BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10474
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 59/71 (83%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Query: 67 KGHYWTLMNQQ 77
KG Y+++++ Q
Sbjct: 1260 KGIYFSMVSVQ 1270
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 52/72 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE +VQAAL+ A +GRT ++IAHRLSTV+NAD+I G IVE GNH L+ +
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 67 KGHYWTLMNQQN 78
KG Y+ L+ Q
Sbjct: 615 KGIYFKLVMTQT 626
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 59/71 (83%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Query: 67 KGHYWTLMNQQ 77
KG Y+++++ Q
Sbjct: 1260 KGIYFSMVSVQ 1270
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 52/72 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE +VQAAL+ A +GRT ++IAHRLSTV+NAD+I G IVE GNH L+ +
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 67 KGHYWTLMNQQN 78
KG Y+ L+ Q
Sbjct: 615 KGIYFKLVMTQT 626
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 58/72 (80%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE +VQ AL+ A KGRT ++IAHRLST++NADLI+ + GQ+VE+G+H++L+A+
Sbjct: 583 SALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ 642
Query: 67 KGHYWTLMNQQN 78
+G Y+ L+ Q
Sbjct: 643 QGLYYDLVTAQT 654
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESEK+VQ AL+ A +GRT ++IAHRL+TV NAD I V+ G I+E G H L+++
Sbjct: 1246 SALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305
Query: 67 KGHYWTLMNQQ 77
KG Y+ L +Q
Sbjct: 1306 KGAYYKLTQKQ 1316
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 53/71 (74%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
S +D ++EK +QAA+ +G+T ++IAHRL+T++NADLI+VL+ G+IVEMG H L+ K
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579
Query: 67 KGHYWTLMNQQ 77
+G Y+ L Q
Sbjct: 580 RGFYYELFTSQ 590
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 52/72 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++Q AL+ K RT L++AHRLST+ +AD IVV++ G IVE G H+ L+AK
Sbjct: 506 SALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
Query: 67 KGHYWTLMNQQN 78
+G Y L + QN
Sbjct: 566 QGAYEHLYSIQN 577
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 78.6 bits (192), Expect = 8e-16, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+E LVQ AL+ GRTVL+IAHRLST++NA+++ VL G+I E G H+ LL+K
Sbjct: 512 SALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK 571
Query: 67 -KGHYWTLMNQQN 78
G Y LMN+Q+
Sbjct: 572 PNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+E LVQ AL+ GRTVL+IAH LST++NA+++ VL G+I E G H+ LL+K
Sbjct: 543 SALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSK 602
Query: 67 -KGHYWTLMNQQN 78
G Y LMN+Q+
Sbjct: 603 PNGIYRKLMNKQS 615
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
Query: 67 KGHYWTLMNQ 76
++ + Q
Sbjct: 228 PESLYSYLYQ 237
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
Query: 67 KGHYWTLMNQ 76
++ + Q
Sbjct: 234 PESLYSYLYQ 243
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 170 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
Query: 67 KGHYWTLMNQ 76
++ + Q
Sbjct: 230 PESLYSYLYQ 239
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
Query: 67 KGHYWTLMNQ 76
++ + Q
Sbjct: 234 PESLYSYLYQ 243
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 170 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
Query: 67 KGHYWTLMNQ 76
++ + Q
Sbjct: 230 PESLYSYLYQ 239
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+ +QAAL+ K +TVL+IAHRLST++ AD I+V+ G+I+E G H LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568
Query: 67 KGHYWTL 73
G Y L
Sbjct: 569 DGAYAQL 575
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+ +QAAL+ K RT L+IAHRLST++ AD IVV++ G IVE G H LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 569 HGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+ +QAAL+ K RT L+IAHRLST++ AD IVV++ G IVE G H LL
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEH 568
Query: 67 KGHYWTLMNQQ 77
+G Y L Q
Sbjct: 569 RGVYAQLHKMQ 579
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IA RLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
Query: 67 KGHYWTLMNQ 76
++ + Q
Sbjct: 228 PESLYSYLYQ 237
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IA RLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
Query: 67 KGHYWTLMNQ 76
++ + Q
Sbjct: 234 PESLYSYLYQ 243
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD +E+ +QA+L C RT +++AHRLSTV NAD I+V++ G IVE G H++LL++
Sbjct: 219 SALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278
Query: 67 KGHY---WTLMNQQ 77
