RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10472
(181 letters)
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 264 bits (677), Expect = 8e-91
Identities = 80/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
IL + NL I G+ + IVG SG+GKST+ L++RFY +G + I G DL D WLR
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 70 GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
+G++ Q+ VL S+ +NI + +S E++ AAKLA AH FISE G
Sbjct: 83 RQ-VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
ALD ESE ++ + CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
HRLSTV+NAD I+V++ G+IVE G+H+
Sbjct: 202 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 228
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 263 bits (674), Expect = 4e-90
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 45/211 (21%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
+L+ + G+ A+VG +G+GKST+ ALL+ Y + G + + G L D +L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 70 GNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
+ + QEP+LF S RENI YG + + E+I A + AH FIS FP G
Sbjct: 93 TQ-VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG 151
Query: 123 ----------------------------------ALDNESEKLVQAALESACK--GRTVL 146
ALD ++ VQ L + + RTVL
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 147 MIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
+I +LS + A I+ L+ G + E G H
Sbjct: 212 LITQQLSLAERAHHILFLKEGSVCEQ-GTHL 241
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 268 bits (687), Expect = 5e-88
Identities = 89/211 (42%), Positives = 123/211 (58%), Gaps = 45/211 (21%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
I +DF+L IP+G A+VG SG+GKST+++LL R YD +SG I++ G D++ L+ WLR
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 70 GNVIGLINQEPVLFATSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEFPSG---- 122
IG ++QEP+LF+ S+ ENI YG SSV+ E+I+ A++ANA FI FP G
Sbjct: 418 SK-IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 123 ------------------------------------ALDNESEKLVQAALESACKGRTVL 146
ALD E+E LVQ AL+ GRTVL
Sbjct: 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVL 536
Query: 147 MIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
+IAHRLST++NA+++ VL G+I E G+HE
Sbjct: 537 VIAHRLSTIKNANMVAVLDQGKITEY-GKHE 566
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 252 bits (645), Expect = 6e-86
Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 43/210 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ IL+D + +A G SG GKSTI +LLERFY ++G ITI G + ++
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 69 RGNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
R IG ++Q+ + A ++REN+ YG + +DE + + LA A F+ P
Sbjct: 75 RSQ-IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
+LD+ESE +VQ AL+S KGRT L+
Sbjct: 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
IAHRLST+ +AD I ++ GQI G+H
Sbjct: 194 IAHRLSTIVDADKIYFIEKGQITGS-GKHN 222
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 263 bits (675), Expect = 2e-82
Identities = 89/212 (41%), Positives = 123/212 (58%), Gaps = 42/212 (19%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R+ ILK NL++ +GQ VA+VG+SG GKST V L++R YD G ++I G D++ ++
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
+LR IG+++QEPVLFAT++ ENIRYG V+ ++IE+A K ANA+ FI + P
Sbjct: 460 RYLREI-IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
ALD ESE +VQAAL+ A +GRT
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
++IAHRLSTV+NAD+I G IVE G H+
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQ-GNHD 609
Score = 263 bits (673), Expect = 4e-82
Identities = 90/214 (42%), Positives = 121/214 (56%), Gaps = 44/214 (20%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R +L+ +L + GQ +A+VGSSG GKST+V LLERFYD +G++ + G ++K L+
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYG--DSSVSDEQIEEAAKLANAHGFISEFPSG- 122
WLR +G+++QEP+LF S+ ENI YG VS E+I AAK AN H FI P
Sbjct: 1103 QWLRAQ-LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 123 ---------------------------------------ALDNESEKLVQAALESACKGR 143
ALD ESEK+VQ AL+ A +GR
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGR 1221
Query: 144 TVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
T ++IAHRLST+QNADLIVV+Q G++ E G H+
Sbjct: 1222 TCIVIAHRLSTIQNADLIVVIQNGKVKEH-GTHQ 1254
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 240 bits (614), Expect = 4e-81
Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 43/212 (20%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
+ LK N IP+G A+VG +G+GKSTI LL RFYD G+I I G ++ +
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNR 88
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
+R IG++ Q+ +LF +++ NI YG +DE++ +A K A + FI P
Sbjct: 89 NSIRSI-IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDT 147
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
+LD+++E L Q A+E K RT+
Sbjct: 148 IVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTL 207
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
++IAHRLST+ +A+ I++L G+IVE G H+
Sbjct: 208 IIIAHRLSTISSAESIILLNKGKIVEK-GTHK 238
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 239 bits (612), Expect = 6e-77
Identities = 79/210 (37%), Positives = 109/210 (51%), Gaps = 43/210 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L + IP G+ VA+VG SG+GKSTI L RFYDV SG+I + G D++ T L
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 69 RGNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
R + L++Q LF ++ NI Y + + EQIE+AA+ A+A FI P G
Sbjct: 416 RRH-FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
ALD ESE+ +QAAL+ K +TVL+
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
IAHRLST++ AD I+V+ G+I+E G+H
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIER-GRHA 563
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 239 bits (611), Expect = 8e-77
Identities = 83/210 (39%), Positives = 113/210 (53%), Gaps = 43/210 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L++ NL+IPAG+ VA+VG SG+GKSTI +L+ RFYD+ G+I + G DL+ L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSG----- 122
R + L++Q LF +V NI Y + S EQIEEAA++A A FI++ +G
Sbjct: 416 RNQ-VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
ALD ESE+ +QAAL+ K RT L+
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
IAHRLST++ AD IVV++ G IVE G H
Sbjct: 535 IAHRLSTIEQADEIVVVEDGIIVER-GTHS 563
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 238 bits (610), Expect = 1e-76
Identities = 87/209 (41%), Positives = 114/209 (54%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
ILKD NL I G+ VA VG SG GKST++ L+ RFYDV+SG I I G ++K L
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R IGL+ Q+ +LF+ +V+ENI G + +DE++ EAAK+ANAH FI P G
Sbjct: 414 RNQ-IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
ALD ESE ++Q AL+ K RT L++
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV 532
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLST+ +AD IVV++ G IVE G H
Sbjct: 533 AHRLSTITHADKIVVIENGHIVET-GTHR 560
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 225 bits (575), Expect = 2e-74
Identities = 78/209 (37%), Positives = 112/209 (53%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ L+D + + GQ +A+VG SG GKSTI+ LL RFYD+SSG I I G D+ + L
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R + IG++ Q+ VLF ++ +NIRYG + ++++E AA+ A H I FP G
Sbjct: 127 RSH-IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
ALD +E+ +QA+L C RT +++
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRLSTV NAD I+V++ G IVE G+HE
Sbjct: 246 AHRLSTVVNADQILVIKDGCIVER-GRHE 273
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 209 bits (534), Expect = 3e-65
Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 42/209 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +LKD I GQKVA+VG +G+GK+TIV LL RFYDV G I + G+D++ + + L
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 69 RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
R + IG++ Q+ +LF+T+V+EN++YG+ +DE+I+EAAKL ++ FI P G
Sbjct: 428 RSS-IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
+D ++EK +QAA+ +G+T ++I
Sbjct: 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
AHRL+T++NADLI+VL+ G+IVEM G+H+
Sbjct: 547 AHRLNTIKNADLIIVLRDGEIVEM-GKHD 574
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 180 bits (459), Expect = 2e-54
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 42/207 (20%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+L N + G VA++G +G+GKST++ L+ R D G + + +D++ + LR
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR- 416
Query: 71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---------- 120
I + QE VLF+ +++EN+++G +D++I EAAK+A H FI P
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 121 ----SG--------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
SG ++D +EK + L+ KG T +I
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
++ T AD I+VL G++ G H+
Sbjct: 537 KIPTALLADKILVLHEGKVAGF-GTHK 562
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 122 bits (307), Expect = 8e-34
Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 47/206 (22%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
IL++ + I GQ+V ++G +G+GKST+++ R + + G I I GV +
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91
Query: 68 LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
R G+I Q+ +F+ + R+N+ D ++ SD++I + A I +FP
