + D+ + +D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 65 GTWLRGNVIGLINQEPVLF-ATSVRENIRYG-------DSSVSDEQIEEAAK 108
+R V G++ Q+P F A S+ +N+ G + S +DE +E + K
Sbjct: 80 PVSIRRRV-GMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLK 130
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 42.5 bits (100), Expect = 6e-05
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R ++ +L + I GQKV +VG +G GKST++ALL+ G+ T G
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYT--------FPG 62
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAH 113
W + +NQE E + GD Q+E AN
Sbjct: 63 NW----QLAWVNQETPALPQPALEYVIDGDREY--RQLEAQLHDANER 104
Score = 30.5 bits (69), Expect = 0.50
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS-GVDL 60
+ IL L + G ++ ++G +G GKST++ LL SG I ++ G+ L
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL 377
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 41.8 bits (98), Expect = 7e-05
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK+ NL IP + AI+G SG GKST + L + N+ ++G ++ + L+G
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVP-NVKLTG-EMNYNGSNILKGK 85
Query: 72 V--------IGLINQEPVLFATSVRENIRYG 94
V IG++ Q+ F S+ +N+ YG
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYG 116
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD
family. Members of this protein family have two copies
of the ABC transporter ATP-binding cassette, but are
found outside the common ABC transporter operon
structure that features integral membrane permease
proteins and substrate-binding proteins encoded next to
the ATP-binding cassette (ABC domain) protein. The
member protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 41.8 bits (99), Expect = 9e-05
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TW 67
K ILKD +L G K+ ++G +G GKST++ + ++GVD K +G
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRI-------------MAGVD-KEFNGEAR 63
Query: 68 LRGNV-IGLINQEPVLFAT-SVRENIRYG 94
+ +G + QEP L T +VREN+ G
Sbjct: 64 PAPGIKVGYLPQEPQLDPTKTVRENVEEG 92
Score = 32.6 bits (75), Expect = 0.085
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI-SGVDLKHLD 64
K ++ D + ++P G V ++G +G GKST+ ++ SG I I V L ++D
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVD 391
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 41.2 bits (97), Expect = 9e-05
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
IL + + + AG+ I G SG GKST++ ++ +SG + G D+ L
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 69 RGNVIGLINQEPVLFATSVRENI 91
R V Q P LF +V +N+
Sbjct: 80 RQQV-SYCAQTPTLFGDTVYDNL 101
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 41.2 bits (96), Expect = 9e-05
Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
L + N++I A++G SG GKST + L R D+ GN+ G ++ + D
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLANAHGFIS 117
LR IG++ Q P F S+ +NI YG D DE +E++ K
Sbjct: 83 ILELRRK-IGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLK--------- 132
Query: 118 EFPSGALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQNADLI 161
AL NE +KL AL + + L IA L+ N L+
Sbjct: 133 ---KSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILM 174
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 41.3 bits (97), Expect = 1e-04
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL---KHLDG 65
+T+L +L + G+ VAI+G SG+GK+T++ + +G I + + + + L
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 66 T-----WLRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA 110
LR +V G + Q LF +V ENI G V E EEA A
Sbjct: 76 QKGLIRQLRQHV-GFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA 125
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 41.1 bits (96), Expect = 1e-04
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
T+ ++ + IP G AI+G +G GKST++ L R + G++ + G ++H
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQH 73
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 41.2 bits (96), Expect = 1e-04
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 40/199 (20%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L + I G+ V+I+G +G+GKST L++ ++ G + I G L + W
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT-AENVWNLRR 81
Query: 72 VIGLINQEP--VLFATSVRENIRYG--DSSVSDEQ----IEEAAKLANAHGFISEFPSGA 123
IG++ Q P +V +++ +G + + E+ ++EA N F + P+
Sbjct: 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141
Query: 124 LDNESEKLVQAAL-----------ESAC----KGR----------------TVLMIAHRL 152
+ +++ A + ES GR TVL I H L
Sbjct: 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201
Query: 153 STVQNADLIVVLQAGQIVE 171
++D I+V++AG+I++
Sbjct: 202 DEAASSDRILVMKAGEIIK 220
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 40.8 bits (96), Expect = 1e-04
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV 58
K L+D NL + +G+ + ++G SG GK+T++ L+ F G+IT+ G
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK 63
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 41.2 bits (97), Expect = 1e-04
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
I KD NL I G+ V VG SG GKST++ ++ D++SG++ I + + RG
Sbjct: 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA-ERG 76
Query: 71 NVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA 107
+G++ Q L+ SV EN+ +G ++++ + A
Sbjct: 77 --VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the
cells of red pigments, which are synthesized from
guanine, and brown pigments, which are synthesized from
tryptophan. The pigment precursors are encoded by the
white, brown, and scarlet genes, respectively. Evidence
from genetic and biochemical studies suggest that the
White and Brown proteins function as heterodimers to
import guanine, while the White and Scarlet proteins
function to import tryptophan. However, a recent study
also suggests that White may be involved in the
transport of a metabolite, such as 3-hydroxykynurenine,
across intracellular membranes. Mammalian ABC
transporters belonging to the White subfamily (ABCG1,
ABCG5, and ABCG8) have been shown to be involved in the
regulation of lipid-trafficking mechanisms in
macrophages, hepatocytes, and intestinal mucosa cells.
ABCG1 (ABC8), the human homolog of the Drosophila white
gene is induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 40.7 bits (96), Expect = 1e-04
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVD 59
N + IL D +L + +GQ +AI+GSSG+GK+T I +E +SG I +G
Sbjct: 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG-TTSGQILFNGQP 73
Query: 60 LK 61
K
Sbjct: 74 RK 75
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 40.7 bits (95), Expect = 1e-04
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL 63
K + D ++ I A++G SG GKST + + R D+ S G I G+++ L
Sbjct: 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI--L 91
Query: 64 DGTWLRGNV------IGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEA 106
D NV IG++ Q+P F S+ NI + SV DE +EE+
Sbjct: 92 DS---NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEES 144
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 41.0 bits (96), Expect = 1e-04
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF 45
+L++ NL I G VA+VG SG GK+T++ ++
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 40.6 bits (95), Expect = 2e-04
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 41/202 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L + N P ++A++G +G GKST+ +SG++ I G + + +
Sbjct: 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76
Query: 69 RGNVIGLINQEP--VLFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP 120
R +GL+ Q P +F+ +V ++I +G D ++ A + P
Sbjct: 77 R-KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP 135
Query: 121 -------------SGALDNESEKLV----QAALE--------------SACKGRTVLMIA 149
+G + E + LV A L+ G TV+
Sbjct: 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST 195
Query: 150 HRLSTV-QNADLIVVLQAGQIV 170
H+L V + AD I V+ G+IV
Sbjct: 196 HQLDLVPEMADYIYVMDKGRIV 217
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 41.0 bits (96), Expect = 2e-04
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 34/188 (18%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG----------VDLK 61
+++ + + G+ +AIVG SG+GKS L R + + G + ++L
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 62 HLDGTWL---RGNVIGLINQEPV-----LFAT--SVRENIRYGDSSVSDEQIEEAAKLAN 111
+ RG + +I QEP+ +F + E+IR + +E + EA ++ +
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151
Query: 112 ------AHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
A +S +P L + V A+ +C R ++IA +T L V +Q
Sbjct: 152 QVRIPEAQTILSRYPH-QLSGGMRQRVMIAMALSC--RPAVLIADEPTTA----LDVTIQ 204
Query: 166 AGQIVEML 173
A QI++++
Sbjct: 205 A-QILQLI 211
Score = 32.5 bits (74), Expect = 0.097
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG--NVIGLINQE 79
G+ +++VG SG+GKST L R + G I +G + L L+ I I Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 80 P 80
P
Sbjct: 410 P 410
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 40.6 bits (95), Expect = 2e-04
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
+K + + GQ +AI+G +G+GKST+ +L + +SG I I+ L D ++ R
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF-RSK 87
Query: 72 VIGLINQEP 80
I +I Q+P
Sbjct: 88 RIRMIFQDP 96
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 41.0 bits (97), Expect = 2e-04
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
+ K+ NL + AG+++AI+G +G GK+T++ L
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTL 365
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 40.6 bits (95), Expect = 2e-04
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LK+ NL+I G+ +AI GS+G+GK++++ L+ + S G I SG +W+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE 105
I +E ++F S E RY S V Q+EE
Sbjct: 112 GTI----KENIIFGVSYDE-YRY-KSVVKACQLEE 140
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 40.5 bits (95), Expect = 2e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
F LR GQ +AI+G +G+GKST+ +L + +SG + I L D ++ R I
Sbjct: 34 FTLR--EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY-RSQRIR 90
Query: 75 LINQEPVLFATSVRENIRYG 94
+I Q+P +TS+ R
Sbjct: 91 MIFQDP---STSLNPRQRIS 107
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 40.4 bits (94), Expect = 2e-04
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 49/203 (24%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST-IVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
L + N+RIP GQ IVG G GKS+ ++A+L + G + S + R
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL-EGKVHWSNKNESEPSFEATRS 75
Query: 71 N---VIGLINQEPVLFATSVRENIRYGD-------SSVSD--------------EQIEEA 106
+ Q+P L +V ENI +G +V+D +Q E
Sbjct: 76 RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 107 AKLANAHG-------------------FISEFPSGALD-NESEKLVQAALESACKG--RT 144
+ N G F+ + P ALD + S+ L+Q + + RT
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDD-PFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 145 VLMIAHRLSTVQNADLIVVLQAG 167
++++ H+L + +AD I+ ++ G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 40.9 bits (96), Expect = 2e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG--VDLKHLD 64
NL I G+ V ++G +G+GKST+ LL Y SG I + G V + L+
Sbjct: 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLE 393
Score = 26.7 bits (59), Expect = 7.6
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 142 GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQ 175
G+T+ I+H +AD ++ ++ GQ+ E+ G+
Sbjct: 499 GKTIFAISHDDHYFIHADRLLEMRNGQLSELTGE 532
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 40.5 bits (95), Expect = 2e-04
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LKD + IP GQ +IVG +G+GKSTI L+ V SG I + + + LR +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 72 VIGLINQEP 80
IG++ Q P
Sbjct: 85 -IGIVFQNP 92
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 40.1 bits (94), Expect = 2e-04
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 49/200 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+T + + +L +P ++G +G GKST++ ++ +SG I G W
Sbjct: 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WT 65
Query: 69 RGNV--IGLINQEPVLFAT-SVREN--IRYGDSSVSDEQIEEAAKLAN--------AHGF 115
R ++ IG + + P L+ + REN + + D +I+E + + A F
Sbjct: 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQF 125
Query: 116 ---------------------ISEFPSGALD----NESEKLVQAALESACKGRTVLMIAH 150
I + P+ LD E +L+++ E +G TV++ +H
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSH 182
Query: 151 RLSTVQN-ADLIVVLQAGQI 169
LS VQ AD I ++ G +
Sbjct: 183 ILSEVQQLADHIGIISEGVL 202
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 40.2 bits (94), Expect = 2e-04
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY---DVSSGNITISGVDLKHLDG 65
K L D + IP G A++G +G+GKSTI L+ D + IT+ G+ L
Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA-KT 78
Query: 66 TWLRGNVIGLINQEP 80
W +G++ Q P
Sbjct: 79 VWDIREKVGIVFQNP 93
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.0 bits (93), Expect = 3e-04
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--K 61
K +K+ NL + G A++G SG GK+T + + R +D++ +G I + G D+
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76
Query: 62 HLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYG 94
+D +R V G++ Q+P F T SV +N+ G
Sbjct: 77 RVDPVAMRRRV-GMVFQKPNPFPTMSVFDNVVAG 109
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 40.4 bits (95), Expect = 3e-04
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY--DVSSGNIT-ISGVDLKH 62
LK+ + IP G I G SG+GKST++ AL R G T I G L+H
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALANRLNGAKTVPGRYTSIEG--LEH 681
Query: 63 LDGTWLRGNVIGLINQEPV 81
LD VI I+Q P+
Sbjct: 682 LD------KVI-HIDQSPI 693
Score = 31.9 bits (73), Expect = 0.18
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTI 38
LK+ ++ IP + V I G SG+GKS++
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
Score = 28.1 bits (63), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIV 170
KG TV++I H L ++ AD I+ L G +V
Sbjct: 881 KGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVV 916
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 213
Score = 39.4 bits (92), Expect = 3e-04
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTW 67
+L + N I G+ V ++G SG GKST+++ + +G + ++ L L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 68 LRGNVIGLINQEPVLFAT-SVRENI 91
+ IG++ Q+ +LF SV +N+
Sbjct: 77 RQ---IGILFQDALLFPHLSVGQNL 98
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. In members of
Carb_Monos family the single hydrophobic gene product
forms a homodimer, while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it
is assumed that two copies of the ABC domains are
present in the assembled transporter.
