BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10473
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R699|ATG4A_PONAB Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1
Length = 398
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
D T+HC Q+ R++IL++DPS+A+ F CK E DF + CS ++ E+ E +FEL++
Sbjct: 297 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 356
Query: 79 EDWTPTQP 86
W P P
Sbjct: 357 SHWPPFVP 364
>sp|Q8WYN0|ATG4A_HUMAN Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1
Length = 398
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
D T+HC Q+ R++IL++DPS+A+ F CK E DF + CS ++ E+ E +FEL++
Sbjct: 297 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 356
Query: 79 EDWTPTQP 86
W P P
Sbjct: 357 SHWPPFVP 364
>sp|Q6PZ05|ATG4A_BOVIN Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1
Length = 398
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
D T+HC Q R++IL++DPS+A+ F CK E DF S CS ++ E+ E +FEL++
Sbjct: 297 DQTFHCLQPPQRMNILNLDPSVALGFFCKEEKDFDSWCSLVQKEILKENLRMFELVQKHP 356
Query: 79 EDWTPTQP 86
W P P
Sbjct: 357 SHWPPFVP 364
>sp|Q8C9S8|ATG4A_MOUSE Cysteine protease ATG4A OS=Mus musculus GN=Atg4a PE=2 SV=2
Length = 396
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
D T+HC Q+ R+ IL++DPS+A+ F CK E DF + CS ++ E+ E +FEL++
Sbjct: 294 DQTFHCLQSPQRMSILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 353
Query: 79 EDWTPTQP 86
W P P
Sbjct: 354 SHWPPFVP 361
>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2
Length = 394
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
D +YHC R+HI +DPSIA F C+TE+DF C+QIR P+FEL++
Sbjct: 298 DDSYHCQHPPCRMHICELDPSIAAGFFCQTEDDFDDWCAQIRKVSNCRGLPMFELVDS-- 355
Query: 79 EDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
+PS+L + + R+ + D++FE L
Sbjct: 356 --------QPSHLITADVLNLTPDFSDSDRLERFFDSEDEEFEIL 392
>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2
Length = 393
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIEDP 77
D ++HC R+ I +DPSIAV F CKTE+DF C Q++ L P+FEL+E
Sbjct: 296 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVE-- 353
Query: 78 IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
+PS+L + S R+ + D+DFE L
Sbjct: 354 --------LQPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEIL 391
>sp|Q6PZ03|ATG4B_BOVIN Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1
Length = 393
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQI-RAELRPEQQPLFELIEDP 77
D ++HC R+ I +DPSIAV F C+TE+DF C Q+ + L P+FEL+E
Sbjct: 296 DESFHCQHPPGRMSIAELDPSIAVGFFCETEDDFNDWCQQVSKLSLLGGALPMFELVEQ- 354
Query: 78 IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
+PS+L + S R+ + D+DFE L
Sbjct: 355 ---------QPSHLACPDVLNLSLDSSDAERLERFFDSEDEDFEIL 391
>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2
Length = 393
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR-PEQQPLFELIEDP 77
D ++HC SR+ I +DPSIAV F CKTE DF C Q++ + P+FEL+E
Sbjct: 296 DESFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQ- 354
Query: 78 IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
+PS+L + S R+ + D+DFE L
Sbjct: 355 ---------QPSHLACQDVLNLSLDSSDVERLERFFDSEDEDFEIL 391
>sp|Q5ZIW7|ATG4A_CHICK Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A PE=2 SV=1
Length = 380
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ-PLFELIE 75
D ++HC QA R+ I+++DPS+A+ F CK E DF + CS ++ E+ +Q +FEL++
Sbjct: 280 DQSFHCQQAPHRMKIMNLDPSVALGFFCKEECDFDNWCSLVQKEILKQQSLRMFELVQ 337
>sp|Q6GPU1|ATG4A_XENLA Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a PE=2 SV=1
Length = 397
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ-PLFEL 73
D TYHC + + + +L++DPS+A+ F CK ENDF + C I E+ Q +FEL