Sbjct: 92 WRKA-FGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDF 147
Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
LD + ++++ L+ A TV
Sbjct: 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 207
Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
++ R+ + D +V++ ++ +
Sbjct: 208 ILCEARIEAMLECDQFLVIEENKVRQ 233
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 71.8 bits (177), Expect = 9e-16
Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 43/201 (21%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT--WLR 69
LK N+ I G+ AI+G +G GKST+ SSG I + + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 70 GNVIGLINQEPV--LFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP- 120
++ G++ Q+P LF+ SV +++ +G ++++ A K +
Sbjct: 84 ESI-GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH 142
Query: 121 --SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIAH 150
S LD + L K G T+++ H
Sbjct: 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
Query: 151 RLSTV-QNADLIVVLQAGQIV 170
+ V D + V++ G+++
Sbjct: 203 DIDIVPLYCDNVFVMKEGRVI 223
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 67.0 bits (164), Expect = 5e-14
Identities = 29/207 (14%), Positives = 67/207 (32%), Gaps = 45/207 (21%)
Query: 3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
+ L++ NL + G+KV I+G +G+GK+T++ + SGNI I+G++++
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRK 69
Query: 63 LDGTWLRGNVIGLINQEPVLFA--TSVRENIRYG--DSSVSDEQIEEAAKLAN-AHGFIS 117
+ N I P + +V + + + + E K +
Sbjct: 70 IR------NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR 123
Query: 118 EFPS-----------------------------GALDNESEKLVQAALESACKGRTVLMI 148
+D ++ ++ G+ +++
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILV 181
Query: 149 AHRLSTVQN-ADLIVVLQAGQIVEMLG 174
H L + + G ++
Sbjct: 182 THELDMLNLYKEYKAYFLVGNRLQGPI 208
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 65.3 bits (160), Expect = 2e-13
Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 44/202 (21%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K L++ +L I G+ + + G++G+GKST++ ++ + +SG++ G K + +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---I 76
Query: 69 RGNVIGLINQEPV--LFATSVRENIRYG-----DSSVSDEQIEEAAKLAN--AHGFISEF 119
R N+ G+ Q P FA V + + + +++A + F
Sbjct: 77 RRNI-GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 135
Query: 120 P---SG--------------------------ALDNESEKLVQAALES-ACKGRTVLMIA 149
P SG LD E + + +E G+TV++I+
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 150 HRLSTV-QNADLIVVLQAGQIV 170
H + TV + D +VVL+ G+ V
Sbjct: 196 HDIETVINHVDRVVVLEKGKKV 217
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 62.2 bits (152), Expect = 2e-12
Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 53/211 (25%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG- 65
LK+ NL I G+ V+I+G SG+GKST I+ L++ + G + I + LD
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDD 75
Query: 66 --TWLRGNVIGLINQEPVLFA-TSVREN-----IRYGDSSVSDEQIEEAAK--------- 108
T +R + IG + Q+ L + EN I ++S E+ + A
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 109 ------------------------LANAHGFI--SEFPSGALDNESEKLVQAALES--AC 140
LAN I + P+ ALD+++ + + L+
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ-PTWALDSKTGEKIMQLLKKLNEE 194
Query: 141 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
G+TV+++ H ++ + + I+ L+ G++
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVER 225
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 61.0 bits (149), Expect = 5e-12
Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 42/202 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
T L + + AG+ + +VG +G GKST++A + G+I +G L+
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWS-ATK 70
Query: 69 RGNVIGLINQEPVL-FATSVRENIRYGDSSVSDEQI-EEAAKLANAHGFISEF------- 119
++Q+ FAT V + + ++ + A +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG 130
Query: 120 -----------------------------PSGALD-NESEKLVQAALESACKGRTVLMIA 149
P +LD + L + + +G ++M +
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190
Query: 150 HRLS-TVQNADLIVVLQAGQIV 170
H L+ T+++A +L+ G+++
Sbjct: 191 HDLNHTLRHAHRAWLLKGGKML 212
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 61.1 bits (149), Expect = 7e-12
Identities = 41/214 (19%), Positives = 80/214 (37%), Gaps = 55/214 (25%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW- 67
KTILK + +I G K + G +G GK+T++ +L + +SG + + G + +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93
Query: 68 -LRGNVIGLINQE---PVLFATSVRENI---------RYGDSSVSDEQIEEAAKLANAHG 114
+R + IG ++ V + + Y D + DE EA +L G
Sbjct: 94 TVRQH-IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD--IDDEIRNEAHQLLKLVG 150
Query: 115 FISEF---------------------------------PSGALDNESEKLVQAALESAC- 140
+S P+ LD + + + + L+S
Sbjct: 151 -MSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSD 209
Query: 141 --KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVE 171
++ + H + + N I++L+ GQ ++
Sbjct: 210 SYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 60.8 bits (148), Expect = 1e-11
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 49/205 (23%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV---ALLERFYDVSSGNITISGVDLKHLDGTWL 68
L + +L +PAGQ ++G+SG GKST++ LLER + G++ + G +L L + L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESEL 100
Query: 69 RGN--VIGLINQEPVLFAT-SVRENIRYG--DSSVSDEQIEEAAK-------LAN-AHGF 115
IG+I Q L ++ +V N+ + ++++ L + +
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 116 ISEFPSG--------------------------ALDNESEKLVQAALESACK--GRTVLM 147
S SG ALD + + + L+ + G T+L+
Sbjct: 161 PSNL-SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
Query: 148 IAHRLSTVQN-ADLIVVLQAGQIVE 171
I H + V+ D + V+ G+++E
Sbjct: 220 ITHEMDVVKRICDCVAVISNGELIE 244
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 59.1 bits (144), Expect = 3e-11
Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 52/207 (25%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG-- 65
ILK +L + G+ V+I+G+SG+GKST I+ LL+ + G + + G ++ + +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75
Query: 66 -TWLRGNVIGLINQEPVLFA-TSVRENI----RYGDSSVSDEQIEEAAK----------- 108
+ LR +G + Q L + EN+ ++ +E +
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG--KPKKEAKERGEYLLSELGLGDK 133
Query: 109 ---------------------LANAHGFI--SEFPSGALDNESEKLVQAALES-ACKGRT 144
LAN + E P+G LD+ + K V G +
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADE-PTGNLDSANTKRVMDIFLKINEGGTS 192
Query: 145 VLMIAHRLSTVQNADLIVVLQAGQIVE 171
++M+ H + + ++ G++V
Sbjct: 193 IVMVTHERELAELTHRTLEMKDGKVVG 219
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 60.0 bits (146), Expect = 3e-11
Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 48/206 (23%)
Query: 12 LKDFNLRIP-AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
K F L P + ++G +G GK+T++ +L + G+ + L RG
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLK--RFRG 71
Query: 71 NVIGLINQEPVLFATSVRENIRYGDS-------SVSD--------EQIEEAAKLANAHGF 115
I +E + I+Y + +V++ + +E +L N
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 116 ----ISEF-------------------------PSGALDNESEKLVQAALESACKGRTVL 146
+ PS LD + A+ K + V+
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI 191
Query: 147 MIAHRLSTVQN-ADLIVVLQAGQIVE 171
++ H L + DLI ++ V
Sbjct: 192 VVDHDLIVLDYLTDLIHIIYGESSVY 217
Score = 48.1 bits (115), Expect = 4e-07
Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 48/198 (24%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L N G+ + I+G +G GK+T +L G++T L +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340
Query: 69 ---RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---SG 122
G V Q+ + ++ + S S EE K N H + SG
Sbjct: 341 PNYDGTV-----QQ--YLENASKDAL-----STSSWFFEEVTKRLNLHRLLESNVNDLSG 388
Query: 123 --------------------------ALDNESEKLVQAALESACK--GRTVLMIAHRLST 154
LD E +V A++ + +I H LS
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Query: 155 VQN-ADLIVVLQAGQIVE 171
AD I+V + G+ +
Sbjct: 449 HDYIADRIIVFK-GEPEK 465
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 56.4 bits (137), Expect = 2e-10
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 71 NVIGLINQEPVLFATSVRENIRYG 94
I +Q + +++ENI +G
Sbjct: 70 -RISFCSQFSWIMPGTIKENIIFG 92
Score = 35.2 bits (82), Expect = 0.006
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172
+T +++ ++ ++ AD I++L G
Sbjct: 179 ANKTRILVTSKMEHLKKADKILILHEGSSYFY 210
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 55.6 bits (135), Expect = 5e-10
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
R L IP G VA+VG G GKS++++ L D G++ I G
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------- 66
Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYG 94
+ + Q+ + S+RENI +G
Sbjct: 67 ------SVAYVPQQAWIQNDSLRENILFG 89
Score = 36.0 bits (84), Expect = 0.003
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172
K +T +++ H +S + D+I+V+ G+I EM
Sbjct: 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 55.8 bits (135), Expect = 8e-10
Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 42/205 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-----ALLERFYDVS-SGNITISGVDLKH 62
+ + G V IVG +G GK+T V L+ + + S + I
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 63 LDG--TWLRGNVIGLINQE------PVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG 114
L L+ I + + P VRE ++ D E++ + +L N
