Query psy10473
Match_columns 124
No_of_seqs 109 out of 202
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 19:06:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2674|consensus 99.8 1.6E-21 3.5E-26 166.8 6.7 74 6-83 301-375 (409)
2 PF03416 Peptidase_C54: Peptid 99.5 1.4E-14 3E-19 118.2 3.4 41 20-60 238-278 (278)
3 PF00169 PH: PH domain; Inter 62.0 9 0.00019 24.2 2.6 23 41-63 81-103 (104)
4 PHA02975 hypothetical protein; 55.0 17 0.00036 24.8 3.0 21 44-64 12-32 (69)
5 PHA02650 hypothetical protein; 49.0 21 0.00046 25.0 2.8 21 44-64 12-32 (81)
6 smart00233 PH Pleckstrin homol 48.8 19 0.00041 21.9 2.4 24 40-63 78-101 (102)
7 cd09012 Glo_EDI_BRP_like_24 Th 44.4 27 0.00058 23.5 2.8 22 40-61 70-91 (124)
8 cd03073 PDI_b'_ERp72_ERp57 PDI 40.9 47 0.001 23.4 3.7 37 40-76 17-59 (111)
9 PF12253 CAF1A: Chromatin asse 39.5 21 0.00045 24.5 1.6 10 74-83 8-17 (77)
10 cd00821 PH Pleckstrin homology 39.2 27 0.00059 21.0 2.0 22 40-61 74-95 (96)
11 PHA02819 hypothetical protein; 38.3 32 0.00069 23.6 2.4 21 44-64 12-32 (71)
12 PHA02844 putative transmembran 37.9 33 0.00072 23.8 2.4 21 44-64 12-32 (75)
13 PF11478 Tachystatin_B: Antimi 37.8 8 0.00017 23.6 -0.6 10 38-47 17-26 (42)
14 PF12575 DUF3753: Protein of u 36.8 36 0.00079 23.3 2.5 21 44-64 12-32 (72)
15 PHA03054 IMV membrane protein; 35.8 49 0.0011 22.7 3.0 21 44-64 12-32 (72)
16 PF00903 Glyoxalase: Glyoxalas 34.6 46 0.00099 21.5 2.7 23 40-62 75-97 (128)
17 cd07255 Glo_EDI_BRP_like_12 Th 34.2 44 0.00096 22.1 2.6 22 40-61 66-87 (125)
18 PHA02692 hypothetical protein; 33.7 44 0.00095 22.9 2.4 21 44-64 12-32 (70)
19 cd00900 PH-like Pleckstrin hom 33.5 49 0.0011 20.1 2.5 23 39-61 76-98 (99)
20 cd01230 PH_EFA6 EFA6 Pleckstri 32.6 48 0.001 24.0 2.7 25 40-64 88-112 (117)
21 smart00545 JmjN Small domain f 32.2 70 0.0015 19.4 3.0 36 45-82 5-41 (42)
22 cd08346 PcpA_N_like N-terminal 31.6 52 0.0011 21.4 2.6 23 40-62 75-97 (126)
23 cd07235 MRD Mitomycin C resist 30.3 61 0.0013 21.4 2.8 23 39-61 67-89 (122)
24 PHA00527 hypothetical protein 30.3 37 0.0008 25.4 1.8 19 43-61 22-40 (129)
25 cd07251 Glo_EDI_BRP_like_10 Th 30.0 64 0.0014 20.9 2.8 24 38-61 64-87 (121)
26 cd01225 PH_Cool_Pix Cool (clon 29.6 54 0.0012 24.1 2.5 25 35-62 84-108 (111)
27 cd07241 Glo_EDI_BRP_like_3 Thi 29.2 61 0.0013 21.1 2.6 23 40-62 72-94 (125)
28 cd09013 BphC-JF8_N_like N-term 27.7 66 0.0014 21.4 2.6 21 41-61 65-85 (121)
29 cd08362 BphC5-RrK37_N_like N-t 25.9 75 0.0016 20.8 2.6 22 40-61 60-81 (120)
30 PRK06724 hypothetical protein; 25.1 73 0.0016 22.5 2.5 21 41-61 66-86 (128)
31 cd07240 ED_TypeI_classII_N N-t 24.5 83 0.0018 20.3 2.6 21 41-61 60-80 (117)
32 cd01241 PH_Akt Akt pleckstrin 24.4 69 0.0015 22.0 2.2 20 43-62 82-101 (102)
33 cd07242 Glo_EDI_BRP_like_6 Thi 24.1 84 0.0018 20.9 2.6 22 40-61 70-91 (128)
34 cd06404 PB1_aPKC PB1 domain is 22.2 85 0.0018 22.0 2.3 32 31-73 11-43 (83)