Length = 182
Score = 39.3 bits (93), Expect = 3e-04
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
++D + + AG+ V I G GNG++ + L +SG IT+ G +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 72 VIGLI----NQEPVLFATSVRENI 91
I + +E ++ SV ENI
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENI 99
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 39.6 bits (92), Expect = 3e-04
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
++D ++ I + +G SG GKST++ L R D+ G++ G D+ K +D
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYG 94
+R IG++ Q+P F+ S+ +N+ +G
Sbjct: 84 PVVVR-RYIGMVFQQPNPFSMSIFDNVAFG 112
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 39.6 bits (93), Expect = 3e-04
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLD 64
ILK NL I G+ AI+G +G+GKST+ ++ Y + G+I G + L+
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 39.6 bits (92), Expect = 3e-04
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 26/167 (15%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
+ IL+ ++ I + AI+G SG GKST + L R ++ S G + ++ +
Sbjct: 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79
Query: 62 HLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVS-------DEQIEEAAKLANAHG 114
++ LR V +++ +P LF SV +N+ YG V D+ +E A K A+
Sbjct: 80 RVNLNRLRRQV-SMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDAD--- 135
Query: 115 FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI 161
D K+ ++AL+ + + L IA L+ L+
Sbjct: 136 --------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLM 174
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 39.4 bits (92), Expect = 4e-04
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--------SGNITISG 57
RR + IL+D +LRI G+ A++G +G GKST++ L +G++T++G
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 58 VDLKHLDGTWLRGNVIGLINQEPVLFATSVRENI---------RYGDSSVSDEQIEEAA- 107
L +D L L FA S RE + R G + D +I A
Sbjct: 71 EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQAL 130
Query: 108 KLANA 112
LA A
Sbjct: 131 ALAGA 135
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to
NatA. NatA is the ATPase component of a bacterial
ABC-type Na+ transport system called NatAB, which
catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled to proton or K+ uptake.
NatB possess six putative membrane spanning regions at
its C-terminus. In B. subtilis, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the proton-motive force across the membrane. The
closest sequence similarity to NatA is exhibited by
DrrA of the two-component daunorubicin- and
doxorubicin-efflux system. Hence, the functional NatAB
is presumably assembled with two copies of the single
ATP-binding protein and the single integral membrane
protein.
Length = 236
Score = 39.6 bits (93), Expect = 4e-04
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
R LK + I G+ V +G +G GK+T + +L +SG + ++G
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 39.6 bits (93), Expect = 4e-04
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 61/220 (27%)
Query: 5 LRRLKTILKDF---------NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
L +LK I K F L + G+ +A+VG +G GKST++ +L Y +G+I
Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63
Query: 56 SG--VDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENI--------------------- 91
G V + G IG+I+QE L ++ ENI
Sbjct: 64 LGKEVTFNGPKSSQEAG--IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE 121
Query: 92 ----------------RYGDSSVSDEQIEEAAKLANAHGF-----ISEFPSGAL-DNESE 129
G+ S+ ++Q+ E AK F I + P+ AL D E+E
Sbjct: 122 ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK---VLSFESKVIIMDEPTDALTDTETE 178
Query: 130 KLVQAALESACKGRTVLMIAHRLSTV-QNADLIVVLQAGQ 168
L + E +GR ++ I+HRL + + D + V + GQ
Sbjct: 179 SLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 39.3 bits (92), Expect = 5e-04
Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 43/200 (21%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K + + + +P G+ ++G +G GK+T ++ + + G IT +G L
Sbjct: 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI---- 70
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRY---------GDSSVSDEQIEEAAKLANAHG---- 114
N IG + +E L+ +V + ++Y + + E ++
Sbjct: 71 -KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIK 129
Query: 115 -----------FIS------EF-----PSGALDNESEKLV-QAALESACKGRTVLMIAHR 151
FIS E P LD + +L+ A E +G T++ +HR
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189
Query: 152 LSTVQN-ADLIVVLQAGQIV 170
+ V+ D +++L+ GQ V
Sbjct: 190 MEHVEELCDRLLMLKKGQTV 209
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein
PhnL. Members of this family are the PhnL protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a
transporter per se.
Length = 224
Score = 38.9 bits (91), Expect = 5e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
+LK+ +L + AG+ VA+ G SG GKST++ L Y SG I +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 39.2 bits (92), Expect = 6e-04
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
K ++KDF+ ++ G K+A++G +G GK+T++ L+
Sbjct: 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLM 365
Score = 28.4 bits (64), Expect = 2.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER 44
+L + L I ++V +VG +G GKST++ +L
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.7 bits (90), Expect = 6e-04
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHLDG 65
+L NL IP A++G SG+GKST++ + R ++ SG + + G D+ +D
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 66 TWLRGNVIGLINQEPVLFAT-SVRENIRYG 94
LR V ++ Q P S+ EN+ G
Sbjct: 78 IELRRRV-QMVFQIPNPIPNLSIFENVALG 106
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 39.1 bits (92), Expect = 7e-04
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 1 MAGNLRRLKTILKDF---------NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS- 50
M L +K I K F +L++ AG+ V++ G +G GKST++ +L Y +
Sbjct: 1 MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY 60
Query: 51 -GNITISGVDLK--HLDGTWLRGNVIGLINQEPVLFAT-SVRENI 91
G I G +L+ ++ T G I I+QE L SV ENI
Sbjct: 61 EGEIIFEGEELQASNIRDTERAGIAI--IHQELALVKELSVLENI 103
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 38.6 bits (90), Expect = 7e-04
Identities = 60/222 (27%), Positives = 85/222 (38%), Gaps = 81/222 (36%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
LK NL I G+ ++++G SG GKST++ L ISG+ G L G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNL-------------ISGLAQPTSGGVILEGK 47
Query: 72 VIGLINQEP-----VLFAT-------SVRENIRYGDSSVS------------DEQIE--- 104
I EP V+F +VRENI V +E I
Sbjct: 48 QI----TEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVG 103
Query: 105 --EAA-------------KLANAHG-------FISEFPSGALD-----NESEKLVQAALE 137
EAA ++A A + + P GALD N E+L+Q E
Sbjct: 104 LTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163
Query: 138 SACKGRTVLMIAHRL-STVQNADLIVVL------QAGQIVEM 172
TVLM+ H + + +D +V+L GQI+E+
Sbjct: 164 HRV---TVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 38.7 bits (90), Expect = 8e-04
Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 40/200 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
T L + + AG+ + +VG +G GKST++A + SG+I +G L+ T L
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELA 71
Query: 70 GNVIGLINQEPVLFATSVRENIR-YGDSSVSDEQIEEAAKL------------------- 109
+ L Q+ FA V + + E + + A
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 131
Query: 110 ---------------ANAHG--FISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHR 151
AN G + + P +LD + + L + C+ G ++M +H
Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
Query: 152 LS-TVQNADLIVVLQAGQIV 170
L+ T+++A +L+ G+++
Sbjct: 192 LNHTLRHAHRAWLLKRGKLL 211
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 38.5 bits (90), Expect = 8e-04
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
++ + R+ G+ ++G +G GK+T + +L +SG T++G D+ + +R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 72 VIGLINQEPVL-FATSVRENIR-----YG-DSSVSDEQIEEA 106
IG++ Q+ + + EN+ YG + E+I+E
Sbjct: 75 -IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDEL 115
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 38.9 bits (92), Expect = 8e-04
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 17/86 (19%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TW 67
K ILKD +L G K+ ++G +G GKST++ + ++GVD K +G
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRI-------------MAGVD-KEFEGEAR 65
Query: 68 LR-GNVIGLINQEPVLFAT-SVRENI 91
G +G + QEP L +VREN+
Sbjct: 66 PAPGIKVGYLPQEPQLDPEKTVRENV 91
Score = 29.3 bits (67), Expect = 1.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST 37
+ ++ D + +P G V I+G +G GKST
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKST 365
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
++++ + + + G+ ++G +G GK+T + +L + +G T+ G D+
Sbjct: 12 RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK 71
Query: 63 LDGTWLRGNVIGLINQEPVLFA-TSVRENIRY 93
R +G ++ L+ + REN+ Y
Sbjct: 72 EPAEARRR--LGFVSDSTGLYDRLTARENLEY 101
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 38.5 bits (91), Expect = 0.001
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 24/94 (25%)
Query: 2 AGNLRRLKTI------LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY--- 46
GN + LK LK+ ++ IP G+ + G SG+GKST++ AL +
Sbjct: 609 KGNGKFLKLKGARENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAK 668
Query: 47 DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP 80
V + I G L+HLD VI I+Q P
Sbjct: 669 KVPGKHKEIEG--LEHLD------KVID-IDQSP 693
Score = 30.0 bits (69), Expect = 0.62
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST 37
LK+ +L IP + V G SG+GKS+
Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSS 41
Score = 26.6 bits (60), Expect = 8.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIV-----EMLGQHEN 178
KG TV++I H L ++ AD I+ L G+IV E + + E
Sbjct: 882 KGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 325
Score = 38.1 bits (89), Expect = 0.001
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
+D + IP G+ V +G++G GKST + +L +SG + ++G D
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 38.2 bits (88), Expect = 0.001
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 45/203 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL----KHLDGTW 67
L D +L + G A++G +G+GKST++ L + G +T+ + + K +
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 68 LRGNVIGLINQEP--VLFATSVRENIRYGDSS--VSDEQIEE-AAKLANAHGFISEF--- 119
+R V G++ Q P LF +V +++ +G + + E+ E+ AA+ G EF
Sbjct: 82 VRKKV-GVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK 140
Query: 120 ------------------------------PSGALDNESEKLVQAALESACK-GRTVLMI 148
P+ LD ++ + ES + G+TV+++
Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 149 AHRLSTVQN-ADLIVVLQAGQIV 170
H + V + AD + +L+ G I+
Sbjct: 201 THLMDDVADYADYVYLLEKGHII 223
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 37.0 bits (85), Expect = 0.001
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 28/151 (18%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
G+ + IVG G+GK+T+ L R G + +DG + V+ + V
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------IDGEDILEEVLDQLLLIIV 54
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHG----FISEFPSGALDNESEKLVQAALE 137
S + ++ A LA + E + LD E E L+ E
Sbjct: 55 G---------GKKASGSGELRLRLALALARKLKPDVLILDE-ITSLLDAEQEALLLLLEE 104
Query: 138 SA-------CKGRTVLMIAHRLSTVQNADLI 161
K TV++ + + A L
Sbjct: 105 LRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 38.3 bits (89), Expect = 0.001
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 58/222 (26%)
Query: 5 LRRLKTILKDF---------NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNI 53
L +K I+K F +L + G+ V + G +G GKST++ +L Y + G I
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 54 TISGVDLK--HLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYGDS-------------- 96
SG LK ++ T G VI I+QE L SV ENI G+
Sbjct: 61 YWSGSPLKASNIRDTERAGIVI--IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY 118
Query: 97 -------------------SVSD-----EQIEEAAKLAN--AHGFISEFPSGAL-DNESE 129
V D +Q+ E AK N A I + PS +L + E+E
Sbjct: 119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178
Query: 130 KLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
L+ + G + I+H+L+ V+ D I V++ GQ V
Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 37.7 bits (88), Expect = 0.001
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
+RL D N +PA A+ G SG+GK++++ ++ G I ++G + L
Sbjct: 8 QRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG---RVLVD 64
Query: 66 TWLRGNV------IGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLANAHGFISE 118
+ IG + Q+ LF +VR N+RYG Q ++ L +
Sbjct: 65 AEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDR 124
Query: 119 FPS 121
+P
Sbjct: 125 YPG 127
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine
transporter subunit; Provisional.