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 223
Query: 115 -FISEF-------------------------PSGALDNESEKLVQAALES-ACKGRTVLM 147
+ + PS LD V + A +G+ VL+
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 148 IAHRLSTVQN-ADLIVVLQAGQIVE 171
+ H L+ + +D+I V+ V
Sbjct: 284 VEHDLAVLDYLSDVIHVVYGEPGVY 308
Score = 44.6 bits (106), Expect = 5e-06
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
L+ I G+ + IVG +G GK+T V +L + + G +
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 55.8 bits (135), Expect = 8e-10
Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 47/197 (23%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+L + + ++G +G GK+T++ LL G I +++ +
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVS------M 417
Query: 69 RGNVIGLINQEPV--LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---SG- 122
+ I V LF +R + + + K I + SG
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIRGQFL------NPQFQTDVVKPLRIDDIIDQEVQHLSGG 471
Query: 123 -------------------------ALDNESEKLVQAALESACK--GRTVLMIAHRLSTV 155
LD+E + + +T ++ H
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531
Query: 156 QN-ADLIVVLQAGQIVE 171
AD ++V +
Sbjct: 532 TYLADKVIVFEGIPSKN 548
Score = 55.8 bits (135), Expect = 8e-10
Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 49/211 (23%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---LKHLDGT 66
+ GQ + +VG++G GKST + +L + G +K+ G+
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 67 WLRGNVIGLINQEPV---------LFATSVRENIRYGD--SSVSDEQI-EEAAKLANAHG 114
L+ ++ + +++ ++ + E+ E+ +
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQ 210
Query: 115 -------FISEF-------------------------PSGALDNESEKLVQAALESACK- 141
I + PS LD + + S
Sbjct: 211 LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 142 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
+ V+ + H LS + +D + ++ V
Sbjct: 271 TKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 55.4 bits (134), Expect = 8e-10
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+LKD N +I GQ +A+ GS+G GK++++ ++ + S G I SG
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 69 RGNVIGLINQEPVLFATSVRENI 91
I +Q + +++ENI
Sbjct: 100 ---RISFCSQNSWIMPGTIKENI 119
Score = 35.0 bits (81), Expect = 0.008
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 141 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 172
+T +++ ++ ++ AD I++L G
Sbjct: 208 ANKTRILVTSKMEHLKKADKILILHEGSSYFY 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 9e-10
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 37/189 (19%)
Query: 4 NLRRLKTI--LKD--FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
N+ RL+ L+ LR PA + V I G G+GK+ + + Y V
Sbjct: 130 NVSRLQPYLKLRQALLELR-PA-KNVLIDGVLGSGKTWVALDVCLSYKV----------- 176
Query: 60 LKHLDGT--WLR-GNVI---GLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAH 113
+D WL N ++ L D S + + + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 114 GFISE-FPSG--ALDN-ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 169
S+ + + L N ++ K A +CK +L+ T + + L A
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWN-AFNLSCK---ILL------TTRFKQVTDFLSAATT 286
Query: 170 VEMLGQHEN 178
+ H +
Sbjct: 287 THISLDHHS 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 55.3 bits (134), Expect = 9e-10
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL--KHLDGTWL 68
+LK N+ I G+ V ++G SG+GKST + L D G I I G++L K + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA 110
R V G++ Q LF +V NI V E+A A
Sbjct: 99 REEV-GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 51.8 bits (125), Expect = 2e-08
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
++ + +I G+ V ++G SG+GK+TI+ L+ + G++ I G + L R
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKR 87
Query: 70 GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS 121
+GL+ Q LF +V +N+ +G D ++ E + + + FP
Sbjct: 88 N--VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH 144
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 51.8 bits (125), Expect = 2e-08
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
+L D +L + G+ + I+G+SG GK+T +A E+ SG I++SG + T
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFS-KNT 73
Query: 67 WL----RGNVIGLINQEPVLFA-TSVRENIRYG 94
L R +G + QE VLF +V NI YG
Sbjct: 74 NLPVRERR--LGYLVQEGVLFPHLTVYRNIAYG 104
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 51.1 bits (123), Expect = 3e-08
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
L + N+ I G++ I+G SG GK+T I+A L+ S+G + +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD---VPSTGELYFDDRLVASNGKL 75
Query: 67 WL----RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
+ R IG++ Q L+ + ENI + +++EE AK+
Sbjct: 76 IVPPEDRK--IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 50.4 bits (121), Expect = 6e-08
Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 42/195 (21%)
Query: 19 IPAGQKVAIVGSSGNGKSTIV-----ALLERFYD-VSSGNITISGVDLKHLDGTW--LRG 70
+ G V IVG +G GKST V L+ S + I L + L+
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 71 NVIGLINQE------PVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG-FISEF---- 119
I + + P V E ++ D + E++ +A +L N I
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGE 163
Query: 120 ---------------------PSGALDNESEKLVQAALES-ACKGRTVLMIAHRLSTVQN 157
PS LD A+ + +G++VL++ H L+ +
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223
Query: 158 -ADLIVVLQAGQIVE 171
+D+I V+ V
Sbjct: 224 LSDIIHVVYGEPGVY 238
Score = 41.9 bits (99), Expect = 4e-05
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
L+ I G+ + IVG +G GK+T V +L + + G I
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL 347
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 49.5 bits (119), Expect = 8e-08
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKH 62
+LK +L+ AG ++I+GSSG+GKST + LE S G I ++G ++
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINL 72
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 49.9 bits (120), Expect = 8e-08
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
L + +L++ +G+ I+G +G GK+ + L+ F+ SG I + G D+ L
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEK 71
Query: 69 RGNVIGLINQEPVLFA-TSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEFPS 121
I + Q LF +V++N+ +G +++ + A+ + P
Sbjct: 72 HD--IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 49.5 bits (119), Expect = 1e-07
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHL--- 63
T L + NL+I G+ +A++G SG+GKST +A + +SG I D+ L
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY---KPTSGKIYFDEKDVTELPPK 73
Query: 64 DGTWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
D R +GL+ Q L+ +V +NI + D+++ E AK+
Sbjct: 74 D----RN--VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKM 120
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 48.7 bits (117), Expect = 2e-07
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL---ERFYDVSSGNITISGVDLKHLD 64
+TILK NL +P G+ A++G +G GKST+ +L Y V G I + G ++ L
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 48.3 bits (116), Expect = 2e-07
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL---ERFYDVSSGNITISGVDLKHLD 64
K IL+ +L + G+ AI+G +G+GKST+ A L E Y+V+ G + G DL L
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALS 90
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 47.9 bits (115), Expect = 3e-07
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
+ + N + G +A++G +G GKST++ LL + G I +
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ----------- 66
Query: 69 RGNVIGLINQEPVL-FATSVRENIRYG 94
IG + Q FA SV + + G
Sbjct: 67 ---SIGFVPQFFSSPFAYSVLDIVLMG 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-07
Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 34/133 (25%)
Query: 20 PAGQKVAIVGSSGNGKSTIVALL-------ERFYDVSSGNITISGVDLKHLDGTWLRGNV 72
P + + G++G+ + + A+ E F+ IT+ +
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL---------FF----- 305
Query: 73 IGLINQE--PVLF--ATSVRENIRYGDS------SVSD---EQIEEAAKLANAHGFISEF 119
IG+ E P + + +++ + S+S+ EQ+++ N+H +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 120 PSGALDNESEKLV 132
+L N ++ LV
Sbjct: 366 VEISLVNGAKNLV 378
Score = 40.8 bits (95), Expect = 1e-04
Identities = 41/189 (21%), Positives = 67/189 (35%), Gaps = 63/189 (33%)
Query: 1 MAG--NLRR--LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56
M NL + ++ + N +PAG++V I S NG +V +S
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLV---------------VS 380
Query: 57 G--VDLKHLDGTWLRGN--VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANA 112
G L L+ LR GL +Q + F S R KL +
Sbjct: 381 GPPQSLYGLN-LTLRKAKAPSGL-DQSRIPF--SER-------------------KLKFS 417
Query: 113 HGF--ISE-FPSGALDNESEKLVQAALESACKGRTVLMIAHRL-----STVQNADLIVVL 164
+ F ++ F S L S+ + + ++ V A + T +DL V+
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVK-----NNVSFNAKDIQIPVYDTFDGSDLRVL- 471
Query: 165 QAGQIVEML 173
+G I E +
Sbjct: 472 -SGSISERI 479
Score = 35.0 bits (80), Expect = 0.012
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 60/188 (31%)
Query: 20 PAGQKV-----AIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
G+++ A++ + + + + S + T + L T
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-EKGLLSAT-------- 1729
Query: 75 LINQEPVLFATSV--RENIRYGDSSVSDEQIEEAAKLANA----H--GFISEF-----PS 121
+P L E+++ + A+A H G E+ +
Sbjct: 1730 -QFTQPALTLMEKAAFEDLK-----------SKGLIPADATFAGHSLG---EYAALASLA 1774