35 cd01245 PH_RasGAP_CG5898 RAS G 21.9 96 0.0021 21.8 2.6 30 32-61 67-97 (98)
36 PF03108 DBD_Tnp_Mut: MuDR fam 21.7 90 0.002 19.6 2.2 25 37-61 1-25 (67)
37 cd07266 HPCD_N_class_II N-term 21.7 1E+02 0.0022 20.3 2.6 23 39-61 61-83 (121)
38 PF07433 DUF1513: Protein of u 21.4 49 0.0011 28.1 1.2 19 24-42 123-142 (305)
39 cd08361 PpCmtC_N N-terminal do 21.2 1E+02 0.0022 20.9 2.6 22 40-61 61-82 (124)
40 cd08364 FosX FosX, a fosfomyci 21.0 77 0.0017 21.9 2.0 19 42-61 70-88 (131)
41 cd01222 PH_clg Clg (common-sit 20.9 1.3E+02 0.0028 21.1 3.0 27 37-63 69-95 (97)
No 1
>KOG2674|consensus
Probab=99.84 E-value=1.6e-21 Score=166.80 Aligned_cols=74 Identities=32% Similarity=0.695 Sum_probs=60.6
Q ss_pred ccCCCCCCCcccccCccccCCCccccccccCCccceeecccCChHHHHHHHHHHHHhhc-CCCCCcEEEecCCCCCCCC
Q psy10473 6 IGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR-PEQQPLFELIEDPIEDWTP 83 (124)
Q Consensus 6 ~~~~~~~~~~~~~~d~SyHC~~prrm~i~~mDPS~alGFyC~te~DFedl~~~i~~~l~-~~~~PLF~v~e~rp~~~~~ 83 (124)
|+|.....++ ++||||+.||||+|.+|||||||||||++++||++||.+++++++ ..+.++|.+...+|.||..
T Consensus 301 V~vs~~~~~~----~esfHC~~~~km~f~~mDPS~alGF~c~~~~dF~~~c~~l~k~~~~s~~~~~~~lf~~~~~h~~~ 375 (409)
T KOG2674|consen 301 VEVSKAKDVP----DETFHCQSLRKMAFEDMDPSLALGFYCKDEDDFDNLCSELKKSLSLSSALEMFELFTRVPSHWET 375 (409)
T ss_pred ccccccCCCC----ccccccCchhhcchhhcCcceEEEEEecCHHHHHHHHHHHHHHhccccCcccccceecccccccc
Confidence 3444445566 889999999999999999999999999999999999999999776 5554556666677777753
No 2
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=99.49 E-value=1.4e-14 Score=118.18 Aligned_cols=41 Identities=41% Similarity=0.993 Sum_probs=37.2
Q ss_pred CccccCCCccccccccCCccceeecccCChHHHHHHHHHHH
Q psy10473 20 DSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIR 60 (124)
Q Consensus 20 d~SyHC~~prrm~i~~mDPS~alGFyC~te~DFedl~~~i~ 60 (124)
++||||..+++|++++|||||||||||+|++||++||++|+
T Consensus 238 ~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~~~~i~ 278 (278)
T PF03416_consen 238 DSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDFCKRIQ 278 (278)
T ss_dssp -GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 48999999999999999999999999999999999999986
No 3
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=61.97 E-value=9 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.1
Q ss_pred eeecccCChHHHHHHHHHHHHhh
Q psy10473 41 AVCFLCKTENDFASLCSQIRAEL 63 (124)
Q Consensus 41 alGFyC~te~DFedl~~~i~~~l 63 (124)
.+=|.|.|+++...|.+.|+..+
T Consensus 81 ~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 81 SYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHh
Confidence 56688999999999999999864
No 4
>PHA02975 hypothetical protein; Provisional
Probab=55.00 E-value=17 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.1
Q ss_pred cccCChHHHHHHHHHHHHhhc
Q psy10473 44 FLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 44 FyC~te~DFedl~~~i~~~l~ 64 (124)
|+-.+.+||++|.+-++.++.