Sbjct: 297 DQTYHCQKGPNSMKVLNLDPSVALGFFCKDENDFNNWCEVIEKEILKHQSLRMFEL 352
>sp|Q6PZ02|ATG4B_CHICK Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B PE=2 SV=1
Length = 393
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIEDP 77
D ++HC R+ I +DPSIAV F C TE DF C QI+ L P+FEL+E
Sbjct: 296 DESFHCQHPPCRMSIAELDPSIAVGFFCHTEEDFNDWCHQIKKLSLVRGALPMFELVER- 354
Query: 78 IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
+PS+ + + R+ + D+DFE L
Sbjct: 355 ---------QPSHFSNPDVLNLTPDSSDADRLERFFDSEDEDFEIL 391
>sp|Q640G7|ATG4B_XENLA Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b PE=2 SV=1
Length = 384
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIE 75
D ++HC R+H+ +DPSIAV F C ++ DF C I+ L P+FE+++
Sbjct: 287 DESFHCQHPPCRMHVSEIDPSIAVGFFCSSQEDFEDWCQHIKKLSLSGGALPMFEVVD 344
>sp|Q75KP8|ATG4A_ORYSJ Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A
PE=3 SV=1
Length = 474
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 DKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL--RPEQ 67
D D+ + S+YHC L + +DPS+A+ F C+ ++DF CS+ +EL +
Sbjct: 367 DIAADNLEAGTSSYHCSTVRDLALDLIDPSLAIGFYCRDKDDFDDFCSR-ASELVDKANG 425
Query: 68 QPLFELIE 75
PLF +++
Sbjct: 426 APLFTVVQ 433
>sp|Q811C2|ATG4C_MOUSE Cysteine protease ATG4C OS=Mus musculus GN=Atg4c PE=2 SV=2
Length = 458
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR---PEQQPLFELIEDPI 78
T+HCP ++ MDPS + F C+ DF +I L+ E+ PLF +
Sbjct: 364 TFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERASEEITKMLKISSKEKYPLFTFVNGHS 423
Query: 79 EDWTPTQPRPS 89
+D+ T S
Sbjct: 424 KDFDFTSTAAS 434
>sp|Q7XPW8|ATG4B_ORYSJ Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B
PE=2 SV=1
Length = 478
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 10 DKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPEQQ 68
D D+ + S+YHC L + +DPS+A+ F C+ ++DF CS+ + +
Sbjct: 370 DIAADNIEADTSSYHCSTVRDLALDLIDPSLAIGFYCRDKDDFDDFCSRATELVDKANGA 429
Query: 69 PLFELIE 75
PLF +++
Sbjct: 430 PLFTVVQ 436
>sp|Q2XPP4|ATG4B_ORYSI Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1
SV=2
Length = 478
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 10 DKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPEQQ 68
D D+ + S+YHC L + +DPS+A+ F C+ ++DF CS+ + +
Sbjct: 370 DIAADNIEADTSSYHCSTVRDLALDLIDPSLAIGFYCRDKDDFDDFCSRATELVDKANGA 429
Query: 69 PLFELIE 75
PLF +++
Sbjct: 430 PLFTVVQ 436
>sp|Q96DT6|ATG4C_HUMAN Cysteine protease ATG4C OS=Homo sapiens GN=ATG4C PE=2 SV=1
Length = 458
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR---PEQQPLFELIEDPI 78
T+HCP ++ MDPS + F C+ DF +I L+ E+ PLF +
Sbjct: 364 TFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVNGHS 423
Query: 79 EDWTPT 84
D+ T
Sbjct: 424 RDYDFT 429
>sp|A2XHJ5|ATG4A_ORYSI Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3
SV=1
Length = 473
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 DKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL--RPEQ 67
D D+ + S+YHC L + +DPS+A+ F C+ ++DF CS+ +EL +
Sbjct: 366 DIAADNLEADTSSYHCSTVRDLALDLIDPSLAIGFYCRDKDDFDDFCSRA-SELVDKANG 424
Query: 68 QPLFELIE 75
PLF +++
Sbjct: 425 APLFTVMQ 432
>sp|A7KAL5|ATG4_PENCW Probable cysteine protease atg4 OS=Penicillium chrysogenum (strain
ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg4 PE=3
SV=1
Length = 401
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 7 GVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRA 61
G+Y +E+ LDS Y+ + R+HI MDPS+ + FL K E+D+A +IR+
Sbjct: 314 GLYTQEE-----LDS-YYTSRLRRIHIKDMDPSMLIGFLVKDEDDWADWKKRIRS 362
>sp|Q68FJ9|ATG4D_XENLA Cysteine protease ATG4D OS=Xenopus laevis GN=atg4d PE=2 SV=1
Length = 469
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRP----EQQPLFELIEDP 77
