RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10473
         (124 letters)



>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 334

 Score = 75.4 bits (185), Expect = 5e-18
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 20  DSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D T+HC Q   R++IL++DPS+A+ F CK E DF + CS ++ E+  E   +FEL++   
Sbjct: 272 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 331

Query: 79  EDW 81
             W
Sbjct: 332 SHW 334


>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 350

 Score = 69.3 bits (169), Expect = 9e-16
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 14  DSEKKLDSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLF 71
           D     D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++   L     P+F
Sbjct: 286 DGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMF 345

Query: 72  ELIE 75
           EL+E
Sbjct: 346 ELVE 349


>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 135

 Score = 27.7 bits (61), Expect = 0.29
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 34  LHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPRPSNLGG 93
              +P   +CF    +    S+      E+  +++   EL +D   +  P  P       
Sbjct: 59  FLSNPKAGLCF----QEKGDSVALMGEVEVVTDEKLKQELWQDWFIEHFPGGPTDPGYVL 114


>d1dhna_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 121

 Score = 27.2 bits (60), Expect = 0.38
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 4  GHIGVYDKEQDSEKKLDSTYHCPQASRLHI-LHMDPSIAVCFLCKTEN-DFASLCSQIRA 61
          G+ G    E +            Q  ++ + L +D S A       +   +  +  ++++
Sbjct: 14 GYHGALSAENEI----------GQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKS 63

Query: 62 ELRPEQQPLFELIEDPIED 80
           +   +     L+E   E 
Sbjct: 64 IM---EGKAVNLLEHLAER 79


>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc
           punctiforme pcc 73102 [TaxId: 63737]}
          Length = 143

 Score = 25.5 bits (55), Expect = 1.7
 Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 32  HILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPRPSNL 91
             +     + V F    +  + S+     ++L  ++  + EL +  ++ W P      ++
Sbjct: 60  TEIEHHEQVNVSFSSPEQQRYVSISG--TSQLVKDRNKMRELWKPELQTWFPKGLDEPDI 117

Query: 92  GG 93
             
Sbjct: 118 AL 119


>d1sqla_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 120

 Score = 23.4 bits (50), Expect = 8.2
 Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 19/81 (23%)

Query: 4  GHIGVYDKEQDSEKK----LDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQI 59
          G  G   +E+   +     +D+     +A     L                 +  + S  
Sbjct: 13 GFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDT------------ISYVDIFSLA 60

Query: 60 RAELRPEQQPLFELIEDPIED 80
          +  +         L+E   E 
Sbjct: 61 KEIVEGSP---RNLLETVAEL 78


>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium
           acetobutylicum [TaxId: 1488]}
          Length = 141

 Score = 23.2 bits (49), Expect = 8.5
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 23  YHCPQASRL-HILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDW 81
                ++R+   L  +  I + F+   +     L      E+  ++     L  D  E +
Sbjct: 48  LSTNTSTRMVERLKKNNKICLYFVDDNKFAGLML--VGTIEILHDRASKEMLWTDGCEIY 105

Query: 82  TPTQPRPSNLGG 93
            P      +   
Sbjct: 106 YPLGIDDPDYTA 117


>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
          N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 102

 Score = 23.1 bits (48), Expect = 9.0
 Identities = 3/35 (8%), Positives = 9/35 (25%)

Query: 29 SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL 63
          S +    +       + C    +      ++   L
Sbjct: 65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,542
Number of extensions: 19644
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 10
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)