Length = 257
Score = 37.3 bits (86), Expect = 0.002
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61
+LK +L+ AG ++I+GSSG+GKST + + S G+I ++G +
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 37.3 bits (86), Expect = 0.002
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-VDLKHLDGTWLRGNV------IGL 75
+ AI+G SG GKST + L R ++ G + + G VD + R N+ IG+
Sbjct: 34 KVTAIIGPSGCGKSTFIKTLNRISEL-EGPVKVEGVVDFFGQNIYDPRININRLRRQIGM 92
Query: 76 INQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
+ Q P F S+ EN+ YG + DE +E A K A
Sbjct: 93 VFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGA 134
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 37.6 bits (88), Expect = 0.002
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ ++ IP G + G SG+GKST++
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLI 644
Score = 32.6 bits (75), Expect = 0.12
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ +L IP + V I G SG+GKS++
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLA 43
Score = 26.8 bits (60), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIV 170
KG TV++I H L ++ AD I+ L G+IV
Sbjct: 874 KGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIV 909
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 37.2 bits (87), Expect = 0.002
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 18/79 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY--DVSSGNIT-ISGVDLKH 62
LK+ ++ IP G + G SG+GKS+++ AL R + GN I G L+H
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEG--LEH 68
Query: 63 LDGTWLRGNVIGLINQEPV 81
+D VI +I+Q P+
Sbjct: 69 ID------KVI-VIDQSPI 80
Score = 27.6 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIV 170
KG TV++I H L ++ AD I+ L GQ+V
Sbjct: 221 KGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVV 256
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 37.6 bits (87), Expect = 0.002
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 33/193 (17%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV--------DLKHL 63
L +LRI G V IVG +G GKST+ L Y G I + G D + L
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417
Query: 64 DGT-----WLRGNVIG--------LINQEPVLFATSVRENIRYGD---SSVSDEQIEEAA 107
L ++IG L N + L + + ++ D S+ + +
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 108 KLANAHGFISEFPSGALDNES-------EKLVQAALESACK--GRTVLMIAHRLSTVQNA 158
+LA ++ + P D + ++ L K G+T+++I+H + A
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537
Query: 159 DLIVVLQAGQIVE 171
D I+ L AG IV+
Sbjct: 538 DQIIKLAAGCIVK 550
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 36.7 bits (85), Expect = 0.003
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHL 63
++K +L+IP A++G SG GKST++ R +++ G + + G ++ +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 64 DGTWLRGNVIGLINQEPVLFA-TSVRENIRYG 94
D +R V G++ Q P F ++ +N+ G
Sbjct: 79 DPIEVRREV-GMVFQYPNPFPHLTIYDNVAIG 109
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 36.2 bits (84), Expect = 0.004
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L++ +L + AG+ V + G SG+GKST++ L Y G I + +H +G W
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV-----RH-EGEW--- 76
Query: 71 NVIGLINQEP 80
+ L+ EP
Sbjct: 77 --VDLVTAEP 84
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 36.6 bits (85), Expect = 0.004
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
LK + LR+ G+ + +VG SG GKST + + G + G DL +
Sbjct: 34 LKAV-DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDE 92
Query: 68 LRG--NVIGLINQEP 80
R + I +I Q+P
Sbjct: 93 WRAVRSDIQMIFQDP 107
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 36.2 bits (84), Expect = 0.004
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD-LKHLDGTWLRG 70
+ N ++ G+ +G +G GK+T + +L +SG ++G D ++ +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK--VR- 65
Query: 71 NVIGLINQEPVLF-ATSVRENIR-----YGDS-SVSDEQIEEAAKL 109
IG++ Q + + REN+ YG ++E+ EE +L
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLEL 111
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 36.2 bits (84), Expect = 0.004
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61
+LK +L+ AG ++I+GSSG+GKST + + S+G+I ++G +++
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIR 71
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 36.4 bits (84), Expect = 0.005
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
T+L +L + G V +VG +G GK+T++ + ++G + ++G D++ L
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 70 GNVIGLINQEPVLFATSVRENIRYG 94
V + + F VR+ + G
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMG 101
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 36.2 bits (83), Expect = 0.005
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VS----SGNITISGVDLKHL 63
KT+L ++ PA +++G +G+GK+T + L R D VS SG++ + G + +
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 64 DGTWLRGNVIGLINQEPVLFATSVRENIRYG 94
+G++ Q P F S+ +N+ G
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG 124
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 35.6 bits (82), Expect = 0.007
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 43/204 (21%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ I+ ++ P G ++G +G+GKST++ LL +G + ++GVDL L
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR-A 72
Query: 69 RGNVIGLINQE-PVLFATSVRENIRYG--------------DSSVSDEQIE--EAAKLAN 111
R + L+ Q+ +VR+ + G D++V D + E + LA+
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD 132
Query: 112 ----------------AHGFISE-------FPSGALDNESEKLVQAAL-ESACKGRTVLM 147
A E P+ LD ++ A + E A G TV+
Sbjct: 133 RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVA 192
Query: 148 IAHRLS-TVQNADLIVVLQAGQIV 170
H L+ D +VVL G++V
Sbjct: 193 ALHDLNLAASYCDHVVVLDGGRVV 216
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 36.0 bits (83), Expect = 0.008
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKS-----TIVALLERF 45
LKD + +P G+ + G SG+GKS T+V +E F
Sbjct: 611 LKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEF 649
Score = 30.2 bits (68), Expect = 0.75
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY 46
+++ N+ P VAI G SG+GK+++ LLE FY
Sbjct: 1506 IQNLNVSAPLHSLVAISGVSGSGKTSL--LLEGFY 1538
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 35.4 bits (82), Expect = 0.008
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
L D L P G+ + ++G SG GKS+++ +L SG + I+G
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 35.3 bits (82), Expect = 0.009
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG------VDLKHL 63
T+ D + + AG+ + I G +G GK+T++ +L +G + G + H
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 64 DGTWLRGNVIGLINQEPVLFATSVRENIRYGDS---SVSDEQIEEAAKLANAHGFI 116
+L G+ G+ + L + EN+ + S + I EA G
Sbjct: 76 ALLYL-GHQPGI---KTEL---TALENLHFWQRFHGSGNAATIWEALAQVGLAGLE 124
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 35.3 bits (82), Expect = 0.009
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
G+ +A+VG SG GKST+ LL + G + G DL D
Sbjct: 40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 35.3 bits (82), Expect = 0.011
Identities = 15/22 (68%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALL 42
G+ VA++GSSG GKST+V ALL
Sbjct: 195 GKTVALLGSSGVGKSTLVNALL 216
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 35.4 bits (82), Expect = 0.013
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD----VSSGNITISGV 58
R K +LK+ + G+ +A++GSSG GK+T++ L F SG++ ++G+
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGM 90
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 35.1 bits (81), Expect = 0.014
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERFYDVSSGNIT--ISGVDLKHLDGTWLRGNVIGLINQ 78
G A++G+SG GK+T++ L ER V++G IT V+ + LD ++ R IG + Q
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAER---VTTGVITGGDRLVNGRPLDSSFQR--SIGYVQQ 843
Query: 79 EPVLFATS-VRENIRY 93
+ + TS VRE++R+
Sbjct: 844 QDLHLPTSTVRESLRF 859
Score = 28.2 bits (63), Expect = 3.2
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDL---- 60
ILK + I G+ ++G G+G ST I + + F+ G IT G+
Sbjct: 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK 133
Query: 61 KHLDGTWLRGNVI 73
KH RG+V+
Sbjct: 134 KH-----YRGDVV 141
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.1 bits (81), Expect = 0.014
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 39/188 (20%)
Query: 18 RIPAGQKVAIVGSSGNGKS----TIVALLERFYDVSSGNITISGVDLKHLDGTWLR---G 70
+ G+ V IVG SG+GKS I+ L++ V + + +G DL+ + R G
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88
Query: 71 NVIGLINQEPVLFATS----------VRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP 120
+ +I Q+P+ TS + E I+ + + A L N G P
Sbjct: 89 AEVAMIFQDPM---TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD--P 143
Query: 121 SGALDNESEKL-------VQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM- 172
+ LD +L V A+ AC+ + L+IA +T L V +QA QI+E+
Sbjct: 144 ASRLDVYPHQLSGGMSQRVMIAMAIACRPK--LLIADEPTTA----LDVTIQA-QIIELL 196
Query: 173 --LGQHEN 178
L Q EN
Sbjct: 197 LELQQKEN 204
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 34.9 bits (80), Expect = 0.015
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L + +L I G+ V ++G++G GK+T++ L +SG I G D+ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 72 VIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEE 105
+ ++ + +F+ +V EN+ G +Q +E
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE 115
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 34.3 bits (79), Expect = 0.015
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
K+AI+G SG+GKST+ L + Y+
Sbjct: 2 KIAIIGYSGSGKSTLARKLSQHYN 25
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 34.7 bits (80), Expect = 0.016
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 47/193 (24%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKS-TIVALLERFYDVSSGNITISG---------VD 59
T + D N + AG+ + IVG SG+GKS T AL+ + + N I G ++
Sbjct: 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM----GLLAANGRIGGSATFNGREILN 85
Query: 60 LKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGD--------------SSVSDEQIE- 104
L + LR I +I Q+P+ TS+ +R G+ + +E +
Sbjct: 86 LPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM 142
Query: 105 -EAAKLANAHGFISEFP---SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADL 160
+A K+ A + +P SG + + V A+ C+ + L+IA +T L
Sbjct: 143 LDAVKMPEARKRMKMYPHEFSGGM----RQRVMIAMALLCRPK--LLIADEPTTA----L 192
Query: 161 IVVLQAGQIVEML 173
V +QA QI+ +L
Sbjct: 193 DVTVQA-QIMTLL 204
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 34.5 bits (80), Expect = 0.016
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 2 AGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISG 57
G R ILKDF+ + G+ V ++G G+G ST + E V G+I +G
Sbjct: 13 TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-EGDIHYNG 71
Query: 58 VDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY 93
+ K + G +I +++E V F T +VRE + +
Sbjct: 72 IPYKEFAEKY-PGEII-YVSEEDVHFPTLTVRETLDF 106
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 34.4 bits (79), Expect = 0.018
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD------- 64
L D L P G+ + ++G SG GKS+++ +L SG + I+G H D
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG---NHFDFSKTPSD 74
Query: 65 --GTWLRGNVIGLINQEPVLFA-TSVRENIRYGDSSV---SDEQIEEAA----------- 107
LR NV G++ Q+ L+ +V+EN+ V S +Q A
Sbjct: 75 KAIRDLRRNV-GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133
Query: 108 ---------------KLANAHGFISE-----F--PSGALDNE-SEKLVQAALESACKGRT 144
++A A + E F P+ ALD E + ++V E A G T
Sbjct: 134 YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193
Query: 145 VLMIAHRLSTVQN-ADLIVVLQAGQIVEM 172
+++ H + + A +V ++ G IVE
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHIVEQ 222
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 34.2 bits (79), Expect = 0.025
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
NL + + V+++G +G GK+T+ L FY + G I + G +H++G
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG---QHIEG 71
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 34.1 bits (79), Expect = 0.027
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L D + AGQ A++G +G GKST++ +L Y +G+I I G +++ T
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 72 VIGLINQE----PVLFATSVRENIRYG 94
+ +I QE P + +V EN+ G
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLG 103
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 34.2 bits (79), Expect = 0.030
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
NL I G+ + ++G +G+GKST+ LL Y SG I + G
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Score = 26.9 bits (60), Expect = 7.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQ 175
G+T+ I+H +AD ++ ++ GQ+ E+ G+
Sbjct: 499 MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGE 533
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 33.6 bits (77), Expect = 0.033
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
+ I + +L +P G+ AI+G SG GK+T++ L+
Sbjct: 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLI 53
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 32.7 bits (74), Expect = 0.033
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
+ I G G+GKST+ L
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLG 24
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 33.6 bits (77), Expect = 0.034
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT 54
F+L G+ + IVG SG+GK+T++ + +G +T
Sbjct: 26 SFDLY--PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 33.7 bits (77), Expect = 0.036
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 41/202 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K ++ D + I G+ ++G +G GKSTI +L G IT+ G + L
Sbjct: 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP--SRARL 74
Query: 69 RGNVIGLINQEPVL-FATSVRENI----RY------------------------GDSSVS 99
IG++ Q L +VREN+ RY D V+
Sbjct: 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA 134
Query: 100 D------EQIEEAAKLAN-AHGFISEFPSGALDNESEKLVQAALES-ACKGRTVLMIAHR 151
++ A L N I + P+ LD + L+ L S +G+T+L+ H
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194
Query: 152 LSTVQN-ADLIVVLQAG-QIVE 171
+ + D + VL++G +I E
Sbjct: 195 MEEAERLCDRLCVLESGRKIAE 216
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein
PhnK. Members of this family are the PhnK protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and
the adjacent-encoded PhnL resemble transporter
ATP-binding proteins but are suggested, based on
mutatgenesis studies, to be part of this complex rather
than part of a transporter per se [Central intermediary
metabolism, Phosphorus compounds].