Query: 122 GALDNESE-KLV-------QAALESACKGRT-VLMIAHRLSTV-----QNADLIVVLQA- 166
+ ES ++V Q A+ GR+ MIA V Q A VV +
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 167 ---GQIVE 171
G +VE
Sbjct: 1835 KRTGWLVE 1842
Score = 30.4 bits (68), Expect = 0.39
Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 43/154 (27%)
Query: 10 TILKD-FNLRIPAGQKVAIVGSSGNGKSTIVALLERF-----YDVSSGNIT----ISGVD 59
+ L++ FN +P + ++ + +T L+ +F V + + +
Sbjct: 31 SQLQEQFNKILPEPTEGF---AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 60 LKHLDGTWLRGN----VIGLINQEPVLFATSVRENIR--YGDSSVSDEQIEEAAKLANAH 113
L + +L GN + + QE +E I+ A +A
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-----------TARIMAKRP 136
Query: 114 GFISEFPSGALDNESEKLVQAALESACKGRTVLM 147
+ + AL + +G L+
Sbjct: 137 --FDKKSNSAL-----------FRAVGEGNAQLV 157
Score = 28.5 bits (63), Expect = 1.5
Identities = 31/211 (14%), Positives = 54/211 (25%), Gaps = 71/211 (33%)
Query: 8 LKTILKDFNLRIPAGQKV-AIVGSSGNGKSTIVA----LLERFYDVSS-GNITISGVDLK 61
L L +F G + A+ T + L++ + K
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD----K 139
Query: 62 HLDGTWLR----GNV----I----GLIN------QEPVLFATSVRENIRYGDSSVSDEQI 103
+ R GN I G + ++ L+ T Y + + I
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQT-------Y--HVLVGDLI 188
Query: 104 EEAAKL-----ANAHGFISEFPSGA-----LDNESEK-----------------LVQAA- 135
+ +A+ F G L+N S ++Q A
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 136 LESACK--GRTVLMIAHRLS--TVQNADLIV 162
K G T + L T + L+
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 46.7 bits (112), Expect = 5e-07
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +L+ + I G V G +G GK+T++ + + G I +GV + +
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----V 76
Query: 69 RGNVIGLINQEPVLFAT-SVRENIRYG----DSSVSDEQIEEAAK---LANAHGFISEFP 120
+G I + +E ++ SV + ++ V+ +I +A + + + + E
Sbjct: 77 KGK-IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELS 135
Query: 121 SG 122
G
Sbjct: 136 QG 137
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 46.7 bits (112), Expect = 6e-07
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
+K +L++P GQ V ++G++G GK+T ++ + G I +G D+ + +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 71 NVIGLINQEPVLFAT-SVRENIRYG-----DSSVSDEQIEE 105
I L+ + +F +V EN+ G D +E
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW 121
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 46.8 bits (112), Expect = 9e-07
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHL--- 63
+ + + G+ VA++G SG GK+T ++A + +SG I V + +
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY---KPTSGEIYFDDVLVNDIPPK 73
Query: 64 DGTWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
R +G++ Q L+ +V ENI + ++++ E A+
Sbjct: 74 Y----RE--VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK 120
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 46.8 bits (112), Expect = 9e-07
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 22/113 (19%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHL--- 63
T + NL I G+ + ++G SG GK+T ++A LE + + G I D+ +L
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPTEGRIYFGDRDVTYLPPK 81
Query: 64 DGTWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
D R I ++ Q ++ +V ENI + D+++ AA+L
Sbjct: 82 D----RN--ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 128
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 46.5 bits (111), Expect = 1e-06
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
T +++ +L + G+ + ++G SG GK+T ++A LE + S G I I + +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDKLVADPEKG 73
Query: 67 WL-----RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
R I ++ Q L+ +V +NI + D+++ E A+L
Sbjct: 74 IFVPPKDRD--IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL 126
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 45.6 bits (109), Expect = 2e-06
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 1 MAG-NLRRLK------TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSS 50
MA L+ + + KD NL I G+ V VG SG GKST ++A LE ++S
Sbjct: 1 MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITS 57
Query: 51 GNITISGVD 59
G++ I
Sbjct: 58 GDLFIGEKR 66
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 43.3 bits (103), Expect = 9e-06
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 16 NLRIPAGQK-VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
N+ G+ ++G +G GKS + L+ G + ++G D+ L RG IG
Sbjct: 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRG--IG 73
Query: 75 LINQEPVLFA-TSVRENIRYG----DSSVSDEQIEEAAKLANAHGFISEFPS 121
+ Q+ LF SV NI YG + D ++ E A+ + P+
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 43.5 bits (102), Expect = 2e-05
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56
K + D N + ++A++G +G GKST++ +L +SG +
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733
Score = 37.7 bits (87), Expect = 0.001
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 23/113 (20%)
Query: 9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
K +L LR+ ++ I G +G GKST++ I+ +DG
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRA-------------IANGQ---VDGFPT 491
Query: 69 RGNV-IGLINQEPVLFAT--SVRENIRYGDSSVSDEQIEEAAKLANAHGFISE 118
+ + + + SV + + E GF E
Sbjct: 492 QEECRTVYVEHDIDGTHSDTSVLDFVFESG----VGTKEAIKDKLIEFGFTDE 540
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 39.2 bits (91), Expect = 3e-04
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 23 QKVAIVGSSGN-GKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
+V I G++G G+ A L+ K L
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGA-------- 62
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
I YG + E +E+ K +S ++ ++ LV+A
Sbjct: 63 --------IIVYGLIN-EQEAMEKILKEHEIDIVVSTVGGESILDQI-ALVKAMKAVGTI 112
Query: 142 GRTV 145
R +
Sbjct: 113 KRFL 116
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 37.9 bits (89), Expect = 8e-04
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL 63
L ++ + G I+G +G+GKST++ ++ F G + D+ +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 37.1 bits (87), Expect = 0.002
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 18/78 (23%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY---DVSSGNITISGVDLKH 62
LK+ ++ IP G V + G SG+GKS++V AL+ + + +I G + +
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHE--N 657
Query: 63 LDGTWLRGNVIGLINQEP 80
+D +I I+Q P
Sbjct: 658 ID------KMIA-IDQSP 668
Score = 30.1 bits (69), Expect = 0.45
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST 37
LK+ +RIP + V I G SG+GKS+
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSS 39
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 37.1 bits (87), Expect = 0.002
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 18/78 (23%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY---DVSSGNITISGVDLKH 62
LK+ +++IP G VA+ G SG+GKST+V AL ++ + + I G++ H
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE--H 697
Query: 63 LDGTWLRGNVIGLINQEP 80
LD VI I+Q P
Sbjct: 698 LD------KVID-IDQSP 708
Score = 32.1 bits (74), Expect = 0.080
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ ++ IP G+ V + G SG+GKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 36.7 bits (86), Expect = 0.003
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
LK+ +++IP G VA+ G SG+GKST+V
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
Score = 36.0 bits (84), Expect = 0.005
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST-----IVALLERFY 46
LK+ ++ IP G+ V + G SG+GKS+ I A +R Y
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRY 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 36.7 bits (86), Expect = 0.003
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
L+ ++ P G ++ G SG+GKST+V
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLV 685
Score = 34.0 bits (79), Expect = 0.022
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKS-----TIVALLERFY 46
L+ +L +P + G SG+GKS TI A +R Y
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRY 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 36.7 bits (86), Expect = 0.003
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
L + ++R P G ++ G SG+GKST+V
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLV 540
Score = 31.7 bits (73), Expect = 0.14
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST 37
LKD ++++P V G SG+GKS+
Sbjct: 26 LKDISVKVPRDALVVFTGVSGSGKSS 51
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 34.4 bits (79), Expect = 0.015
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 97 SVSDEQIEEAAKLANAHGFISEFPSGA 123
++E++ +A A++ G P
Sbjct: 381 EATEEELMDAMAQADSTGMFIC-PHTG 406
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 33.3 bits (76), Expect = 0.027
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 19/124 (15%)
Query: 23 QKVAIVGSSGN-GKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
++ ++G++G G+ A L+ + + G
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGA------ 58
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
NI +G + EA + N IS S ++++ +++A E
Sbjct: 59 --------NIVHGSID-DHASLVEA--VKNVDVVISTVGSLQIESQ-VNIIKAIKEVGTV 106
Query: 142 GRTV 145
R
Sbjct: 107 KRFF 110
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 33.0 bits (75), Expect = 0.037
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 22/125 (17%)
Query: 23 QKVAIVGSSGN-GKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