G Y W L Q
Sbjct: 279 GGVYADMWQLQQGQ 292
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
S+LD+++E L Q A+E K RT+++IAHRLST+ +A+ I++L G+IVE G HK LL
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
Query: 67 KGHYWTLMNQQN 78
G Y + N Q+
Sbjct: 244 NGEYAEMWNMQS 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
++LD+ESE +VQ AL+S KGRT L+IAHRLST+ +AD I ++ GQI G H L+A
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
Query: 67 KGHYWTLMNQQ 77
Y +++Q
Sbjct: 228 HPLYAKYVSEQ 238
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
SALD S+ V+ L + + R+VL+I LS V+ AD I+ L+ G I E G H+ L+
Sbjct: 183 SALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM 242
Query: 65 AKKGHYWTLMN 75
KKG YW ++
Sbjct: 243 EKKGCYWAMVQ 253
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
K +T +++ H +S + D+I+V+ G+I EMG+++ LLA+ G +
Sbjct: 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAF 222
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
SALD ++ VQ L + + RTVL+I H+LS + A I+ L+ G + E G H L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 65 AKKGHYWTLM 74
+ G Y +++
Sbjct: 245 ERGGCYRSMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
SALD ++ VQ L + + RTVL+I +LS + A I+ L+ G + E G H L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 65 AKKGHYWTLM 74
+ G Y +++
Sbjct: 245 ERGGCYRSMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
SALD ++ VQ L + + RTVL+I +LS + A I+ L+ G + E G H L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 65 AKKGHYWTLM 74
+ G Y +++
Sbjct: 245 ERGGCYRSMV 254
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 15 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKG 68
KLV+ +G TV++I H L ++NAD I+ L + G IV G + +AK
Sbjct: 846 KLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEE-IAKNP 904
Query: 69 HYWT 72
H +T
Sbjct: 905 HSYT 908
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66
G+TV++I+H + TV N D +VVL+ G+ V G L K
Sbjct: 190 GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66
G+TV++I+H + TV N D +VVL+ G+ V G L K
Sbjct: 188 GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 27 GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
G TVL+I H L ++ AD I+ L + GQIV +G
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 27 GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
G TVL+I H L ++ AD I+ L + GQIV +G
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 27 GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
G TVL+I H L ++ AD I+ L + GQIV +G
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 21 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
LE KG T L+I HRL V N D + V+ GQI+ G
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 21 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
LE KG T L+I HRL V N D + V+ GQI+ G
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 21 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
LE KG T L+I HRL V N D + V+ GQI+ G
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 27 GRTVLMIAH-RLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
GRT++ + H ++ + AD IVVL AG++ ++G L HY
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY----HY 224
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 27 GRTVLMIAH-RLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
GRT++ + H ++ + AD IVVL AG++ ++G L HY
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY----HY 224
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 27 GRTVLMIAH-RLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
GRT++ + H ++ + AD IVVL AG++ ++G L HY
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY----HY 224
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 27 GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK 67
G T++++ H T+++AD IV + G+IV G + LL K
Sbjct: 573 GNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNK 619
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL 49
KG TV++I H L ++ +D I+ L
Sbjct: 915 KGNTVIVIEHNLDVIKTSDWIIDL 938
>pdb|4DB5|A Chain A, Crystal Structure Of Rabbit Gitrl
Length = 125
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG-N 59
++ ++G + + K CK + + S +QN I AG I+E+ N
Sbjct: 42 LYIIYGQVAPDPTYKGFAPFEVQLCKNKEAIQTLTNNSKIQNLGGIYEFDAGDIIELRFN 101
Query: 60 HKSLLAKKGHYWTLM 74
+ K YW ++
Sbjct: 102 SDDQVLKNNTYWGIV 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,792,630
Number of Sequences: 62578
Number of extensions: 44413
Number of successful extensions: 203
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 44
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)