Length = 253
Score = 33.3 bits (76), Expect = 0.043
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT 54
+D + + G+ + IVG SG+GKST++ L G T
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 33.3 bits (77), Expect = 0.054
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-VDLKHLDGTWL---- 68
NL +PA AI G SG GK++++ + G I ++G V G L
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQ 102
R IG + Q+ LF VR N+RYG + Q
Sbjct: 76 RR--IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQ 108
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 33.3 bits (76), Expect = 0.055
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 41/202 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K ++ + + +G+ ++G +G GKSTI ++ +G IT+ GV + L
Sbjct: 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP--ARARL 111
Query: 69 RGNVIGLINQEPVL-FATSVRENI----RY------------------------GDSSVS 99
IG++ Q L +VREN+ RY D+ VS
Sbjct: 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS 171
Query: 100 D------EQIEEAAKLAN-AHGFISEFPSGALDNESEKLVQAALES-ACKGRTVLMIAHR 151
D ++ A L N I + P+ LD + L+ L S +G+T+L+ H
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231
Query: 152 LSTVQN-ADLIVVLQAG-QIVE 171
+ + D + VL+AG +I E
Sbjct: 232 MEEAERLCDRLCVLEAGRKIAE 253
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 33.0 bits (75), Expect = 0.057
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR- 69
+L+ + +PAG + + GS+G GK+T++ L+ + G I +K T+ +
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 70 ----GNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSGAL 124
G+ G+ P L ++REN Y S I E +L + I ++P G L
Sbjct: 76 LCFVGHRSGI---NPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEHLI-DYPCGLL 128
Query: 125 DNESEKLV 132
+ ++ V
Sbjct: 129 SSGQKRQV 136
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 33.4 bits (76), Expect = 0.060
Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 41/193 (21%)
Query: 15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK-HLDGTWLRGNVI 73
N+ Q A +G +G GK+T +++L +SG + + G D++ +LD +
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV---RQSL 1005
Query: 74 GLINQEPVLF-ATSVRENIRY--------------------GDSSVSDEQIEEAA----- 107
G+ Q +LF +V E+I + D+ + ++ EEA
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGG 1065
Query: 108 ---KLANAHGFISEF-------PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN 157
KL+ A F+ + P+ +D S + + L GRT++M H +
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125
Query: 158 -ADLIVVLQAGQI 169
D I ++ G++
Sbjct: 1126 LGDRIAIISQGRL 1138
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 33.2 bits (76), Expect = 0.063
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+++ + +P+G + I G +G GKS++ +L + V G +T
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKP------------AK 514
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSS-------VSDEQIEE 105
+ + Q P + ++R+ I Y DSS +SD+ +E+
Sbjct: 515 GKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQ 556
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter
ATP-binding protein; Provisional.
Length = 241
Score = 32.6 bits (74), Expect = 0.076
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD--LKHLDGT 66
+ +++D +L + +G+ V ++G +G GK+T ++ +GNI I D L L
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75
Query: 67 WLRGNVIGLINQEPVLFAT-SVRENI 91
RG IG + QE +F SV +N+
Sbjct: 76 ARRG--IGYLPQEASIFRRLSVYDNL 99
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a
wide variety of presumed DNA repair proteins.
Length = 154
Score = 31.9 bits (73), Expect = 0.083
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 1 MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVA 40
+ L+ ++K +P G + G+ G GKST+
Sbjct: 15 LDAPPPPLRWLVKGL---LPRGGLTLLAGAPGTGKSTLAL 51
>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35). Rab35 is one of
several Rab proteins to be found to participate in the
regulation of osteoclast cells in rats. In addition,
Rab35 has been identified as a protein that interacts
with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK)
in human cells. Overexpression of NPM-ALK is a key
oncogenic event in some anaplastic large-cell
lymphomas; since Rab35 interacts with N|PM-ALK, it may
provide a target for cancer treatments. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins.
Length = 199
Score = 32.1 bits (73), Expect = 0.088
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVS-SGN-ITISGVDLK 61
K+ I+G SG GKS+ LL RF D + SG+ IT GVD K
Sbjct: 8 KLLIIGDSGVGKSS---LLLRFADNTFSGSYITTIGVDFK 44
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 32.2 bits (73), Expect = 0.096
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 43/182 (23%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---LKHLDGTWLRG 70
F++R G+ + G SG GKST++ L+ S+G I SG D LK+ + +LR
Sbjct: 22 TFHMR--PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79
Query: 71 NVIGLINQE---------------PVLFATSVRENIRYGDSSVSD--------------- 100
IG+I Q+ P++ A + ++IR S+ D
Sbjct: 80 Q-IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQL 138
Query: 101 -----EQIEEAAKLANAHG-FISEFPSGALDNE-SEKLVQAALESACKGRTVLMIAHRLS 153
+++ A + N +++ P+G LD+ SE +++ E G TVLM H +
Sbjct: 139 SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198
Query: 154 TV 155
+
Sbjct: 199 LI 200
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 32.0 bits (73), Expect = 0.11
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
+ + + + AG+ + + G +G GK+T++ +L SG + +G L R
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 70 GNVIGLINQEPVLFATSVRENIRY--GDSSVSDEQIEEAAKLANAHGF 115
N++ L + + S EN+ + + IE+A GF
Sbjct: 74 -NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF 120
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 31.9 bits (72), Expect = 0.12
Identities = 40/207 (19%), Positives = 84/207 (40%), Gaps = 47/207 (22%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-----VDLKHLDGT 66
L + +L + ++G++G+GKST++ L +G TI G +LK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYAIPANLKKIKEV 85
Query: 67 WLRGNVIGLINQEP--VLFATSVRENIRYGDSSVSDEQIEEAAKLA-------------- 110
IGL+ Q P LF ++ ++I +G ++ + + E K+
Sbjct: 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK 145
Query: 111 ----------------------NAHGFISEFPSGALDNESEKLVQAALESACK--GRTVL 146
+ + + + P+G LD + E+ E K + ++
Sbjct: 146 RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205
Query: 147 MIAHRLSTV-QNADLIVVLQAGQIVEM 172
M+ H + V + AD ++V+ G+++ +
Sbjct: 206 MVTHNMDQVLRIADEVIVMHEGKVISI 232
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 31.2 bits (71), Expect = 0.14
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEP 80
V +VG +GK+T++ L Y G +KHLD G + L +EP
Sbjct: 3 VLVVGPKDSGKTTLIRKLLN-YLKRRG---YRVAVVKHLDHGQGEIDKPGKIAALSIEEP 58
Query: 81 VLFATSVREN 90
+
Sbjct: 59 ADGPEGFHQE 68
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 226
Score = 31.8 bits (73), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ ++ IP + V I G SG+GKS++
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLA 38
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 31.2 bits (71), Expect = 0.15
Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 22/164 (13%)
Query: 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
L R + ++ G I G +G+GKSTI+ + +
Sbjct: 4 LGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTIL------------DAIGLALGGAQSA 51
Query: 65 GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG------FISE 118
G G I R + G+ +S A LA A + E
Sbjct: 52 TRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELS----ALALILALASLKPRPLYILDE 107
Query: 119 FPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIV 162
G + + L +A LE KG V++I H + AD ++
Sbjct: 108 IDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI 151
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 31.4 bits (72), Expect = 0.15
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
+ + + + AG+ + + G +G+GK+T++ L+ ++G I + G D
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase,
contains alpha, beta, and gamma chains. In older
literature, the complex of alpha, beta, and gamma
chains was termed component C, while this single chain
protein was termed methyl coenzyme M reductase system
component A2 [Energy metabolism, Methanogenesis].
Length = 520
Score = 31.7 bits (72), Expect = 0.18
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
K +LK+ + I G+ + I+G SG GKS ++ +L
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVL 46
Score = 31.3 bits (71), Expect = 0.25
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 115 FISEFPSGALDNESEKLVQAALESACKGRTVLMI--AHRLSTVQN-ADLIVVLQAGQIVE 171
F+++ P+G LD ++ KLV ALE A K + M+ +H +++ +D + L+ G+I E
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
Score = 27.8 bits (62), Expect = 3.4
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI----SGVDLKHLDGTWLRGNV 72
L + G+ IVG+SG GK+T+ ++ + +SG + + VD+ G RG
Sbjct: 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP-GPDGRGRA 363
Query: 73 ---IGLINQEPVLFA-TSVRENI 91
IG+++QE L+ +V +N+
Sbjct: 364 KRYIGILHQEYDLYPHRTVLDNL 386
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 31.8 bits (72), Expect = 0.19
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L + + +P G+ V I+G +G+GKST+ L+ + G + I G + L G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 72 VIGLINQE 79
+ G+ N E
Sbjct: 100 LTGIENIE 107
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 31.0 bits (70), Expect = 0.26
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 13 KDFNLRIPAGQ-KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS-GVDLKHL 63
K+ N P GQ +V +VG SG GKS++V L+ + ++ TI V +KH+
Sbjct: 11 KEQNGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHI 63
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 31.0 bits (71), Expect = 0.26
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT 54
G+ + IVG SG+GK+T++ L +G +
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
>gnl|CDD|227622 COG5306, COG5306, Uncharacterized conserved protein [Function
unknown].