+V IVG +G GK + A + + ++ + +
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDK---------------VQML 49
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESE---KLVQAALES 138
L+ + + +++ +A L IS G L + KLV+A E+
Sbjct: 50 LYFKQLGAKLIEASLD-DHQRLVDA--LKQVDVVISALAGGVLSHHILEQLKLVEAIKEA 106
Query: 139 ACKGR 143
R
Sbjct: 107 GNIKR 111
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 32.4 bits (74), Expect = 0.044
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
+ +L+ + R P Q VA+ G+ G+GKST+ L + +D HLD
Sbjct: 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN 65
Query: 66 TWLR 69
L
Sbjct: 66 RLLE 69
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 32.2 bits (73), Expect = 0.067
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 19/124 (15%)
Query: 23 QKVAIVGSSGN-GKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
+K+ I G +G GK + A L + ++ + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPS--------------SVQLR 50
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
S+ I G+ E++ L IS P + ++ ++ A +
Sbjct: 51 EEFRSMGVTIIEGEME-EHEKMVSV--LKQVDIVISALPFPMISSQ-IHIINAIKAAGNI 106
Query: 142 GRTV 145
R +
Sbjct: 107 KRFL 110
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 31.0 bits (71), Expect = 0.12
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 33/111 (29%)
Query: 20 PAGQKVAIV---GSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLI 76
+K +V G G+GK+TI L + G ++ LDG W R +
Sbjct: 8 KCIEKGIVVWLTGLPGSGKTTIATRLAD-------LLQKEGYRVEVLDGDWARTT----V 56
Query: 77 NQEPVL-FATSVR-ENIRYGDSSVSDEQIEEAAKLANAHG------FISEF 119
++ F R +++ +I A+L +G F+S +
Sbjct: 57 SEG--AGFTREERLRHLK---------RIAWIARLLARNGVIVICSFVSPY 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.13
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 17/39 (43%)
Query: 4 NLRRLKTILK----DFNLRIPAGQKVAIVGSSGNGKSTI 38
L++L+ LK D PA +AI K+T+
Sbjct: 21 ALKKLQASLKLYADD---SAPA---LAI-------KATM 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 31.1 bits (71), Expect = 0.13
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 1 MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF 45
MA N + + L KV +VGS G GKS AL +F
Sbjct: 1 MAANKPKGQNSLALH--------KVIMVGSGGVGKS---ALTLQF 34
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.8 bits (69), Expect = 0.15
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 25 VAIVGSSGNGKST-----IVALLERFYDVSSGNITISGVDLKHLDGT 66
+VG +GK+T + A + + V + G + +G
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGV 53
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 31.1 bits (71), Expect = 0.17
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 97 SVSDEQIEEAAK-LANAHGFISEFPSGA 123
+ SDE+I A +A G E P+ A
Sbjct: 274 AASDEEILAAYHLVARVEGVFVE-PASA 300
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.20
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 14/140 (10%)
Query: 24 KVAIVGSSGNGKSTIVA-LLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL 82
K+ I G G GK+T+V ++ER + G T D + +I ++ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPE--TKKRTGFRIITTEGKKKIF 59
Query: 83 FATSVRENIRYGDSSVSDEQIEEAA--KLANAHGFISEFPS--------GALDNESEKLV 132
+ G V+ + EE A L A+ + G ++ S+K
Sbjct: 60 SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFR 119
Query: 133 QAALES-ACKGRTVLMIAHR 151
+ V+
Sbjct: 120 DLVRQIMHDPNVNVVATIPI 139
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 30.7 bits (70), Expect = 0.23
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 97 SVSDEQIEEAAK-LANAHGFISEFPSGA 123
+V+DE+I A + LA G E P+ A
Sbjct: 265 AVTDEEILFAYRYLAREEGIFCE-PASA 291
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 30.3 bits (68), Expect = 0.29
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 24/122 (19%)
Query: 23 QKVAIVGSSGN-GKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
K+ I G +G G + L+ + T L + I
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYV--FTRPNSSKTTLLDEFQSLGAI-------- 61
Query: 82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
I G+ E++ E + IS + ++ K+++A +
Sbjct: 62 ---------IVKGELD-EHEKLVEL--MKKVDVVISALAFPQILDQ-FKILEAIKVAGNI 108
Query: 142 GR 143
R
Sbjct: 109 KR 110
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Length = 525
Score = 30.5 bits (69), Expect = 0.31
Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 1 MAGNLRRLKTILKDFNLRI----PAGQKVAIVGSSGNGKSTIV 39
++ + +L +++ P G + G ++
Sbjct: 168 HRDDVAEVTKLLATMGIKVNVCAPLGASPDDLRKLGQAHFNVL 210
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.0 bits (67), Expect = 0.32
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 VAIVGSSGNGKSTIV-ALLERFYDVSSGNITISG 57
+++ GSSG G ST+ + F ++I G
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG 41
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 30.3 bits (69), Expect = 0.33
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 97 SVSDEQIEEAAK-LANAHGFISEFPSGA 123
+VSD +I A K +A+ G E P+ A
Sbjct: 267 AVSDSEILYAYKLIASTEGVFCE-PASA 293
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 29.8 bits (68), Expect = 0.37
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
KV IVG+ +GKS AL+ R+
Sbjct: 22 KVGIVGNLSSGKS---ALVHRY 40
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 29.6 bits (67), Expect = 0.40
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ IVG++G+GK+T LL++ G+D+K
Sbjct: 4 KLMIVGNTGSGKTT---LLQQLMKTKKSDLGMQSATVGIDVK 42
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 29.9 bits (67), Expect = 0.43
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 24/127 (18%)
Query: 23 QKVAIVGSSGN-GKSTIVALLERFYDV---SSGNITISGVDLKHLDGTWLRGNVIGLINQ 78
K+ I+G +G G+ + A ++ IT + + K + +
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGV----- 57
Query: 79 EPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALES 138
+ GD + E + +A + I ++++ K+++A E+
Sbjct: 58 -----------ILLEGDIN-DHETLVKA--IKQVDIVICAAGRLLIEDQ-VKIIKAIKEA 102
Query: 139 ACKGRTV 145
+
Sbjct: 103 GNVKKFF 109
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 29.5 bits (67), Expect = 0.44
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 32/109 (29%)
Query: 22 GQKVAIV---GSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQ 78
Q+ + G S +GKST+ LE LDG +R GL N+
Sbjct: 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYR------LDGDNIRF---GL-NK 71
Query: 79 EPVL-FATSVR-ENIRYGDSSVSDEQIEEAAKLANAHG------FISEF 119
+ L F+ + R ENIR +I E AKL FIS +
Sbjct: 72 D--LGFSEADRNENIR---------RIAEVAKLFADSNSIAITSFISPY 109
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 29.2 bits (66), Expect = 0.50
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVS 49
+V ++G G GKS L F V
Sbjct: 8 RVVLIGEQGVGKS---TLANIFAGVH 30
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 29.2 bits (66), Expect = 0.64
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVS 49
+V ++G G GKS L F V
Sbjct: 39 RVVLIGEQGVGKS---TLANIFAGVH 61
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 28.7 bits (65), Expect = 0.71
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 33/109 (30%)
Query: 22 GQKVAIV---GSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQ 78
+ V G SG GK+T+ LE + G+ LDG +R +N+
Sbjct: 2 HMRGCTVWLTGLSGAGKTTVSMALEE-------YLVCHGIPCYTLDGDNIRQG----LNK 50
Query: 79 EPVL-FATSVR-ENIRYGDSSVSDEQIEEAAKLANAHG------FISEF 119
L F+ R EN+R +I E AKL G FIS +
Sbjct: 51 N--LGFSPEDREENVR---------RIAEVAKLFADAGLVCITSFISPY 88
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 28.8 bits (65), Expect = 0.72
Identities = 7/22 (31%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
++ ++G + +GKS +L+ RF
Sbjct: 9 RLGVLGDARSGKS---SLIHRF 27
>3tuf_B Stage II sporulation protein Q; intercellular signalling,
intercellular channel, sporulation engulfment and
signalling, intercellular space; 2.26A {Bacillus
subtilis} PDB: 3uz0_B
Length = 245
Score = 28.8 bits (64), Expect = 0.75
Identities = 2/20 (10%), Positives = 8/20 (40%)
Query: 18 RIPAGQKVAIVGSSGNGKST 37
++ Q + G + + +
Sbjct: 142 KVKQNQVIGKSGKNLYSEDS 161
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 28.7 bits (65), Expect = 0.76
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
KV +VG SG GK+ LL RF + + T+ G+D +
Sbjct: 12 KVMLVGDSGVGKT---CLLVRFKDGAFLAGTFISTV-GIDFR 49
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 29.2 bits (66), Expect = 0.80
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERF 45
GQ++ I SG GKST++ ++
Sbjct: 71 GQRIGIFAGSGVGKSTLLGMICNG 94
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.5 bits (63), Expect = 0.84
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI 53
G + + G G+GKSTI L V +
Sbjct: 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHF 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 28.6 bits (65), Expect = 0.89
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
K+ +VG G GKS AL +F
Sbjct: 11 KLVVVGGGGVGKS---ALTIQFIQ 31
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 28.3 bits (64), Expect = 0.90
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLK 61
K+ ++G SG GK+ +L RF + + + IS G+D K
Sbjct: 10 KLLLIGDSGVGKT---CVLFRFSEDAFNSTFISTIGIDFK 46
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 28.4 bits (64), Expect = 0.97
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK----HLDG 65
K+ +VG G GK+T ++R ++ T+ GV++ H +
Sbjct: 17 KLVLVGDGGTGKTT---FVKRHLTGEFEKKYVA-TL-GVEVHPLVFHTNR 61