T Consensus 12 FmsS~DdDF~nFI~vVksVLt 32 (69)
T PHA02975 12 FLESNDSDFEDFIDTIMHVLT 32 (69)
T ss_pred hcCCChHHHHHHHHHHHHHHc
Confidence 677889999999999999887
No 5
>PHA02650 hypothetical protein; Provisional
Probab=49.00 E-value=21 Score=25.02 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=19.1
Q ss_pred cccCChHHHHHHHHHHHHhhc
Q psy10473 44 FLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 44 FyC~te~DFedl~~~i~~~l~ 64 (124)
|+-.+.+||++|.+-++.++.
T Consensus 12 FmsS~DdDFnnFI~VVkSVLt 32 (81)
T PHA02650 12 FMSSTDDDFNNFIDVVKSVLS 32 (81)
T ss_pred hcCCcHHHHHHHHHHHHHHHc
Confidence 677889999999999999887
No 6
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=48.79 E-value=19 Score=21.93 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=21.2
Q ss_pred ceeecccCChHHHHHHHHHHHHhh
Q psy10473 40 IAVCFLCKTENDFASLCSQIRAEL 63 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~~l 63 (124)
..+=|.|.|+++...|...|+..+
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 478899999999999999998753
No 7
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=44.44 E-value=27 Score=23.52 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=20.5
Q ss_pred ceeecccCChHHHHHHHHHHHH
Q psy10473 40 IAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~ 61 (124)
..|+|+|.+.++.+.+++++++
T Consensus 70 ~~l~f~v~~~~~vd~~~~~l~~ 91 (124)
T cd09012 70 VLISLSADSREEVDELVEKALA 91 (124)
T ss_pred EEEEEeCCCHHHHHHHHHHHHH
Confidence 4699999999999999999988
No 8
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=40.90 E-value=47 Score=23.43 Aligned_cols=37 Identities=5% Similarity=0.084 Sum_probs=29.0
Q ss_pred ceeecccC----ChHHHHHHHHHHHHhhc-CC-CCCcEEEecC
Q psy10473 40 IAVCFLCK----TENDFASLCSQIRAELR-PE-QQPLFELIED 76 (124)
Q Consensus 40 ~alGFyC~----te~DFedl~~~i~~~l~-~~-~~PLF~v~e~ 76 (124)
+++.|||. +.++++.|..+++++.. -. ++=+|-+++.
T Consensus 17 l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~ 59 (111)
T cd03073 17 LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADK 59 (111)
T ss_pred eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcH
Confidence 38999988 89999999999999887 23 4566766543
No 9
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=39.48 E-value=21 Score=24.53 Aligned_cols=10 Identities=0% Similarity=-0.276 Sum_probs=5.9
Q ss_pred ecCCCCCCCC
Q psy10473 74 IEDPIEDWTP 83 (124)
Q Consensus 74 ~e~rp~~~~~ 83 (124)
-..||++|..
T Consensus 8 e~~RPpY~GT 17 (77)
T PF12253_consen 8 ENVRPPYYGT 17 (77)
T ss_pred CCCCCCEeeE
Confidence 3467777643
No 10
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=39.22 E-value=27 Score=21.02 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=20.1
Q ss_pred ceeecccCChHHHHHHHHHHHH
Q psy10473 40 IAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~ 61 (124)
-.+=|.|.|+++...|.+.|+.
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHhc
Confidence 7888999999999999999875
No 11
>PHA02819 hypothetical protein; Provisional
Probab=38.34 E-value=32 Score=23.60 Aligned_cols=21 Identities=19% Similarity=0.608 Sum_probs=18.9
Q ss_pred cccCChHHHHHHHHHHHHhhc
Q psy10473 44 FLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 44 FyC~te~DFedl~~~i~~~l~ 64 (124)
|+-.+.+||++|.+-++.++.
T Consensus 12 FmsS~DdDFnnFI~VVksVLt 32 (71)
T PHA02819 12 FMSSSDDDFNNFINVVKSVLN 32 (71)
T ss_pred hhCCchhHHHHHHHHHHHHHc
Confidence 677889999999999999876
No 12
>PHA02844 putative transmembrane protein; Provisional
Probab=37.86 E-value=33 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.0
Q ss_pred cccCChHHHHHHHHHHHHhhc
Q psy10473 44 FLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 44 FyC~te~DFedl~~~i~~~l~ 64 (124)
|+-.+.+||++|.+-++.++.