Length = 621
Score = 31.4 bits (71), Expect = 0.26
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 48 VSSGNITISGVDL----KHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSV 98
S+G+ T S VD+ G + R L Q P++ E+IRYG++ +
Sbjct: 128 SSNGSYTYSFVDITLDSAMTSGRYHRLIAGPLFGQRPIILGNGAGESIRYGETHI 182
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 30.8 bits (70), Expect = 0.27
Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 49/207 (23%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKS-TIVALLERF---YDVSSGNITISGVDLKHLDGT 66
++ +L + G+ +A+VG SG+GKS T A L ++G + + G +
Sbjct: 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA-- 75
Query: 67 WLRGNVIGLINQEP-------VLFATSVRENIRYGDSSVSDEQIE---EAAKLANAHGFI 116
LRG I I Q P T RE D + EA L NA +
Sbjct: 76 -LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVL 134
Query: 117 SEFP---SG----------ALDNES------------EKLVQAA----LES--ACKGRTV 145
+P SG AL E+ + + QA LES + +
Sbjct: 135 KLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGM 194
Query: 146 LMIAHRLSTVQN-ADLIVVLQAGQIVE 171
L++ H + V AD + V+ G+IVE
Sbjct: 195 LLVTHDMGVVARLADDVAVMSHGRIVE 221
>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible
oxidation of CO to CO2. CODH contains a
nickel-iron-sulfur cluster (C-center) and an
iron-sulfur cluster (B-center). CO oxidation occurs at
the C-center. Three accessory proteins encoded by
cooCTJ genes are involved in nickel incorporation into
a nickel site. CooC functions as a nickel insertase
that mobilizes nickel to apoCODH using energy released
from ATP hydrolysis. CooC is a homodimer and has NTPase
activities. Mutation at the P-loop abolishs its
function.
Length = 116
Score = 29.9 bits (68), Expect = 0.27
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
K+AI G G GK+TI ALL R+
Sbjct: 1 KIAITGKGGVGKTTIAALLARY 22
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 30.8 bits (70), Expect = 0.35
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
+ IL + + ++ G+ IVG +G GKST+++L+
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306
Score = 27.3 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 16 NLRIPAGQKVAIVGSSGNGKS 36
+L + AG A VG++G+GKS
Sbjct: 23 SLTLNAGDSWAFVGANGSGKS 43
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 31.0 bits (70), Expect = 0.37
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI 53
+ K+ N I ++A+VG +G GKSTI+ L+ SSG +
Sbjct: 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 30.5 bits (69), Expect = 0.41
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG----VDLKHLDGTWL- 68
+ +L I G+ ++G SG+GKST++ + VS G++ + VD+ + D L
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 69 --RGNVIGLINQEPVLFA-TSVRENIRYG 94
R + + ++ Q+ L +V EN+ +G
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFG 130
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 30.5 bits (69), Expect = 0.43
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
L + NL++ A++G +G GKST++ L Y SG+I G ++ N
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 72 VIGLINQE 79
I +++QE
Sbjct: 74 GISMVHQE 81
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 30.0 bits (68), Expect = 0.45
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQE 79
+K+ ++GS G+GKST+ L G + + HLD + + N G+ +E
Sbjct: 1 MKKIILIGSGGSGKSTLARQL--------GEKL--NIPVHHLDALFWKPNWEGVPKEE 48
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 30.5 bits (69), Expect = 0.48
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 75 LINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPS 121
L++ P L V+ YG+ VSD +I EA K G + E+ S
Sbjct: 264 LVSTRPFLLDYMVKALSEYGECIVVSDNEIVEAWKELAKKGLLVEYSS 311
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.9 bits (68), Expect = 0.50
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 15/52 (28%)
Query: 23 QKVAIVGSSGNGKSTIVALL-ERFYDVSSGNITISGVDLKHLD-GTWLRGNV 72
++ I+G G GKST+ L ++ L HLD G LR +
Sbjct: 1 MRILILGPPGAGKSTLAKKLAKKL-------------GLPHLDTGDILRAAI 39
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 30.3 bits (69), Expect = 0.50
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 15 FNLRIPAGQKVAIVGSSGNGKSTIVA----LLERFYDVSSGNITISGVDLKHLDGTWL-- 68
+ + AG+ + +VG +G GKST++A LL SG+I +G L+ L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----GSGSIQFAGQPLEAWSAAELAR 69
Query: 69 -RGNVIGLINQEPVLFATSV 87
R L Q+ FA V
Sbjct: 70 HRAY---LSQQQTPPFAMPV 86
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 30.3 bits (69), Expect = 0.51
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 22 GQKVAIV---GSSGNGKSTIVALLER 44
GQK A V G SG+GKSTI L+ER
Sbjct: 457 GQKPATVWFTGLSGSGKSTIANLVER 482
>gnl|CDD|226166 COG3640, CooC, CO dehydrogenase maturation factor [Cell division
and chromosome partitioning].
Length = 255
Score = 29.9 bits (68), Expect = 0.57
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 24 KVAIVGSSGNGKSTIVALL 42
K+AI G G GK+TI ALL
Sbjct: 2 KIAITGKGGVGKTTIAALL 20
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 29.7 bits (68), Expect = 0.64
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 21 AGQKVAIVGSSGNGKSTIV-ALL 42
G+ +VG SG GKST++ ALL
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALL 106
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 29.4 bits (67), Expect = 0.66
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 24 KVAIVGSSGNGKSTIVALLER 44
++ I G GK+T++ L
Sbjct: 1 RIVITGGPSTGKTTLLEALAA 21
>gnl|CDD|132282 TIGR03238, dnd_assoc_3, DNA phosphorothioation-dependent
restriction protein DptF. A DNA sulfur modification
(phosphorothioation) system, dnd (degradation during
electrophoresis), is sparsely and sporadically
distributed among the bacteria. This protein is one
member of a three-gene restriction enzyme cassette that
depends on DNA phosphorothioation [DNA metabolism,
Restriction/modification].
Length = 504
Score = 29.9 bits (67), Expect = 0.66
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVA 40
L+ IL FN +P+ + + GSSG+GKS I+A
Sbjct: 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is
a multistep ATP-dependent reaction that requires the
UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are
ATPases, with UvrA having two ATP binding sites, which
have the characteristic signature of the family of ABC
proteins, and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 29.6 bits (67), Expect = 0.70
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
L++ ++ IP V + G SG+GKST+V
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV 38
>gnl|CDD|202638 pfam03452, Anp1, Anp1. The members of this family (Anp1, Van1
and Mnn9) are membrane proteins required for proper
Golgi function. These proteins co-localise within the
cis Golgi, and that they are physically associated in
two distinct complexes.
Length = 270
Score = 29.5 bits (67), Expect = 0.73
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 59 DLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGD 95
+ H D L G N+E VL T +R+ R+
Sbjct: 6 TVSHYDLNKLTGTADARANKERVLILTPLRDAARFLP 42
>gnl|CDD|183904 PRK13231, PRK13231, nitrogenase reductase-like protein; Reviewed.
Length = 264
Score = 29.8 bits (67), Expect = 0.74
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61
+K+AI G G GKST V+ + Y + + + G D K
Sbjct: 3 KKIAIYGKGGIGKSTTVSNMAAAYS-NDHRVLVIGCDPK 40
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 29.6 bits (67), Expect = 1.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 21 AGQKVAIVGSSGNGKSTIVALLER 44
AGQ++ I SG GKST++A+L R
Sbjct: 164 AGQRIGIFAGSGVGKSTLLAMLAR 187
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.4 bits (64), Expect = 1.0
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 27 IVGSSGNGKSTIV-----ALLERFYDVSSGNITISGVDLKHLDG 65
+ G G GKST+ ALL+ ++ D DG
Sbjct: 3 LYGPPGCGKSTLAKYLARALLKHLGLPKKDSVYSRNPDDDFWDG 46
>gnl|CDD|133133 cd06602, GH31_MGAM_SI_GAA, This family includes the following three
closely related glycosyl hydrolase family 31 (GH31)
enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase
(SI), and lysosomal acid alpha-glucosidase (GAA), also
known as acid-maltase. MGAM is one of the two enzymes
responsible for catalyzing the last glucose-releasing
step in starch digestion. SI is implicated in the
digestion of dietary starch and major disaccharides such
as sucrose and isomaltose, while GAA degrades glycogen
in the lysosome, cleaving both alpha-1,4 and alpha-1,6
glucosidic linkages. MGAM and SI are anchored to
small-intestinal brush-border epithelial cells. The
absence of SI from the brush border membrane or its
malfunction is associated with malabsorption disorders
such as congenital sucrase-isomaltase deficiency (CSID).
The domain architectures of MGAM and SI include two
tandem GH31 catalytic domains, an N-terminal domain
found near the membrane-bound end, and a C-terminal
luminal domain. Both of the tandem GH31 domains of MGAM
and SI are included in this family. The domain
architecture of GAA includes an N-terminal TFF (trefoil
factor family) domain in addition to the GH31 catalytic
domain. Deficient GAA expression causes pompe disease,
an autosomal recessive genetic disorder also known as
glycogen storage disease type II (GSDII).
Length = 339
Score = 29.1 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 71 NVIGLINQEPVLFATSVRE------NIRY 93
N IG I QEP ++ SV + NIRY
Sbjct: 276 NDIGAIPQEPYVWGPSVADAARKALNIRY 304
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 29.0 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERF---YDVSS 50
G + + G SG GKST+V ALLE + VS+
Sbjct: 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSA 36
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 29.0 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
R + + + + AG+ + + G +G GK+T++ +L V SG I I G
Sbjct: 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG 72
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 29.0 bits (65), Expect = 1.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 144 TVLMIAHRLSTV-QNADLIVVLQAGQIVEMLGQHE 177
T+L+I+H L + Q AD I VL GQ VE E
Sbjct: 211 TILLISHDLQMLSQWADKINVLYCGQTVETAPSKE 245
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 29.1 bits (66), Expect = 1.2
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 25 VAIVGSSGNGKSTIV-ALL------ERFYDVSSGNITIS 56
+A+VG SG+GK+T+ ALL +R V GN T+S
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAIDRLGRVEDGN-TVS 39
>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast
homolog Ypt1. Rab1/Ypt1 subfamily. Rab1 is found in
every eukaryote and is a key regulatory component for
the transport of vesicles from the ER to the Golgi
apparatus. Studies on mutations of Ypt1, the yeast
homolog of Rab1, showed that this protein is necessary
for the budding of vesicles of the ER as well as for
their transport to, and fusion with, the Golgi
apparatus. GTPase activating proteins (GAPs) interact
with GTP-bound Rab and accelerate the hydrolysis of GTP
to GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation
of the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs),
which facilitate Rab recycling by masking C-terminal
lipid binding and promoting cytosolic localization.
Most Rab GTPases contain a lipid modification site at
the C-terminus, with sequence motifs CC, CXC, or CCX.
Lipid binding is essential for membrane attachment, a
key feature of most Rab proteins. Due to the presence
of truncated sequences in this CD, the lipid
modification site is not available for annotation.
Length = 166
Score = 28.8 bits (65), Expect = 1.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLK 61
K+ ++G SG GKS LL RF D + IS GVD K
Sbjct: 4 KLLLIGDSGVGKS---CLLLRFADDTYTESYISTIGVDFK 40
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 29.2 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 15 FNLRIP-AGQKVAIVGSSGNGKSTIVALL 42
+ L P G+ V I+G +G GKST + +L
Sbjct: 92 YRLPTPRPGKVVGILGPNGIGKSTALKIL 120
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 25 VAIVGSSGNGKSTIVALL 42
AI+GS+G+GKS VA+L
Sbjct: 26 FAILGSTGSGKSNTVAVL 43
>gnl|CDD|239950 cd04513, Glycosylasparaginase, Glycosylasparaginase catalyzes the
hydrolysis of the glycosylamide bond of
asparagine-linked glycoproteins. This enzyme is an
amidase located inside lysosomes. Mutation of this gene
in humans causes a genetic disorder known as
aspartylglycosaminuria (AGU). The glycosylasparaginase
precursor undergoes autoproteolysis through an N-O or
N-S acyl rearrangement of the peptide bond, which leads
to the cleavage of a peptide bond between an Asp and a
Thr. This proteolysis step generates an exposed
N-terminal catalytic threonine and activates the enzyme.