++HC ++ I MDPS F K DF LC + L E+ P+F + E
Sbjct: 375 SFHCNSPRKISITRMDPSCTFAFYAKNSEDFGKLCDHLMKVLHSPRAEEKYPIFSISEGQ 434
Query: 78 IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
+++ P+ S + P C ++ P V S D+FEFL
Sbjct: 435 AQEYA-EGPQSS----SHPPVCR--KKGPL----VKRPSSDEFEFL 469
>sp|A2QY50|ATG4_ASPNC Probable cysteine protease atg4 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=atg4 PE=3 SV=1
Length = 404
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 15 SEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRA 61
S++++D TYH + R+H+ MDPS+ + FL + + D+A +I A
Sbjct: 325 SKEEVD-TYHTRRLRRIHVRDMDPSMLIGFLIRNQEDWADWLKRIEA 370
>sp|A2Q1V6|ATG4_MEDTR Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1
Length = 487
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 8 VYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQ 67
V + D+++ S+YHC + + + +DPS+A+ F C+ ++DF CS RA E+
Sbjct: 376 VVNITGDTQEPNTSSYHCNISRHMPLDSIDPSLAIGFYCRDKDDFDDFCS--RATKLAEE 433
Query: 68 Q---PLFELIE 75
PLF + +
Sbjct: 434 SNGAPLFTVAQ 444
>sp|P0CQ10|ATG4_CRYNJ Cysteine protease ATG4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=ATG4 PE=3
SV=1
Length = 1193
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQI 59
TYHC + ++ + +DPS+ + F+CK E+DF ++
Sbjct: 952 TYHCEKIKKMPLSGLDPSMLLGFVCKDEDDFEDFVERV 989
>sp|P0CQ11|ATG4_CRYNB Cysteine protease ATG4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=ATG4 PE=3 SV=1
Length = 1193
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQI 59
TYHC + ++ + +DPS+ + F+CK E+DF ++
Sbjct: 952 TYHCEKIKKMPLSGLDPSMLLGFVCKDEDDFEDFVERV 989
>sp|Q684M2|ATG4D_PIG Cysteine protease ATG4D OS=Sus scrofa GN=ATG4D PE=3 SV=1
Length = 469
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR----PEQQPLFELIEDP 77
++HC ++ MDPS V F +F +LCS++ L E+ P+F L+E
Sbjct: 370 SFHCTSPRKMAFTKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLVEGH 429
Query: 78 IEDWTPTQPRPSNLGGTSSPSCSSMRRQPR--RVSGVGEGSDDDFEFL 123
+D +L S R PR R+ S +DF FL
Sbjct: 430 AQD--------HSLDDLCSQPSQPTLRLPRTGRLLKAKRPSSEDFVFL 469
>sp|Q2U5B0|ATG4_ASPOR Probable cysteine protease atg4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=atg4 PE=3 SV=2
Length = 407
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDF 52
STYH + R+HI MDPS+ + FL + E+D+
Sbjct: 333 STYHTRRLRRIHIQDMDPSMLIGFLVRNEDDW 364
>sp|Q5XH30|ATG4C_XENLA Cysteine protease ATG4C OS=Xenopus laevis GN=atg4c PE=2 SV=1
Length = 450
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR---PEQQPLFELIEDPI 78
++HCP ++ MDPS V F C+ +F ++ L+ + PLF +
Sbjct: 355 SFHCPSPKKMSFKKMDPSCTVGFYCRNAREFEKAAEELTKVLKSSTKQNYPLFTFVNGHA 414
Query: 79 ED 80
+D
Sbjct: 415 QD 416
>sp|Q86TL0|ATG4D_HUMAN Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D PE=2 SV=1
Length = 474
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR----PEQQPLFELIEDP 77
++HC ++ MDPS V F +F +LCS++ L E+ P+F L E
Sbjct: 375 SFHCTSPRKMAFAKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLAEGH 434
Query: 78 IED 80
+D
Sbjct: 435 AQD 437
>sp|Q68EP9|ATG4C_XENTR Cysteine protease ATG4C OS=Xenopus tropicalis GN=atg4c PE=2 SV=1
Length = 450
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR---PEQQPLFELIEDPI 78
++HCP ++ MDPS + F C+ +F ++ L+ + PLF +
Sbjct: 355 SFHCPSPKKMSFKKMDPSCTIGFYCRNAREFEKAAEELTKVLKSSTKQNYPLFTFVNGHA 414
Query: 79 ED 80
+D
Sbjct: 415 QD 416
>sp|A7F045|ATG4_SCLS1 Probable cysteine protease atg4 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=atg4 PE=3 SV=2
Length = 439
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 24 HCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIR 60
H + RLHI MDPS+ + FL + END+ +R
Sbjct: 358 HTRRLRRLHIKEMDPSMLIAFLIRDENDWKDWRRAVR 394