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 28.2 bits (64), Expect = 1.0
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
K+ +VG+ G GKS AL +
Sbjct: 5 KLVVVGAGGVGKS---ALTIQLIQ 25
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein;
2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Length = 226
Score = 28.6 bits (63), Expect = 1.0
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 97 SVSDEQIEEAAKLANA---HGFISEFPSGALDNESEK--LVQAALESACKGRTVLMIAHR 151
++D+ ++ ++ H F+ + SG L E K ++Q R + +I+ +
Sbjct: 4 MITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSK 63
Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
A+LI + + VE+ + K
Sbjct: 64 AEYPLMAELIELARDEVTVEV-ENYVKLLK 92
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 28.3 bits (64), Expect = 1.0
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
K+ +VG G GKS AL +F+
Sbjct: 20 KLVVVGDGGVGKS---ALTIQFFQ 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 28.3 bits (64), Expect = 1.0
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
K+ +VG+ G GKS AL +
Sbjct: 6 KLVVVGADGVGKS---ALTIQLIQ 26
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
K+ +VG+ G GKS AL +
Sbjct: 23 KLVVVGAGGVGKS---ALTIQLIQ 43
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
+V + G+ G GKS +L+ RF
Sbjct: 10 RVVVFGAGGVGKS---SLVLRFVK 30
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 28.3 bits (64), Expect = 1.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
KV +VGS G GKS AL +F
Sbjct: 20 KVIMVGSGGVGKS---ALTLQF 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 28.2 bits (64), Expect = 1.1
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVS 49
KV +VG SG GKS L F +
Sbjct: 4 KVMLVGESGVGKS---TLAGTFGGLQ 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 28.2 bits (64), Expect = 1.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
KV +VGS G GKS AL +F
Sbjct: 6 KVIMVGSGGVGKS---ALTLQF 24
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 28.4 bits (64), Expect = 1.1
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ ++G SG GKS LL RF D S TI GVD K
Sbjct: 35 KLLLIGDSGVGKS---CLLLRFADDTYTESYISTI-GVDFK 71
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 28.5 bits (64), Expect = 1.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERF 45
GQ++ + SG GKS ++ ++ R+
Sbjct: 157 GQRMGLFAGSGVGKSVLLGMMARY 180
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 28.3 bits (64), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
K+AI G +G GKS AL+ RF
Sbjct: 30 KLAIFGRAGVGKS---ALVVRF 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 27.8 bits (63), Expect = 1.2
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
KV ++G+ G GKS AL F
Sbjct: 4 KVLLLGAPGVGKS---ALARIF 22
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.2 bits (62), Expect = 1.2
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 21 AGQKVAIVGSSGNGKSTIVALL-----ERFYDVSSGNITISGVDLKHLDGTWLRGNVIGL 75
+ + + G S GKS IV L E + ++ + + + G
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 76 INQEPVL------FATSVRENIRYGDSSVSDEQIEEAAKL 109
++ P +A V R G + D+ A
Sbjct: 62 VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAA 101
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 28.0 bits (63), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 22 GQKVAIV---GSSGNGKSTIVALLER 44
QK ++ G SG+GKST+ L +
Sbjct: 22 DQKGCVIWVTGLSGSGKSTLACALNQ 47
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 28.0 bits (63), Expect = 1.3
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
KV ++G SG GKS LL RF +++ S + TI GV+
Sbjct: 7 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKS-TI-GVEFA 43
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.2 bits (62), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
N K++ K F + +VG SG GKST++
Sbjct: 6 NQVHRKSVKKGFEFTL------MVVGESGLGKSTLI 35
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 27.8 bits (63), Expect = 1.3
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
K+ ++GS G GKS AL +F
Sbjct: 5 KLVVLGSGGVGKS---ALTVQF 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
K+AI+G GKS +L +F
Sbjct: 8 KIAILGYRSVGKS---SLTIQF 26
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.9 bits (63), Expect = 1.4
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
KV I+G GK+ +L +F
Sbjct: 26 KVVILGYRCVGKT---SLAHQF 44
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 28.5 bits (63), Expect = 1.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 2 AGNLRRLKTILKDFNLRIPAGQ-KVAIVGSSGNGKSTIV-ALL 42
AGN++ + + D I + VA+ G +G+GKS+ + L
Sbjct: 48 AGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 28.0 bits (63), Expect = 1.4
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
KV ++G SG GKS LL RF +++ S + TI GV+
Sbjct: 31 KVVLIGDSGVGKSN---LLSRFTRNEFNLESKS-TI-GVEFA 67
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
+AI+G G GKS AL +F
Sbjct: 23 NLAILGRRGAGKS---ALTVKF 41
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 28.0 bits (63), Expect = 1.4
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ I+G SG GKS +LL RF D TI GVD K
Sbjct: 17 KILIIGESGVGKS---SLLLRFTDDTFDPELAATI-GVDFK 53
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 27.9 bits (63), Expect = 1.4
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
+V ++G G GK+ +L F
Sbjct: 6 RVVLLGDPGVGKT---SLASLF 24
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 120 PSGALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIV 162
P+ LD E KL+ K V++++H AD ++
Sbjct: 90 PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 133
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 27.8 bits (63), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
KV ++GS G GKS AL +F
Sbjct: 5 KVVVLGSGGVGKS---ALTVQF 23
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
+VA+ G+ G GKS +L+ RF
Sbjct: 5 RVAVFGAGGVGKS---SLVLRF 23
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 27.9 bits (63), Expect = 1.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K ++G++G GKS LL +F + N TI GV+
Sbjct: 12 KFLVIGNAGTGKS---CLLHQFIEKKFKDDSNHTI-GVEFG 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 28.0 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K ++GS+G GKS LL +F + N TI GV+
Sbjct: 27 KFLVIGSAGTGKS---CLLHQFIENKFKQDSNHTI-GVEFG 63
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A
{Escherichia coli}
Length = 346
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 83 FATSVREN-IRY-GDSSVSDEQIEEAAKLANAHG--FISEFPS 121
A +V+ Y G SS S E+ ++ +L + PS
Sbjct: 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPS 195
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 28.0 bits (63), Expect = 1.5
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 24 KVAIVGSSGNGKSTIVALLERF 45
KV +VG SG GKS L F
Sbjct: 25 KVMLVGESGVGKS---TLAGTF 43
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 28.3 bits (64), Expect = 1.5
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 83 FATSVREN-IRY-GDSSVSDEQIEEAAKLANAHG--FISEFPS 121
VR Y G S+ + +A + G + P
Sbjct: 174 LDHLVRHGKALYVGISNYPADLARQAIDILEDLGTPCLIHQPK 216
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 27.9 bits (62), Expect = 1.6
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 25 VAIVGSSGNGKSTIVALLER--FYDVSSGNITISGVDLKHLDGTWL 68
+ I G G+GKS LL+ + ++ ++ G L
Sbjct: 4 ILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERL 49
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.0 bits (63), Expect = 1.6
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALL 42
L+ L+ L G+ G SG GKS+++ ALL
Sbjct: 205 GLKPLEEALT--------GRISIFAGQSGVGKSSLLNALL 236
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 27.5 bits (62), Expect = 1.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K I+G G GKS LL +F + ++ TI GV+
Sbjct: 17 KYIIIGDMGVGKS---CLLHQFTEKKFMADCPHTI-GVEFG 53
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 27.6 bits (62), Expect = 1.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ +VG + GK+ +++RF + G+ TI GVD
Sbjct: 31 KLVLVGDASVGKT---CVVQRFKTGAFSERQGS-TI-GVDFT 67
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 28.0 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 91 IRY-GDSSVSDEQIEEAAKLANAHGFI 116
Y G S S +I EA +A I
Sbjct: 182 AMYWGTSRWSSMEIMEAYSVARQFNLI 208
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 27.6 bits (62), Expect = 1.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K I+G +G GKS LL +F D ++TI GV+
Sbjct: 23 KYIIIGDTGVGKSC---LLLQFTDKRFQPVHDLTI-GVEFG 59
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 27.5 bits (62), Expect = 1.8
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ I+G SG GKS +LL RF + S TI GVD K
Sbjct: 11 KLLIIGDSGVGKS---SLLLRFADNTFSGSYIT-TI-GVDFK 47
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 27.9 bits (63), Expect = 1.8
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 91 IRY-GDSSVSDEQIEEAAKLANAHGFI 116
Y G S S +I EA +A I
Sbjct: 148 AMYWGTSRWSSMEIMEAYSVARQFNLI 174
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 27.6 bits (62), Expect = 1.8
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
+V I+GS G GK+ +L+ERF D + T+ GVD K
Sbjct: 28 QVIIIGSRGVGKT---SLMERFTDDTFCEACKSTV-GVDFK 64
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 27.7 bits (62), Expect = 1.9
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ ++G+SG GKS LL RF D + TI GVD K