Length = 263
Score = 28.7 bits (65), Expect = 1.3
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 104 EEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIA 149
E A + A + GF E L S K + LE C T+ MIA
Sbjct: 102 EGATRFAVSMGFPEE---NLLTERSRKAWKKWLEENCNHDTIGMIA 144
>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 25 VAIVGSSGNGKSTIVA-----LLERFYDVSSGN 52
V +G++G+GK+T+ L E+ YDV+ N
Sbjct: 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 28.8 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
L +L I G+ VA++G SG+GKST++
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLL 47
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 29.1 bits (65), Expect = 1.4
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 50/207 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALLERFYDVS-SGNITISGVDLK----- 61
+TIL G+ +A++G SG+GKST++ AL R + +G I +
Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK 140
Query: 62 -------------HLDGTWLRGNVI---------GLINQEPVLFATSVR--------ENI 91
HL +R ++ L QE +L A SV EN
Sbjct: 141 RTGFVTQDDILYPHLT---VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197
Query: 92 RYGDSSVSDEQIEEAAKLANAHG-------FISEFPSGALDNESE-KLVQAALESACKGR 143
G+S + E +++ AH I + P+ LD + +LV A KG+
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257
Query: 144 TVLMIAHRLST--VQNADLIVVLQAGQ 168
T++ H+ S+ Q D ++VL G+
Sbjct: 258 TIVTSMHQPSSRVYQMFDSVLVLSEGR 284
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 28.3 bits (64), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 21 AGQKVAIVGSSGNGKSTIVALL 42
G+ + G SG GKST++ L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNAL 55
>gnl|CDD|236151 PRK08099, PRK08099, bifunctional DNA-binding transcriptional
repressor/ NMN adenylyltransferase; Provisional.
Length = 399
Score = 28.9 bits (65), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 23 QKVAIVGSSGNGKSTIVALLERFYDVSS 50
+ VAI+G +GKST+V L ++ +S
Sbjct: 220 RTVAILGGESSGKSTLVNKLANIFNTTS 247
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 28.6 bits (65), Expect = 1.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 22 GQKVAIVGSSGNGKSTIVA 40
GQ++ I G SG GK+ ++
Sbjct: 15 GQRIGIFGGSGTGKTVLLG 33
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 15 FNLRIPA-GQKVAIVGSSGNGKSTIVALL 42
L +P GQ + +VG +G GKST + +L
Sbjct: 18 HRLPVPREGQVLGLVGPNGIGKSTALKIL 46
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 28.8 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLER 44
D L I GQK+ I SG GKST++ ++ +
Sbjct: 148 DSMLTIGIGQKIGIFAGSGVGKSTLLGMIAK 178
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 28.9 bits (65), Expect = 1.6
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV----ALL 42
L + ++ I G+ +AI+G +G+GK+T + ALL
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL 57
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 28.5 bits (64), Expect = 1.7
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 77 NQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQA 134
N E L R + + +E +E LA G+ E S KLV+
Sbjct: 251 NWERALEL--FRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEK 306
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 28.6 bits (65), Expect = 1.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 12 LKDFNLRIPAGQK-----VAIVGSSGNGKSTIVALL 42
L DF+L + G+ + IVG +G GK+T LL
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385
Score = 28.2 bits (64), Expect = 2.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 15 FNLRIP-AGQKVAIVGSSGNGKSTIVALL 42
+ L IP G+ I+G +G GK+T V +L
Sbjct: 91 YGLPIPKEGKVTGILGPNGIGKTTAVKIL 119
>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3). RabL3
(Rab-like3) subfamily. RabL3s are novel proteins that
have high sequence similarity with Rab family members,
but display features that are distinct from Rabs, and
have been termed Rab-like. As in other Rab-like
proteins, RabL3 lacks a prenylation site at the
C-terminus. The specific function of RabL3 remains
unknown.
Length = 204
Score = 28.3 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS-GVDLKHLD 64
KV ++G SG GKS++V LL + + + + T+ VD++H
Sbjct: 2 KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHT 43
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 28.6 bits (65), Expect = 2.0
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 23/96 (23%)
Query: 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT----WLRGNVIGL 75
PAG+ A+ ++ GK VA++ER Y G T H GT LR V+ L
Sbjct: 15 PAGEGAAM-QAAKLGKR--VAVIER-YRNVGGGCT-------HT-GTIPSKALREAVLRL 62
Query: 76 I--NQEPVLFATSVRENIRYGD-----SSVSDEQIE 104
I NQ P+ + V+ I + D V ++Q+E
Sbjct: 63 IGFNQNPLYSSYRVKLRITFADLLARADHVINKQVE 98
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase.
Members of this protein family are the bacterial
polynucleotide kinase-phosphatase (Pnkp) whose genes
occur paired with genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis
is that the combination of Pnkp (RNA repair) and Hen1
(RNA modification) serves to first repair RNA damage
from ribotoxins and then perform a modification that
prevents the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 28.4 bits (64), Expect = 2.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 16 NLRIPAGQKVAIVGSSGNGKST 37
+ IP V +VG+SG+GKST
Sbjct: 2 KITIPELSLVVLVGASGSGKST 23
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 28.5 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 22 GQKVAIVGSSGNGKSTIVALLER 44
GQ+V I SG GKST++ ++ R
Sbjct: 158 GQRVGIFAGSGVGKSTLMGMIAR 180
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 433
Score = 28.5 bits (64), Expect = 2.2
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVAL----LERFYD--VSSGNITISGVDLKHLDG 65
+ LR+ VAI G+ NGK+T +L L+ GNI +++ +G
Sbjct: 94 ELFLRLVPLPVVAITGT--NGKTTTTSLLYHLLKAAGLKAFLGGNIGTPALEVLDQEG 149
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 26.5 bits (59), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 25 VAIVGSSGNGKSTIVALLE 43
+AI G SG+GKST+ L
Sbjct: 2 IAITGGSGSGKSTVAKKLA 20
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 26.4 bits (59), Expect = 2.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 25 VAIVGSSGNGKSTIV 39
+ G SG+GKST++
Sbjct: 24 TLLTGPSGSGKSTLI 38
>gnl|CDD|219411 pfam07434, CblD, CblD like pilus biogenesis initiator. This family
consists of several minor pilin proteins including CblD
from Burkholderia cepacia which is known to CblD be the
initiator of pilus biogenesis. The family also contains
a variety of Enterobacterial minor pilin proteins.
Length = 360
Score = 28.2 bits (63), Expect = 2.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVD 59
L IPAG+ + + + G K+T+V L+R+ D + NIT+ D
Sbjct: 151 SLKLYIPAGE-LNKLPTGGTWKATLVLNLKRWGDDTPLGTYTVNITVDLTD 200
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 28.2 bits (64), Expect = 2.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERF 45
GQ++ I SG GKST++ ++ R+
Sbjct: 137 GQRMGIFAGSGVGKSTLLGMMARY 160
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 27.5 bits (62), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITI 55
+AI G +G+GKST+ LL + + +G I
Sbjct: 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRT 35
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 28.3 bits (63), Expect = 2.7
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 18 RIPAGQKVAIVGSSGNGKSTIVALLE 43
++P+G+ V ++G G+GK+T++A L+
Sbjct: 41 KLPSGKNVLVLGEDGSGKTTLIAKLQ 66
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 27.5 bits (61), Expect = 2.8
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
L RL L+ R V + G SG GK++++ L V++G + + +
Sbjct: 9 LERLLDALRR--ARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAF 66
Query: 65 GTWLR 69
LR
Sbjct: 67 SQALR 71
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 28.1 bits (63), Expect = 2.8
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 77 NQEPVLFATSVRENIRYGDS-SVSDEQIEEAAK-LANAHGFISEFPSGA 123
N E LFA +RE G + +VSDE+I EA K LA G + E P A
Sbjct: 301 NWERALFA--LRE--SGGLAVAVSDEEILEAIKLLAEREGILIE-PHSA 344
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 27.5 bits (62), Expect = 2.8
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 27 IVGSSGNGKSTIV-ALLERFYD 47
+ G SG GKST++ LLE F
Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDP 25
>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated
Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like
families. RERG (Ras-related and Estrogen- Regulated
Growth inhibitor) and Ras-like 11 are members of a novel
subfamily of Ras that were identified based on their
behavior in breast and prostate tumors, respectively.
RERG expression was decreased or lost in a significant
fraction of primary human breast tumors that lack
estrogen receptor and are correlated with poor clinical
prognosis. Elevated RERG expression correlated with
favorable patient outcome in a breast tumor subtype that
is positive for estrogen receptor expression. In
contrast to most Ras proteins, RERG overexpression
inhibited the growth of breast tumor cells in vitro and
in vivo. RasL11 was found to be ubiquitously expressed
in human tissue, but down-regulated in prostate tumors.
Both RERG and RasL11 lack the C-terminal CaaX
prenylation motif, where a = an aliphatic amino acid and
X = any amino acid, and are localized primarily in the
cytoplasm. Both are believed to have tumor suppressor
activity.
Length = 166
Score = 27.6 bits (62), Expect = 2.9
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF--------YDVSSGNITISGVDLKHLDGTWLRGNVIGL 75
K+A++G+SG GKS AL RF Y+ + ++ V +DG + +
Sbjct: 1 KIAVLGASGVGKS---ALTVRFLTKRFIGEYEPNLESLYSRQV---TIDGEQVSLEIQDT 54
Query: 76 INQEPVLFATSVRENIRYGDS-----SVSD 100
Q+ S+ ++R+ D S++D
Sbjct: 55 PGQQQNEDPESLERSLRWADGFVLVYSITD 84
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 27.8 bits (62), Expect = 2.9
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 116 ISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 166
I E ++ + +KL +E K + V++ H LS + D ++VL+A
Sbjct: 40 IGEEKDDEMEIDFDKL-AYFIEEEFKEKNVVLDGH-LSHLLPVDYVIVLRA 88
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 28.0 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 17 LRIPAGQKVAIVGSSGNGKSTIVALLER 44
L I GQ+V I SG GKST++ ++ R
Sbjct: 132 LTIGKGQRVGIFAGSGVGKSTLLGMIAR 159
>gnl|CDD|217108 pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein
C (OsmC) is a stress -induced protein found in E. Coli.
This family also contains a organic hydroperoxide
detoxification protein that has a novel pattern of
oxidative stress regulation.
Length = 99
Score = 26.9 bits (60), Expect = 3.1
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 57 GVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFI 116
G+DL L+ V G + E L T +R + +E++E +LA + +
Sbjct: 32 GIDLDSLEVE-----VEGERDPEGFLGFTEIRLRVEVKSGDADEEKLERLLELAEKYCPV 86
Query: 117 S 117
S
Sbjct: 87 S 87
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of
Shikimate dehydrogenase. Shikimate dehydrogenase (DH)
is an amino acid DH family member. Shikimate pathway
links metabolism of carbohydrates to de novo
biosynthesis of aromatic amino acids, quinones and
folate. It is essential in plants, bacteria, and fungi
but absent in mammals, thus making enzymes involved in
this pathway ideal targets for broad spectrum
antibiotics and herbicides. Shikimate DH catalyzes the
reduction of 3-hydroshikimate to shikimate using the
cofactor NADH. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily
and include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 27.2 bits (61), Expect = 3.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
G+KV I+G+ G ++ AL E I I
Sbjct: 13 AGIELKGKKVLILGAGGAARAVAYALAELGA----AKIVI 48
>gnl|CDD|201603 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD
binding domain. This Pfam entry contains the following
members: N-acetyl-glutamine semialdehyde dehydrogenase
(AgrC) Aspartate-semialdehyde dehydrogenase.