>sp|Q5B7L0|ATG4_EMENI Cysteine protease atg4 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg4 PE=3
SV=2
Length = 402
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIED 76
+TYH + RL+I MDPS+ + FL + E+D+ ++I + E +P+ ++ +
Sbjct: 324 NTYHTRRLRRLNIQDMDPSMLIGFLIRDEDDWEDWKARI---MSLEGKPIITILSE 376
>sp|Q8BGV9|ATG4D_MOUSE Cysteine protease ATG4D OS=Mus musculus GN=Atg4d PE=1 SV=1
Length = 474
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR----PEQQPLFELIEDP 77
++HC ++ MDPS V F +F +LCS++ L E+ P+F + E
Sbjct: 375 SFHCTSPRKMAFAKMDPSCTVGFYAGNRKEFETLCSELMRILSSSSVTERYPMFTVAEGH 434
Query: 78 IED 80
+D
Sbjct: 435 AQD 437
>sp|A6SDQ3|ATG4_BOTFB Probable cysteine protease atg4 OS=Botryotinia fuckeliana (strain
B05.10) GN=atg4 PE=3 SV=1
Length = 439
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 24 HCPQASRLHILHMDPSIAVCFLCKTENDF 52
H + RLHI MDPS+ + FL + END+
Sbjct: 358 HTRRLRRLHIKEMDPSMLIAFLIRDENDW 386
>sp|Q8S929|ATG4A_ARATH Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1
Length = 467
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ---PLFELIEDP 77
S+YHC + + +DPS+A+ F C+ ++DF C +RA E+ PLF + +
Sbjct: 384 SSYHCNVLRYVPLESLDPSLALGFYCRDKDDFDDFC--LRALKLAEESNGAPLFTVTQ-- 439
Query: 78 IEDWTPTQPRPSNLG 92
T T SN G
Sbjct: 440 ----THTAINQSNYG 450
>sp|A1CJ08|ATG4_ASPCL Probable cysteine protease atg4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=atg4 PE=3 SV=1
Length = 400
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQI 59
+TYH + R+HI MDPS+ + F+ ++ D+ ++I
Sbjct: 328 NTYHTRRLRRIHIKDMDPSMLIGFIIRSREDWTDWKTRI 366
>sp|Q9M1Y0|ATG4B_ARATH Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1
Length = 477
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRA 61
S+YHC + + +DPS+A+ F C+ ++DF C IRA
Sbjct: 388 SSYHCNTLRYVPLESLDPSLALGFYCQHKDDFDDFC--IRA 426
>sp|Q8NJJ3|ATG4_PICPA Probable cysteine protease ATG4 OS=Komagataella pastoris GN=ATG4
PE=3 SV=1
Length = 533
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 27 QASRLHILHMDPSIAVCFLCKTENDF 52
+ ++LH+ HMDPS+ + FL +E+DF
Sbjct: 372 KVTKLHLSHMDPSMLIGFLITSEDDF 397
>sp|Q7S3X7|ATG4_NEUCR Probable cysteine protease atg-4 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=atg-4 PE=3 SV=1
Length = 506
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 22 TYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIR 60
T H + +LHI MDPS+ + FL K E+D+ + S ++
Sbjct: 423 TCHTRRLRQLHIGDMDPSMLIGFLIKDEDDWDTWKSSVK 461
>sp|Q4U3V5|ATG4_CRYPA Probable cysteine protease ATG4 OS=Cryphonectria parasitica GN=ATG4
PE=2 SV=1
Length = 459
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDF 52
+T H + RLH+ MDPS+ + FL K E+D+
Sbjct: 382 NTCHTRRLRRLHVRDMDPSMLIGFLIKDEDDW 413
>sp|Q6CH28|ATG4_YARLI Probable cysteine protease ATG4 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ATG4 PE=3 SV=1
Length = 545
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRA 61
+++H + +LH+ MDPS+ V F +E D+ + + A
Sbjct: 339 TSFHSSRIWKLHLKEMDPSMLVGFYITSEADWETFKGSLTA 379
>sp|Q1E5M9|ATG4_COCIM Probable cysteine protease ATG4 OS=Coccidioides immitis (strain RS)
GN=ATG4 PE=3 SV=1
Length = 432
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 15 SEKKLDSTYHCPQASRLHILHMDPSIAVCFLC 46
S + LD TYH + RLHI MDPS+ + FL
Sbjct: 349 SPENLD-TYHTRRLRRLHIREMDPSMLIGFLI 379
>sp|Q0U199|ATG4_PHANO Probable cysteine protease ATG4 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=ATG4 PE=3 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 21 STYHCPQASRLHILHMDPSIAVCFLCKTENDF 52
ST H + RL I MDPS+ + FL +E D+
Sbjct: 390 STCHTRRIRRLQIREMDPSMLLAFLVTSEADY 421
>sp|O70343|PRGC1_MOUSE Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Mus musculus GN=Ppargc1a PE=1 SV=1