Sbjct: 10 KLLLIGNSGVGKS---CLLLRFSDDTYTNDYISTI-GVDFK 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 27.5 bits (62), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
KV ++G G GKS +L+ R+ +D + TI GV+
Sbjct: 9 KVILLGDGGVGKS---SLMNRYVTNKFDTQLFH-TI-GVEFL 45
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 27.6 bits (62), Expect = 2.0
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ I+G+S GK+ + L R+ + + + T+ G+D K
Sbjct: 25 KLLIIGNSSVGKT---SFLFRYADDTFTPAFVS-TV-GIDFK 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 27.6 bits (62), Expect = 2.1
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ ++G+S GK++ L R+ + + + T+ G+D K
Sbjct: 24 KLLLIGNSSVGKTS---FLFRYADDSFTPAFVS-TV-GIDFK 60
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 27.7 bits (61), Expect = 2.1
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
D + G I+G +G+GKS+++
Sbjct: 14 HSDTVVEFKEG-INLIIGQNGSGKSSLL 40
Score = 27.3 bits (60), Expect = 2.6
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 103 IEEAAKLANAHGFISEF-------PSGALDNE-SEKLVQAALESACKGRTVLMIAHRLST 154
+ A +LA + E P+ LD E KL+ K V++++H
Sbjct: 257 LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316
Query: 155 VQNADLIVVL 164
AD ++ +
Sbjct: 317 KDAADHVIRI 326
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 27.6 bits (62), Expect = 2.1
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ I+G+S GK++ L R+ + + + T+ G+D K
Sbjct: 10 KILIIGNSSVGKTS---FLFRYADDSFTPAFVS-TV-GIDFK 46
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 27.6 bits (62), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ ++G++G GK+ L+ RF + G TI GVD
Sbjct: 28 KIVLIGNAGVGKT---CLVRRFTQGLFPPGQGA-TI-GVDFM 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 27.5 bits (62), Expect = 2.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLK 61
K+ ++G SG GKS LL RF + I+ G+D K
Sbjct: 5 KILLIGDSGVGKS---CLLVRFVEDKFNPSFITTIGIDFK 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 27.6 bits (62), Expect = 2.1
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ ++G S GK+ L RF TI GVD +
Sbjct: 22 KIIVIGDSNVGKT---CLTYRFCAGRFPDRTEATI-GVDFR 58
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 27.7 bits (62), Expect = 2.4
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVI 73
D + GQK+ I SG + I A + R V + V
Sbjct: 139 DVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFA-------VVF 191
Query: 74 GLI 76
+
Sbjct: 192 AAM 194
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 27.7 bits (61), Expect = 2.4
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF 45
+ LK IP + G +GK+T+ A L
Sbjct: 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 27.2 bits (61), Expect = 2.5
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ ++G SG GKS LL RF D S TI GVD K
Sbjct: 18 KLLLIGDSGVGKS---CLLLRFADDTYTESYISTI-GVDFK 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 27.2 bits (61), Expect = 2.5
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ + G + GKS+ L R + + T+ GVD +
Sbjct: 30 KIVLAGDAAVGKSS---FLMRLCKNEFRENISATL-GVDFQ 66
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 27.4 bits (61), Expect = 2.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ ++G SG GKS LL RF +++ S + TI GV+
Sbjct: 15 KIVLIGDSGVGKS---NLLSRFTKNEFNMDSKS-TI-GVEFA 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 27.3 bits (61), Expect = 2.6
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ ++G SG GKS LL RF + S TI G+D K
Sbjct: 22 KILLIGDSGVGKS---CLLVRFVEDKFNPSFITTI-GIDFK 58
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 27.2 bits (61), Expect = 2.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K +G SG GK++ +L ++ D S T+ G+D +
Sbjct: 13 KFLALGDSGVGKTS---VLYQYTDGKFNSKFITTV-GIDFR 49
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 27.3 bits (61), Expect = 2.6
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD 47
K+ ++G G GK+T + R D
Sbjct: 13 KICLIGDGGVGKTT---YINRVLD 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural
genomics, structural genomic consortium, SGC,
apoptosis, transcription; 1.95A {Homo sapiens}
Length = 357
Score = 27.3 bits (61), Expect = 2.7
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
+P K +G+ G I + Y++ G++ +
Sbjct: 27 VPCSAKFVTMGNFARGTGVI-----QLYEIQHGDLKL 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 27.2 bits (61), Expect = 2.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
KV ++G SG GK+ LL RF + S TI GV+
Sbjct: 27 KVVLIGESGVGKTN---LLSRFTRNEFSHDSRT-TI-GVEFS 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 27.2 bits (61), Expect = 2.9
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 13/50 (26%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK----HLDG 65
KV I+G SG GK+ +L+ ++ + TI G D +D
Sbjct: 10 KVIILGDSGVGKT---SLMNQYVNKKFSNQYKA-TI-GADFLTKEVMVDD 54
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.1 bits (61), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERFYDV 48
G+ V + G S GKST+V L ER ++
Sbjct: 20 GRVVVLSGPSAVGKSTVVRCLRERIPNL 47
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 27.3 bits (61), Expect = 3.1
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGN 52
GQK+ I +SG + I + R V
Sbjct: 152 GQKLPIFSASGLPHNEIALQIARQASVPGSE 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.1 bits (60), Expect = 3.1
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALL--ERF 45
+L + V ++G G GKS+ V +L+ +
Sbjct: 21 KLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVV 62
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 26.7 bits (60), Expect = 3.3
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ +VG+ GKS ++++R+ + TI GVD
Sbjct: 7 KMVVVGNGAVGKS---SMIQRYCKGIFTKDYKK-TI-GVDFL 43
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.2 bits (60), Expect = 3.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 19 IPAGQKVAIVGSSGNGKSTI 38
P G V + G +G GK+T
Sbjct: 27 FPEGTTVLLTGGTGTGKTTF 46
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 26.9 bits (60), Expect = 3.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLK 61
KVA+VG + GKS AL+ F +T GV++
Sbjct: 22 KVAVVGEATVGKS---ALISMFTSKGSKFLKDYAMTS-GVEVV 60
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 27.1 bits (60), Expect = 3.4
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 25 VAIVGSSGNGKSTIV-ALLERFYDVSSGNITISGVDLKHLDGTW 67
+ + G G GKST L + + I + ++ W
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVW 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 26.9 bits (60), Expect = 3.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLK 61
K+ +G SG GK+T L R+ D T+ G+D +
Sbjct: 27 KLLALGDSGVGKTT---FLYRYTDNKFNPKFITTV-GIDFR 63
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 27.1 bits (61), Expect = 3.5
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 18 RIPAGQKVAIVGSSGNGKSTIVALL 42
R VAI GS NGKST+ L+
Sbjct: 100 REAQAPIVAITGS--NGKSTVTTLV 122
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 26.9 bits (59), Expect = 3.6
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
G V I G SG GKS L++R + + + + VD+ D + G
Sbjct: 34 GLGVLITGDSGVGKSETALELVQRGHRLIADDR----VDVYQQDEQTIVGA 80
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 26.8 bits (60), Expect = 3.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK----HLDG 65
KV I+G SG GK+ +L+ R+ Y TI G D +DG
Sbjct: 10 KVIILGDSGVGKT---SLMHRYVNDKYSQQYKA-TI-GADFLTKEVTVDG 54
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 27.0 bits (59), Expect = 3.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 18 RIPAGQKVAIVGSSGNGKSTIV 39
+ AG A+V G GKS +
Sbjct: 26 NMVAGTVGALVSPGGAGKSMLA 47
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 27.1 bits (60), Expect = 3.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 14 DFNLRIPAGQKVAIVGSSGNGKSTIVA 40
D +I + A+ G G GKST +
Sbjct: 33 DEADKITGAKVFAVYGKGGIGKSTTSS 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.1 bits (59), Expect = 3.8
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 16/109 (14%)
Query: 8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY-------------DVSSGNIT 54
L +L+ + G +V IVG S GK+++ L + D T
Sbjct: 124 LHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFT 183
Query: 55 ISG-VDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY--GDSSVSD 100
+ G + + + ++ + G +++
Sbjct: 184 VPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE 232
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 26.7 bits (59), Expect = 4.0
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 25 VAIVGSSGNGKSTIV-ALLERFYDVS 49
+ I G + +GK+T+ L + + S
Sbjct: 24 IGISGVTNSGKTTLAKNLQKHLPNCS 49
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 26.8 bits (59), Expect = 4.0
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
I G +G GKST L D S +++G + V+G
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNS-----------AYIEGDIINHMVVG 43
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 26.8 bits (60), Expect = 4.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 16 NLRIPAGQKVAIVGSSGNGKSTIV-ALLERFYD 47
NL + + ++G+SG G+S I ALL + +
Sbjct: 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPE 45
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 26.3 bits (59), Expect = 4.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERFYDV 48
+ V + G SG GKST++ L + +
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSI 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 26.7 bits (59), Expect = 5.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 25 VAIVGSSGNGKSTIVALL 42