Length = 121
Score = 27.1 bits (61), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 24 KVAIVGSSGNGKSTIVALLER 44
KVAIVG++G ++ LL
Sbjct: 1 KVAIVGATGYVGQELLRLLAE 21
>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3. The
M-Ras/R-Ras-like subfamily contains R-Ras2/TC21,
M-Ras/R-Ras3, and related members of the Ras family.
M-Ras is expressed in lympho-hematopoetic cells. It
interacts with some of the known Ras effectors, but
appears to also have its own effectors. Expression of
mutated M-Ras leads to transformation of several types
of cell lines, including hematopoietic cells, mammary
epithelial cells, and fibroblasts. Overexpression of
M-Ras is observed in carcinomas from breast, uterus,
thyroid, stomach, colon, kidney, lung, and rectum. In
addition, expression of a constitutively active M-Ras
mutant in murine bone marrow induces a malignant mast
cell leukemia that is distinct from the monocytic
leukemia induced by H-Ras. TC21, along with H-Ras, has
been shown to regulate the branching morphogenesis of
ureteric bud cell branching in mice. Most Ras proteins
contain a lipid modification site at the C-terminus,
with a typical sequence motif CaaX, where a = an
aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Ras proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 164
Score = 27.4 bits (61), Expect = 3.3
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV 81
K+ +VG G GKS + + Y V+ + TI K +DG W R +++ QE
Sbjct: 4 KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEE- 62
Query: 82 LFATSVRENIRYGDS-----SVSDEQ-IEEAAKL 109
F+ + +R G+ SV+D EE K
Sbjct: 63 -FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKF 95
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 28.0 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 6 RRLKTILKDFNLRIP--AGQKVAIVGSSGNGKSTIVALLER 44
L T ++ + +P GQ++ I SG GKST++++L R
Sbjct: 122 EPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLAR 162
>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.
Length = 250
Score = 27.5 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 67 WLRGNVIGLINQEPVLFATSV 87
WL N N EPVLF TS+
Sbjct: 127 WLEDNPETSSNDEPVLFDTSI 147
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 27.6 bits (62), Expect = 3.4
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 37/111 (33%)
Query: 22 GQKVAIV---GSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNV---IGL 75
GQK A++ G SG+GKSTI LE + G + LDG +R + +G
Sbjct: 20 GQKGAVIWFTGLSGSGKSTIANALEE-------KLFAKGYHVYLLDGDNVRHGLNRDLG- 71
Query: 76 INQEPVLFATSVR-ENIRYGDSSVSDEQIEEAAKLANAHG------FISEF 119
F+ R ENIR ++ E AKL G FIS +
Sbjct: 72 -------FSREDRIENIR---------RVAEVAKLLADAGLIVIVAFISPY 106
>gnl|CDD|99858 cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate
synthases Cit1-2_like. Citrate synthases (CS) catalyzes
the condensation of acetyl coenzyme A (AcCoA) with
oxaloacetate (OAA) to form citrate and coenzyme A (CoA),
the first step in the citric acid cycle (TCA or Krebs
cycle). Some CS proteins function as 2-methylcitrate
synthase (2MCS). 2MCS catalyzes the condensation of
propionyl-coenzyme A (PrCoA) and OAA to form
2-methylcitrate and CoA during propionate metabolism.
The overall CS reaction is thought to proceed through
three partial reactions and involves both closed and
open conformational forms of the enzyme: a) the
carbanion or equivalent is generated from AcCoA by base
abstraction of a proton, b) the nucleophilic attack of
this carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and are
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). ScCit1 is a
nuclear-encoded mitochondrial CS with highly specificity
for AcCoA. In addition to its CS function, ScCit1 plays
a part in the construction of the TCA cycle metabolon.
Yeast cells deleted for Cit1 are hyper-susceptible to
apoptosis induced by heat and aging stress. ScCit2 is a
peroxisomal CS involved in the glyoxylate cycle; in
addition to having activity with AcCoA, it may have
activity with PrCoA. Chicken and pig heart CS, two
Arabidopsis thaliana (Ath) CSs, CSY4 and -5, and
Aspergillus niger (An) CS also belong to this group. Ath
CSY4 has a mitochondrial targeting sequence; AthCSY5 has
no identifiable targeting sequence. AnCS encoded by the
citA gene has both an N-terminal mitochondrial import
signal and a C-terminal peroxisiomal target sequence; it
is not known if both these signals are functional in
vivo. This group contains proteins which functions
exclusively as either a CS or a 2MCS, as well as those
with relaxed specificity which have dual functions as
both a CS and a 2MCS.
Length = 427
Score = 27.7 bits (62), Expect = 3.4
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 68 LRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE 105
L G + GL NQE +++ T +++ + G VSDEQ+ E
Sbjct: 263 LAGPLHGLANQEVLVWLTKLQKEV--GK-DVSDEQLRE 297
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 27.6 bits (62), Expect = 3.4
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNITIS-GVDLKHLDGTWLR 69
V I G G GKST+ LE I +D HLD L
Sbjct: 36 VGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLD 81
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 27.8 bits (62), Expect = 3.5
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT------ISGVDLK- 61
+ +L D +L + G+ + ++G +G GKST+V ++ G I I V K
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKL 76
Query: 62 HLDGT 66
+LD T
Sbjct: 77 YLDTT 81
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.2 bits (62), Expect = 3.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 25 VAIVGSSGNGKSTIVALLERFY-----DVSSGNITIS 56
VA+VG G GKST++ L R + D G IT+
Sbjct: 72 VAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV 108
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 27.5 bits (62), Expect = 3.7
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 27 IVGSSGNGKSTIV-ALLERF 45
I G SG GKST+V ALLE
Sbjct: 5 ISGPSGAGKSTLVKALLEED 24
>gnl|CDD|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase;
Provisional.
Length = 625
Score = 27.9 bits (62), Expect = 3.7
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 80 PVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFI 116
PVL NI +G+SS+ +QI A KLA GF+
Sbjct: 327 PVLVHAGPFGNIAHGNSSIVADQI--ALKLAGQDGFV 361
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 27.6 bits (61), Expect = 3.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 22 GQKVAIVGSSGNGKSTIVALL 42
GQ+V I + G GKST++A+L
Sbjct: 155 GQRVGIFSAPGVGKSTLLAML 175
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 27.6 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 22 GQKVAIVGSSGNGKSTIVALLER 44
GQ++ I SG GKST++ ++ R
Sbjct: 163 GQRIGIFAGSGVGKSTLLGMIAR 185
>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13
(Rab8, Rab10, Rab13). Rab8/Sec4/Ypt2 are known or
suspected to be involved in post-Golgi transport to the
plasma membrane. It is likely that these Rabs have
functions that are specific to the mammalian lineage
and have no orthologs in plants. Rab8 modulates
polarized membrane transport through reorganization of
actin and microtubules, induces the formation of new
surface extensions, and has an important role in
directed membrane transport to cell surfaces. The Ypt2
gene of the fission yeast Schizosaccharomyces pombe
encodes a member of the Ypt/Rab family of small
GTP-binding proteins, related in sequence to Sec4p of
Saccharomyces cerevisiae but closer to mammalian Rab8.
GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation
of the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs),
which facilitate Rab recycling by masking C-terminal
lipid binding and promoting cytosolic localization.
Most Rab GTPases contain a lipid modification site at
the C-terminus, with sequence motifs CC, CXC, or CCX.
Lipid binding is essential for membrane attachment, a
key feature of most Rab proteins. Due to the presence
of truncated sequences in this CD, the lipid
modification site is not available for annotation.
Length = 167
Score = 27.2 bits (61), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGN--ITISGVDLK 61
K+ ++G SG GKS LL RF + S I+ G+D K
Sbjct: 5 KLLLIGDSGVGKS---CLLLRFSEDSFNPSFISTIGIDFK 41
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 27.8 bits (62), Expect = 4.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDV 48
KVAI+G+ G ST V LL++ ++V
Sbjct: 77 KVAIIGAGLAGMSTAVELLDQGHEV 101
>gnl|CDD|223510 COG0433, COG0433, HerA helicase [Replication, recombination, and
repair].
Length = 520
Score = 27.7 bits (61), Expect = 4.0
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---- 59
+ + L L + +AI+GS+G+GKS + +L + T+ D
Sbjct: 152 DGGEVPVYLDLNKLVLAR--HIAILGSTGSGKSNLAKVLLE-ELLGKDGATVVIFDPHGE 208
Query: 60 -----LKHLDGTWLRGNVI---GLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAK 108
L DG R ++ GL+ + P + + + E ++
Sbjct: 209 YDLLRLDRADGEGYRIRILEAGGLVPEGPKPYEIADLLGVLRELIESLAEVLDLGLY 265
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 27.4 bits (62), Expect = 4.2
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 27 IVGSSGNGKSTIV-ALLERFYDV 48
+ G SG GKST+V ALLER ++
Sbjct: 10 LSGPSGAGKSTLVKALLERDPNL 32
>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional.
Length = 256
Score = 27.3 bits (61), Expect = 4.3
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 24 KVAIV--GSSGNGKSTIVALLERFYDV 48
+VAIV SG GK+ + L ++ +D+
Sbjct: 3 QVAIVTASDSGIGKACALLLAQQGFDI 29
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 27.3 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 21 AGQKVAIVGSSGNGKSTIVALL 42
AG+ ++G SG GKST++ L
Sbjct: 163 AGKITVLLGQSGVGKSTLINAL 184
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 27.4 bits (61), Expect = 4.5
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 7 RLKTILKDFNLRIPAG-----QKVAIVGSSGNGKSTIVALL 42
+K L +F L + G + + I+G +G GK+T + +L
Sbjct: 5 TMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKML 45
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains
(pfam00036), that may bind calcium. They are also
larger than classical small GTPases. It has been
proposed that they are involved in mitochondrial
homeostasis and apoptosis.
Length = 116
Score = 26.6 bits (59), Expect = 4.6
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 24 KVAIVGSSGNGKSTIVA 40
KV ++G G+GKS++++
Sbjct: 1 KVVVIGDKGSGKSSLLS 17
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 27.3 bits (61), Expect = 4.7
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 25 VAIVGSSGNGKSTIVALLER--FYDVSSGNI 53
+ + G G+GKST+ +L F + + ++
Sbjct: 5 IGLTGGIGSGKSTVAKILAELGFPVIDADDV 35
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 27.3 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 92 RYGDSSVSDEQIEEAAKLANA------HGFISEFPSGALDNESEKLV 132
R +S ++ E+I E AK A +G +SE S A + E +V
Sbjct: 55 RVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIV 101
>gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP,
TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. The p47
GTPase family consists of several highly homologous
proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI,
LRG-47, and IIGP1. They are found in higher eukaryotes
where they play a role in immune resistance against
intracellular pathogens. p47 proteins exist at low
resting levels in mouse cells, but are strongly induced
by Type II interferon (IFN-gamma). ITGP is critical for
resistance to Toxoplasma gondii infection and in
involved in inhibition of Coxsackievirus-B3-induced
apoptosis. TGTP was shown to limit vesicular stomatitis
virus (VSV) infection of fibroblasts in vitro. IRG-47
is involved in resistance to T. gondii infection.
LRG-47 has been implicated in resistance to T. gondii,
Listeria monocytogenes, Leishmania, and mycobacterial
infections. IIGP1 has been shown to localize to the ER
and to the Golgi membranes in IFN-induced cells and
inflamed tissues. In macrophages, IIGP1 interacts with
hook3, a microtubule binding protein that participates
in the organization of the cis-Golgi compartment.