T Consensus 12 FmsS~DdDFnnFI~vVksVLt 32 (75)
T PHA02844 12 FLSSENEDFNNFIDVVKSVLS 32 (75)
T ss_pred hcCCchHHHHHHHHHHHHHHc
Confidence 677889999999999999886
No 13
>PF11478 Tachystatin_B: Antimicrobial chitin binding protein tachystatin B; InterPro: IPR020957 Tachystatin B is an antimicrobial chitin binding peptide and consists of two isotopes B1 and B2. Both structures contain a short antiparallel beta sheet with an inhibitory cysteine knot motif. Tyr(14) and Arg(17) are thought to be the essential residues for chitin binding []. ; PDB: 2DCW_A 2DCV_A.
Probab=37.78 E-value=8 Score=23.61 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=8.1
Q ss_pred ccceeecccC
Q psy10473 38 PSIAVCFLCK 47 (124)
Q Consensus 38 PS~alGFyC~ 47 (124)
-||+.|+||+
T Consensus 17 rsccfgyycr 26 (42)
T PF11478_consen 17 RSCCFGYYCR 26 (42)
T ss_dssp S-BSTTEEEE
T ss_pred CceEeEEEEc
Confidence 4899999997
No 14
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=36.79 E-value=36 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.600 Sum_probs=19.0
Q ss_pred cccCChHHHHHHHHHHHHhhc
Q psy10473 44 FLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 44 FyC~te~DFedl~~~i~~~l~ 64 (124)
|+-.+.+||++|.+-+++++.
T Consensus 12 Fmss~ddDf~~Fi~vVksVlt 32 (72)
T PF12575_consen 12 FMSSSDDDFNNFINVVKSVLT 32 (72)
T ss_pred hcCCCHHHHHHHHHHHHHHHc
Confidence 777899999999999999875
No 15
>PHA03054 IMV membrane protein; Provisional
Probab=35.76 E-value=49 Score=22.73 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=18.9
Q ss_pred cccCChHHHHHHHHHHHHhhc
Q psy10473 44 FLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 44 FyC~te~DFedl~~~i~~~l~ 64 (124)
|+-.+.+||++|.+-++.++.
T Consensus 12 F~ss~d~Df~~Fi~vV~sVl~ 32 (72)
T PHA03054 12 FMGSPEDDLTDFIEIVKSVLS 32 (72)
T ss_pred hhCCchHHHHHHHHHHHHHHc
Confidence 677889999999999999876
No 16
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=34.56 E-value=46 Score=21.51 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=21.0
Q ss_pred ceeecccCChHHHHHHHHHHHHh
Q psy10473 40 IAVCFLCKTENDFASLCSQIRAE 62 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~~ 62 (124)
.-++|.|.+.+|.+.+.+++++.
T Consensus 75 ~~i~~~~~~~~dl~~~~~~l~~~ 97 (128)
T PF00903_consen 75 HHIAFLAFDVDDLDAAYERLKAQ 97 (128)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHT
T ss_pred eeEEEEeccHHHHHHHHHHHhhc
Confidence 46899999999999999999983
No 17
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=34.21 E-value=44 Score=22.08 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.1
Q ss_pred ceeecccCChHHHHHHHHHHHH
Q psy10473 40 IAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~ 61 (124)
.-++|.+.|.++++.+++++++
T Consensus 66 ~hi~f~v~~~~~v~~~~~~l~~ 87 (125)
T cd07255 66 YHFAILLPSRADLAAALRRLIE 87 (125)
T ss_pred EEEEEECCCHHHHHHHHHHHHH
Confidence 3688999999999999999988
No 18
>PHA02692 hypothetical protein; Provisional
Probab=33.74 E-value=44 Score=22.86 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=18.7
Q ss_pred cccCChHHHHHHHHHHHHhhc
Q psy10473 44 FLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 44 FyC~te~DFedl~~~i~~~l~ 64 (124)
|+-.+.+||++|.+-++.++.
T Consensus 12 Fmss~DdDF~~Fi~vVksVLt 32 (70)
T PHA02692 12 FLSNSDEDFEEFLNIVRTVMT 32 (70)
T ss_pred hcCCCHHHHHHHHHHHHHHHc
Confidence 677788999999999999886
No 19
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=33.54 E-value=49 Score=20.06 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=21.2
Q ss_pred cceeecccCChHHHHHHHHHHHH
Q psy10473 39 SIAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 39 S~alGFyC~te~DFedl~~~i~~ 61 (124)
.-++-|.|.|.++...|...|+.