V I G +G GKS + A
Sbjct: 150 VTIYGMAGCGKSVLAAEA 167
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 26.8 bits (60), Expect = 5.2
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 18 RIPAGQKVAIVGSSGNGKSTIVALLER-----FYDVS-SGNI 53
+ Q + I GS NGK+T ++ +GNI
Sbjct: 108 LVSESQLIGITGS--NGKTTTTTMIAEVLNAGGQRGLLAGNI 147
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 26.3 bits (58), Expect = 5.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 24 KVAIVGSSGNGKSTIVALL 42
K+A+ G G GK+T+ A L
Sbjct: 2 KLAVAGKGGVGKTTVAAGL 20
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 26.9 bits (59), Expect = 5.3
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 24 KVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGVDLKH 62
KV ++G GK++ LL++ G+++
Sbjct: 43 KVHLIGDGMAGKTS---LLKQLIGETFDPKESQTHGLNVVT 80
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 26.4 bits (58), Expect = 5.3
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 12/100 (12%)
Query: 25 VAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
+ + G GK+T+ L +S D V +
Sbjct: 8 IIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIM--M 65
Query: 82 LFATSVRENIRYGDSSVSD------EQIEEAAKLANAHGF 115
L+ T ++ G S + + E L F
Sbjct: 66 LYHT-AATILQSGQSLIMESNFRVDLDTERMQNLHTIAPF 104
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.4 bits (59), Expect = 5.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
+ L L+ G + G SG GKS+I++ L
Sbjct: 155 GIDELVDYLE--------GFICILAGPSGVGKSSILSRL 185
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 26.1 bits (58), Expect = 5.5
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
+ I G S +GK+T+ L + ++ +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCV 55
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 25.9 bits (58), Expect = 5.6
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 27 IVGSSGNGKSTIV-ALLERFYD 47
++G+ G G+ I L+ + D
Sbjct: 10 LLGAHGVGRRHIKNTLITKHPD 31
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 26.4 bits (58), Expect = 5.7
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 19 IPAGQKVAIVGSSGNGKSTIVA 40
+ G++G GK+ +V+
Sbjct: 278 FFKDSIILATGATGTGKTLLVS 299
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 26.5 bits (58), Expect = 6.0
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 20/85 (23%)
Query: 22 GQKVAIVGSSGNGKSTI-VALLERFYDVSSGNITISGVDLKHLDGT-------------W 67
G V + G SG GKS + L+ + + + +++ L
Sbjct: 147 GVGVLLTGRSGIGKSECALDLINKNHLF----VGDDAIEIYRLGNRLFGRAQEVAKKFME 202
Query: 68 LRGNVIGLINQEPVLFATSVRENIR 92
+RG G+IN E ++
Sbjct: 203 IRGL--GIINVERFYGLQITKQRTE 225
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.5 bits (57), Expect = 6.0
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 1 MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALLER 44
+ ++ + K+ + ++ ++G GKST + AL+
Sbjct: 51 LERDIEDITIASKNLQQGVF---RLLVLGDMKRGKSTFLNALIGE 92
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.3 bits (59), Expect = 6.1
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
+ LK LK G+ + G SG GKS+++ +
Sbjct: 159 GIEELKEYLK--------GKISTMAGLSGVGKSSLLNAI 189
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 26.5 bits (59), Expect = 6.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVS 49
+ P G KVAI+G G G T + L + S
Sbjct: 490 KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTS 521
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 26.2 bits (57), Expect = 6.3
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERFYDVSSGNITI 55
V I G + GKS + AL++R + + ++
Sbjct: 16 KMGVLITGEANIGKSELSLALIDRGHQLVCDDVID 50
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 26.3 bits (57), Expect = 6.7
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST-IVALLE 43
LR L+ +LKD + + + V + G G GK+ I++ +
Sbjct: 143 KLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 26.0 bits (56), Expect = 7.1
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Query: 25 VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD-LKHLDGTWLRGNVIGLINQEPVLF 83
+ + G +GK T + Y + D L + G + + ++
Sbjct: 4 IFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEG 63
Query: 84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF 119
RE +E+A N I
Sbjct: 64 IDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGV 99
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 26.2 bits (57), Expect = 7.4
Identities = 15/141 (10%), Positives = 40/141 (28%), Gaps = 24/141 (17%)
Query: 5 LRRLKTILKDFNLRIPAGQK-VAIVGSSGNGKSTIVALLERFYDVSSGN------ITISG 57
+ + ++ ++ A+V G + +A ++ +V+ I
Sbjct: 101 VEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVP 160
Query: 58 VDLKHLDGTWLR--GNVIGLINQ--EPVLF-ATSVRENIR------------YGDSSVSD 100
+D HL L + + P F + + + + + +
Sbjct: 161 MDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTS 220
Query: 101 EQIEEAAKLANAHGFISEFPS 121
E+ +K + P
Sbjct: 221 SVFEKLSKTFSQTIPDIFVPG 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 26.0 bits (58), Expect = 7.6
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
+L + + + G SG GKS+++
Sbjct: 163 SLADIIPHFQ--------DKTTVFAGQSGVGKSSLL 190
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 25.9 bits (58), Expect = 7.6
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 27 IVGSSGNGKSTIV-ALLERF 45
I G SG GKST++ L +
Sbjct: 6 ISGPSGTGKSTLLKKLFAEY 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 25.7 bits (57), Expect = 7.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 19 IPAGQKVAIVGSSGNGKSTI 38
IP G +A+ G G GK+
Sbjct: 20 IPQGFFIALTGEPGTGKTIF 39
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 26.0 bits (58), Expect = 7.7
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56
L++ R+ + + I G+ G ++ L + NI I+
Sbjct: 119 LEEEIGRV-KDKNIVIYGAGGAARAVAFELAKD------NNIIIA 156
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM;
1.90A {Hordeum vulgare} SCOP: a.93.1.1
Length = 309
Score = 26.0 bits (58), Expect = 7.7
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 134 AALESACKGRTV 145
LE C+G V
Sbjct: 93 DRLERECRGAVV 104
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.0 bits (57), Expect = 8.0
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 16 NLRIPAGQK---VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
N + P G + + + G + +GKS++ A + + + + V + D
Sbjct: 13 NHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease
asparagine switch; 1.30A {Staphylococcus aureus subsp}
SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Length = 291
Score = 25.8 bits (56), Expect = 8.0
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 18 RIPAGQKVAIVGSSGNGKST 37
++ AG ++A GS+GN ST
Sbjct: 246 KVKAGDQIAYSGSTGN--ST 263
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 26.0 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 12 LKDFNLRIPAGQKVAIVGSSG 32
LK NL AG VAI G++G
Sbjct: 162 LKSANLM--AGHWVAISGAAG 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 25.5 bits (57), Expect = 8.8
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERF 45
G + + G SG GK T+ + E
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 25.7 bits (56), Expect = 8.9
Identities = 18/141 (12%), Positives = 45/141 (31%), Gaps = 25/141 (17%)
Query: 6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALL--ERFYDVSSGNITISGVDLKH 62
+L +L + + ++G G GKS+ V +++ S G
Sbjct: 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVV---SISPFQSEGPRPVM 79
Query: 63 LDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE------AAKLANAHGFI 116
+ + G + +I+ P L + ++ K + ++
Sbjct: 80 VSRSR-AGFTLNIIDT-PGLI-----------EGGYINDMALNIIKSFLLDKTIDVLLYV 126
Query: 117 SEFPSGALDNESEKLVQAALE 137
+ +DN + + +A +
Sbjct: 127 DRLDAYRVDNLDKLVAKAITD 147
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 25.6 bits (57), Expect = 9.0
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 24 KVAIVGSSGNGKSTIVALLERF----YDVSSGNITISGVDLK 61
K+ ++G +GK++ L F + TI G+D
Sbjct: 8 KIVVLGDGASGKTS---LTTCFAQETFGKQYKQ-TI-GLDFF 44
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 25.5 bits (55), Expect = 9.1
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 16 NLRIPAGQKVAIVGSSGNGKSTIVALLER 44
++ P G + I G+ G GK+++ ++
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAA 32
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 25.6 bits (57), Expect = 9.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 22 GQKVAIVGSSGNGKSTIV-ALLERFYDVSSGNITIS 56
+ + G SG GK T++ +L F S
Sbjct: 12 IPPLVVCGPSGVGKGTLIKKVLSEFPS----RFRFS 43
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: MSE 2PE SO4; 1.60A
{Ruminococcus gnavus}
Length = 252
Score = 25.7 bits (56), Expect = 9.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 18 RIPAGQKVAIVGSSGNGK 35
+ AG + +G SG G+
Sbjct: 189 PVKAGDLLGYMGDSGYGE 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 25.7 bits (56), Expect = 9.8
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALLERFYDVSSGNITIS 56
+ L ++ G+ V +VG + GKST + +++ F D + IT S
Sbjct: 146 GIAELADAIE----YYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTS 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.364
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,706,374
Number of extensions: 164957
Number of successful extensions: 1252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 334
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)