Length = 797
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 28 ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPR 87
A+ H + +P+I KTEN +++ I + +P+++P EL++ + P +
Sbjct: 169 ANHTHRIRTNPAIV-----KTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTK 223
Query: 88 PSNLGGTSSPSCSSMRR 104
P+ +S C+S ++
Sbjct: 224 PTENRNSSRDKCASKKK 240
>sp|Q9QYK2|PRGC1_RAT Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Rattus norvegicus GN=Ppargc1a PE=2 SV=1
Length = 796
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 28 ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPR 87
A+ H + +P+I KTEN +++ I + +P+++P EL++ + P +
Sbjct: 168 ANHTHRIRTNPAIV-----KTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTK 222
Query: 88 PSNLGGTSSPSCSSMRR 104
P+ +S C+S ++
Sbjct: 223 PTENRNSSRDKCASKKK 239
>sp|Q86ZL5|ATG4_PODAS Probable cysteine protease ATG4 OS=Podospora anserina GN=ATG4 PE=3
SV=1
Length = 500
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 17 KKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIR 60
++LDS H + LH+ MDPS+ + FL K E+D+ S ++
Sbjct: 413 EELDSC-HTRRLRHLHVEDMDPSMLIGFLIKDEDDWDLWKSSVK 455
>sp|Q865B6|PRGC1_PIG Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Sus scrofa GN=PPARGC1A PE=2 SV=1
Length = 796
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 28 ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPR 87
A+ H + +P++ KTEN +++ I + +P+++P EL++ + P +
Sbjct: 168 ANHNHRIRTNPAVV-----KTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTK 222
Query: 88 PSNLGGTSSPSCSSMRR 104
P+ +S C+S ++
Sbjct: 223 PTETRNSSRDKCTSKKK 239
>sp|Q9UBK2|PRGC1_HUMAN Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Homo sapiens GN=PPARGC1A PE=1 SV=1
Length = 798
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 28 ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPR 87
A+ H + +P+I KTEN +++ I + +P+++P EL++ + P +
Sbjct: 170 ANHNHRIRTNPAIV-----KTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTK 224
Query: 88 PSNLGGTSSPSCSSMRR 104
P+ +S C+S ++
Sbjct: 225 PTENRNSSRDKCTSKKK 241
>sp|Q6ZS17|FA65A_HUMAN Protein FAM65A OS=Homo sapiens GN=FAM65A PE=1 SV=1
Length = 1223
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 43 CFLCKTENDFASLCSQIRAELRPEQQPLFE-----LIEDPIEDWTPTQPRP 88
CFLC E + C+Q A L Q L E +ED + P +P+P
Sbjct: 984 CFLCPVERVLLTFCNQYGARLSLRQPGLAEAVCVKFLEDALGQKLPRRPQP 1034
>sp|Q865B7|PRGC1_BOVIN Peroxisome proliferator-activated receptor gamma coactivator
1-alpha OS=Bos taurus GN=PPARGC1A PE=2 SV=1
Length = 796
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 28 ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPR 87
A+ H + +P++ KTEN +++ I + +P+++P EL++ + P +
Sbjct: 168 ANHNHRIRTNPAVV-----KTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTK 222
Query: 88 PSNLGGTSSPSCSSMRR 104
P+ +S C+S ++
Sbjct: 223 PTENRNSSRDKCTSKKK 239
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3
SV=1
Length = 1202
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 36 MDPSIAVCF--LCK----------TENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTP 83
+DP++ C+ CK + C RA+L P Q +FE++ + TP
Sbjct: 901 IDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNP--QDIFEVVRYQSPNTTP 958
Query: 84 TQPRPSNLGG----TSSPSCSSMRRQPRRVS 110
T+ PS++GG +SS R RR++
Sbjct: 959 TEQTPSSIGGDNVYSSSQPPPPPRISLRRIN 989
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,812,757
Number of Sequences: 539616
Number of extensions: 2149997
Number of successful extensions: 4928
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4872
Number of HSP's gapped (non-prelim): 65
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)