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhc
Confidence 78999999999999999999875
No 20
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=32.61 E-value=48 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.3
Q ss_pred ceeecccCChHHHHHHHHHHHHhhc
Q psy10473 40 IAVCFLCKTENDFASLCSQIRAELR 64 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~~l~ 64 (124)
--+=|-|.+++|++.|+..|+....
T Consensus 88 ~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 88 REFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4566999999999999999998654
No 21
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=32.22 E-value=70 Score=19.43 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=26.9
Q ss_pred ccCChHHHHHHHHHHHHhhc-CCCCCcEEEecCCCCCCC
Q psy10473 45 LCKTENDFASLCSQIRAELR-PEQQPLFELIEDPIEDWT 82 (124)
Q Consensus 45 yC~te~DFedl~~~i~~~l~-~~~~PLF~v~e~rp~~~~ 82 (124)
|-.|.++|.|.+.-|+++-. ..++.+.-|+ -|+.|-
T Consensus 5 f~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIv--PP~~w~ 41 (42)
T smart00545 5 FYPTMEEFKDPLAYISKIRPQAEKYGICKVV--PPKSWK 41 (42)
T ss_pred EcCCHHHHHCHHHHHHHHHHHHhhCCEEEEE--CCCCCC
Confidence 45689999999999988655 6788888774 355564
No 22
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=31.61 E-value=52 Score=21.37 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred ceeecccCChHHHHHHHHHHHHh
Q psy10473 40 IAVCFLCKTENDFASLCSQIRAE 62 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~~ 62 (124)
-.|+|.+.+.++++.+.+++++.
T Consensus 75 ~hi~f~v~~~~~~~~~~~~~~~~ 97 (126)
T cd08346 75 HHIAFSVPSEASLDAWRERLRAA 97 (126)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHc
Confidence 47999999999999999999883
No 23
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=30.32 E-value=61 Score=21.42 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.8
Q ss_pred cceeecccCChHHHHHHHHHHHH
Q psy10473 39 SIAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 39 S~alGFyC~te~DFedl~~~i~~ 61 (124)
+..|+|.|.+.+|.+.+.+++++
T Consensus 67 ~~~l~~~~~~~~dvd~~~~~l~~ 89 (122)
T cd07235 67 RIALAFLCETPAEVDALYAELVG 89 (122)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHH
Confidence 45789999999999999999987
No 24
>PHA00527 hypothetical protein
Probab=30.29 E-value=37 Score=25.36 Aligned_cols=19 Identities=16% Similarity=0.786 Sum_probs=16.1
Q ss_pred ecccCChHHHHHHHHHHHH
Q psy10473 43 CFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 43 GFyC~te~DFedl~~~i~~ 61 (124)
-.|||+..+|+.+|..+.-
T Consensus 22 v~~CR~~~EWQ~~~~~LGV 40 (129)
T PHA00527 22 VYLCRSKEEWQQACIHLGV 40 (129)
T ss_pred EEEEcChHHHHHHHHHhCC
Confidence 3689999999999998753
No 25
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.04 E-value=64 Score=20.92 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.1
Q ss_pred ccceeecccCChHHHHHHHHHHHH
Q psy10473 38 PSIAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 38 PS~alGFyC~te~DFedl~~~i~~ 61 (124)
+.+++.|.+.+.++++.+++++++
T Consensus 64 ~~~~~~~~~~~~~d~~~~~~~l~~ 87 (121)
T cd07251 64 SGITLAHNVRSEEEVDAVLARAAA 87 (121)
T ss_pred cceEEEEEcCCHHHHHHHHHHHHh
Confidence 356789999999999999999988
No 26
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.57 E-value=54 Score=24.15 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=20.1
Q ss_pred cCCccceeecccCChHHHHHHHHHHHHh
Q psy10473 35 HMDPSIAVCFLCKTENDFASLCSQIRAE 62 (124)
Q Consensus 35 ~mDPS~alGFyC~te~DFedl~~~i~~~ 62 (124)
-++|. =++|.+++|+..|...+++.