Length = 197
Score = 26.9 bits (60), Expect = 4.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 23 QKVAIVGSSGNGKSTIV 39
+A+ G SG GKS+ +
Sbjct: 2 LNIAVTGESGAGKSSFI 18
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes
phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC
transporter ATP-binding protein (pfam00005) linked to a
type of rapid surface gliding motility found in certain
Bacteroidetes, such as Flavobacterium johnsoniae and
Cytophaga hutchinsonii. Knockouts of GldA abolish the
gliding phenotype. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Bacteroidetes with members
of this protein family appear to have all of the genes
associated with gliding motility.
Length = 301
Score = 27.4 bits (61), Expect = 4.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
G+ V +G +G GKST + ++ + SG++ + G D
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED 65
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 27.1 bits (61), Expect = 4.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNI 53
+ I G G+GK+T+ LL VS+G I
Sbjct: 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEI 34
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 27.1 bits (60), Expect = 5.1
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
L G+ + ++G +G GK+T++ + + G + ++G
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG 41
>gnl|CDD|214863 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD
binding domain. The semialdehyde dehydrogenase family
is found in N-acetyl-glutamine semialdehyde
dehydrogenase (AgrC), which is involved in arginine
biosynthesis, and aspartate-semialdehyde dehydrogenase,
an enzyme involved in the biosynthesis of various amino
acids from aspartate. This family is also found in
yeast and fungal Arg5,6 protein, which is cleaved into
the enzymes N-acety-gamma-glutamyl-phosphate reductase
and acetylglutamate kinase. These are also involved in
arginine biosynthesis. All proteins in this entry
contain a NAD binding region of semialdehyde
dehydrogenase.
Length = 123
Score = 26.4 bits (59), Expect = 5.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 24 KVAIVGSSGNGKSTIVALLER 44
KVAIVG++G ++ LL
Sbjct: 1 KVAIVGATGYVGQELLRLLAE 21
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 27.2 bits (60), Expect = 5.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI 53
D L + GQ++ I +G GKS+++ ++ R + + N+
Sbjct: 156 DGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNV 195
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 27.0 bits (60), Expect = 6.0
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW------LRGNVIGLINQ 78
+ IVG SG+GKST++ LL + + + +D K G + L G VI L
Sbjct: 4 MLIVGPSGSGKSTLLKLL--ALRLLARGGRVIVIDPK---GEYSGLARALGGEVIDLGPG 58
Query: 79 EPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALE 137
+ + + +D + L + L E + AL
Sbjct: 59 SGISLNPLDIFPTGEDAEELEADAHARKLDLLLALLELAALLGRD-LTPREETALDRALR 117
Query: 138 SA 139
+
Sbjct: 118 AL 119
>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase. YqeH is an
essential GTP-binding protein. Depletion of YqeH induces
an excess initiation of DNA replication, suggesting that
it negatively controls initiation of chromosome
replication. The YqeH subfamily is common in eukaryotes
and sporadically present in bacteria with probable
acquisition by plants from chloroplasts. Proteins of the
YqeH family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases.
Length = 191
Score = 26.8 bits (60), Expect = 6.1
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALLERFYDVSSGN-----ITIS 56
++ ++++ V +VG++ GKST++ ALL+ +T+S
Sbjct: 111 VEELIEEIKKLAKYRGDVYVVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVS 165
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 26.9 bits (60), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 22 GQKVAIVGSSGNGKSTIVALLER 44
GQ++ I +G GKST++ ++ R
Sbjct: 145 GQRIGIFAGAGVGKSTLLGMIAR 167
>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 26.7 bits (60), Expect = 6.3
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER 44
L++ G+++ I+G+ G ++ I+ LL+
Sbjct: 113 LEERLGVDLKGKRILILGAGGAARAVILPLLDL 145
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 26.4 bits (59), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 25 VAIVGSSGNGKSTIV-----ALLERFYDVS 49
+ VG SG+GK+T++ AL R V+
Sbjct: 4 IGFVGYSGSGKTTLLEKLIPALSARGLRVA 33
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 26.5 bits (59), Expect = 6.7
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
G V G SG GK+TI L + +G ++ LDG +R N
Sbjct: 4 GVTVWFTGLSGAGKTTIARALAE-------KLREAGYPVEVLDGDAVRTN 46
>gnl|CDD|215692 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 26.3 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
K+ +VG G GKS +LL RF
Sbjct: 1 KLVLVGDGGVGKS---SLLIRF 19
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 27.0 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDV 48
GQ++ I ++G GKST++A L R +V
Sbjct: 162 GQRMGIFAAAGGGKSTLLASLIRSAEV 188
>gnl|CDD|152383 pfam11948, DUF3465, Protein of unknown function (DUF3465). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 131 to 151 amino acids in
length. This protein has a conserved HWTH sequence
motif.
Length = 131
Score = 26.1 bits (58), Expect = 7.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 142 GRTVLMIAHRLSTVQNADL---IVVLQAGQIVEMLGQHENTRK 181
G+T+L +AH N DL I LQ G VE G++E K
Sbjct: 68 GQTLL-VAH------NIDLAPRIPGLQKGDRVEFYGEYEWNPK 103
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 27.0 bits (60), Expect = 7.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 22 GQKVAIVGSSGNGKSTIVALLER 44
GQK+ I SG GKST++ ++ +
Sbjct: 157 GQKLGIFAGSGVGKSTLMGMIVK 179
>gnl|CDD|183905 PRK13233, nifH, nitrogenase reductase; Reviewed.
Length = 275
Score = 26.7 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 23 QKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLK 61
+K+AI G G GKST A + F+D + I G D K
Sbjct: 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHD---KKVFIHGCDPK 42
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 26.6 bits (58), Expect = 7.9
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%)
Query: 26 AIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT 85
I+G +G+GKS ++ L + S +T+ + + +
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEIEE 62
Query: 86 SVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEK 130
+ + IRY + E I E G F EK
Sbjct: 63 FLIDGIRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEK 108
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 26.7 bits (59), Expect = 8.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLK 61
TILKD + I + ++G +GK+T++ L D S SG IT +G L
Sbjct: 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLN 233
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 26.9 bits (60), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYD 47
GQ++ I SG GKS ++++L R D
Sbjct: 158 GQRMGIFAGSGVGKSVLLSMLARNAD 183
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 26.7 bits (59), Expect = 8.1
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-VDLKHLDGTWLRG 70
L D +L+ G + +VG +G+GKST+ ++ + G + +G V + + L G
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAG-LSG 98
Query: 71 NVIGLINQE 79
+ G+ N E
Sbjct: 99 QLTGIENIE 107
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 26.7 bits (59), Expect = 8.2
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
K ++ + + G+ ++G +G GK+T + +L +G+I++ G
Sbjct: 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG 68
>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB;
Provisional.
Length = 378
Score = 26.8 bits (59), Expect = 8.3
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 94 GDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLS 153
GD DE ++EA L + P L EKL+ + K +L+ A R +
Sbjct: 156 GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI-----RSLKPGAILINACRGA 210
Query: 154 TVQNADLIVVLQAGQ 168
V N L+ L GQ
Sbjct: 211 VVDNTALLTCLNEGQ 225
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 26.5 bits (59), Expect = 8.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 25 VAIVGSSGNGKSTIVALL 42
+ I G SG+GK+T+ L
Sbjct: 11 IGIAGGSGSGKTTVAKEL 28
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 26.4 bits (59), Expect = 8.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 97 SVSDEQIEEAAK-LANAHGFISEFPSGA 123
+VSDE+I EA K LA G E S A
Sbjct: 266 AVSDEEILEAQKLLARTEGIFVEPASAA 293
>gnl|CDD|218685 pfam05673, DUF815, Protein of unknown function (DUF815). This
family consists of several bacterial proteins of
unknown function.
Length = 248
Score = 26.3 bits (59), Expect = 8.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 GSSGNGKSTIV-ALLERFYDVSSGNITISGVDLKHL 63
G+ G GKS++V ALL + D I + DL L
Sbjct: 60 GARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGDL 95
>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. CaSR provides feedback control of
extracellular calcium homeostasis by responding
sensitively to acute fluctuations in extracellular
ionized Ca2+ concentration. This ligand-binding domain
has homology to the bacterial leucine-isoleucine-valine
binding protein (LIVBP) and a leucine binding protein
(LBP). CaSR is widely expressed in mammalian tissues and
is active in tissues that are not directly involved in
extracellular calcium homeostasis. Moreover, CaSR
responds to aromatic, aliphatic, and polar amino acids,
but not to positively charged or branched chain amino
acids, which suggests that changes in plasma amino acid
levels are likely to modulate whole body calcium
metabolism. Additionally, the family C GPCRs includes at
least two receptors with broad-spectrum amino
acid-sensing properties: GPRC6A which recognizes basic
and various aliphatic amino acids, its gold-fish homolog
the 5.24 chemoreceptor, and a specific taste receptor
(T1R) which responds to aliphatic, polar, charged, and
branched amino acids, but not to aromatic amino acids.
Length = 510
Score = 26.5 bits (58), Expect = 8.8
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 19 IPAGQKVAIVGSSGNGKSTIVA-LLERFY 46
IP+ +A+VG++G+G ST VA LL FY
Sbjct: 116 IPS--TIAVVGATGSGVSTAVANLLGLFY 142
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 26.6 bits (59), Expect = 8.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 97 SVSDEQIEEAAK-LANAHGFISEFPSGA 123
+VSDE+ EA + LA G + E PS A
Sbjct: 243 AVSDEEALEAIRLLARREGILVE-PSSA 269
>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 460
Score = 26.3 bits (59), Expect = 9.3
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 25 VAIVGSSGNGKSTIVALL 42
+AI G+ NGKST AL+
Sbjct: 117 IAITGT--NGKSTTTALI 132
>gnl|CDD|224768 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 26.6 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNI 53
+ I G+ G GKST L FY S G I
Sbjct: 266 ILIAGAPGAGKSTFAQALAEFY-ASQGKI 293
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 26.2 bits (58), Expect = 9.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
V I G SG+GK+T+ L +G L HLD
Sbjct: 18 VLIDGRSGSGKTTLAGAL----------AARTGFQLVHLD 47
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 26.1 bits (58), Expect = 9.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 25 VAIVGSSGNGKSTIVALLERFY 46
V +VG G GKST++ L + Y
Sbjct: 42 VVVVGPPGVGKSTLIRSLIKRY 63
>gnl|CDD|201032 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding
proteins, NifH/frxC family.
Length = 272
Score = 26.2 bits (58), Expect = 9.5
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 23 QKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+K+AI G G GKST A L + I G D K D T L
Sbjct: 1 RKIAIYGKGGIGKSTTTQNTSAALAEMGK----KVLIVGCDPKA-DSTRL 45
>gnl|CDD|226727 COG4277, COG4277, Predicted DNA-binding protein with the
Helix-hairpin-helix motif [General function prediction
only].
Length = 404
Score = 26.3 bits (58), Expect = 9.7
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 19 IPAGQKVA-IVGSSGNGKSTIVALLERFYD 47
PAGQ IVG+ G I++ E Y
Sbjct: 214 APAGQSTQMIVGADGETDEDILSRSENLYG 243
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 26.3 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 132 VQAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI 169
+ A + G V M++HR ++ ADL+V L AGQI
Sbjct: 218 LAAVKMAKDAGWGV-MVSHRSGETEDTFIADLVVGLNAGQI 257
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 26.1 bits (57), Expect = 9.9
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 24 KVAIVGSSGNGKSTIV 39
K+ ++G G GK+T++
Sbjct: 7 KIVVLGDGGVGKTTLL 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.364
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,090,494
Number of extensions: 841793
Number of successful extensions: 2344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2207
Number of HSP's successfully gapped: 657
Length of query: 181
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 90
Effective length of database: 6,901,388
Effective search space: 621124920
Effective search space used: 621124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)