T Consensus 84 li~~i---~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 84 LIERI---VVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred CcCcE---EEEeCCHHHHHHHHHHHHhh
Confidence 34554 46899999999999999874
No 27
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.24 E-value=61 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceeecccCChHHHHHHHHHHHHh
Q psy10473 40 IAVCFLCKTENDFASLCSQIRAE 62 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~~ 62 (124)
.-|+|-+.+.++++.+++++++.
T Consensus 72 ~hi~f~v~~~~~v~~~~~~l~~~ 94 (125)
T cd07241 72 AHLAFSVGSKEAVDELTERLRAD 94 (125)
T ss_pred EEEEEECCCHHHHHHHHHHHHHC
Confidence 35999999999999999999883
No 28
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=27.75 E-value=66 Score=21.42 Aligned_cols=21 Identities=5% Similarity=0.200 Sum_probs=19.9
Q ss_pred eeecccCChHHHHHHHHHHHH
Q psy10473 41 AVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 41 alGFyC~te~DFedl~~~i~~ 61 (124)
.+||...++++++.+.+++++
T Consensus 65 h~af~v~~~~~v~~~~~~l~~ 85 (121)
T cd09013 65 HIAWRASSPEALERRVAALEA 85 (121)
T ss_pred EEEEEcCCHHHHHHHHHHHHH
Confidence 599999999999999999988
No 29
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=25.92 E-value=75 Score=20.76 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred ceeecccCChHHHHHHHHHHHH
Q psy10473 40 IAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~ 61 (124)
-.++|.|.+.++++.+.+++++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~l~~ 81 (120)
T cd08362 60 DVVSFSVASRADVDALARQVAA 81 (120)
T ss_pred ceEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999999999999997
No 30
>PRK06724 hypothetical protein; Provisional
Probab=25.07 E-value=73 Score=22.49 Aligned_cols=21 Identities=5% Similarity=0.289 Sum_probs=19.5
Q ss_pred eeecccCChHHHHHHHHHHHH
Q psy10473 41 AVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 41 alGFyC~te~DFedl~~~i~~ 61 (124)
-+||-+.++++++.+++++++
T Consensus 66 h~af~v~~~~dvd~~~~~l~~ 86 (128)
T PRK06724 66 HICYQAINRKVVDEVAEFLSS 86 (128)
T ss_pred eEEEecCChHHHHHHHHHHHH
Confidence 588999999999999999988
No 31
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=24.54 E-value=83 Score=20.30 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred eeecccCChHHHHHHHHHHHH
Q psy10473 41 AVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 41 alGFyC~te~DFedl~~~i~~ 61 (124)
-++|.+.+.++++.+.+++++
T Consensus 60 h~~~~v~~~~~v~~~~~~l~~ 80 (117)
T cd07240 60 ALGFEVASEEDLEALAAHLEA 80 (117)
T ss_pred eEEEEcCCHHHHHHHHHHHHH
Confidence 479999999999999999988
No 32
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.44 E-value=69 Score=21.97 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=18.1
Q ss_pred ecccCChHHHHHHHHHHHHh
Q psy10473 43 CFLCKTENDFASLCSQIRAE 62 (124)
Q Consensus 43 GFyC~te~DFedl~~~i~~~ 62 (124)
=|+|.|+++-+.|.+.|+.+
T Consensus 82 ~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 82 TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EEEeCCHHHHHHHHHHHHhh
Confidence 68899999999999999874
No 33
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.11 E-value=84 Score=20.86 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=20.1
Q ss_pred ceeecccCChHHHHHHHHHHHH
Q psy10473 40 IAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~ 61 (124)
-.++|-+.+.++++.+.+++++
T Consensus 70 ~hia~~v~~~~d~~~~~~~l~~ 91 (128)
T cd07242 70 HHLAFRAPSREAVDELYARLAK 91 (128)
T ss_pred eEEEEEcCCHHHHHHHHHHHHH
Confidence 4699999999999999999988
No 34
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.20 E-value=85 Score=22.00 Aligned_cols=32 Identities=41% Similarity=0.802 Sum_probs=22.1
Q ss_pred cccccCCccceeecccCChHHHHHHHHHHHHhhc-CCCCCcEEE
Q psy10473 31 LHILHMDPSIAVCFLCKTENDFASLCSQIRAELR-PEQQPLFEL 73 (124)
Q Consensus 31 m~i~~mDPS~alGFyC~te~DFedl~~~i~~~l~-~~~~PLF~v 73 (124)
+-+..+|||+. |+.||+.++.+.. ...+| |++
T Consensus 11 i~it~~d~~~s----------~e~L~~~v~~~c~~~~~q~-ft~ 43 (83)
T cd06404 11 IMITSIDPSIS----------LEELCNEVRDMCRFHNDQP-FTL 43 (83)
T ss_pred EEEEEcCCCcC----------HHHHHHHHHHHhCCCCCCc-EEE
Confidence 44566777654 8999999999776 44445 555
No 35
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.94 E-value=96 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.347 Sum_probs=24.2
Q ss_pred ccccCCccc-eeecccCChHHHHHHHHHHHH
Q psy10473 32 HILHMDPSI-AVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 32 ~i~~mDPS~-alGFyC~te~DFedl~~~i~~ 61 (124)
-|.-..||- .+-|+|.+.++-+.|++.|++
T Consensus 67 cFel~~~~~~~~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 67 CFQIVERALPTVYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred EEEEecCCCCeEEEEeCCHHHHHHHHHHHhc
Confidence 344456666 778999999999999999975
No 36
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.72 E-value=90 Score=19.58 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.0
Q ss_pred CccceeecccCChHHHHHHHHHHHH
Q psy10473 37 DPSIAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 37 DPS~alGFyC~te~DFedl~~~i~~ 61 (124)
||.+.+|-...|.++|........-
T Consensus 1 n~~l~~G~~F~~~~e~k~av~~yai 25 (67)
T PF03108_consen 1 NPELEVGQTFPSKEEFKEAVREYAI 25 (67)
T ss_pred CCccccCCEECCHHHHHHHHHHHHH
Confidence 7999999999999999988877754
No 37
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=21.72 E-value=1e+02 Score=20.29 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.6
Q ss_pred cceeecccCChHHHHHHHHHHHH
Q psy10473 39 SIAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 39 S~alGFyC~te~DFedl~~~i~~ 61 (124)
-..++|-+.+.++++.+.+++++
T Consensus 61 ~~hi~~~v~~~~dv~~~~~~l~~ 83 (121)
T cd07266 61 LGHIAFRVRSEEDLDKAEAFFQE 83 (121)
T ss_pred eeEEEEECCCHHHHHHHHHHHHH
Confidence 45689999999999999999988
No 38
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.42 E-value=49 Score=28.09 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.5
Q ss_pred cCCCcc-ccccccCCcccee
Q psy10473 24 HCPQAS-RLHILHMDPSIAV 42 (124)
Q Consensus 24 HC~~pr-rm~i~~mDPS~al 42 (124)
|-..-| ||++..|+|||++
T Consensus 123 hpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred CcccCceecChhhcCCceEE
Confidence 445556 9999999999986
No 39
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=21.17 E-value=1e+02 Score=20.95 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=20.2
Q ss_pred ceeecccCChHHHHHHHHHHHH
Q psy10473 40 IAVCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 40 ~alGFyC~te~DFedl~~~i~~ 61 (124)
..+||-+.+++|++.+.+++++
T Consensus 61 ~~iaf~v~~~~dv~~~~~~l~~ 82 (124)
T cd08361 61 QASGFELRDDDALESAATELEQ 82 (124)
T ss_pred EEEEEEECCHHHHHHHHHHHHH
Confidence 4689999999999999999988
No 40
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.02 E-value=77 Score=21.85 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=17.4
Q ss_pred eecccCChHHHHHHHHHHHH
Q psy10473 42 VCFLCKTENDFASLCSQIRA 61 (124)
Q Consensus 42 lGFyC~te~DFedl~~~i~~ 61 (124)
|||.+.+ ++++.|++++++
T Consensus 70 iaf~v~~-~~ld~~~~~l~~ 88 (131)
T cd08364 70 IAFKISD-SDVDEYTERIKA 88 (131)
T ss_pred EEEEcCH-HHHHHHHHHHHH
Confidence 8999976 899999999988
No 41
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.91 E-value=1.3e+02 Score=21.14 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=24.4
Q ss_pred CccceeecccCChHHHHHHHHHHHHhh
Q psy10473 37 DPSIAVCFLCKTENDFASLCSQIRAEL 63 (124)
Q Consensus 37 DPS~alGFyC~te~DFedl~~~i~~~l 63 (124)
.|...+=|.++|.++=..|+++|+..+
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 577889999999999999999999865
Done!